BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] (526 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|90420533|ref|ZP_01228440.1| transcription termination/elongation factor nusA [Aurantimonas manganoxydans SI85-9A1] gi|90335261|gb|EAS49014.1| transcription termination/elongation factor nusA [Aurantimonas manganoxydans SI85-9A1] Length = 537 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 337/517 (65%), Positives = 420/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++V+ MAD+IQKAARS YG ++IRV+IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVIGAMADAIQKAARSRYGQETNIRVDINQKTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV+EVE+ QI L +ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDEVEDPNTQIYLDLARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE R GDR Sbjct: 123 VRDAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEQIPRELFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +KAV+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 TSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFLVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERSET 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGFA VEE+A V E+A+IEGFD+ETA EIQ RARE+LE + Sbjct: 363 FMNALNVDEMVGQVLASEGFATVEEIAYVDQDEVAAIEGFDDETASEIQERAREFLERRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K ELGVS++L I G+ + + VALGE+G+KTMED AGC+ DDL+GW+E K G Sbjct: 423 AEFDAKRVELGVSDDLRQINGVTTPMLVALGEDGVKTMEDFAGCAADDLIGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +F G LS+ + + M++ AR GWI + +A Sbjct: 483 TRFPGALSAFDVSRADADQMVLQARLIAGWITEADLA 519 >gi|182678035|ref|YP_001832181.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633918|gb|ACB94692.1| NusA antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 538 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 334/524 (63%), Positives = 412/524 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +VL+ M D+IQKAARS YG +++R EINP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLASMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+E++N QI+L AR ++P+ ++G +++ LPP DFGR+A QSAKQVI+QK Sbjct: 63 FSRLLHVVDEIDNDAVQITLAEARKKNPAAELGDWIAETLPPFDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREVFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VKAV+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDGVIEVKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL Sbjct: 243 ISRDTSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESARRQKEFTERTAM 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ LL +EGF VEELA V+ SE+A IEGFDEETA EIQ RA YL I+ Sbjct: 363 FMGALDVDEVVGQLLASEGFRSVEELAFVEPSELAVIEGFDEETAAEIQARANAYLARIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + RELGVS++L I G+ + + V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 423 AEHETRRRELGVSDDLLEIDGLTNAMLVKFGENDIKTVEDLAGCATDDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G L +++ E +I+ AR K GWI+ A E Q+ Sbjct: 483 TRHPGILDGFEVSREEAEGLIMKARVKAGWIDALPEASEPEQET 526 >gi|294851387|ref|ZP_06792060.1| N utilization substance protein A [Brucella sp. NVSL 07-0026] gi|294819976|gb|EFG36975.1| N utilization substance protein A [Brucella sp. NVSL 07-0026] Length = 591 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 339/522 (64%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 57 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 116 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 117 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 176 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 177 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 236 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 237 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 296 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+ ++NAL+PA V KVVL Sbjct: 297 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASVIVNALQPAEVAKVVL 356 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 357 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 416 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFD++TA EIQ RAREYLE I+ Sbjct: 417 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDKDTAGEIQDRAREYLERIE 476 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 477 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 536 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 537 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 578 >gi|225626528|ref|ZP_03784567.1| transcription termination factor NusA [Brucella ceti str. Cudo] gi|225618185|gb|EEH15228.1| transcription termination factor NusA [Brucella ceti str. Cudo] Length = 575 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 562 >gi|237816502|ref|ZP_04595495.1| transcription termination factor NusA [Brucella abortus str. 2308 A] gi|237788569|gb|EEP62784.1| transcription termination factor NusA [Brucella abortus str. 2308 A] Length = 575 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 41 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 100 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 101 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 160 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 161 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 220 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 221 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 280 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 281 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 340 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 341 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 400 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 401 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 460 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 461 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 520 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 521 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 562 >gi|319898339|ref|YP_004158432.1| transcription elongation protein [Bartonella clarridgeiae 73] gi|319402303|emb|CBI75842.1| transcription elongation protein [Bartonella clarridgeiae 73] Length = 536 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 328/524 (62%), Positives = 423/524 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKKDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDVGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA+EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVDLEEITSIDGFDHDTALEIQNRAREYLECKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL ++PG+ + + VALGE+GIKTMED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKKLGVSDELQTLPGMTNAMLVALGEDGIKTMEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + F G L++ + E+M++ AR + GWI + + V+DA Sbjct: 483 QTFPGILTAFDITRADAETMVLAARVQAGWINQTDLPQHPVEDA 526 >gi|86355778|ref|YP_467670.1| transcription elongation factor NusA [Rhizobium etli CFN 42] gi|86279880|gb|ABC88943.1| N-utilization substance protein A [Rhizobium etli CFN 42] Length = 533 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 354/519 (68%), Positives = 431/519 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDE+TA EIQ RAREYLE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDEKRKALGVKDELRQIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDLSRVEAEQMIVQARLAAGWITEEDLAKG 521 >gi|190889787|ref|YP_001976329.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CIAT 652] gi|190695066|gb|ACE89151.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CIAT 652] gi|327192408|gb|EGE59368.1| N-utilization substance protein (transcription elongation factor) [Rhizobium etli CNPAF512] Length = 533 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 352/519 (67%), Positives = 431/519 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDEKRKALGVEDELRGIDGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWTERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLAKG 521 >gi|114705359|ref|ZP_01438267.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506] gi|114540144|gb|EAU43264.1| transcription elongation factor NusA [Fulvimarina pelagi HTCC2506] Length = 533 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 338/517 (65%), Positives = 422/517 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR++V+ MAD+IQKAARS YG ++IR +IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKTIDREIVIEAMADAIQKAARSRYGQETNIRCDINTKTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+VE+ QI L++ARD++P + G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEDVEDPATQIYLELARDKNPDAEPGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERD QY E+KD+VGEII+G VKRVEYGNVIVDLG + +IRRDE I RE RPGDR Sbjct: 123 VREAERDMQYDEYKDRVGEIINGQVKRVEYGNVIVDLGKGEAIIRRDEQIPRELYRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRRE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+ +K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIITLKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SSDSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSSDSSVDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESERRQKEFNERSEI 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGFA VEE+A V E++SIEGFDE+TA E+Q RARE+LE + Sbjct: 363 FMEALNVDEMVGQLLASEGFATVEEVAYVDAEEVSSIEGFDEDTAEELQSRAREFLERRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K ELGV++EL IPG+ +++ VALGE+G KT+ED AG +VDDL GW+E G Sbjct: 423 AEFDAKRVELGVADELKQIPGLTTEMLVALGEDGTKTIEDFAGYAVDDLCGWTERSKGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++F+G LS + E M+++AR K GWI +E +A Sbjct: 483 KRFEGTLSKFDVSRADAEQMVLNARLKAGWITEEDLA 519 >gi|116249893|ref|YP_765731.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. viciae 3841] gi|115254541|emb|CAK05615.1| putative transcription elongation protein (N utilization substance protein A) (L factor) [Rhizobium leguminosarum bv. viciae 3841] Length = 533 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 354/519 (68%), Positives = 431/519 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDLAKG 521 >gi|209551640|ref|YP_002283557.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537396|gb|ACI57331.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 535 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 355/519 (68%), Positives = 431/519 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I GI +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGITAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +KF+G S + + E MI+ AR GWI +E +A Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITEEDLAKG 521 >gi|217978443|ref|YP_002362590.1| NusA antitermination factor [Methylocella silvestris BL2] gi|217503819|gb|ACK51228.1| NusA antitermination factor [Methylocella silvestris BL2] Length = 532 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 331/530 (62%), Positives = 416/530 (78%), Gaps = 7/530 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +VLS M D+IQKAARS YG +++R EINP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDRQIVLSSMEDAIQKAARSRYGQETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+++EN I+L+ AR ++P+ +G +++ LPP DFGR+A QSAKQVI+QK Sbjct: 63 FSRLLLVVDQIENDAIHITLEDARKKNPAAQVGDWIAETLPPFDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G+I++G VKRVEYGNVI+DLG + IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYQEYKDRIGDIVNGVVKRVEYGNVIIDLGRGEATIRRDEMIPREMFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ I+QVKAV+RDPGSRAK+AV Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFQQEVPEIYDNIIQVKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V KVVL Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNA 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ LL +EGF VEELA V+ +E+A+IEGFDE+TAVEIQ RA++YL I+ Sbjct: 363 FMNALDVDEVVGQLLASEGFRSVEELAFVEPAELAAIEGFDEDTAVEIQARAQDYLARIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++ ELGV++EL + G+ + + V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 AEQDQRRIELGVADELREVAGVTTAMLVKFGENDVKTVEDLAGCATDDLIGWTERKEGES 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE-------KEKVADEEVQD 524 K G+L +++ E+MI+ AR GWI+ +E + EV+D Sbjct: 483 VKHAGYLDGFELTREEAETMIMTARVHAGWIDAIPQPAVEEPQLEGEVRD 532 >gi|241207071|ref|YP_002978167.1| transcription elongation factor NusA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860961|gb|ACS58628.1| NusA antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 533 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 353/519 (68%), Positives = 430/519 (82%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM +++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RARE+LE ++ Sbjct: 363 FMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEETAQEIQQRAREFLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVQDELREINGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +KF+G S + + E MI+ AR GWI +E + Sbjct: 483 KKFEGLFSKFDVSRVEAEQMIVQARLSAGWITQEDLDKG 521 >gi|225853588|ref|YP_002733821.1| transcription elongation factor NusA [Brucella melitensis ATCC 23457] gi|256262928|ref|ZP_05465460.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|225641953|gb|ACO01867.1| transcription termination factor NusA [Brucella melitensis ATCC 23457] gi|263092802|gb|EEZ16977.1| ribosomal protein S1 [Brucella melitensis bv. 2 str. 63/9] gi|326410161|gb|ADZ67226.1| transcription elongation factor NusA [Brucella melitensis M28] gi|326539879|gb|ADZ88094.1| transcription termination factor NusA [Brucella melitensis M5-90] Length = 537 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 339/522 (64%), Positives = 421/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLA QLTGW IDI+TE+E+S R K+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLALQLTGWDIDILTEDEESERRHKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. 16M] gi|23503011|ref|NP_699138.1| transcription elongation factor NusA [Brucella suis 1330] gi|62291000|ref|YP_222793.1| transcription elongation factor NusA [Brucella abortus bv. 1 str. 9-941] gi|82700909|ref|YP_415483.1| transcription elongation factor NusA [Brucella melitensis biovar Abortus 2308] gi|148559551|ref|YP_001259957.1| transcription elongation factor NusA [Brucella ovis ATCC 25840] gi|161620071|ref|YP_001593958.1| transcription elongation factor NusA [Brucella canis ATCC 23365] gi|189025212|ref|YP_001935980.1| transcription elongation factor NusA [Brucella abortus S19] gi|254690294|ref|ZP_05153548.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|254694782|ref|ZP_05156610.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|254696410|ref|ZP_05158238.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|254705161|ref|ZP_05166989.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|254707321|ref|ZP_05169149.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|254709137|ref|ZP_05170948.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|254731323|ref|ZP_05189901.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|256030662|ref|ZP_05444276.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|256045766|ref|ZP_05448644.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|256060123|ref|ZP_05450305.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|256112485|ref|ZP_05453406.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|256158664|ref|ZP_05456547.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|256254068|ref|ZP_05459604.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|256258547|ref|ZP_05464083.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|256370558|ref|YP_003108069.1| transcription elongation factor NusA [Brucella microti CCM 4915] gi|260169566|ref|ZP_05756377.1| transcription elongation factor NusA [Brucella sp. F5/99] gi|260546263|ref|ZP_05822003.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260563062|ref|ZP_05833548.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260755834|ref|ZP_05868182.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|260759057|ref|ZP_05871405.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|260760782|ref|ZP_05873125.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|260884859|ref|ZP_05896473.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|261215109|ref|ZP_05929390.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|261221209|ref|ZP_05935490.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|261314803|ref|ZP_05954000.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|261316637|ref|ZP_05955834.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|261324100|ref|ZP_05963297.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|261755866|ref|ZP_05999575.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|261759094|ref|ZP_06002803.1| ribosomal protein S1 [Brucella sp. F5/99] gi|265987709|ref|ZP_06100266.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|265992183|ref|ZP_06104740.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|265993921|ref|ZP_06106478.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|265997170|ref|ZP_06109727.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|297247386|ref|ZP_06931104.1| transcription termination protein NusA [Brucella abortus bv. 5 str. B3196] gi|17984018|gb|AAL53148.1| n utilization substance protein a [Brucella melitensis bv. 1 str. 16M] gi|23349051|gb|AAN31053.1| N utilization substance protein A [Brucella suis 1330] gi|62197132|gb|AAX75432.1| MusA, N utilization substance protein A [Brucella abortus bv. 1 str. 9-941] gi|82617010|emb|CAJ12119.1| Ribosomal protein S1:RNA binding S1:KH domain:KH domain, type 1 [Brucella melitensis biovar Abortus 2308] gi|148370808|gb|ABQ60787.1| N utilization substance protein A [Brucella ovis ATCC 25840] gi|161336882|gb|ABX63187.1| transcription termination factor NusA [Brucella canis ATCC 23365] gi|189020784|gb|ACD73506.1| Ribosomal protein S1 [Brucella abortus S19] gi|256000721|gb|ACU49120.1| transcription elongation factor NusA [Brucella microti CCM 4915] gi|260096370|gb|EEW80246.1| ribosomal protein S1 [Brucella abortus NCTC 8038] gi|260153078|gb|EEW88170.1| ribosomal protein S1 [Brucella melitensis bv. 1 str. 16M] gi|260669375|gb|EEX56315.1| transcription elongation factor NusA [Brucella abortus bv. 4 str. 292] gi|260671214|gb|EEX58035.1| transcription elongation factor NusA [Brucella abortus bv. 2 str. 86/8/59] gi|260675942|gb|EEX62763.1| transcription elongation factor NusA [Brucella abortus bv. 6 str. 870] gi|260874387|gb|EEX81456.1| transcription elongation factor NusA [Brucella abortus bv. 9 str. C68] gi|260916716|gb|EEX83577.1| transcription elongation factor NusA [Brucella abortus bv. 3 str. Tulya] gi|260919793|gb|EEX86446.1| transcription elongation factor NusA [Brucella ceti B1/94] gi|261295860|gb|EEX99356.1| transcription elongation factor NusA [Brucella pinnipedialis B2/94] gi|261300080|gb|EEY03577.1| transcription elongation factor NusA [Brucella neotomae 5K33] gi|261303829|gb|EEY07326.1| transcription elongation factor NusA [Brucella pinnipedialis M163/99/10] gi|261739078|gb|EEY27074.1| ribosomal protein S1 [Brucella sp. F5/99] gi|261745619|gb|EEY33545.1| transcription elongation factor NusA [Brucella suis bv. 3 str. 686] gi|262551638|gb|EEZ07628.1| transcription elongation factor NusA [Brucella ceti M490/95/1] gi|262764902|gb|EEZ10823.1| transcription elongation factor NusA [Brucella melitensis bv. 3 str. Ether] gi|263003249|gb|EEZ15542.1| transcription elongation factor NusA [Brucella melitensis bv. 1 str. Rev.1] gi|264659906|gb|EEZ30167.1| transcription elongation factor NusA [Brucella pinnipedialis M292/94/1] gi|297174555|gb|EFH33902.1| transcription termination protein NusA [Brucella abortus bv. 5 str. B3196] Length = 537 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|15963990|ref|NP_384343.1| transcription elongation factor NusA [Sinorhizobium meliloti 1021] gi|307306402|ref|ZP_07586146.1| NusA antitermination factor [Sinorhizobium meliloti BL225C] gi|307319289|ref|ZP_07598718.1| NusA antitermination factor [Sinorhizobium meliloti AK83] gi|15073166|emb|CAC41674.1| Probable N utilization substance protein A [Sinorhizobium meliloti 1021] gi|306895125|gb|EFN25882.1| NusA antitermination factor [Sinorhizobium meliloti AK83] gi|306902244|gb|EFN32841.1| NusA antitermination factor [Sinorhizobium meliloti BL225C] Length = 542 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 354/516 (68%), Positives = 437/516 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V++ EI+SIEGFDE+TA E+Q RAREYLE I+ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVELDEISSIEGFDEDTANELQTRAREYLEKIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGVS+EL +I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDAKRKELGVSDELRTIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++F+G S +++ E+MI+ AR GWI +E + Sbjct: 483 KRFEGIFSKFEVTREEAETMIVQARLAAGWITEEDL 518 >gi|254713438|ref|ZP_05175249.1| transcription elongation factor NusA [Brucella ceti M644/93/1] gi|254716206|ref|ZP_05178017.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261217980|ref|ZP_05932261.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261321170|ref|ZP_05960367.1| transcription elongation factor NusA [Brucella ceti M644/93/1] gi|260923069|gb|EEX89637.1| transcription elongation factor NusA [Brucella ceti M13/05/1] gi|261293860|gb|EEX97356.1| transcription elongation factor NusA [Brucella ceti M644/93/1] Length = 537 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 340/522 (65%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KT ED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTKEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|328545919|ref|YP_004306028.1| transcription elongation protein (N utilization substance protein A) (L factor) [polymorphum gilvum SL003B-26A1] gi|326415659|gb|ADZ72722.1| Putative transcription elongation protein (N utilization substance protein A) (L factor) [Polymorphum gilvum SL003B-26A1] Length = 544 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 337/522 (64%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRGIVIAAMEDAIQKAARSRYGTETEVRAEINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +ISL A+ R+P +G +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVETVENVSTEISLADAKARNPEATLGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YIYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV Sbjct: 183 IRAYIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD+ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNPDAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRQKEFQERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL EGF VEE+A V + EIA IEGFDE+TA EIQ RAR+YL ++ Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVDLEEIAMIEGFDEDTAEEIQARARDYLAELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV +EL SI G+ + + VALG++G+KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDDERRELGVQDELRSIDGLTTAMLVALGKDGVKTIEDLAGCATDDLVGWTERKEGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 + DG LS + E+MI+ AR GWI +E++A++ + Sbjct: 483 IRHDGALSGFDVSRADAEAMILAARLAAGWITEEELANQNDE 524 >gi|227824069|ref|YP_002828042.1| transcription elongation factor NusA [Sinorhizobium fredii NGR234] gi|227343071|gb|ACP27289.1| transcription termination factor, NusA [Sinorhizobium fredii NGR234] Length = 536 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 355/522 (68%), Positives = 440/522 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ ++Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKADDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYEEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA VTKVVL Sbjct: 243 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVTKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFDEETA EIQ RAREYL+ ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLDEISSIDGFDEETATEIQTRAREYLDKVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGVS+EL I G+ S++ VALGE GIKT+ED AGC+ DDL+GW+E K G Sbjct: 423 AEMDAKRKELGVSDELRQIDGLTSQMLVALGEEGIKTIEDFAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 ++F+G S L +++ E+MI+ AR GWI +E +A ++ + Sbjct: 483 KRFEGTFSKLEVSREEAEAMIVQARLAAGWITEEDLAADQDE 524 >gi|163844176|ref|YP_001628581.1| transcription elongation factor NusA [Brucella suis ATCC 23445] gi|163674899|gb|ABY39010.1| transcription termination factor NusA [Brucella suis ATCC 23445] Length = 537 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA VTKVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPVAASFIVNALQPAEVTKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|260567370|ref|ZP_05837840.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] gi|260156888|gb|EEW91968.1| ribosomal protein S1 [Brucella suis bv. 4 str. 40] Length = 537 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 340/522 (65%), Positives = 422/522 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRG RVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGFRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|163757748|ref|ZP_02164837.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43] gi|162285250|gb|EDQ35532.1| transcription elongation factor NusA [Hoeflea phototrophica DFL-43] Length = 550 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 344/516 (66%), Positives = 431/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++V++ MAD+IQKAARS YG+ S+IR +IN +TG+I Sbjct: 7 VSANRLELLQIADAVAREKSIDREIVIAAMADAIQKAARSRYGSESNIRADINAKTGEIK 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L +ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 67 LQRLLEVVEHAEDYSTQIPLMLARDRNPDAQLGDFIADPLPPMDFGRIAAQSAKQVIVQK 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD++GE+++GTVKRVEYGNVIVDLG +G++RRDETI RE R GDR Sbjct: 127 VREAERDRQFDEFKDRIGEVVNGTVKRVEYGNVIVDLGRGEGIVRRDETIPREAFRYGDR 186 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++++V+RDPGSRAK+AV Sbjct: 187 IRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIRSVARDPGSRAKIAV 246 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP ATF++NAL+PA V KVVL Sbjct: 247 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSPATFIVNALQPAEVAKVVL 306 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+FNERTQ Sbjct: 307 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFNERTQL 366 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGF+ VEE+A V + EI +IEGFD+ETA E+Q RAREYL+ ++ Sbjct: 367 FMEALDVDEMVGQVLASEGFSQVEEVAYVDLGEITAIEGFDDETAEELQTRAREYLDKVE 426 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K +ELGV +EL SI G+ + + VALG + IKT+ED AGC+VDDL GWSE K G Sbjct: 427 AELDAKRKELGVEDELRSIAGMTTAMMVALGGDEIKTVEDFAGCAVDDLTGWSERKDGET 486 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++FDG + + + + ESMI+ AR +GWI ++++ Sbjct: 487 KRFDGLFTGMDITRAEAESMILSARLAVGWITEDEL 522 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] gi|254040465|gb|ACT57261.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 526/526 (100%), Positives = 526/526 (100%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI Sbjct: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ Sbjct: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD Sbjct: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA Sbjct: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV Sbjct: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ Sbjct: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI Sbjct: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN Sbjct: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS Sbjct: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 >gi|298293854|ref|YP_003695793.1| transcription termination factor NusA [Starkeya novella DSM 506] gi|296930365|gb|ADH91174.1| transcription termination factor NusA [Starkeya novella DSM 506] Length = 536 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 319/512 (62%), Positives = 399/512 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI EI+P TG++ Sbjct: 3 VVSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGAETDIHAEISPRTGEL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++V+N +I L AR +P+ +G ++D LPP DFGR+A QSAKQVI+Q Sbjct: 63 RLARHLLVVDQVDNPAVEIDLDGARRLNPAAQVGDSIADTLPPFDFGRIAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI +G VKRVEYGNV+VDLG + +RRDE + RE + GD Sbjct: 123 KVREAERDRQYEEYKDRIGEITNGAVKRVEYGNVVVDLGRGEASLRRDELLPREVFKTGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+A Sbjct: 183 RIRAYVYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V KVV Sbjct: 243 VTSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDVATFIVNALAPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT+ Sbjct: 303 LDEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFAERTK 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+++DE++ LL +EGFA VEE+A V ++E+ASIEGFDE+TA E+Q RA +L I Sbjct: 363 MFAEALDLDEMMGQLLASEGFASVEEIAYVPVNELASIEGFDEDTAQELQNRALNHLAQI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + L + +ELGV + L +PG+ S + VA GEN IKT+EDLAGC+ DDL GW+E K G Sbjct: 423 EADLDARRKELGVEDALREVPGVTSAMLVAFGENDIKTVEDLAGCATDDLTGWTERKDGE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L ++ E++I+ AR + GWI Sbjct: 483 TVRIAGALDGFDLSREDAEALIMQARVRAGWI 514 >gi|153008085|ref|YP_001369300.1| transcription elongation factor NusA [Ochrobactrum anthropi ATCC 49188] gi|151559973|gb|ABS13471.1| NusA antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 535 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 342/518 (66%), Positives = 419/518 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFTERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGFA VEELA V+ EIASI+GFDE+TA EIQ RAREYL+ I+ Sbjct: 363 FMDALNVDEMVGQVLASEGFASVEELAYVEPGEIASIDGFDEDTAGEIQERAREYLDRIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV +EL +PGI + + VA+GE+G+KTMED AG +VDDL+GW E K G Sbjct: 423 SEQDDRRKELGVEDELRELPGITTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G SS + E M++ AR K GWI +E++A Sbjct: 483 VAHSGIFSSFDVSRVDAEQMVLTARLKAGWITEEELAS 520 >gi|146337225|ref|YP_001202273.1| transcription elongation factor NusA [Bradyrhizobium sp. ORS278] gi|146190031|emb|CAL74023.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Bradyrhizobium sp. ORS278] Length = 535 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 327/528 (61%), Positives = 409/528 (77%), Gaps = 3/528 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + ++ASIEGFDEETA E+Q RARE+LE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLASIEGFDEETATELQTRAREFLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478 + L+ K +ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW E K Sbjct: 423 QEAELEAKRKELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWVERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 G KF G L L +D E+M++ AR K GWI + +A E +D + Sbjct: 483 GEQTKFAGILDGLDVSRDDAEAMVMQARVKAGWITEADLAKGEAEDEA 530 >gi|150398625|ref|YP_001329092.1| transcription elongation factor NusA [Sinorhizobium medicae WSM419] gi|150030140|gb|ABR62257.1| NusA antitermination factor [Sinorhizobium medicae WSM419] Length = 552 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 356/517 (68%), Positives = 439/517 (84%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ S+IR +INP+TG+I Sbjct: 13 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSESNIRADINPKTGEIR 72 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI +++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 73 LQRLLEVVEKAEDYSTQIPIELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 132 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 133 VREAERDRQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 192 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++++YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV Sbjct: 193 VRAFVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 252 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD A+F++NAL+PA V KVVL Sbjct: 253 VSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDPASFIVNALQPAEVAKVVL 312 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERTQ Sbjct: 313 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFNERTQL 372 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA VEELA V + EIASIEGFDEET+ EIQ RAREYLE I+ Sbjct: 373 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEIASIEGFDEETSNEIQTRAREYLEKIE 432 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL +I G++S++ VALGE GIKT+ED AGC+ DDL+GW E K G Sbjct: 433 AEMDAKRKELGVADELRTINGLNSQMLVALGEEGIKTIEDFAGCAADDLVGWVERKDGET 492 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++F+G S L +++ E+MI+ AR GWI +E +A Sbjct: 493 KRFEGTFSKLEVTREEAEAMIVQARLAAGWITEEDLA 529 >gi|319779771|ref|YP_004139247.1| transcription termination factor NusA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165659|gb|ADV09197.1| transcription termination factor NusA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 531 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 334/521 (64%), Positives = 422/521 (80%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDSGEIASIDGFDEDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K + LGVS+EL IPG+ + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDDKRKALGVSDELREIPGVTTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 + + G L++ G + E M++ AR K GWI ++++A EE Sbjct: 482 TKVYPGVLANHGVTRADAEQMVLAARLKAGWITEDELAAEE 522 >gi|121602814|ref|YP_989501.1| transcription elongation factor NusA [Bartonella bacilliformis KC583] gi|120614991|gb|ABM45592.1| transcription elongation protein nusA [Bartonella bacilliformis KC583] Length = 537 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 321/523 (61%), Positives = 416/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +ISL A IG + D LP MDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQIVDIVEDYTTEISLSDALKHQADAKIGDFIFDLLPSMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + V+RRDE I E+ GDR Sbjct: 123 VRDAERNHQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAVVRRDELIPCESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHREPRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KV+L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VD+I+ ++ +EGF+ +EE+A V + EIASI+GFD E A EIQ RAREYLE + Sbjct: 363 FMESLDVDKIVGQVMASEGFSSIEEIAYVGLDEIASIDGFDSEIATEIQKRAREYLENKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K + L V++EL ++PGI + + +A+GE+G+KTM+D AG +VDDL+GW E K G Sbjct: 423 KELDEKRKSLCVADELQTLPGITNAMLIAIGEDGVKTMDDFAGYAVDDLVGWRERKKGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+MI++AR + GWI + + E+ ++ Sbjct: 483 QNFPGILTPFDITRADAEAMILYARVQAGWITQTDLTTEDPEE 525 >gi|222147147|ref|YP_002548104.1| transcription elongation factor NusA [Agrobacterium vitis S4] gi|221734137|gb|ACM35100.1| N-utilization substance protein A [Agrobacterium vitis S4] Length = 538 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 349/512 (68%), Positives = 424/512 (82%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QI+L++ARDR+ +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVETVEDYGTQIALELARDRNVDAKLGDYIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEII+GTVKRVEYGNVIVDLG +G+IRRDE I RE +R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIINGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRETMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+G++Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGVIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSADPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EIASI+GFD +TA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLEEIASIDGFDGDTAEEIQTRAREYLEKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K + LGVS+EL SI G+ +++ VALG +GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AELDAKRKALGVSDELRSIDGMTTQMLVALGGDGIKTVEDFAGCAADDLIGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +KF+G S + + + E MI+ AR GWI Sbjct: 483 KKFEGLFSKIDISRTEAEQMIVQARLAAGWIT 514 >gi|222084328|ref|YP_002542857.1| N-utilization substance protein A [Agrobacterium radiobacter K84] gi|221721776|gb|ACM24932.1| N-utilization substance protein A [Agrobacterium radiobacter K84] Length = 534 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 358/524 (68%), Positives = 436/524 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE+ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A FV+NAL+PA V+KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSNEPANFVVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+FNERT Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V++ EIASI+GFDEETA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAAVEELAYVELDEIASIDGFDEETAQEIQQRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K + LGV++EL I G+ +++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDEKRKALGVADELRQINGMTAQMMVALGEDGIKTIEDFAGCAADDLVGWSERKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +KF+G S L + + E MI+ AR GWI + +A+E + A Sbjct: 483 KKFEGLFSKLEISRVEAEQMIVQARLSAGWITEADLANETEEVA 526 >gi|254718200|ref|ZP_05180011.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|265983158|ref|ZP_06095893.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|306837714|ref|ZP_07470583.1| transcription termination factor NusA [Brucella sp. NF 2653] gi|306842729|ref|ZP_07475371.1| transcription termination factor NusA [Brucella sp. BO2] gi|306843580|ref|ZP_07476181.1| transcription termination factor NusA [Brucella sp. BO1] gi|264661750|gb|EEZ32011.1| transcription elongation factor NusA [Brucella sp. 83/13] gi|306276271|gb|EFM57971.1| transcription termination factor NusA [Brucella sp. BO1] gi|306287073|gb|EFM58578.1| transcription termination factor NusA [Brucella sp. BO2] gi|306407272|gb|EFM63482.1| transcription termination factor NusA [Brucella sp. NF 2653] Length = 537 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 341/522 (65%), Positives = 423/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 423 AEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 483 INHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 524 >gi|319403631|emb|CBI77216.1| transcription elongation protein [Bartonella rochalimae ATCC BAA-1498] Length = 537 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 322/523 (61%), Positives = 416/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++ Sbjct: 303 DEDAERIEVVVPGDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K +ELGVS+EL ++PGI + + V +GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKELGVSDELQTLPGITNAMLVVIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI + + + + Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQADLIKQHPVE 525 >gi|323136838|ref|ZP_08071919.1| NusA antitermination factor [Methylocystis sp. ATCC 49242] gi|322398155|gb|EFY00676.1| NusA antitermination factor [Methylocystis sp. ATCC 49242] Length = 532 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 334/522 (63%), Positives = 415/522 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP TG++ Sbjct: 3 VSANRLEILQIADAVAREKSIDRSIVIASMEDALQKAARSRYGQETEVRAEINPRTGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLLEVV++VEN QI+++ AR R+P+ G +S+ LPP DFGR+A QSAKQ+I+QK Sbjct: 63 FSRLLEVVDKVENDATQIAIEDARKRNPAAQAGDWISETLPPFDFGRIAAQSAKQIIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG +GVIRRDE I RE RPGDR Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEGVIRRDEMIPREMFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++VK+V+RDPGSRAK+AV Sbjct: 183 ARAYVYDVRREQRGPQIFLSRTHPQFMAKLFKQEVPEIYDGVIEVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL Sbjct: 243 VSRDSSIDPVGACVGMRGSRVQAVVQELQGERIDIIPWSVDAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 DEDSSRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTNT 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM AI+VDE++ LL +EGF VE+LA V++SE+ASIEGFDE+TA EIQ RAR YL+ ++ Sbjct: 363 FMTAIDVDEVVGRLLASEGFRSVEDLAYVELSELASIEGFDEDTATEIQNRARAYLDKLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + ELGVS+EL I G+ + + V LGEN +KTMED AGC DDL+GWSE K G Sbjct: 423 AENEARRVELGVSDELREIDGMTTAMMVRLGENDVKTMEDFAGCVPDDLVGWSEKKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 K +GF + +++ E+MI+ AR ++GWIEK E Sbjct: 483 TKHEGFFEGIELSREEAEAMIMAARVRVGWIEKPAPEAETEA 524 >gi|110636252|ref|YP_676460.1| transcription elongation factor NusA [Mesorhizobium sp. BNC1] gi|110287236|gb|ABG65295.1| NusA antitermination factor [Chelativorans sp. BNC1] Length = 534 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 335/518 (64%), Positives = 416/518 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSID+ +V+ MAD+IQKAARS YG ++IR +IN +TG++ Sbjct: 3 VSANRLELLQIADAVAREKSIDKTIVIQAMADAIQKAARSRYGQETNIRADINAQTGEMK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RL+EVVE VE QIS+ AR R+P G +++ LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLMEVVENVEEPARQISIVDARTRNPDAQAGDFIAEQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I RE+ + GDR Sbjct: 123 VREAERDRQYEEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDELIPRESFKYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++A+F++NAL+PA V+KVVL Sbjct: 243 ISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWNENAASFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESQRRQKEFTERSNL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ +L +EGF VEE+A V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 363 FMDALNVDEMVGQVLASEGFTSVEEIAYVDADEISSIDGFDEDTAEEIQARAREYLERIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGVS++L IPG+ + + V LGE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 AERDAKRRELGVSDDLREIPGMTTAMMVKLGEDGVKTIEDFAGYAVDDLVGWRERKDGEN 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 + F G S L + + E M++ AR KMGWI ++ + Sbjct: 483 KFFPGVFSDLDLSRAEAEQMVVAARLKMGWISEDDLQS 520 >gi|158421642|ref|YP_001522934.1| transcription elongation factor NusA [Azorhizobium caulinodans ORS 571] gi|158328531|dbj|BAF86016.1| transcription termination factor [Azorhizobium caulinodans ORS 571] Length = 532 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 320/512 (62%), Positives = 404/512 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAARS YG +DI EINP TG++ Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARSRYGQETDIHAEINPRTGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK Sbjct: 64 LARHLLVVDEVENSATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++ E+++G VKRVEYGNV+VDLG + ++RRDE + RE ++ GDR Sbjct: 124 VREAERDRQYDEFKDRISEVVNGLVKRVEYGNVVVDLGRGEAILRRDELLPREVVKTGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YIYDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV Sbjct: 184 IRAYIYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERT+ Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTKM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+++DE++ LL +EGF VEE+A V +SE+ASIEGFDEETA E+Q RA ++L ++ Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVPVSELASIEGFDEETAAELQARALKHLSDVE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV ++L ++PG+ SK+ VA G+N IK++EDLAGC+ DDL+GW+E K G Sbjct: 424 EALDNERRELGVEDDLKTVPGVTSKMLVAFGKNDIKSVEDLAGCATDDLVGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +F G L ++ ES+I+ AR GWI Sbjct: 484 VRFPGALDGFELSREDAESLIMQARIAAGWIS 515 >gi|319405101|emb|CBI78705.1| transcription elongation protein [Bartonella sp. AR 15-3] Length = 537 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 324/523 (61%), Positives = 418/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDIVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F+ER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFSERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAR+YLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFISIEEIAYVDLEEIKSIDGFDHDTASEIQNRARKYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL +PGI + + VA+GE+GIKTMED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKKLGVSDELQLLPGITNAMLVAIGEDGIKTMEDFAGYAVDDLVGWREFKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI + + + + Sbjct: 483 QNFPGILTPFDVTRADAEAMVLAARVQAGWINQTDLIKQHPVE 525 >gi|209883664|ref|YP_002287521.1| transcription elongation factor NusA [Oligotropha carboxidovorans OM5] gi|209871860|gb|ACI91656.1| transcription elongation factor NusA [Oligotropha carboxidovorans OM5] Length = 541 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 326/517 (63%), Positives = 409/517 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDSKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISL+ A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVETVENPANQISLEDAKRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+ Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGF+ VEEL V + E+A IEGFDEETA E+Q RAREYLE ++ Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELVLVDVRELAGIEGFDEETANELQSRAREYLEHLE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L+ K +ELGV + + +PGI KI V LGEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 424 AELEAKRKELGVEDAMKDVPGITGKILVKLGENDVKTVEDLAGCATDDLVGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K DGFL + T +D+ E++I+ AR GWI + +A Sbjct: 484 VKHDGFLDASETSRDEAEALIMQARLAAGWITEADLA 520 >gi|170750127|ref|YP_001756387.1| NusA antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656649|gb|ACB25704.1| NusA antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 545 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 320/513 (62%), Positives = 401/513 (78%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P+TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIDAMEEAIAKAARSRYGAETDVHAEIDPKTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQFDEYKDRIGEILNGIVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++SY++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRSYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDEATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V I E++ I+G DEET EIQ RA+++L I Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAYVDIQELSGIQGLDEETGTEIQARAQDHLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G + Sbjct: 423 EQAHDARRTELGVSDELREIEGITTPMMVALGENDVKTVEDLAGCATDDLVGYTEGRGPD 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G+L + + E++I+ AR K GWIE Sbjct: 483 AVRHAGYLDGFDLSRAEAEALIMAARLKAGWIE 515 >gi|260461982|ref|ZP_05810227.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259032229|gb|EEW33495.1| NusA antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 531 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 332/513 (64%), Positives = 416/513 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFDE+TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDEDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K + LGVS+EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDDKRKALGVSDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + + G L++ G + E M+++AR K GWI Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWIT 514 >gi|316931577|ref|YP_004106559.1| transcription termination factor NusA [Rhodopseudomonas palustris DX-1] gi|315599291|gb|ADU41826.1| transcription termination factor NusA [Rhodopseudomonas palustris DX-1] Length = 537 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 326/524 (62%), Positives = 411/524 (78%), Gaps = 3/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDEI+ LL +EGF VEELA V E+ASIEGFDEETA E+Q RAREYL+ Sbjct: 363 RAFMDALNVDEIVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRAREYLDQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K Sbjct: 423 IESELEARRTELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 G K+ G L + ++ E +I+ AR K GWI++ ++A +E Sbjct: 483 GEPVKYPGILDGMELSREDAEHLIMQARVKAGWIDESELASDEE 526 >gi|220924484|ref|YP_002499786.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060] gi|219949091|gb|ACL59483.1| NusA antitermination factor [Methylobacterium nodulans ORS 2060] Length = 536 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 325/525 (61%), Positives = 408/525 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R + VV++VEN +I L+ AR +P+ +G V++D LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHMLVVDQVENDAREIDLETARRHNPAAQVGDVIADTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AERDRQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE+I RE RPGD Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNVIVDLGRGEGIVRRDESIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFIERTN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RAR+YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQTRARDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + +ELGVS+EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 ESENDARRKELGVSDELREIDGITTPMLVALGENDVKTIEDLAGCATDDLVGYTEGRGAE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G+L + + E+MI+ AR + GWIE A E + A Sbjct: 483 AVRHAGYLDGFDLSRAEAEAMIVAARVRAGWIEAAPEAPAEDEQA 527 >gi|154244252|ref|YP_001415210.1| transcription elongation factor NusA [Xanthobacter autotrophicus Py2] gi|154158337|gb|ABS65553.1| NusA antitermination factor [Xanthobacter autotrophicus Py2] Length = 531 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 314/512 (61%), Positives = 405/512 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAARS YG +DI +IN +TG++ Sbjct: 4 VSANRLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARSRYGQETDIHADINAKTGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R L VV+EVEN +I+L AR +P+ +G ++D LPP DFGR+A QSAKQVI+QK Sbjct: 64 LARHLLVVDEVENTATEITLDGARRHNPAAQVGDTIADTLPPFDFGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD++G++++G VKRVEYGNV+VDLG +G++RRDE + RE ++ GDR Sbjct: 124 VREAERDRQYDEYKDRIGDVVNGLVKRVEYGNVVVDLGRGEGILRRDELLPRETVKTGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+AV Sbjct: 184 IRAYVYDVRREPRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD ATF++NAL PA V KVVL Sbjct: 244 ISRDQSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNPDIATFIVNALAPAEVVKVVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLA+QLTGW IDI+TE+E+S RQK+F ERT+ Sbjct: 304 DEDRERIEVVVPDAQLSLAIGRRGQNVRLATQLTGWDIDIMTEQEESERRQKEFAERTKM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+++DE++ LL +EGF VEE+A V++ E+ASIEGFDE+TA E+Q RA ++L ++ Sbjct: 364 FAEALDLDEMMGQLLTSEGFTSVEEIAYVQLQELASIEGFDEDTAAELQARALKHLAEVE 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + ELGV ++L S+PG+ SK+ VA GEN IK++EDLAGC+ DDL+GW+E K G Sbjct: 424 EALDARRIELGVDDDLKSVPGVTSKMLVAFGENDIKSVEDLAGCATDDLIGWTERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G L ++ E++++ AR GWIE Sbjct: 484 VRHAGALDGFELSREDAEALVMQARVAAGWIE 515 >gi|239833211|ref|ZP_04681540.1| transcription termination factor NusA [Ochrobactrum intermedium LMG 3301] gi|239825478|gb|EEQ97046.1| transcription termination factor NusA [Ochrobactrum intermedium LMG 3301] Length = 535 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 336/512 (65%), Positives = 415/512 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL ARDR+P IG ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEHVEDYATQISLFTARDRNPDAQIGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHP FM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPSFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSTL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA +EELA V+ EIASI+GFD++TA EIQ RAREYL+ I+ Sbjct: 363 FMEALDVDEMVGQVLASEGFASIEELAYVEPGEIASIDGFDDDTAGEIQERAREYLDRIE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV++EL +PGI + + VA+GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 SEQDNRRKELGVADELRELPGITTAMLVAVGEDGVKTIEDFAGYAVDDLVGWRERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G S + E M++ AR K GWI Sbjct: 483 VAHSGIFSPFDVSRVDAEQMVLTARLKAGWIT 514 >gi|319408013|emb|CBI81667.1| transcription elongation protein [Bartonella schoenbuchensis R1] Length = 537 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 334/523 (63%), Positives = 424/523 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A I IG DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVDIVEDYTNEIALSDALKHQVDIKIGDFFCDPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD+Q+ EFK+KVGEIISGTVKRVEYGNVIVDLG + +IRRDE I RE+ GDR Sbjct: 123 VRDAERDQQFEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIIRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV REQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE+E+S NRQK+FNER++ Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDILTEQEESENRQKEFNERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE++ ++ +EGFA +EE+A V + EIASI+GFD ETA EIQ RAREYLE + Sbjct: 363 FMESLDVDEMVGQVMASEGFASIEEIAYVDLEEIASIDGFDNETASEIQSRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGV++EL S+PG+ + + VA+GE+GIKT++D AG +VDDL+GW E KGG + Sbjct: 423 KELDEKRKKLGVADELRSLPGMTNAMLVAIGEDGIKTIDDFAGYAVDDLIGWRERKGGQV 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+MI+ AR + GWI + E + Sbjct: 483 QNFSGILTPFDITRTDAEAMILAARVQAGWICQTDCVVENSTE 525 >gi|154254057|ref|YP_001414881.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154158007|gb|ABS65224.1| NusA antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 536 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 327/519 (63%), Positives = 409/519 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR+VV+ MA++IQKAARS YG ++IR INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREVVIEAMAEAIQKAARSRYGAENEIRARINPQTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV+ VEN QI LK A+ R+P+ +G ++ D LPP+DFGR+A Q+AKQVI+QK Sbjct: 63 LVRLLEVVDTVENDAVQIDLKSAQRRNPAAQLGDLIEDELPPVDFGRIAAQTAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY E+KD++GEI++G VKRVEYGNVIVDLG + ++RRDE + RE R GDR Sbjct: 123 VRDAERERQYDEYKDRIGEIVNGIVKRVEYGNVIVDLGRGEAIVRRDELLPRETFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVRREQRGPQ+ LSR+HPQFM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRREQRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++N L PA V KVVL Sbjct: 243 LSNDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSPDAATFIVNGLAPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ +F RT Sbjct: 303 DEDAQRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQAEFLSRTAT 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A++VDE+IA LL +EGFA +EE+A V + EIA IEGFDE+TA EIQ RA EY+E + Sbjct: 363 FAEALDVDEMIAQLLASEGFASIEEVAYVDLDEIAEIEGFDEDTAQEIQSRALEYIERQN 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K RELGV++E+ +PG+ K+ VA GEN +KT+EDLAGC+ DDL+GW+E G Sbjct: 423 AEFDAKRRELGVADEVADVPGVTPKMMVAFGENDVKTVEDLAGCATDDLIGWNETVNGER 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 + G + ++ +I+ AR K GWI + +A + Sbjct: 483 KHQQGIIEGFDLTAEEANDLIMQARLKAGWITEADLASD 521 >gi|170740831|ref|YP_001769486.1| NusA antitermination factor [Methylobacterium sp. 4-46] gi|168195105|gb|ACA17052.1| NusA antitermination factor [Methylobacterium sp. 4-46] Length = 544 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 327/525 (62%), Positives = 407/525 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P TG + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRSIVIGAMEEAIAKAARSRYGAETDVHAEIDPRTGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VVE+VEN +I L+ AR +P+ IG V++D LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVEQVENDAREIDLETARRHNPAAQIGDVIADTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AERDRQY E+KD++GEI++G VKRVEYGN IVDLG +G++RRDE+I RE RPGD Sbjct: 123 KVRDAERDRQYEEYKDRIGEIVNGLVKRVEYGNTIVDLGRGEGIVRRDESIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVRRE RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRREVRGPQIFLSRSHPQFMAKLFAQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERTN 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FMQA++VDE + LL AEGF VEE+A V+ +IA+I+G DEET EIQ RA+EYL I Sbjct: 363 TFMQALDVDETVGQLLAAEGFRSVEEIAYVEPGDIANIQGLDEETGAEIQSRAQEYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN ++T+EDLAGC+ DDL+G++E +G Sbjct: 423 EAENDARRRELGVEDELREIDGITTPMMVALGENEVRTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + G+L + + E+MI+ AR + GWIE + A E + A Sbjct: 483 AVRHPGYLDGFDLSRAEAEAMIVAARVRAGWIEAPEEAPAEDEQA 527 >gi|319406547|emb|CBI80189.1| transcription elongation protein [Bartonella sp. 1-1C] Length = 537 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 323/523 (61%), Positives = 416/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VE+YT +I+L A R +G +SD LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKVVDVVEDYTTEIALSDALKRKEDAKVGDFLSDLLPPMDFGRIATQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+ Q+ EFK+K+GEIISGTVKRVEYGNVIVD+G + ++RRDE I RE+ GDR Sbjct: 123 VRDAERNHQFEEFKNKIGEIISGTVKRVEYGNVIVDIGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQV LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQVFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NR K+F ER++ Sbjct: 303 DEDAERIEVVVPSDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRHKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE++ ++ +EGF +EE+A V + EI SI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMETLDVDEMVGQVMASEGFTSIEEIAYVNLEEIESIDGFDHDTASEIQNRAREYLEHKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K +ELGVS+EL ++P I + + VA+GE+G+KT+ED AG +VDDL+GW E K G Sbjct: 423 KELNEKRKELGVSDELQTLPSITNAMLVAIGEDGVKTIEDFAGYAVDDLVGWRECKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI + + + + Sbjct: 483 QNFPGILTPFDITRADAEAMVLAARVQAGWINQADLIKQHPVE 525 >gi|118590498|ref|ZP_01547900.1| transcription elongation factor NusA [Stappia aggregata IAM 12614] gi|118436961|gb|EAV43600.1| transcription elongation factor NusA [Stappia aggregata IAM 12614] Length = 551 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 328/512 (64%), Positives = 419/512 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VV+ VEN + ISL+ A+ R+P IG +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVDSVENVSTDISLEDAQARNPEASIGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGE+++G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYEEFKDRVGEVVNGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEEAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFLERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD++TAVEIQ RAR+YL ++ Sbjct: 363 FMEALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDDTAVEIQARARDYLAELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ LGV+++L SI G+ + + VALG++GIKTMEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDEERVSLGVADDLRSIDGLTTAMLVALGKDGIKTMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++F+G LS + + E++++ AR GWI Sbjct: 483 KRFEGALSEFDMSRAEAENVVMAARLAAGWIT 514 >gi|315122010|ref|YP_004062499.1| transcription elongation factor NusA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495412|gb|ADR52011.1| transcription elongation factor NusA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 536 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 448/523 (85%), Positives = 489/523 (93%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSIDRDVVLSVMA+SIQKAARSLYGT+SDIRVEIN ETG+I Sbjct: 2 VVSANRLELLQIADAVACEKSIDRDVVLSVMAESIQKAARSLYGTLSDIRVEINRETGNI 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ R LEVVEEVENY CQISL++ARDRDP+I+IG V+ DPLPP+DFGRVAVQSAKQVIIQ Sbjct: 62 SICRSLEVVEEVENYACQISLQLARDRDPNINIGDVLFDPLPPIDFGRVAVQSAKQVIIQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG+SDGVIRRDETISRENLR GD Sbjct: 122 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGHSDGVIRRDETISRENLRLGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+SYIYDVRREQRGPQVLLSRTHPQFMVKLF++EVPEIYNGIVQ+KAVSRDPGSRAKLA Sbjct: 182 RVRSYIYDVRREQRGPQVLLSRTHPQFMVKLFYLEVPEIYNGIVQIKAVSRDPGSRAKLA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVV ELRDEKIDIVVWSPD ATFVIN+LRPAIVTKVV Sbjct: 242 VFSSDSSIDPVGACVGMRGSRVQAVVGELRDEKIDIVVWSPDPATFVINSLRPAIVTKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEV+VPK+QLSLAIGRRGQNVRLASQLTGW IDI+TEEEDS+NRQK FNERTQ Sbjct: 302 LDEDVGRIEVVVPKDQLSLAIGRRGQNVRLASQLTGWAIDIVTEEEDSVNRQKHFNERTQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEII HLL AEGF+D+EELACVK+SEIASIEGFDEETA EIQGRAREY+EG+ Sbjct: 362 FFMQAINVDEIIGHLLAAEGFSDIEELACVKLSEIASIEGFDEETASEIQGRAREYMEGL 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++KI+ LGVSEEL SIPG++++I VALGENGIKTMEDLAGCSVDDLLGW E K G Sbjct: 422 EVARREKIKGLGVSEELFSIPGMNTEIGVALGENGIKTMEDLAGCSVDDLLGWGEVKNGK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 +E F+GFLS LG K+Q ESMIIHARY +GWI +E +ADE V Sbjct: 482 VENFEGFLSQLGVLKEQAESMIIHARYHLGWIVREDIADESVD 524 >gi|15887443|ref|NP_353124.1| transcription elongation factor NusA [Agrobacterium tumefaciens str. C58] gi|15154956|gb|AAK85909.1| N-utilization substance protein A [Agrobacterium tumefaciens str. C58] Length = 538 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 349/516 (67%), Positives = 432/516 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVEAAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++VDE++ +L +EGFA VEELA V + EI SI+GFDE+TA EIQ RAREYLE ++ Sbjct: 363 FMEALDVDEMVGQVLASEGFAQVEELAYVDLDEITSIDGFDEDTADEIQTRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDAKRKELGVTDELRQIDGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 +KF+G S L + + E+M++ AR GWI E++ Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEEL 518 >gi|13474627|ref|NP_106196.1| transcription elongation factor NusA [Mesorhizobium loti MAFF303099] gi|14025381|dbj|BAB51982.1| N utilization substance protein A [Mesorhizobium loti MAFF303099] Length = 531 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 330/512 (64%), Positives = 416/512 (81%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EKSID+ +V++ MAD+IQKAARS YG ++IR +INP TG++ Sbjct: 2 VVSANRLELLQIADAVAREKSIDKSIVIAAMADAIQKAARSRYGQETNIRADINPNTGEM 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L RL+EVVE+V++Y QI++ AR+R+P +G +++ LPPMDFGR+A QSAKQVI+Q Sbjct: 62 KLQRLMEVVEKVDDYATQIAISSARERNPDAQLGDFIAEQLPPMDFGRIAAQSAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQY E+KD++GEI++GTVKRVEYGNVIVDLG + +IRRDE I REN + GD Sbjct: 122 KVREAERDRQYDEYKDRIGEIVNGTVKRVEYGNVIVDLGRGEAIIRRDELIPRENYKYGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+A Sbjct: 182 RVRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +A+F++NAL+PA V KVV Sbjct: 242 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSPSAASFIVNALQPAEVAKVV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ER+ Sbjct: 302 LDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFVERSA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE++ +L +EGF VEE+A V EIASI+GFD++TA EIQ RAREYLE I Sbjct: 362 LFMEALDVDEMVGQVLASEGFTSVEEVAYVDAGEIASIDGFDDDTASEIQTRAREYLEKI 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +K + LGV +EL IPGI + + V LGE+G+KT+ED AG + DDL GW E K G Sbjct: 422 EAEHDEKRKALGVKDELREIPGITTAMMVTLGEDGVKTIEDFAGYAADDLTGWKERKDGE 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + + G L++ G + E M+++AR K GWI Sbjct: 482 TKVYPGVLANHGVSRADAEQMVLNARLKAGWI 513 >gi|49475029|ref|YP_033070.1| transcription elongation factor NusA [Bartonella henselae str. Houston-1] gi|49237834|emb|CAF27029.1| N utilization substance protein A [Bartonella henselae str. Houston-1] Length = 528 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 325/523 (62%), Positives = 419/523 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ +E+YT +I+L A R +G +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDIIEDYTSEITLSDALKRQADAKVGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAEREQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++++DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVHDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RA+EYLE + Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQNRAQEYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGV +EL +PG+ S + VA+GE+G+KTMED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVCDELRMLPGMTSAMLVAIGEDGVKTMEDFAGYAVDDLAGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI + + E + Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWINQADLVTENSAE 525 >gi|325291533|ref|YP_004277397.1| transcription elongation factor NusA [Agrobacterium sp. H13-3] gi|325059386|gb|ADY63077.1| transcription elongation factor NusA [Agrobacterium sp. H13-3] Length = 538 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 353/524 (67%), Positives = 436/524 (83%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YG+ ++IR +IN +TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGSETNIRADINSKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVETAEDYSTQIPLELARDRNPDAKLGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQYDEFKDRIGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENMRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+Q+K+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + A+F++NAL+PA V KVVL Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQEPASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+FNERT Sbjct: 303 DEESERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTEQEESERRQKEFNERTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE++ +L +EGFA VEELA V + EI+SI+GFD++TA EIQ RAREYLE ++ Sbjct: 363 FMDALDVDEMVGQVLASEGFAQVEELAYVDLGEISSIDGFDDDTADEIQTRAREYLERLE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K +ELGV++EL I G+ S++ VALGE+GIKT+ED AGC+ DDL+GWSE K G Sbjct: 423 AEMDAKRKELGVADELRQIEGLTSQMMVALGEDGIKTIEDFAGCAADDLVGWSERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 +KF+G S L + + E+M++ AR GWI E +A EE DA Sbjct: 483 KKFEGIFSKLDVSRVEAENMVVQARLLAGWITAEDLASEEEVDA 526 >gi|188582066|ref|YP_001925511.1| NusA antitermination factor [Methylobacterium populi BJ001] gi|179345564|gb|ACB80976.1| NusA antitermination factor [Methylobacterium populi BJ001] Length = 560 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 320/524 (61%), Positives = 405/524 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIADAVA EK IDR +V+ M ++I KAARS YG +D+ EI+P++G + Sbjct: 3 VVSANRLELLQIADAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDPKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P +G V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALVGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 VFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I G+ + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGVTTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + G+L + + E++I+ AR GWIE + E D Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLHAGWIEALPEPEGEAAD 526 >gi|27375896|ref|NP_767425.1| transcription elongation factor NusA [Bradyrhizobium japonicum USDA 110] gi|27349034|dbj|BAC46050.1| N-utilization substance protein A [Bradyrhizobium japonicum USDA 110] Length = 536 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 330/529 (62%), Positives = 412/529 (77%), Gaps = 4/529 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN++ QISL A+ +P +G ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENHSNQISLVDAQRANPGAQVGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V I E+A IEGFDEETA E+Q RAREYLE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDIKELAGIEGFDEETAQELQNRAREYLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 + L+ K ELGV + L +PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K G Sbjct: 423 QEAELEAKRVELGVEDALKDVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA-DEEVQDAS 526 G K+ G L + +D E+MI+ AR K GWI + +A E +AS Sbjct: 483 GETTKYPGALDGIEISRDDAEAMIMQARVKAGWITEADLAKPAEEAEAS 531 >gi|39933515|ref|NP_945791.1| transcription elongation factor NusA [Rhodopseudomonas palustris CGA009] gi|39647361|emb|CAE25882.1| putative NusA protein, transcriptional termination factor [Rhodopseudomonas palustris CGA009] Length = 537 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 325/524 (62%), Positives = 410/524 (78%), Gaps = 3/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 K+ G L + ++ E +I+ AR K GWI++ ++A EE Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEED 526 >gi|254502609|ref|ZP_05114760.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11] gi|222438680|gb|EEE45359.1| NusA N-terminal domain family [Labrenzia alexandrii DFL-11] Length = 550 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 333/519 (64%), Positives = 421/519 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ M D+IQKAARS YGT +++R EINP+TGDI Sbjct: 3 ISANRLELLQIADAVAREKSIDRMIVINAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +ISL A R+P +G +++PLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVETVENVSTEISLDDAAARNPEAGVGDFIAEPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD+VGE+I+G VKR EYGNVIVDLG +G++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEFKDRVGEVINGVVKRAEYGNVIVDLGRGEGIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ IYDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 183 IRAIIYDVRREQRGPQIFLSRTHPQFMSKLFAQEVPEIYDGVIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDEAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S R K+F ER+Q Sbjct: 303 DEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESERRSKEFQERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ LL EGF VEE+A V+I EI+ IEGFD++TAVEIQ RAR++L ++ Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVEIEEISMIEGFDDDTAVEIQARARDFLNELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ ELGV +EL SI G+ S + VALG++ +KTMEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDEERIELGVLDELRSIDGLTSAMLVALGKDDVKTMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 +++DG LS+ + E+M++ AR GWI +E++A + Sbjct: 483 KRYDGALSAYDVSRADAENMVMAARLAAGWITEEELAAQ 521 >gi|299133375|ref|ZP_07026570.1| transcription termination factor NusA [Afipia sp. 1NLS2] gi|298593512|gb|EFI53712.1| transcription termination factor NusA [Afipia sp. 1NLS2] Length = 535 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 327/517 (63%), Positives = 407/517 (78%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISLK A+ +P+ IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVETVENAANQISLKDAQRANPTAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYG+VIVDLG + ++RRDE + RE LR GDR Sbjct: 124 VREAERDRQYQEFKDRIGEIVNGIVKRVEYGSVIVDLGRGEAIVRRDEMLPREALRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 IRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T+ Sbjct: 304 DEDRERIEVVVPDTQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENSTRV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+NVDE++ LL +EGF+ VEELA V + E+A IEGFDEETA E+Q RAREYLE +D Sbjct: 364 FMEALNVDEVVGQLLASEGFSSVEELALVDVRELAGIEGFDEETANELQSRAREYLEQLD 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L+ K +ELGV + L IPG+ K+ V GEN +KT+EDLAGC+ DDL+GW E K G Sbjct: 424 AELEAKRKELGVDDALKDIPGVTGKMLVKFGENDVKTVEDLAGCATDDLVGWVERKDGET 483 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 K GFL + T +D+ E++I+ AR GWI + +A Sbjct: 484 VKHAGFLDASETSRDEAEAIIMQARLAAGWITEADLA 520 >gi|192288873|ref|YP_001989478.1| transcription elongation factor NusA [Rhodopseudomonas palustris TIE-1] gi|192282622|gb|ACE99002.1| NusA antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 537 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 325/524 (62%), Positives = 410/524 (78%), Gaps = 3/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+ G++ Sbjct: 3 VSANRLELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF + T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTT 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM A+NVDE++ LL +EGF VEELA V E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RAFMDALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I+ L+ + ELGV + L +PG+ SK+ V GEN +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 IESELEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDLVGWTERKDG 482 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 K+ G L + ++ E +I+ AR K GWI++ ++A EE Sbjct: 483 AEPVKYPGILDGMEMSREDAEHLIMQARVKAGWIDESELASEEE 526 >gi|148251679|ref|YP_001236264.1| transcription elongation factor NusA [Bradyrhizobium sp. BTAi1] gi|146403852|gb|ABQ32358.1| NusA antitermination factor [Bradyrhizobium sp. BTAi1] Length = 537 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 324/527 (61%), Positives = 408/527 (77%), Gaps = 3/527 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P G++ Sbjct: 3 VSANRLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDPRRGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN + QISL AR +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVEKVENPSNQISLDDARRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VI+DLG + +IRRDE + RE R GDR Sbjct: 123 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVILDLGRGEAIIRRDEMLPREVFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y++DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYVFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + ++A IEGFDEETA E+Q RARE+LE Sbjct: 363 RVFMESLNVDEVVGQLLASEGFTSVEELALVDLKDLAGIEGFDEETATELQTRAREFLEQ 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG- 478 + L+ K +ELGV + + ++PG+ SK+ V GEN IKT++DLAGC+ DDL+GW+E K Sbjct: 423 QEAELEAKRKELGVEDAVKTVPGVTSKMLVKFGENDIKTVDDLAGCATDDLVGWTERKDS 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K G L L +D E+M++ AR K GWI + +A E +D Sbjct: 483 GEQTKHAGILDGLEVSRDDAEAMVMQARVKAGWISEADIAKPEAEDE 529 >gi|296448218|ref|ZP_06890114.1| transcription termination factor NusA [Methylosinus trichosporium OB3b] gi|296254258|gb|EFH01389.1| transcription termination factor NusA [Methylosinus trichosporium OB3b] Length = 555 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 329/524 (62%), Positives = 418/524 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIADAVA EKSIDR +V++ M D++QKAARS YG +++R EINP++G++ Sbjct: 3 VSANRLEILQIADAVAREKSIDRQIVIASMEDALQKAARSRYGQETEVRAEINPKSGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 RLL VV+ V+N QIS++ AR R+P+ +G +S+ LPP DFGR+A QSAKQ+I+QK Sbjct: 63 FSRLLLVVDLVDNDATQISIEDARKRNPAAQVGDWISETLPPFDFGRIAAQSAKQIIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++GEI++G VKRVEYGNVI+DLG + +IRRDE I RE RPGDR Sbjct: 123 VREAERDRQYEEFKDRIGEIVNGVVKRVEYGNVIIDLGRGEAIIRRDEMIPRETFRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+ +++VK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMAKLFRQEVPEIYDNVIEVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ E+IDI+ WS D+ATF++NAL+PA V KVVL Sbjct: 243 ISRDSSIDPVGACVGMRGSRVQAVVGELQGERIDIIPWSADAATFIVNALQPAEVVKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ++F ERT+ Sbjct: 303 DEDTARIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQREFIERTKV 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM AI+VDE++ LL +EGF VE+LA V ++E+A+IEGFDE+TA EIQ RAR YLE ++ Sbjct: 363 FMNAIDVDEVVGRLLASEGFTSVEDLAFVDLAELATIEGFDEDTAAEIQNRARNYLERVE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + +ELGV +EL I GI + I V LGEN +K++EDLAGC DDL+GW+E K G Sbjct: 423 AENEARRKELGVLDELKEIDGITTAIMVKLGENDVKSIEDLAGCVPDDLVGWTEKKNGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 K GFL + +++ E+MI+ AR + GWIE A+E ++A Sbjct: 483 IKQTGFLDGVDISREEAEAMIMAARVRAGWIEAPAPAEESGEEA 526 >gi|240849883|ref|YP_002971271.1| transcription elongation factor NusA [Bartonella grahamii as4aup] gi|240267006|gb|ACS50594.1| transcription elongation factor NusA [Bartonella grahamii as4aup] Length = 543 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 326/523 (62%), Positives = 419/523 (80%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDVVEDYTTEITLSDALKHQAEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER++QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAEREQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYL+ + Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTAAEIQSRAREYLDHQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLAGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI++ + E + Sbjct: 483 QNFSGILTPFDITRADAEAMVLAARVQAGWIDQVDLVTENPVE 525 >gi|218530876|ref|YP_002421692.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4] gi|254561862|ref|YP_003068957.1| transcription termination/antitermination L factor [Methylobacterium extorquens DM4] gi|218523179|gb|ACK83764.1| NusA antitermination factor [Methylobacterium chloromethanicum CM4] gi|254269140|emb|CAX25104.1| transcription termination/antitermination L factor [Methylobacterium extorquens DM4] Length = 545 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 319/524 (60%), Positives = 405/524 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + G+L + + E++I+ AR K GWI+ + E + Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEAAE 526 >gi|90422002|ref|YP_530372.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB18] gi|90104016|gb|ABD86053.1| NusA antitermination factor [Rhodopseudomonas palustris BisB18] Length = 541 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 325/519 (62%), Positives = 407/519 (78%), Gaps = 3/519 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVEEVEN + QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LSRHMLVVEEVENSSNQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V + E+ASIEGFD+ETA E+Q RAREYLE Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELAMVDVRELASIEGFDDETANELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-G 478 ++ L+ K +ELGV + L ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 424 LESELEAKRKELGVEDALKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G KF G L + + E++I+ AR GWI + + Sbjct: 484 GEPVKFPGILDANEISRADAETLIMQARVIAGWITEADL 522 >gi|163852118|ref|YP_001640161.1| transcription termination factor NusA [Methylobacterium extorquens PA1] gi|163663723|gb|ABY31090.1| transcription termination factor NusA [Methylobacterium extorquens PA1] Length = 545 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 319/524 (60%), Positives = 405/524 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + G+L + + E++I+ AR K GWI+ + E + Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEAAE 526 >gi|240139447|ref|YP_002963922.1| transcription termination/antitermination L factor [Methylobacterium extorquens AM1] gi|240009419|gb|ACS40645.1| transcription termination/antitermination L factor [Methylobacterium extorquens AM1] Length = 545 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 319/524 (60%), Positives = 405/524 (77%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 +VSANRLELLQIA+AVA EK IDR +V+ M ++I KAARS YG +D+ EI+ ++G + Sbjct: 3 VVSANRLELLQIAEAVAREKVIDRQIVIEAMEEAIAKAARSRYGAETDVHAEIDTKSGAL 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R L VV++VEN +I+L AR +P IG V+SD LPP DFGRVA QSAKQVI+Q Sbjct: 63 RLSRHLLVVDQVENDAREITLDQARRYNPGALIGDVISDTLPPFDFGRVAAQSAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQY E+KD++GEI++G VKRVEYGNVIVDLG +G++RRDE I RE RPGD Sbjct: 123 KVRDAERARQYDEYKDRIGEILNGVVKRVEYGNVIVDLGRGEGIVRRDEMIPRETFRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++Y++DVR E RGPQ+ LSR+HPQFM KLF EVPEIY+GIV+VKAV+RDPGSRAK+A Sbjct: 183 RIRAYLFDVRSEVRGPQIFLSRSHPQFMAKLFGQEVPEIYDGIVEVKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V KVV Sbjct: 243 VISRDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEDQATFIVNALQPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F ERTQ Sbjct: 303 LDEEADRIEVVVPDDQLSLAIGRRGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++VDE + LL AEGF +VEE+A V ++E+++I+G DEET EIQ RA++YL I Sbjct: 363 AFMEALDVDETVGQLLAAEGFRNVEEIAFVDVAELSNIQGLDEETGAEIQARAQDYLARI 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + RELGV +EL I GI + + VALGEN +KT+EDLAGC+ DDL+G++E +G Sbjct: 423 EQEQDDRRRELGVEDELREIDGITTAMMVALGENEVKTVEDLAGCATDDLVGYTEGRGPE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + G+L + + E++I+ AR K GWI+ + E + Sbjct: 483 AVRHAGYLDGFELSRAEAEALIMAARLKAGWIDALPEPEGEASE 526 >gi|85714177|ref|ZP_01045166.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] gi|85699303|gb|EAQ37171.1| transcription elongation factor NusA [Nitrobacter sp. Nb-311A] Length = 535 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 321/527 (60%), Positives = 408/527 (77%), Gaps = 2/527 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV++VEN QISLK A+ +P +G ++D LPP+++GR++ QSAKQVI+QK Sbjct: 64 LTRHMLVVDQVENAANQISLKDAQRANPGAQVGDTIADTLPPLEYGRISAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMEALNVDEVVGQLLASEGFTSVEELTLVDAREIAGIEGFDDETANELQNRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + + ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELENRRKELGVDDAMKTVPGVTSKMLVKLGENDVRTVEDLAGCATDDLIGWTERKEG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 K G+ + ++ E++I+ AR GWI + +A A+ Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLIAGWITEADLAKPAEAVAT 530 >gi|115522227|ref|YP_779138.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisA53] gi|115516174|gb|ABJ04158.1| NusA antitermination factor [Rhodopseudomonas palustris BisA53] Length = 538 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 331/529 (62%), Positives = 412/529 (77%), Gaps = 5/529 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANRLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISL A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LTRHMLVVEQVENSANQISLVDAQRANPGAMIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + +IRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFENST 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+++NVDE++ LL +EGF VEELA V E+ASIEGFD+ETA E+Q RAREYLE Sbjct: 364 RVFMESLNVDEVVGQLLASEGFTSVEELALVDARELASIEGFDDETAGELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ K +ELGV +EL ++PG+ SK+ V GEN IKT+EDLAGC+ DDL+GWSE K G Sbjct: 424 LESELEAKRKELGVEDELKTVPGVTSKMLVKFGENDIKTVEDLAGCATDDLVGWSERKEG 483 Query: 480 --NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE-EVQDA 525 KF G L + + E++I+ AR K GWI + ++A E +DA Sbjct: 484 VAEPVKFPGILDANEISRADAEALIMQARVKAGWITEAELAQTVEGEDA 532 >gi|92115662|ref|YP_575391.1| transcription elongation factor NusA [Nitrobacter hamburgensis X14] gi|91798556|gb|ABE60931.1| NusA antitermination factor [Nitrobacter hamburgensis X14] Length = 536 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 322/524 (61%), Positives = 408/524 (77%), Gaps = 2/524 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV+E+EN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 64 LTRHMLVVDEIENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + V+RRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVVRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 ISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEEL V+ E+A IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMEALNVDEVVGQLLASEGFMSVEELTLVETRELAGIEGFDDETANELQSRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELDNRRKELGVDDALKTVPGVTSKMLVKLGENEVRTVEDLAGCATDDLVGWTERKDG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 K G+L + ++ E++I+ AR GWI + +A + Sbjct: 484 EAVKHAGYLDGIEVSREDAEAIIMQARLIAGWITEADLAKSAEE 527 >gi|163867513|ref|YP_001608712.1| transcription elongation factor NusA [Bartonella tribocorum CIP 105476] gi|161017159|emb|CAK00717.1| transcription elongation protein [Bartonella tribocorum CIP 105476] Length = 543 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 328/523 (62%), Positives = 418/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++IR EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIRAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDVVEDYTTEIALSDALKCQEEAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD+QY EFK+KVGEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ R GDR Sbjct: 123 VRDAERDQQYEEFKNKVGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVNDVHRETRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATFV+NAL+PA V+K++L Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFVVNALQPAEVSKIIL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDAERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEKEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A+ VDE+I ++ +EGF+ +EE+A + + EIASI+GFD +TA EIQ RAREYLE + Sbjct: 363 FMEALEVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHDTASEIQSRAREYLEHQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L K ++LGVS+EL ++PG+ S + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDDKRKKLGVSDELRTLPGMTSAMLVAVGEDGVKTIEDFAGYAVDDLTGWRERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI++ + E + Sbjct: 483 KSFSGVLTPFDITRADAEAMVLAARVQAGWIDQADLVAENPVE 525 >gi|75674221|ref|YP_316642.1| transcription elongation factor NusA [Nitrobacter winogradskyi Nb-255] gi|74419091|gb|ABA03290.1| NusA antitermination factor [Nitrobacter winogradskyi Nb-255] Length = 538 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 321/525 (61%), Positives = 407/525 (77%), Gaps = 2/525 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EK+IDR +V++ M D+I KAAR+ YG+ +D+ EI+P+TG + Sbjct: 4 VSANKLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQ 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE+VEN QISLK A+ +P IG ++D LPP+++GR++ QSAKQVI+QK Sbjct: 64 LTRHMLVVEQVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRISAQSAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + VIRRDE + RE R GDR Sbjct: 124 VREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFMVKLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 184 VRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V KVV+ Sbjct: 244 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVI 303 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQ DF T Sbjct: 304 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENAT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ +NVDE++ LL +EGF VEEL V EIA IEGFD+ETA E+Q RAREYLE Sbjct: 364 RMFMETLNVDEVVGQLLASEGFTSVEELTLVDTREIAGIEGFDDETATELQNRAREYLEQ 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + L ++PG+ SK+ V LGEN ++T+EDLAGC+ DDL+GW+E K G Sbjct: 424 LEAELENRRKELGVDDALKTVPGVTSKMLVKLGENEVRTIEDLAGCATDDLVGWTERKEG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 K G+ + ++ E++I+ AR +GWI + +A + Sbjct: 484 EAVKHAGYFDGIEISREDAEAIIMQARLSVGWINEADLAKPAEAE 528 >gi|254471028|ref|ZP_05084431.1| N-utilization substance protein A [Pseudovibrio sp. JE062] gi|211960170|gb|EEA95367.1| N-utilization substance protein A [Pseudovibrio sp. JE062] Length = 572 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 327/515 (63%), Positives = 411/515 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V++ + D+IQKAARS YGT +++R EINP+TG+I Sbjct: 3 ISANRLELLQIADAVAREKSIDRSIVIAALEDAIQKAARSRYGTETEVRAEINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +I+L A++R+P IG ++DPLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVEVVENISTEIALVDAQERNPDATIGDFMADPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERD+QY EFKD++GE+++ VKRVEYGNV+VD G + ++RRDE I RE R GDR Sbjct: 123 VREAERDQQYDEFKDRIGEVLNAVVKRVEYGNVVVDTGKGEAIVRRDELIPREIFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++ I+DVRREQRGPQV LSRTHPQFM KLF EVPEIY+G++++KAV+RDPGSRAK+AV Sbjct: 183 IRALIFDVRREQRGPQVFLSRTHPQFMAKLFAQEVPEIYDGVIEIKAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V KVVL Sbjct: 243 LSNDGSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNDDAATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQK+F R+ Sbjct: 303 DEDSERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWGIDIMTEAEESERRQKEFQIRSDL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +NVDE+++ LL +EGF VEE+A V I EI+SIEGFDEETA EIQ RAREYLE + Sbjct: 363 FQNTLNVDEMVSQLLASEGFTSVEEVAYVDIDEISSIEGFDEETADEIQARAREYLEEQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L ++ R+LGVSEEL +PG+ S + VALG++ IKTMEDLAGC+ DDL+GW+E K Sbjct: 423 AKLAEERRQLGVSEELVQVPGLTSAMLVALGKDEIKTMEDLAGCAADDLVGWTERKDKET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + +G LS + E++++ AR GWI E Sbjct: 483 IRVEGTLSGFDLSRADAEAIVMSARVAAGWISPED 517 >gi|91974715|ref|YP_567374.1| transcription elongation factor NusA [Rhodopseudomonas palustris BisB5] gi|91681171|gb|ABE37473.1| NusA antitermination factor [Rhodopseudomonas palustris BisB5] Length = 540 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 322/527 (61%), Positives = 410/527 (77%), Gaps = 3/527 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VV++VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVDKVENAANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY+EFKD++G++++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR Sbjct: 123 VREAERDRQYMEFKDRIGDVVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFQQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELAMVDIRELASIEGFDEETATELQARAAEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ L+ + +ELGV + L +PG+ SK+ V LGE +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 VETELEARRQELGVEDALKDVPGVTSKMLVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 K+ G L + +D E +I+ AR K GWI +E++A + Sbjct: 483 AEPVKYAGILDGVEMTRDDAEHLIMQARVKAGWITEEELAQTADKGE 529 >gi|86747724|ref|YP_484220.1| transcription elongation factor NusA [Rhodopseudomonas palustris HaA2] gi|86570752|gb|ABD05309.1| NusA antitermination factor [Rhodopseudomonas palustris HaA2] Length = 539 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 327/522 (62%), Positives = 408/522 (78%), Gaps = 4/522 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LELLQIADAVA EKSIDR +V++ M D+I KAAR+ YG+ +D+ EI+ + G++ Sbjct: 3 VSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIDAKKGELR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVE VEN QISLK A+ +P IG ++D LPP+++GR+A QSAKQVI+QK Sbjct: 63 LSRHMLVVENVENPANQISLKAAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY EFKD++G+I++G VKRVEYG+VIVDLG + ++RRDE + RE+ R GDR Sbjct: 123 VREAERDRQYSEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIVRRDEMLPRESFRNGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI+DVRRE RGPQ+ LSRTHPQFM KLF EVPEIY+GIV++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSS+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+NAL PA V+KVV+ Sbjct: 243 VSRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVI 302 Query: 302 DEDVGRIEVIVPK--EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 DED RIEV+VP QLSLAIGRRGQNVRLASQLTGW IDI+TE E+S RQ DF T Sbjct: 303 DEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEESERRQADFENST 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+A+NVDE++ LL +EGF VEELA V I E+ASIEGFDEETA E+Q RA EYL+ Sbjct: 363 RVFMEALNVDEVVGQLLASEGFTSVEELALVDIRELASIEGFDEETATELQARASEYLDR 422 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 ++ ++ + ELGV + L +PGI SKI V LGE +KT+EDLAGC+ DDL+GW+E K G Sbjct: 423 VETEMEARRLELGVEDALKDVPGITSKILVKLGEGDVKTVEDLAGCATDDLVGWTERKEG 482 Query: 480 -NIEKFDGFLSSL-GTPKDQVESMIIHARYKMGWIEKEKVAD 519 KF G L + G +D+ E +I+ AR K GWI +E++A Sbjct: 483 AEPVKFAGILDGVEGVTRDEAEDLIMQARVKAGWITEEELAS 524 >gi|49473872|ref|YP_031914.1| transcription elongation factor NusA [Bartonella quintana str. Toulouse] gi|49239375|emb|CAF25708.1| N utilization substance protein A [Bartonella quintana str. Toulouse] Length = 543 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 328/523 (62%), Positives = 417/523 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SANRLE+LQIADAVA EKSIDR++V+S MAD+IQKAARS YG ++I EIN +TG+I Sbjct: 3 TSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNIHAEINSKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL++V+ VE+YT +I+L A R IG +D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLKIVDIVEDYTTEITLSDALKRQADAKIGDFFADLLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 V +AERD+QY EFK+K+GEIISGTVKRVEYGNVIVDLG + ++RRDE I RE+ GDR Sbjct: 123 VHDAERDQQYEEFKNKIGEIISGTVKRVEYGNVIVDLGRGEAIVRRDELIPRESFHYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++++ DV RE RGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAFVSDVHREPRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+ATF++NAL+PA V+KVVL Sbjct: 243 VSRDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DEDV RIEVIVP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S NRQK+F ER++ Sbjct: 303 DEDVERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESENRQKEFTERSKL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM++++VDE+I ++ +EGF+ +EE+A + + EIASI+GFD ETA EIQ RAREYLE + Sbjct: 363 FMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASIDGFDHETAAEIQSRAREYLERKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K ++LGVS+EL +PGI + + VA+GE+G+KT+ED AG +VDDL GW E K G Sbjct: 423 KELDEKRKKLGVSDELRMLPGITNAMLVAIGEDGVKTIEDFAGYAVDDLAGWKERKEGQT 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 + F G L+ + E+M++ AR + GWI+K + E Sbjct: 483 QNFSGILTPFDITRFDAEAMVLAARVQAGWIDKADLITENPAK 525 >gi|300024995|ref|YP_003757606.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299526816|gb|ADJ25285.1| NusA antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 543 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 330/531 (62%), Positives = 419/531 (78%), Gaps = 6/531 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EK+ID+ +V+ M D+IQKAA+S YG +DIR EI+P+TG+ Sbjct: 6 ISANRLELLQIADAVAREKTIDKKIVIEAMEDAIQKAAKSRYGAENDIRCEIDPKTGEAK 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R+L VVE VEN QI+++ A+ R+P G ++++ LPP++FGRVA Q+AKQVI+QK Sbjct: 66 LTRVLAVVEAVENDATQITVEDAKKRNPEAKAGDMIAETLPPLEFGRVAAQNAKQVIVQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ E+KD+VG+ +GTVKRVEYGNVIVDLG ++G+IRRDE I REN+R GDR Sbjct: 126 VREAERDRQFAEYKDRVGDTTNGTVKRVEYGNVIVDLGRAEGIIRRDEMIPRENVRLGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++++IYDVRREQRGPQ+ L+R P+FM LF EVPEIY+G+V++K+V+RDPGSRAK+AV Sbjct: 186 IRAFIYDVRREQRGPQIFLTRARPEFMSSLFRAEVPEIYDGVVEIKSVARDPGSRAKIAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRG+RVQAVV EL+ EK+DI+ W+PD+A+F++NAL PA VTKVVL Sbjct: 246 ISKDSSIDPVGACVGMRGARVQAVVNELQGEKVDIIQWNPDAASFIVNALAPAEVTKVVL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP+ QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ERTQ Sbjct: 306 DEDSNRIEVVVPEAQLSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQKEFAERTQL 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 M A++VDE+IA LLV EGFA VEE+A V ISEIA IEGFDE TA +IQ RARE++E + Sbjct: 366 LMDALDVDEVIAQLLVTEGFASVEEVAYVDISEIAHIEGFDEGTAEQIQIRAREFIEQQE 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG-- 479 K RELGV++EL IPGI++ + VALGENGIKT+ED A C+ D+L+GW++ K Sbjct: 426 AERDAKRRELGVADELAEIPGINTAMMVALGENGIKTVEDFADCATDELVGWTDRKKDKD 485 Query: 480 -NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV---ADEEVQDAS 526 K GFL + VE+MI+ AR GWI+ E + A+ E + AS Sbjct: 486 TEPVKHKGFLDGFELSRTDVENMIMAARVHAGWIKAEDLQKPAEGEPEAAS 536 >gi|146278788|ref|YP_001168947.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC 17025] gi|145557029|gb|ABP71642.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17025] Length = 534 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 285/516 (55%), Positives = 382/516 (74%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ VEN+ QI++K A+ IG + D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDEAVENHHAQITVKQAKSYKSDPQIGDEIIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRKGSIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE Sbjct: 363 TNLFMETPGIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LG+ + L + G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 EANRKALESARALGLEDSLANFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K +G L ++ + +++ AR +GW++ Sbjct: 483 GQRVKDEGVLEKFDVSLEEAQHLVMTARVMLGWVDP 518 >gi|260576186|ref|ZP_05844179.1| NusA antitermination factor [Rhodobacter sp. SW2] gi|259021666|gb|EEW24969.1| NusA antitermination factor [Rhodobacter sp. SW2] Length = 533 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 285/519 (54%), Positives = 382/519 (73%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGAELDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +EN+ Q++LK A P +G V D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDEALENHHAQLTLKQAVAIKPDAVVGDEVIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRKGSIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+I V+VP EQLSLAIGRRGQNVRLASQLT IDI+TE +DS RQ +F ER Sbjct: 303 VVIDEEAGKIVVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIVTETDDSARRQAEFTER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE++A LLV+EGF ++EE+A V + E+ SI+GFDE TA E+Q RAR+ LE Sbjct: 363 TKLFMDTLDIDEMMAQLLVSEGFTNLEEVAYVDLDELLSIDGFDEATAGELQARARDNLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I + R LGV + L + G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 AANIKAMENARALGVEDSLVNFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K G L ++ + +++ AR +GW++ ++ Sbjct: 483 GARVKDQGVLEEFDVSLEEAQHLVMTARVMLGWVDPAEL 521 >gi|126728006|ref|ZP_01743822.1| transcription elongation factor NusA [Sagittula stellata E-37] gi|126710971|gb|EBA10021.1| transcription elongation factor NusA [Sagittula stellata E-37] Length = 538 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 287/521 (55%), Positives = 383/521 (73%), Gaps = 2/521 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVQQAKQYMADPKVGDTFVEEVPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK Sbjct: 183 GDRIRCYVKDVRRETRGPQIFLSRTAPEFMRELFKMEVPEIYDGIIEVKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+ IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNGIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA+EYLE Sbjct: 363 TQLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEMDELLVIDGVDEGTAAELQTRAQEYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + RELG + L + G+ ++ VAL E+G+KT+ED A C+ +L G + Sbjct: 423 EQARQAEARARELGADDSLLAFEGLTPQMVVALAEDGVKTLEDFATCADWELAGGWTTQD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G K DG L G D+ ++M++ AR +GW++ E++ Sbjct: 483 GQRVKDDGLLEKFGIDLDEAQNMVMTARVMLGWVDPEELVA 523 >gi|312115896|ref|YP_004013492.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311221025|gb|ADP72393.1| NusA antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 581 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 325/511 (63%), Positives = 405/511 (79%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +VLS M D+IQKAA+S YG+ ++IR EI+P TG+I Sbjct: 6 ISANRLELLQIADAVAREKSIDRTLVLSAMEDAIQKAAKSRYGSENEIRAEIDPRTGEIR 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE V +ISLK A R+P ++G +++PLPP+DFGRVA Q+AKQVI+QK Sbjct: 66 LSRLLEVVERVTLDATEISLKDAMKRNPEAEVGDFIAEPLPPLDFGRVAAQNAKQVIVQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER+RQ+ E+KD++ EI+SG VKR EYGNV++DLG ++ +IRRDET+ REN + GDR Sbjct: 126 VREAERERQFEEYKDRMSEIVSGVVKRAEYGNVMIDLGRAEAIIRRDETLPRENYKLGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRRE RGPQ+ LSRT P+FM KLF EVPEIY+GIV++K+V+RDPGSRAK+AV Sbjct: 186 VRAYVYDVRRENRGPQIFLSRTRPEFMAKLFAQEVPEIYDGIVEIKSVARDPGSRAKIAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S ++S+DPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V KVVL Sbjct: 246 VSKETSVDPVGACVGMRGSRVQAVVNELQGEKIDIIQWSGDPATFIVNALAPAEVAKVVL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGR+GQNVRLASQLTGW IDI+TE E+S RQK+F ERT Sbjct: 306 DEESERIEVVVPDEQLSLAIGRKGQNVRLASQLTGWDIDILTEAEESERRQKEFAERTAA 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VDE+IA LLV+EGFA VEELA V E+A IEGFDE TA+EIQ RARE+LE + Sbjct: 366 FVNALDVDEMIAQLLVSEGFASVEELAFVDSHEVAIIEGFDENTALEIQERAREFLERQE 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K R LGV++EL +PG+ + + VA GEN IKT+EDLA C+ D+L GW+E G Sbjct: 426 AELNEKRRALGVADELAEVPGVTTAMLVAFGENNIKTVEDLADCATDELAGWTERAHGQT 485 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ G L K +E +II AR K GWI Sbjct: 486 KQNPGILQGFDLSKSDIEHLIIAARVKAGWI 516 >gi|159046101|ref|YP_001534895.1| transcription elongation factor NusA [Dinoroseobacter shibae DFL 12] gi|157913861|gb|ABV95294.1| transcription elongation protein nusA [Dinoroseobacter shibae DFL 12] Length = 544 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 286/526 (54%), Positives = 384/526 (73%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRGEGVLRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++A++VDE++A LLV+EGF ++EE+A V+ E+ I+GFDE+TA E+Q RARE+LE Sbjct: 363 TNMFVEALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ RE+GV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 EQAKKALERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K +G L ++ + +++ AR ++GW+ E + EE D Sbjct: 483 GERVKDEGVLEKFDVSLEEAQLLVMTARVQLGWVNPEDLEIEEDAD 528 >gi|310817128|ref|YP_003965092.1| transcription elongation factor NusA [Ketogulonicigenium vulgare Y25] gi|308755863|gb|ADO43792.1| transcription elongation factor NusA [Ketogulonicigenium vulgare Y25] Length = 533 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 279/515 (54%), Positives = 375/515 (72%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKLIDPSLVVEAMEESLARAAKSRYGADMDIRVHIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VVE+ VENY ++++ A+ + ++G + + +PP+D GR+A QSAKQVI Sbjct: 63 HFSRVRTVVEDDAVENYHAEMTVDQAKLYMSNPEVGDIFEEEIPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QK+REAERDRQY EFK + G II+GTVKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKIREAERDRQYEEFKHRQGTIINGTVKREEYGNLIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCYVKDVRREVRGPQIFLSRTAPEFMRELFKMEVPEIYEGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVLSNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDMPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE E+S RQ +F R Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTNLDIDIMTESEESKRRQAEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLVAEGF ++EE+A V + E+ +IEG DE TA E+Q RAR+++E Sbjct: 363 TKLFMETLDLDEFFAQLLVAEGFTNLEEVAYVDLDELTTIEGVDEATAGEVQARARDHIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LG + L S PG+ ++ AL ++G+KT+ED A C+ +L G Sbjct: 423 SQNEKALEAARALGAEDSLISFPGLTPQMVEALAKDGVKTLEDFATCADWELAGGWTTVE 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L ++ ++MI+ AR +GW++ Sbjct: 483 GKRVKDDGVLEPFDLSLEEAQTMIMTARVSLGWVD 517 >gi|126724629|ref|ZP_01740472.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2150] gi|126705793|gb|EBA04883.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2150] Length = 534 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 282/517 (54%), Positives = 380/517 (73%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + R+ VVEEVENY + +++ A+ ++G V+D +PP++ GR+A QSAKQVI+Q Sbjct: 63 TFTRVRTVVEEVENYQAEFTVEEAKPYKADAEVGDEVTDEVPPVEMGRIAAQSAKQVILQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+REAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +GV+RR+E I RE+ RP D Sbjct: 123 KIREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGVLRRNEKIGRESYRPND 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+ +KAV+RDPGSRAK+A Sbjct: 183 RIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIDIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVV Sbjct: 243 VISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +FNERT Sbjct: 303 LDEEAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESKRRQAEFNERTG 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A+++DE A LLVAEGF +EE+A V++ E+ I+G DE TA E+Q RAR+Y+E + Sbjct: 363 LFMEALDLDEFFAQLLVAEGFRTLEEVAYVEVDELLVIDGVDEGTAGELQARARDYIEAL 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ ELGV + L G+ ++ AL E+G+ ++ED A C+ +L G G Sbjct: 423 NKKALERAVELGVVQSLIDFEGLTPQMIEALAEDGVLSLEDFATCADWELAGGWTTVDGE 482 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 K DG L ++ ++M++ AR ++GW++ + Sbjct: 483 RVKDDGVLEKFDVALEEAQNMVMTARIQLGWVDPADL 519 >gi|294675770|ref|YP_003576385.1| transcription elongation factor NusA [Rhodobacter capsulatus SB 1003] gi|294474590|gb|ADE83978.1| transcription elongation factor NusA [Rhodobacter capsulatus SB 1003] Length = 536 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 285/519 (54%), Positives = 385/519 (74%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEDSLARAAKSRYGSEMDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 S R+ VVE+ VENY Q+++ A+ + +G + D +PP+D GR+A QSAKQVI Sbjct: 63 SFTRVRTVVEDEAVENYQAQLTVAQAKQYKTNPQLGDEIVDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFDEFKDRKGTIINGVVKREEYGNIIVDIGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+ DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYVKDVRRETRGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ATF++NAL+PA V K Sbjct: 243 IAVISNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNADAATFLVNALQPAEVAK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDILTEAEESSRRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ A+++DE A LLVAEGF ++EE+A V + E+ SIEG D+ TA E+Q RAR+Y+E Sbjct: 363 TKLFVDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLSIEGVDDGTAEELQARARDYIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +ELGV + L + G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNAKAIAAAKELGVEDSLFNFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K +G L G + + +I+ AR ++GW++ ++ Sbjct: 483 GARVKDEGILEKFGMSLEDAQKLIMTARIQLGWVDISEL 521 >gi|84684618|ref|ZP_01012519.1| transcription elongation factor NusA [Maritimibacter alkaliphilus HTCC2654] gi|84667597|gb|EAQ14066.1| transcription elongation factor NusA [Rhodobacterales bacterium HTCC2654] Length = 539 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 276/519 (53%), Positives = 377/519 (72%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ + +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDNPVVGDTIVDEVPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYVKDVRRETRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V K Sbjct: 243 IGVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVAK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR++L+ Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTANELQARARDFLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + + LGV + L G+ ++ AL ++G+ T+ED A C+ +L G Sbjct: 423 EQNRKALENAKALGVQDSLIGFEGLTPQMIEALAKDGVFTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L ++ ++MI+ AR ++GW++ + Sbjct: 483 GERSKDDGVLEPFDVGLEEAQNMIMTARIQLGWVDPADL 521 >gi|56694991|ref|YP_165337.1| transcription elongation factor NusA [Ruegeria pomeroyi DSS-3] gi|56676728|gb|AAV93394.1| transcription termination factor NusA [Ruegeria pomeroyi DSS-3] Length = 541 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 280/516 (54%), Positives = 370/516 (71%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV EE+ENY + ++ A+ + IG + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADEELENYQAEFTVDQAKQYMENPQIGDTFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE E+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEESARRQKEFESR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TNLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQAKAALDNARALGAEDSLIQFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L G + + M++ AR +GW++ Sbjct: 483 GQRVKDDGILEPFGVSLEDAQDMVMTARVMLGWVDP 518 >gi|77464744|ref|YP_354248.1| transcription elongation factor NusA [Rhodobacter sphaeroides 2.4.1] gi|126463584|ref|YP_001044698.1| transcription elongation factor NusA [Rhodobacter sphaeroides ATCC 17029] gi|221640658|ref|YP_002526920.1| transcription elongation factor NusA [Rhodobacter sphaeroides KD131] gi|332559637|ref|ZP_08413959.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N] gi|77389162|gb|ABA80347.1| N-utilization substance protein A [Rhodobacter sphaeroides 2.4.1] gi|126105248|gb|ABN77926.1| NusA antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221161439|gb|ACM02419.1| NusA antitermination factor [Rhodobacter sphaeroides KD131] gi|332277349|gb|EGJ22664.1| transcription elongation factor NusA [Rhodobacter sphaeroides WS8N] Length = 535 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 284/516 (55%), Positives = 383/516 (74%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIQAMEESLARAAKSRYGSDLDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +EN+ Q+++K AR IG + D +PP+D GR+A QSAKQVI Sbjct: 63 TFARIRTVVEDELIENHHAQVTVKQARSYLADPKIGDEIIDEVPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRKGTIINGVVKREEYGNIIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++YI DVRRE RGPQV LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRAYIKDVRREARGPQVFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNQDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TE ++S RQ +F ER Sbjct: 303 VVIDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTALDIDIMTEADESARRQAEFAER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE++A LLV+EGF ++EE+A V E+ SI+GFDE+TA E+Q RAR++LE Sbjct: 363 TNLFMETLDIDEMMAQLLVSEGFTNLEEVAYVDPEELLSIDGFDEDTAAELQARARDHLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LG+ + L G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 EANRKALESARALGLEDSLAGFEGLTPQMLEALAKDGIKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K +G L ++ + +++ AR +GW++ Sbjct: 483 GQRVKDEGVLEKFDVSLEEAQHLVMTARVMLGWVDP 518 >gi|260429111|ref|ZP_05783088.1| NusA antitermination factor [Citreicella sp. SE45] gi|260419734|gb|EEX12987.1| NusA antitermination factor [Citreicella sp. SE45] Length = 543 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 288/516 (55%), Positives = 379/516 (73%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVKIDRRTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY ++++K A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVKQAKQYMADPKVGDQFIEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYDEFKDRAGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTSPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDVPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F +R Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEQR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G DE+TA E+Q RARE+LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDEDTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + RELG + L G+ ++ AL E+G+KT+ED A C+ +L G +G Sbjct: 423 EQARKALEHARELGAEDSLIEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTEG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L + +++I+ AR +GW++ Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVDP 518 >gi|114762088|ref|ZP_01441556.1| transcription elongation factor NusA [Pelagibaca bermudensis HTCC2601] gi|114545112|gb|EAU48115.1| transcription elongation factor NusA [Roseovarius sp. HTCC2601] Length = 542 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 287/516 (55%), Positives = 376/516 (72%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV+I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVIEAMEESLARAAKSRYGSEMDIRVKIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY ++++K A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVKQAKQYMADPQVGDQYVEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+GTVKR EYGNVIVD+G +G++RR+E I RE RP Sbjct: 123 LQKVREAERDRQYDEFKDRNGTIINGTVKREEYGNVIVDIGRGEGILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IGVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLVAEGF ++EE+A V++ E+ I+G D++TA E+Q RARE+LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVELDELLVIDGVDDDTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 RELG + L G+ ++ AL E+G+KT+ED A C+ +L G Sbjct: 423 EQARKALAHARELGAEDSLIEFDGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L + +++I+ AR +GW++ Sbjct: 483 GERVKDDGLLEKFDVDLAEAQNLIMTARVLLGWVDP 518 >gi|209966175|ref|YP_002299090.1| transcription elongation factor NusA [Rhodospirillum centenum SW] gi|209959641|gb|ACJ00278.1| transcription elongation factor NusA [Rhodospirillum centenum SW] Length = 511 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 291/506 (57%), Positives = 381/506 (75%), Gaps = 16/506 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +ELLQ+ADAVA EK+ID++ VL M ++I+KA RS YG DIR I+ +TG+I L R L Sbjct: 1 MELLQVADAVAREKNIDKEHVLEAMEEAIKKAGRSKYGHEHDIRARIDRKTGEIQLTRYL 60 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VEN QI L A+ ++P+ +G + DPLPP+DFGR+A Q+AKQVI+QKVREAE Sbjct: 61 EVVETVENEALQIDLAKAKRKNPAAKVGDFIVDPLPPIDFGRIAAQTAKQVIVQKVREAE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+RQ+ E+KD++GEI++G VKRVEYGNV VDLG ++GV+RRDE++ RE+ + GDRV++YI Sbjct: 121 RERQFNEYKDRMGEIVNGLVKRVEYGNVTVDLGRAEGVLRRDESLPREHFKTGDRVRAYI 180 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 YDVRREQRGPQ+ LSRTHP FM LF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS Sbjct: 181 YDVRREQRGPQIFLSRTHPMFMAGLFKQEVPEIYDGIIEIKAVARDPGSRAKIAVISKDS 240 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVLDE+ G Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNRDPATFVVNALAPAEVAKVVLDEENG 300 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +IEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S RQ++F R+Q FM+A+ Sbjct: 301 KIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDIMTEKEESDRRQEEFRTRSQLFMEAL 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +VD++IAHLLVAEGF VEE+A V + E+ +I+ FDE+ A E+Q RA+ +LE + L++ Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVDLDELTAIDAFDEDVAAELQNRAQAFLEEQNARLEE 420 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 K R LGV +++ ++ + + V LGENG+KT++DLA + D+L Sbjct: 421 KRRALGVDDDVAAVEALTPAMLVKLGENGVKTLDDLADLAGDELSEIVGKDA-------- 472 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWI 512 D ++I+ AR W Sbjct: 473 ------LSVDDANAVIMAARAH--WF 490 >gi|114571580|ref|YP_758260.1| transcription elongation factor NusA [Maricaulis maris MCS10] gi|114342042|gb|ABI67322.1| NusA antitermination factor [Maricaulis maris MCS10] Length = 572 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 312/518 (60%), Positives = 391/518 (75%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIA AVA EKSID +V+ + ++IQKAARS YG +DIR +I+P+TG++S Sbjct: 5 VSANRLELLQIARAVAAEKSIDESIVIEAIEEAIQKAARSRYGAENDIRAKIDPKTGELS 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R + VVEEVEN + +++L A+ D + +IG V SD LPP++FGRVA Q+AKQVI QK Sbjct: 65 LTRNMTVVEEVENDSQELTLADAKKIDKTAEIGTVFSDELPPIEFGRVASQTAKQVITQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER RQ+ E+KD+VGEIISG VKRVEYGNVI+DLG ++ +IRR + I RENL+ +R Sbjct: 125 VREAERQRQFEEYKDRVGEIISGIVKRVEYGNVIIDLGRAEAIIRRADGIPRENLQNNER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y GI+++ +V+RDPGSRAK+AV Sbjct: 185 VRAYIYDVREEVRGPQIFLSRAHPDFMAALFAQEVPEVYEGIIEIPSVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D SIDPVGACVGMRGSRVQAVV+EL EKIDI+ WS D ATF++NAL+PA V KVVL Sbjct: 245 ISNDGSIDPVGACVGMRGSRVQAVVSELAGEKIDIIPWSDDPATFIVNALQPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLASQLTGW+IDI+TEEE+S RQK+F ERTQ Sbjct: 305 DEEDQRIEVVVPDEQLSLAIGRRGQNVRLASQLTGWSIDILTEEEESERRQKEFAERTQI 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VDE+IA LL EGF DVE+LA + EI +IEGFDE+TA EIQ RAR+YL+ + Sbjct: 365 FIAALDVDEVIAQLLATEGFTDVEDLAYADLGEIGAIEGFDEDTAEEIQARARDYLDRLS 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 K +ELGV + + + G+ + V GEN +KT++DLAG DDL GW E K G Sbjct: 425 AEQDAKRKELGVEDAVLEVEGVVLAMAVKFGENDVKTVDDLAGLVTDDLRGWFETKNGER 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 + G L + E MI+ AR GWI +E + Sbjct: 485 VREPGILEEFNLAAEDAEMMIMRARVAAGWISEEDLPQ 522 >gi|83945005|ref|ZP_00957371.1| transcription elongation factor NusA [Oceanicaulis alexandrii HTCC2633] gi|83851787|gb|EAP89642.1| transcription elongation factor NusA [Oceanicaulis alexandrii HTCC2633] Length = 578 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 304/519 (58%), Positives = 386/519 (74%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LE+LQIA AVA EK ID +VL + ++IQKAARS YG DI +INP+TG++ Sbjct: 5 VSANKLEILQIARAVAQEKMIDESIVLEAIEEAIQKAARSRYGAELDIHCKINPKTGEMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L VVEEVEN QI+L A+ RDP +IG + LPP++FGRVA Q+AKQVI QK Sbjct: 65 LTSRTTVVEEVENEAHQITLDEAKKRDPEAEIGSFYEEELPPIEFGRVASQTAKQVITQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER RQ+ E+KD++GEI++G VKRVEYGNVI+DLG ++G+IRR + I RE+L+ DR Sbjct: 125 VREAERKRQFNEYKDRIGEIVNGIVKRVEYGNVIIDLGKAEGIIRRSDGIPRESLQVNDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSR HP FM LF EVPE+Y G++++ V+RDPGSRAK+AV Sbjct: 185 VRAYIYDVREETRGPQIFLSRAHPDFMAALFAQEVPEVYEGVIEIPRVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DSSIDPVGACVGMRGSRVQAVV EL EKIDI+ W+PD ATF++NAL+PA V KVVL Sbjct: 245 ISNDSSIDPVGACVGMRGSRVQAVVNELAGEKIDIIPWNPDPATFIVNALQPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 D++ RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQK+F+ERT Sbjct: 305 DDEAERIEVVVPDDQLSLAIGRRGQNVRLASQLTGWAIDILTEEEESERRQKEFSERTST 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE+IA LL EGFA+VE++A V++ EIA IEGFD++TA EIQ RARE+LE Sbjct: 365 FMNALDVDEVIAQLLATEGFAEVEDIAFVELDEIAVIEGFDDDTAQEIQTRAREFLEKRA 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +ELGV + + + G+D + V GEN + T+EDLAG + DDL GW E + G Sbjct: 425 AEQDARRKELGVEDAVLDVEGVDLPMAVKFGENEVCTIEDLAGLTPDDLRGWYETRDGER 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 + G L + E +I+ AR GWI +E + Sbjct: 485 VREPGILEGSDMSPEDAEMLIMRARVIAGWISEEDLPQA 523 >gi|110677786|ref|YP_680793.1| transcription elongation factor NusA [Roseobacter denitrificans OCh 114] gi|109453902|gb|ABG30107.1| transcription termination factor NusA, putative [Roseobacter denitrificans OCh 114] Length = 538 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 276/520 (53%), Positives = 376/520 (72%), Gaps = 2/520 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDEDTANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G K DG L ++ + +I+ AR +GW++ + Sbjct: 483 GERSKDDGVLEPFDVTLEEAQDLIMTARVMLGWVDPADLE 522 >gi|83950734|ref|ZP_00959467.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM] gi|83838633|gb|EAP77929.1| transcription elongation factor NusA [Roseovarius nubinhibens ISM] Length = 544 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 282/516 (54%), Positives = 376/516 (72%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVEE +ENY +++++ A+ +G + +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEEEELENYQAELTVEQAKQYLDDPKVGDQYIEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGMVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 +R++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NERIRCYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQ++F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQREFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEDTAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ RELGV + L G+ ++ AL E+G+KT+ED A C+ +L G + Sbjct: 423 ARAKAALERARELGVEDSLVEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTMQD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L ++ ++M++ AR +GW++ Sbjct: 483 GQRVKDDGILEPFDVSLEEAQAMVMTARVMLGWVDP 518 >gi|149202949|ref|ZP_01879920.1| transcription elongation factor NusA [Roseovarius sp. TM1035] gi|149143495|gb|EDM31531.1| transcription elongation factor NusA [Roseovarius sp. TM1035] Length = 540 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 283/519 (54%), Positives = 380/519 (73%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVNIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VVE+ VENY ++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 KFTRVRTVVEDEAVENYQAEMTVAQAKQYLDDPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD++G II+G VKR EYGNVIVD+G + ++RR+E I RE RP Sbjct: 123 LQKVREAERDRQFEEFKDRLGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ A+++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFVDALDLDEFFAQLLVSEGFTNLEEVAYVDVDELLVIDGVDEDTAAELQARARDMIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L G Sbjct: 423 AQAKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K +G L ++ ++M++ AR +GW++ ++ Sbjct: 483 GERVKDEGILEKFDVSLEEAQNMVMTARVMLGWVDPTEL 521 >gi|119385319|ref|YP_916375.1| transcription elongation factor NusA [Paracoccus denitrificans PD1222] gi|119375086|gb|ABL70679.1| NusA antitermination factor [Paracoccus denitrificans PD1222] Length = 559 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 292/548 (53%), Positives = 382/548 (69%), Gaps = 23/548 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID D+V+ M DS+ +AA+S YG+ DIRV I+ +TG+ Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPDLVIEAMEDSLARAAKSRYGSEMDIRVHIDRKTGNA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVAR---------------------DRDPSIDIGGVV 97 + R VVE+ VENY Q + A D G V Sbjct: 63 TFTRARTVVEDEAVENYQAQFTADQAAPYFEPSKDGRAHWLRDGAQLADFSGRPQPGDVF 122 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + +PP+D GR+A QSAKQVI+Q+VREAERDRQY EFKD+VG II+G VKR EYGN+IVD Sbjct: 123 EEQVPPVDLGRIAAQSAKQVILQRVREAERDRQYEEFKDRVGSIINGVVKREEYGNIIVD 182 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 +G + ++RR+E I RE+ RP DR+++Y+ DVRRE RGPQ+ LSRT PQFM +LF MEVP Sbjct: 183 VGRGEAILRRNEKIGRESYRPNDRIRAYVKDVRREARGPQIFLSRTDPQFMAELFKMEVP 242 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+G++++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ Sbjct: 243 EIYDGVIEIKAVARDPGSRAKIAVISYDNSIDPVGACVGMRGSRVQAVVGELQGEKIDII 302 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WS D ATF++NAL+PA V KVV DED RIEV+VP EQLSLAIGRRGQNVRLASQLTG Sbjct: 303 PWSDDQATFLVNALQPAEVAKVVFDEDATRIEVVVPDEQLSLAIGRRGQNVRLASQLTGL 362 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI+TEEE+S RQ +FN RT+ FM A+++DE A LLVAEGF ++EE+A V + E+ S Sbjct: 363 DIDILTEEEESKRRQAEFNARTKLFMDALDLDEFFAQLLVAEGFTNLEEVAYVDLDELLS 422 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 IEG DE TA E+Q RARE+LE + + R LGV + L G+ ++ AL ++G+K Sbjct: 423 IEGVDEGTAEELQTRAREHLEAANKAALENARALGVEDSLIEFEGLTPQMVEALAKDGVK 482 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 T+ED A C+ +L G + G K DG L ++ ++M++ AR +GW++ ++ Sbjct: 483 TLEDFATCADWELAGGWTTQNGQRVKDDGILEPFDVSLEEAQTMVMTARVMLGWVDPTEL 542 Query: 518 ADEEVQDA 525 + +A Sbjct: 543 ESADEAEA 550 >gi|99082750|ref|YP_614904.1| transcription elongation factor NusA [Ruegeria sp. TM1040] gi|99039030|gb|ABF65642.1| NusA antitermination factor [Ruegeria sp. TM1040] Length = 538 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 275/525 (52%), Positives = 377/525 (71%), Gaps = 2/525 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY ++++ A+ +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMEDPKVGDTIVDEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R +GV + L G+ ++ AL ++ +K++ED A C+ +L G Sbjct: 423 AKAKAALDNARSMGVEDSLIDFDGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G K +G L ++ +++++ AR +GW++ ++ + Sbjct: 483 GERVKDEGILEPFDVSLEEAQNLVMTARIMLGWVDPAELESDADD 527 >gi|307942744|ref|ZP_07658089.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4] gi|307773540|gb|EFO32756.1| transcription elongation protein NusA [Roseibium sp. TrichSKD4] Length = 559 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 332/522 (63%), Positives = 425/522 (81%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EKSIDR +V+S M D+IQKAARS YGT +++R EINP+TGDI Sbjct: 3 ISANRLELLQIADAVAREKSIDRTIVISAMEDAIQKAARSRYGTETEVRAEINPKTGDIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL+VVE VEN + +I+++ AR R+P +G ++DPLPP+DFGR+A QSAKQVI+QK Sbjct: 63 LQRLLQVVEVVENVSTEIAVEDARQRNPEAALGDFIADPLPPLDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGE+I+G VKR EYGNVIVDLG ++ ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEVINGVVKRAEYGNVIVDLGRAEAIVRRDELIPREIFRTGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI+DVRREQRGPQ+ LSRTHPQFM KLF EVPEIY+G+++++ V+RDPGSRAK+AV Sbjct: 183 IRAYIHDVRREQRGPQIFLSRTHPQFMAKLFTSEVPEIYDGVIEIRTVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V KVVL Sbjct: 243 ISKDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNEDPATFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+Q Sbjct: 303 DEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWAIDIMTEQEESDRRQKEFVERSQL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A+NVDE++ LL EGF VEE+A V++ EI+ IEGFD+ETA EIQ RAR+YLE ++ Sbjct: 363 FMDALNVDEMVGQLLATEGFTSVEEVAYVELDEISMIEGFDDETAEEIQARARDYLEELE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + +ELGVS++L SI G+ + VALG++ +K+MEDLAGC+ DDL+GW+E K G Sbjct: 423 AKLDAERQELGVSDDLRSIDGLTLAMMVALGKDDVKSMEDLAGCAADDLVGWTERKDGET 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 ++++G LS+ + + E+M++ AR GWI +E++A + + Sbjct: 483 KRYEGALSAFDLSRAEAEAMVMAARVAAGWITEEELAAQNAE 524 >gi|89067479|ref|ZP_01154992.1| transcription elongation factor NusA [Oceanicola granulosus HTCC2516] gi|89047048|gb|EAR53102.1| transcription elongation factor NusA [Oceanicola granulosus HTCC2516] Length = 542 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 283/526 (53%), Positives = 377/526 (71%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRRTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAELTVEQAKQYLDDPKVGDQYIEEIPPVELGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRCYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IGVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F ER Sbjct: 303 VVLDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V+ E+ I+G DE TA E+Q RAR+ L+ Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEQDELLVIDGVDEGTAQELQARARDVLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +K RELGV + L + G+ + +AL E+G+KT+ED A C+ +L G Sbjct: 423 EQNRVALEKARELGVEDSLVNFEGLTPAMVLALAEDGVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K DG L ++ + M++ AR +GW++ + + E + Sbjct: 483 GERVKDDGVLEKFDVSLEEAQDMVMTARVLLGWVDPDDLMPEAAAE 528 >gi|163733005|ref|ZP_02140449.1| transcription elongation factor NusA [Roseobacter litoralis Och 149] gi|161393540|gb|EDQ17865.1| transcription elongation factor NusA [Roseobacter litoralis Och 149] Length = 538 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 275/522 (52%), Positives = 377/522 (72%), Gaps = 2/522 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDELLENYQAEFTVEQAKQYMENPEVGQQLIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRAGSIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ F+ +++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ LE Sbjct: 363 TQLFVDNLDLDEFFAQLLVSEGFTSLEEVAYVEVDELLVIDGVDADTANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAAIESARALGVEDSLIEFEGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G K DG L ++ + +I+ AR +GW++ + + Sbjct: 483 GERSKDDGVLEPFEMTLEEAQDLIMTARVMLGWVDPADLEPD 524 >gi|163737947|ref|ZP_02145363.1| transcription elongation factor NusA [Phaeobacter gallaeciensis BS107] gi|163742658|ref|ZP_02150044.1| transcription elongation factor NusA [Phaeobacter gallaeciensis 2.10] gi|161384243|gb|EDQ08626.1| transcription elongation factor NusA [Phaeobacter gallaeciensis 2.10] gi|161388563|gb|EDQ12916.1| transcription elongation factor NusA [Phaeobacter gallaeciensis BS107] Length = 541 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 279/527 (52%), Positives = 379/527 (71%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDDALENYQAELTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +YLE Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LGV + L G+ ++ AL ++GIKT+ED A C+ +L G Sbjct: 423 AQAKAAIDAARALGVEDSLIDFDGLTPQMVEALAKDGIKTLEDFATCADWELAGGWTTNK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L + +++++ AR +GW++ ++ + DA Sbjct: 483 GERVKDDGILEPFDVSLEDAQTLVMTARVLLGWVDPTELEADAEDDA 529 >gi|83953120|ref|ZP_00961842.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1] gi|83842088|gb|EAP81256.1| transcription elongation factor NusA [Sulfitobacter sp. NAS-14.1] Length = 546 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 277/527 (52%), Positives = 381/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K +G L + + +I+ AR +GW++ ++ ++V + Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVDPAELEADDVDEE 529 >gi|304392764|ref|ZP_07374704.1| transcription elongation protein NusA [Ahrensia sp. R2A130] gi|303295394|gb|EFL89754.1| transcription elongation protein NusA [Ahrensia sp. R2A130] Length = 553 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 317/518 (61%), Positives = 413/518 (79%), Gaps = 2/518 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+ANRLEL+QIADAVA EKSIDR +VL MAD+I+KAA++ YG ++IR +IN +TG+I Sbjct: 3 VAANRLELMQIADAVAREKSIDRKIVLDAMADAIEKAAKARYGLETNIRADINEKTGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLL VVE+VE+ +I L A+ ++ + ++G + + LPPMDFGRVA QSAKQVI+QK Sbjct: 63 LQRLLLVVEKVEDPDTEILLADAKHKNEAAELGVHIGELLPPMDFGRVAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQ+ EF+++ GEII+GTVKRVEYGNVIVDLG ++ +IRRDE I RE R GDR Sbjct: 123 VRDAERDRQFAEFENRTGEIINGTVKRVEYGNVIVDLGRAEAIIRRDELIPREMYRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+G+++++AV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRREQRGPQIFLSRTHPQFMAKLFQMEVPEIYDGVIEIRAVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+DS IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS ++A F++NAL+PA V KVVL Sbjct: 243 ISNDSGIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSEEAAGFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TEEE+S RQ +F+ T Sbjct: 303 DEDKARIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDILTEEEESGRRQAEFSANTST 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+NVDE++ LL +EGF+D+EE+A V+ E+A IEGFD++TA E+Q RA+E+LE + Sbjct: 363 FTEALNVDEMVGQLLASEGFSDLEEVAYVEQDELAMIEGFDDDTAAELQARAKEFLEKKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENG--IKTMEDLAGCSVDDLLGWSENKGG 479 L K +ELGV+++L +PGI + + VALGE+ IK++ED AG DDL+G++E K G Sbjct: 423 QGLDAKRKELGVADDLRQVPGITTAMMVALGESDEEIKSLEDFAGSVADDLIGYNERKDG 482 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + + G LS+ G + Q + MI+ AR + GW+ +E + Sbjct: 483 ELIRHTGPLSTFGLSRVQADEMIMAARIEAGWVTEEDL 520 >gi|260431715|ref|ZP_05785686.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis ITI-1157] gi|260415543|gb|EEX08802.1| transcription elongation factor NusA [Silicibacter lacuscaerulensis ITI-1157] Length = 560 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 279/542 (51%), Positives = 378/542 (69%), Gaps = 23/542 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDP---------------------SIDIGGVV 97 + R+ VV EE+ENY ++++ AR +G V+ Sbjct: 63 TFTRVRTVVDDEELENYQAEMTVDQARAYFEPSKDGRAVWLRDGQPIEDFSTGPQVGDVL 122 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 + +PP++ GR+A QSAKQVI+QKVREAERDRQY +FKD+VG II+G VKR E+GNVIVD Sbjct: 123 QEEVPPVEMGRIAAQSAKQVILQKVREAERDRQYEDFKDRVGTIINGAVKREEFGNVIVD 182 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 LG ++ V+RR++ I RE+ RP DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVP Sbjct: 183 LGGAEAVLRRNDKIGRESYRPNDRVRAYIKEVRREPRGHQIFLSRTAPEFMAELFKMEVP 242 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+GI+++KAV+RDPGSRAK+AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ Sbjct: 243 EIYDGIIEIKAVARDPGSRAKIAVISHDNSIDPVGACVGMRGSRVQAVVNELQGEKIDII 302 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 W+ D TF++NAL+PA V+KVVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG Sbjct: 303 PWNEDQPTFLVNALQPAEVSKVVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGL 362 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 IDI+TE E+S RQK+F RT+ FM ++++DE A LLVAEGF ++EE+A V++ E+ Sbjct: 363 DIDIMTEAEESARRQKEFEARTKLFMDSLDLDEFFAQLLVAEGFTNLEEVAYVELDELLV 422 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 I+G DE TA E+Q RAR+ +E R LG + L G+ ++ AL ++G+K Sbjct: 423 IDGVDEGTAQELQARARDVIEAQAKAALDNARALGAEDSLIEFEGLTPQMVEALAKDGVK 482 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 T+ED A C+ +L G G K DG L G ++ + +++ AR +GW++ ++ Sbjct: 483 TLEDFATCADWELAGGWTTVDGQRVKDDGILEPFGVTLEEAQDLVMTARVMLGWVDPAEL 542 Query: 518 AD 519 Sbjct: 543 EQ 544 >gi|254475265|ref|ZP_05088651.1| NusA antitermination factor [Ruegeria sp. R11] gi|214029508|gb|EEB70343.1| NusA antitermination factor [Ruegeria sp. R11] Length = 541 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 281/527 (53%), Positives = 380/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ +G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDDALENYQAEMTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+G++++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RA +YLE Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LGV + L G+ ++ AL ++GIKT+ED A C+ +L G + Sbjct: 423 AQAKAAIDAARALGVEDSLIDFDGLTPQMIEALAKDGIKTLEDFATCADWELAGGWTSNK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L + +++++ AR +GW++ ++ E DA Sbjct: 483 GERVKDDGILEPFDVSLEDAQNLVMTARVLLGWVDPAELEAEAEDDA 529 >gi|84514878|ref|ZP_01002241.1| transcription elongation factor NusA [Loktanella vestfoldensis SKA53] gi|84511037|gb|EAQ07491.1| transcription elongation factor NusA [Loktanella vestfoldensis SKA53] Length = 533 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 281/518 (54%), Positives = 371/518 (71%), Gaps = 2/518 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG + Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVNIDRKTGRAT 63 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 R+ VV + VENY + ++ A+D IG S+ +PP++ GR+A QSAKQVI+ Sbjct: 64 FTRVRTVVADDAVENYQAEFTVAQAKDYMTDPQIGQEYSEEVPPVELGRIAAQSAKQVIL 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G+ + V+RR+E I RE RP Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGSGEAVLRRNEKIGREAYRPN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ YI +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY G++++KAV+RDPGSRAK+ Sbjct: 184 DRIRCYIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGVIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTKV Sbjct: 244 AVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVTKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ G+IEV+VP EQLSLAIGRRGQNVRLAS LTG IDI+TEEE+S RQ +F RT Sbjct: 304 VLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASMLTGLDIDILTEEEESKRRQAEFETRT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +++DE A LLVAEGF ++EE+A V+ E+ IEG DE TA E+Q RAR+YLE Sbjct: 364 KLFMDTLDLDEFFAQLLVAEGFTNLEEVAYVEQDELLVIEGVDEGTAGELQARARDYLEA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 GV + L G+ ++ ALG++G+KT+ED A C+ +L G G Sbjct: 424 QAKKAMDAAIATGVEQSLIDFEGLTPQMLEALGKDGVKTLEDFATCADWELAGGWTTVNG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 K DG L ++ ++M++ AR +GW++ +++ Sbjct: 484 ERVKDDGVLEPFDVSLEEAQTMVMTARVMLGWVDPDEL 521 >gi|84500726|ref|ZP_00998975.1| transcription elongation factor NusA [Oceanicola batsensis HTCC2597] gi|84391679|gb|EAQ04011.1| transcription elongation factor NusA [Oceanicola batsensis HTCC2597] Length = 536 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 285/516 (55%), Positives = 376/516 (72%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ AR +G ++ +PP+D GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQARQYMADPQVGDTFTEEVPPVDMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGN+IVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNIIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DEETA E+Q RAR+ LE Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVEIDELLVIDGVDEETANELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ RELG + L G+ ++ AL E+G+KT+ED A C+ +L G Sbjct: 423 AQAKAAMERARELGAEDSLIEFEGLTPQMIQALAEDGVKTLEDFATCADWELAGGWTTVE 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L ++ + M+++AR +GW++ Sbjct: 483 GERVKDDGLLEPFDVSLEEAQHMVMNARVMLGWVDP 518 >gi|254466388|ref|ZP_05079799.1| transcription termination factor NusA [Rhodobacterales bacterium Y4I] gi|206687296|gb|EDZ47778.1| transcription termination factor NusA [Rhodobacterales bacterium Y4I] Length = 538 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 284/516 (55%), Positives = 378/516 (73%), Gaps = 2/516 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY +++++ AR + ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMANPEVGQTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA VTK Sbjct: 243 IAVVSYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TKLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 RELG E L G+ ++ AL ++ +K++ED A C+ +L G + G Sbjct: 423 AQAKAALDAARELGAEESLIQFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTSNG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K DG L G ++ + M++ AR +GW++ Sbjct: 483 GERVKDDGILEPFGVSLEEAQDMVMTARIMLGWVDP 518 >gi|163745072|ref|ZP_02152432.1| transcription elongation factor NusA [Oceanibulbus indolifex HEL-45] gi|161381890|gb|EDQ06299.1| transcription elongation factor NusA [Oceanibulbus indolifex HEL-45] Length = 542 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 279/526 (53%), Positives = 378/526 (71%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV+IN +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVDINRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E++ENY + ++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADEDLENYQAEFTVDQAKQYMAEPKVGDTYVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF+++EE+A V++ E+ I+G DE+TA E+Q RAR+ LE Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFSNLEEVAYVEVDELLVIDGVDEDTAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDNARALGVEDSLVEFEGLTPQMLEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K DG L + ++MI+ AR +GW++ ++ + +D Sbjct: 483 GERVKDDGALEPFEVSLEDAQAMIMTARVMLGWVDPTELEGDADED 528 >gi|259417192|ref|ZP_05741111.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B] gi|259346098|gb|EEW57912.1| transcription elongation factor NusA [Silicibacter sp. TrichCH4B] Length = 538 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 275/522 (52%), Positives = 379/522 (72%), Gaps = 2/522 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY ++++ A+ S +G + D +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQSELTVAQAKQYMESPSVGDTIVDEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G+ +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDIGSGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVVSYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TALFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R +G + L G+ ++ AL ++ +K++ED A C+ +L G Sbjct: 423 AQAKAALDNARSMGAEDSLIDFEGLTPQMVEALAKDDVKSLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 G K +G L ++ +++++ AR +GW++ ++ + Sbjct: 483 GERVKDEGILEPFDMSLEEAQNLVMTARIMLGWVDPAELESD 524 >gi|254486422|ref|ZP_05099627.1| transcription termination factor NusA [Roseobacter sp. GAI101] gi|214043291|gb|EEB83929.1| transcription termination factor NusA [Roseobacter sp. GAI101] Length = 537 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 279/519 (53%), Positives = 378/519 (72%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + +IG S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEIGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG TIDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLTIDIMTEEQESARRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR+ LE Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEATAGELQARARDVLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AKNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K +G L ++ + +I+ AR +GW++ ++ Sbjct: 483 GVRTKDEGTLEPFEMTLEEAQHLIMTARVLLGWVDPAEL 521 >gi|86136807|ref|ZP_01055385.1| transcription elongation factor NusA [Roseobacter sp. MED193] gi|85826131|gb|EAQ46328.1| transcription elongation factor NusA [Roseobacter sp. MED193] Length = 541 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 276/524 (52%), Positives = 377/524 (71%), Gaps = 2/524 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ + +G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRSVVEDEALENYQAEMTVEQAKQYMANPAVGDTFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +Q+VREAERDRQ+ EF+D+ G II+ VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQRVREAERDRQFEEFQDRAGTIINALVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+Q+KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIQIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISNDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNDDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D+ TA E+Q RAR++LE Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELTVIDGVDDGTAEELQARARDFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ + AL ++ I T+ED A C+ +L G N Sbjct: 423 AKAKAAIDAARALGAEDSLIQFDGLTPPMVEALAKDEILTLEDFATCADWELAGGWTNDN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 G K DG L G ++ + +++ AR +GW++ + + E Sbjct: 483 GERIKDDGILEPFGMSLEEAQELVMTARVMLGWVDPDDLIGAED 526 >gi|149912925|ref|ZP_01901459.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b] gi|149813331|gb|EDM73157.1| transcription elongation factor NusA [Roseobacter sp. AzwK-3b] Length = 540 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 283/525 (53%), Positives = 382/525 (72%), Gaps = 2/525 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY ++++ A+ IG + +PP+D GR+A QSAKQVI Sbjct: 63 NFTRVRTVVADDELENYQAEMTVDQAKQYLDDPKIGDEFIEEIPPVDLGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRV++YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRVRAYIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V++ E+ I+G D++TA E+Q RAR+ L+ Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDQDTANELQARARDVLD 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +K RELG + L G+ ++ VAL E+G+KT+ED A C+ +L G Sbjct: 423 AQAREAMEKARELGAEDSLIEFEGLTPQMIVALAEDGVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G K +G L ++ ++M++ AR +GW++ ++ + + Sbjct: 483 GQRVKDEGVLEPFEVSLEEAQNMVMTARVMLGWVDPTELEPDLEE 527 >gi|83942070|ref|ZP_00954532.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36] gi|83847890|gb|EAP85765.1| transcription elongation factor NusA [Sulfitobacter sp. EE-36] Length = 542 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 277/527 (52%), Positives = 381/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY + +++ A+ + ++G S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEFTVEQAKQYMANPEVGQEFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRVYIKDVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEE++S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEQESQRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFMDNLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIDGVDEDTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQNKAALDAARALGVDDTLIEFDGLTPQMIEALAKDDVKTLEDFATCADWELAGGWTTVN 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K +G L + + +I+ AR +GW++ ++ ++V + Sbjct: 483 GERTKDEGTLEPFDLSLEDAQKLIMTARVLLGWVDPAELEADDVDEE 529 >gi|85705698|ref|ZP_01036795.1| transcription elongation factor NusA [Roseovarius sp. 217] gi|85669688|gb|EAQ24552.1| transcription elongation factor NusA [Roseovarius sp. 217] Length = 539 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 283/527 (53%), Positives = 380/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRVEI+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPALVVEAMEESLARAAKSRYGSEMDIRVEIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R+ VV + +ENY +++++ A+ +G + +PP++ GR+A QSAKQVI Sbjct: 63 KFTRVRTVVADDALENYQAEMTVEQAKQFLDDPKVGDAFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EFKD+VG II+G VKR EYGNVIVD+G + ++RR+E I RE RP Sbjct: 123 LQKVREAERDRQFEEFKDRVGTIINGVVKREEYGNVIVDVGRGEAILRRNEKIGREAYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV+ YI DVRREQRGPQ+ LSRT PQFM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRVRCYIKDVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATF++NAL+PA V+K Sbjct: 243 IAVISYDSSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQATFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TE EDS RQK+F ER Sbjct: 303 VVIDEDAQRIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAEDSERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ F+ +++DE A LLV+EGF ++EE+A V + E+ I+G DE+TA E+Q RAR+ +E Sbjct: 363 TKLFVDTLDLDEFFAQLLVSEGFTNLEEVAYVDLDELLVIDGVDEDTAAELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K RELGV + L + G+ ++ +AL E+ +K++ED A C+ +L G Sbjct: 423 AQTKAALDKARELGVEDSLIAFEGLTPQMVLALAEDDVKSLEDFATCADWELAGGWTTVK 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K +G L ++ + M++ AR +GW++ ++ + Sbjct: 483 GERVKDEGILEKFDVSLEEAQHMVMTARVMLGWVDPTELETDADDSE 529 >gi|254418431|ref|ZP_05032155.1| NusA N-terminal domain family [Brevundimonas sp. BAL3] gi|196184608|gb|EDX79584.1| NusA N-terminal domain family [Brevundimonas sp. BAL3] Length = 587 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 296/533 (55%), Positives = 388/533 (72%), Gaps = 9/533 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+I+R+VV+ + ++IQK A+S YG DIR +I+ +TG+++ Sbjct: 6 ISANRLELLQIAEAVAREKNIEREVVIEAIEEAIQKGAKSRYGAHHDIRAKIDHKTGELA 65 Query: 62 LFRLLEVVEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +VE+ + + LK A RDP +G + LPP +FGRV Q Sbjct: 66 LTRHVTIVEDDWQPEDELEEFNDSAMVRLKDALKRDPEAVVGKEYVETLPPFEFGRVQTQ 125 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +GV+RRD++I Sbjct: 126 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGVMRRDQSIP 185 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDR+++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL Sbjct: 246 SGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+KVVLDE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 306 PAEVSKVVLDEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F+ERT F +A++VDE+IA LLV EGFA +E+LA V E++ IEGFDEETA E+Q R Sbjct: 366 REFSERTGLFQEALDVDEVIAQLLVTEGFATIEDLAYVDPYEVSEIEGFDEETAEELQAR 425 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 AR++L+ L K ELGV + + +PG+ + VALGE G+KT+EDLA + D++ G Sbjct: 426 ARDFLDRKAAELDAKRVELGVEDGVLQVPGVTLAMAVALGEGGVKTVEDLADLATDEIRG 485 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 E K G K G L S ++ E +I+ AR GWI+ ++ ++A Sbjct: 486 GYEVKNGERVKVPGVLESFNLAQEDAEMLILQARVAAGWIDASELPQPAPEEA 538 >gi|288959698|ref|YP_003450039.1| N utilization substance protein A [Azospirillum sp. B510] gi|288912006|dbj|BAI73495.1| N utilization substance protein A [Azospirillum sp. B510] Length = 510 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 290/519 (55%), Positives = 374/519 (72%), Gaps = 16/519 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +ELLQ+ADAVA EK+IDRD VL M +IQKA RS YG DIR I+ +TGDI L R L Sbjct: 1 MELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHL 60 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE VEN Q++L A+ R +G + DPLPP+DFGR+A Q+AKQVI+QKVR+AE Sbjct: 61 EVVETVENEATQVTLPYAQRRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R RQ+ E+KD+ GEI++G VKRVEYGNV VDLG ++ ++RRDE + RE+ + GDRV++YI Sbjct: 121 RKRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLGRAEAILRRDELLPREHFKNGDRVRAYI 180 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +DVR E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S DS Sbjct: 181 FDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSHDS 240 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ ++ TFV+NAL PA V KVVLD+D Sbjct: 241 SIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVVLDDDNH 300 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 RIEV+VP +QLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R ++ + R+ FMQA+ Sbjct: 301 RIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSALFMQAL 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +VD++IAHLLVAEGF VEE+A V+ E+A IEGFDE A E++ RA +L+ D Sbjct: 361 DVDDVIAHLLVAEGFTSVEEIAFVETEELAEIEGFDESVADELKQRALAFLDVQDEQANL 420 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + ELGV + + + G ++ V LGENG+KT++DLA + D+L+ Sbjct: 421 RRLELGVEDIVAELTGFNATQLVKLGENGVKTLDDLADLAGDELVEI------------- 467 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 L G +++ ++I+ AR W E E+ A Sbjct: 468 -LGKDGPSEEEANAIIMAARAH--WFEGEEQGATAEGSA 503 >gi|297717896|gb|ADI50091.1| transcription termination protein NusA [Candidatus Odyssella thessalonicensis L13] Length = 513 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 276/517 (53%), Positives = 377/517 (72%), Gaps = 16/517 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S R E+L +A+AVA EK I+RD VL M +IQKAAR+ YG D+R +++ TGD++ Sbjct: 13 ISQPRHEILAVAEAVAREKGIERDEVLYAMEQAIQKAARAKYGFEKDVRAKVDKHTGDVN 72 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++++L VVEEVE+ QISL A D S ++G + +PLPP++FGRVA QSA+QVIIQK Sbjct: 73 IWKVLTVVEEVEDPLVQISLTDAHQIDKSYNVGDELVEPLPPIEFGRVAAQSARQVIIQK 132 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER QY EFKD+ +IISG VKRVE+GNVIVDLG ++G++RR++ I RE R GDR Sbjct: 133 VRDAERAHQYAEFKDRANQIISGVVKRVEFGNVIVDLGRAEGILRREDLIQREVFRSGDR 192 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+ DVR + RGP V LSRTHPQFM +LF EVPEIY+G++++K+V+RDPGSRAK+AV Sbjct: 193 VRAYVSDVRPDARGPMVSLSRTHPQFMARLFESEVPEIYDGVIEIKSVARDPGSRAKIAV 252 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +++D SIDPVG+CVG+RG RVQAVVTEL+ EKIDIV WS + ATFV+NAL PA V KVVL Sbjct: 253 YTADPSIDPVGSCVGLRGVRVQAVVTELQGEKIDIVPWSSNPATFVVNALAPAEVIKVVL 312 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ R++++V ++QLSLAIGRRGQNVRLASQLTGW IDI+TEE+++ R +++N RTQ Sbjct: 313 DEEAHRVDMVVAEDQLSLAIGRRGQNVRLASQLTGWNIDIMTEEQEAKLRTEEYNTRTQL 372 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM A++VDE+IA LL A+GF VEEL+ + E+ +IEGFDE A EIQ RA ++E Sbjct: 373 FMNALDVDEVIAQLLAADGFTTVEELSFAPLEELTAIEGFDEAIAQEIQSRALSFVEQRA 432 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 +K ++LGVSEE+ I G+ +++ + L E+ IK+++D A S D+ L ++ Sbjct: 433 KASLEKAKDLGVSEEILEIDGMTAEMLLKLAEHNIKSLDDFADLSGDEFLEIAQEDQ--- 489 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +Q +MI+ AR W ++E A Sbjct: 490 -----------LTLEQANAMIMAARAH--WFDEEPKA 513 >gi|126734454|ref|ZP_01750201.1| transcription termination factor NusA, putative [Roseobacter sp. CCS2] gi|126717320|gb|EBA14184.1| transcription termination factor NusA, putative [Roseobacter sp. CCS2] Length = 538 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 279/518 (53%), Positives = 376/518 (72%), Gaps = 2/518 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 SAN+LELLQ A+AVA EK+I+ +V+ M +S+ +AA+S YG DIRV I+ +TG + Sbjct: 4 TSANQLELLQTAEAVAREKNIEPGLVVEAMEESLARAAKSRYGAEMDIRVAIDRKTGKAT 63 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 R+ VVEE +ENY + ++ A++ ++G + +PP++ GR+A QSAKQVI+ Sbjct: 64 FTRVRTVVEEEELENYQAEFTVAQAKEYMEDPEVGQQFIEEVPPVELGRIAAQSAKQVIL 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVREAERD+QY EFKD+ G II+ VKR EYGNVIVD+G + V+RR+E I RE RP Sbjct: 124 QKVREAERDKQYEEFKDRAGTIINALVKREEYGNVIVDVGAGEAVLRRNEKIGREAYRPN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +I +VRREQRGPQ+ LSRT P+FM +LF MEVPEIY GI+++KAV+RDPGSRAK+ Sbjct: 184 DRIRCFIKEVRREQRGPQIFLSRTAPEFMAELFKMEVPEIYEGIIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+KV Sbjct: 244 AVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F RT Sbjct: 304 VLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEESKRRQAEFELRT 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +++DE A LLV+EGF ++EE+A V++ E+ IEG DE+TA E+Q RAR+YLE Sbjct: 364 KLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVDELLVIEGVDEDTASELQARARDYLEA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + R LGV + L + G+ + ALG++G+KT+ED A C+ +L G G Sbjct: 424 KAKEAMEAARALGVEDSLANFEGLTPAMLEALGQDGVKTLEDFATCADWELAGGWTTVDG 483 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 K DG L ++ + M++ AR +GW++ +++ Sbjct: 484 ERVKDDGVLEPFEVSLEEAQDMVMTARVMLGWVDPDEL 521 >gi|304320433|ref|YP_003854076.1| transcription elongation factor NusA [Parvularcula bermudensis HTCC2503] gi|303299335|gb|ADM08934.1| transcription elongation factor NusA [Parvularcula bermudensis HTCC2503] Length = 525 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 312/510 (61%), Positives = 395/510 (77%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V+AN++EL+QIA AVA EK ID +V+ M D++ +AARS YG +++R EI+P TG+ Sbjct: 3 VTANKIELIQIARAVAQEKMIDPSIVIEAMEDALSRAARSRYGAETNVRAEIDPRTGETR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+RL+EVVE VEN ++SLK A+ ++P +IG +SDPLPP+DFGRVA AKQVI QK Sbjct: 63 LWRLMEVVESVENDAVEVSLKAAQKQNPEAEIGDFISDPLPPIDFGRVAALGAKQVINQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERD QY E+KD+VGEIISG +KR+EYG+VIVDLG + +IRRD+ I RE LR GDR Sbjct: 123 VRDAERDNQYNEYKDRVGEIISGLIKRIEYGHVIVDLGKGEAIIRRDQQIPREPLRQGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YI DVRRE RGPQ+ LSR HPQFM +LF EVPE+Y+G++++KAV+RDPGSRAK+ V Sbjct: 183 VRAYIADVRREPRGPQIFLSRNHPQFMARLFEQEVPEVYDGVIEIKAVARDPGSRAKIGV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+DSSIDPVGACVGMRGSRVQAVV EL EKIDIV WS D+ATFV+NAL PA V KVVL Sbjct: 243 YSNDSSIDPVGACVGMRGSRVQAVVGELGGEKIDIVPWSEDTATFVVNALAPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE++ RIEV+VP EQLSLAIGRRGQNVRLASQLTG+ IDI+TEEE+S RQK++ ER++ Sbjct: 303 DEELERIEVVVPDEQLSLAIGRRGQNVRLASQLTGYEIDIMTEEEESAKRQKEYQERSEI 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VD++IA+LLVAEGFA +EE+A V++ EIA IEGFD+ETA E+Q RA E+LE Sbjct: 363 FMKVLDVDDMIANLLVAEGFARIEEIAYVEVEEIAEIEGFDDETAQELQARALEWLEREQ 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + RELGV + L I G+ K VAL E G+ T+ED AGC DDL GW+E G Sbjct: 423 AELDARRRELGVEDALLEIEGMTLKWSVALAEEGVLTVEDFAGCVADDLTGWTERVDGEK 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 + ++G L D E MI AR ++GW Sbjct: 483 KHYEGMLEKFRVKPDLAEQMIAEARRQVGW 512 >gi|126738452|ref|ZP_01754157.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6] gi|126720251|gb|EBA16957.1| transcription elongation factor NusA [Roseobacter sp. SK209-2-6] Length = 539 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 288/531 (54%), Positives = 387/531 (72%), Gaps = 6/531 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVTIDRKTGKA 62 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV +E+ENY +++++ AR + ++G V S+ +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVADDELENYQAEMTVEQARQYMENPEVGDVFSEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRNGTIINGVVKREEYGNVIVDVGAGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T FM+ +++DE A LLV+EGF ++EE+A V+I E+ I+G DE TA E+Q RAR+YLE Sbjct: 363 TGLFMETLDLDEFFAQLLVSEGFTNLEEVAYVEIEELLVIDGVDEGTAEELQARARDYLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LG + L G+ ++ AL ++ +KT+ED A C+ +L G N G Sbjct: 423 AQAKAAIDAARALGAEDSLIQFDGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTNDG 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV----ADEEVQDA 525 G K DG L G ++ + +++ AR +GW++ E++ + E +DA Sbjct: 483 GERIKDDGILEPFGMSLEEAQDLVMTARIMLGWVDPEELIGDSEEAEGEDA 533 >gi|254460407|ref|ZP_05073823.1| transcription termination factor NusA [Rhodobacterales bacterium HTCC2083] gi|206676996|gb|EDZ41483.1| transcription termination factor NusA [Rhodobacteraceae bacterium HTCC2083] Length = 537 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 286/527 (54%), Positives = 381/527 (72%), Gaps = 2/527 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGAEMDIRVAIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY + +++ A+ + ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEFTVEQAKQYMENPEVGATFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQ+ EF+D+ G II+G VKR EYGNVIVD+G +G++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQFEEFQDRAGTIINGVVKREEYGNVIVDVGRGEGILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I DVRRE RGPQ+ LSRT P+FM +LF MEVPEIY+ I+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKDVRREARGPQIFLSRTAPEFMAELFKMEVPEIYDNIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISHDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F R Sbjct: 303 VVLDEEAGKIEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDIMTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM+A++VDE A LLVAEGF ++EE+A V+I E+ I+G DE+TA E+Q RARE+LE Sbjct: 363 TKLFMEALDVDEFFAQLLVAEGFTNLEEVAYVEIDELLVIDGVDEDTAGELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 K RELG + L + GI ++ L E+G+KT+ED A C+ +L G Sbjct: 423 AKAAAALAKARELGADDSLLTFEGITPQMAEVLAEDGVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K DG L G ++ +SMI+ AR +GW++ ++ DA Sbjct: 483 GERVKDDGLLEQFGMELEEAQSMIMTARVLLGWVDPAELEAAHDDDA 529 >gi|148259243|ref|YP_001233370.1| transcription elongation factor NusA [Acidiphilium cryptum JF-5] gi|326402396|ref|YP_004282477.1| transcription elongation protein NusA [Acidiphilium multivorum AIU301] gi|146400924|gb|ABQ29451.1| NusA antitermination factor [Acidiphilium cryptum JF-5] gi|325049257|dbj|BAJ79595.1| transcription elongation protein NusA [Acidiphilium multivorum AIU301] Length = 506 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 294/513 (57%), Positives = 372/513 (72%), Gaps = 16/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELL +ADAVA EK IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ L R Sbjct: 9 RPELLLVADAVAREKQIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVRLSRW 68 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+VRE Sbjct: 69 TEAVETVENEETQIPIHIARKFKPDIEVGGHLVDPLPPIDFGRIAAQTAKQVIVQRVREY 128 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER RQY E+KD+VGEII+G VKR EYGN++VDLG S+ ++RRDETI RENL GDRV+++ Sbjct: 129 ERKRQYDEYKDRVGEIITGVVKRTEYGNLMVDLGRSEALLRRDETIPRENLHNGDRVRAF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY GI+++KAV+RDPGSRAK+AV S D Sbjct: 189 IYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYEGIIEIKAVARDPGSRAKMAVISRD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP+ ATFV+NAL PA V+KVVLDE+ Sbjct: 249 SSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPNPATFVVNALAPAEVSKVVLDEEA 308 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 G++EV+VP QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ F++A Sbjct: 309 GKVEVVVPDTQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGLFVEA 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD++IA LLV EGF VE+LA + E+A+IEGFDE A E+Q RA LE L+ Sbjct: 369 LDVDDVIAGLLVTEGFEGVEDLAATPVEELAAIEGFDEGIAAELQRRAEVALERKATELE 428 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 K R LGV+++L + G+ + VALGE G+KT++DLA + D+L+ Sbjct: 429 DKRRALGVADDLAGLEGLSPAMLVALGEKGVKTLDDLADLASDELIEIVGADA------- 481 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 +D ++I+ AR W E E+ A Sbjct: 482 -------MDEDAANAIIMAARAH--WFEGEEDA 505 >gi|255262084|ref|ZP_05341426.1| transcription elongation factor NusA [Thalassiobium sp. R2A62] gi|255104419|gb|EET47093.1| transcription elongation factor NusA [Thalassiobium sp. R2A62] Length = 538 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 282/523 (53%), Positives = 374/523 (71%), Gaps = 2/523 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPSLVIEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVEE +ENY + +++ A+ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEEEELENYQAEFTVEQAKQYMEDPEVGQAFVEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKDK G II+ VKR EYGNVIVD+G+ + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDKAGTIINALVKREEYGNVIVDVGSGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI DVRREQRGPQ+ LSRT P+FM KLF MEVPEIY+ I+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKDVRREQRGPQIFLSRTAPEFMAKLFEMEVPEIYDNIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEEDS RQ +F R Sbjct: 303 VVLDEEAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDIMTEEEDSKRRQAEFETR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T+ FM +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RAR++LE Sbjct: 363 TKLFMDTLDLDEFFAQLLVSEGFTNLEEVAYVEVEELLVIDGVDEGTAGELQARARDFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV L G+ ++ AL E+G+KT+ED A C+ +L G + Sbjct: 423 AQNKKALENARALGVENSLVEFEGLTPQMVEALAEDGVKTLEDFATCADWELAGGWTTQD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 G K DG L ++ + M++ AR +GW++ + Sbjct: 483 GERIKDDGVLEKFEISLEEAQDMVMTARIMLGWVDPADLETAS 525 >gi|254510431|ref|ZP_05122498.1| transcription termination factor NusA [Rhodobacteraceae bacterium KLH11] gi|221534142|gb|EEE37130.1| transcription termination factor NusA [Rhodobacteraceae bacterium KLH11] Length = 537 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 279/521 (53%), Positives = 378/521 (72%), Gaps = 2/521 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPGLVVEAMEESLARAAKSRYGAEMDIRVSIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE+ +ENY +++++ A+ + ++G V + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVEDEELENYQAEMTVEQAKQYMEAPEVGQVFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ G II+G VKR E+GNVIVDLG ++ V+RR++ I RE+ RP Sbjct: 123 LQKVREAERDRQYEEFKDRAGTIINGAVKREEFGNVIVDLGGAEAVLRRNDKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DRV++YI +VRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI++VKAV+RDPGSRAK Sbjct: 183 NDRVRAYIKEVRREVRGHQIFLSRTAPEFMAELFKMEVPEIYDGIIEVKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDE+ G+IEV+VP+EQLSLAIGRRGQNVRLASQLT IDI+TE E+S RQK+F R Sbjct: 303 VVLDEEAGKIEVVVPEEQLSLAIGRRGQNVRLASQLTNLDIDIMTEAEESARRQKEFEAR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 TQ FM+ +++DE A LLV+EGF ++EE+A V++ E+ I+G DE TA E+Q RARE+LE Sbjct: 363 TQLFMETLDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQTRAREFLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 R LGV + L G+ ++ AL ++ +KT+ED A C+ +L G Sbjct: 423 AQAKAALDAARALGVEDSLIEFEGLTPQMVEALAKDDVKTLEDFATCADWELAGGWTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G K DG L G ++ + +++ AR +GW++ ++ Sbjct: 483 GERIKDDGVLEPFGVTLEEAQDLVMTARIMLGWVDPAELEQ 523 >gi|197106902|ref|YP_002132279.1| N utilization substance protein A [Phenylobacterium zucineum HLK1] gi|196480322|gb|ACG79850.1| N utilization substance protein A [Phenylobacterium zucineum HLK1] Length = 561 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 307/553 (55%), Positives = 395/553 (71%), Gaps = 28/553 (5%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+ID+++V+ + ++IQK AR+ YG DIRV I+P+TG+ + Sbjct: 6 ISANRLELLQIAEAVAREKAIDKEIVIEAIEEAIQKGARARYGAEHDIRVHIDPKTGETT 65 Query: 62 LFRLLEVVEE-----------------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104 + R++ VV + +E I L A+ RD ++G V + LPP Sbjct: 66 IKRVVTVVADDATFGGGVDPETGEELPIEEPPGIIRLAEAKRRDKDAEVGKVYEELLPPF 125 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV 164 +FGRV Q A+QV++ KVR+AER+RQY E+KD+VGEI++GTVKRVEYGNV+VDLG +G+ Sbjct: 126 EFGRVQTQMARQVVMGKVRDAERERQYEEYKDRVGEIVNGTVKRVEYGNVVVDLGRGEGI 185 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 +RRD++I REN GDR++ YIYDVRRE +GPQ+LLSR H FM KLF EVPE+Y+G++ Sbjct: 186 MRRDQSIPRENFNIGDRIRCYIYDVRRETKGPQILLSRAHGGFMAKLFAQEVPEVYDGVI 245 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +++AV+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A Sbjct: 246 EIRAVARDPGSRAKMAVVSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSQDDA 305 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 TF++NAL PA V+KVV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE Sbjct: 306 TFIVNALAPAEVSKVVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTE 365 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++S RQ++F ERT F +A++VDE+IA LLV EGFA VE++ V SEI++IEGFDE+ Sbjct: 366 SQESERRQREFTERTALFQEALDVDEVIAQLLVTEGFATVEDVGYVDPSEISAIEGFDED 425 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464 TA EIQ RAREYLE K RELGV + L I GI + VALGE GIKT+EDLAG Sbjct: 426 TAEEIQTRAREYLEKEAAEYDAKRRELGVEDGLLDIEGITLPMAVALGEGGIKTVEDLAG 485 Query: 465 CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI-----------E 513 DDL GW E K G + G L + G E +I+ AR MGW+ Sbjct: 486 LVPDDLRGWFETKNGERVREPGILETFGLDAQDAELLIMRARIVMGWVEAPEEPEAEEPT 545 Query: 514 KEKVADEEVQDAS 526 E A+ E+ + Sbjct: 546 DEDFAEAEMAGEA 558 >gi|23016102|ref|ZP_00055862.1| COG0195: Transcription elongation factor [Magnetospirillum magnetotacticum MS-1] Length = 502 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 296/514 (57%), Positives = 375/514 (72%), Gaps = 16/514 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+Q Sbjct: 64 QLARYIEVVEEVENEATQQTLKQVLKKKPDAQVGDFLVDPLPPIDFGRIAAQTAKQVIVQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GD Sbjct: 124 KVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++YIYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+A Sbjct: 184 RVRAYIYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVV Sbjct: 244 VQSHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+ Sbjct: 304 LDEEAGRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L Sbjct: 364 MFIQALDVDDVIAHLLVTEGFSSVEEVAYVPSEDIADIEGFDENVAEELQTRARNFLAEQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+LL Sbjct: 424 DERYDQMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELLDI------- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 L +D+ ++I+ AR W E+ Sbjct: 477 -------LGKDAMSEDEANAVIMAARAH--WFEE 501 >gi|114769758|ref|ZP_01447368.1| transcription elongation factor NusA [alpha proteobacterium HTCC2255] gi|114549463|gb|EAU52345.1| transcription elongation factor NusA [alpha proteobacterium HTCC2255] Length = 542 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 294/519 (56%), Positives = 386/519 (74%), Gaps = 2/519 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++ Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G K DG L S + + MI+ AR ++GW+ +E++ Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVTEEQL 521 >gi|163796764|ref|ZP_02190722.1| Transcription elongation factor [alpha proteobacterium BAL199] gi|159178018|gb|EDP62565.1| Transcription elongation factor [alpha proteobacterium BAL199] Length = 517 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 283/516 (54%), Positives = 375/516 (72%), Gaps = 16/516 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + +LEL+Q+AD VA +K IDR+ VL M +IQKA RS YG DIR I+ TG+I Sbjct: 3 IATQPKLELIQVADVVARDKGIDREEVLIAMEQAIQKAGRSKYGPDHDIRATIDRRTGEI 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SL R VVEE+E+ QI+L A+ DP+++IG V+S+PLPP+DFGR+A Q+AKQVI+Q Sbjct: 63 SLKRCTTVVEEIEDEISQITLAQAQKIDPALEIGSVISEPLPPIDFGRIAAQTAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVRE ER RQY E+KD+ GEII+G+VKRVEYGNV V++ ++ ++RRD + RE R GD Sbjct: 123 KVREFERQRQYEEYKDRSGEIINGSVKRVEYGNVTVEIQRAEAILRRDRLLPRETFRQGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++YI DVR E RGPQ+ LSRTHP+FM +LF EVPE+Y+GI+++KAV+RDPGSRAK+A Sbjct: 183 RIRAYIEDVRSEPRGPQIFLSRTHPEFMRQLFRQEVPEVYDGIIEIKAVARDPGSRAKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATFV+NAL PA V+KVV Sbjct: 243 VISYDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSDDPATFVVNALAPAEVSKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L ED GRIEV+VP EQLSLAIGRRGQNVRLAS LTGW IDI+TE+E+S R+++F R+ Sbjct: 303 LHEDAGRIEVVVPDEQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESDRRKEEFRVRSD 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+++D++IA LLVAEGF VEE+A V + ++A IEGFD + A E+Q RA ++E Sbjct: 363 TFITALDIDDVIAGLLVAEGFTSVEEIADVDLEDLAEIEGFDVDIAGELQMRALNHVEAE 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + L+ ELGV++E+ ++ + + VALGE G+KT++D A + D+LL Sbjct: 423 RVRLEALRTELGVTDEVAALEALSPAMLVALGEKGVKTLDDFADLASDELLEI------- 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 L + +D +I+ AR W + E Sbjct: 476 -------LPADSMDEDTANDLIMAARAH--WFDDED 502 >gi|83313172|ref|YP_423436.1| transcription elongation factor NusA [Magnetospirillum magneticum AMB-1] gi|82948013|dbj|BAE52877.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1] Length = 503 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 295/514 (57%), Positives = 375/514 (72%), Gaps = 16/514 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L R +EVVEEVEN Q +LK + P +G + DPLPP+DFGR+A Q+AKQVI+Q Sbjct: 64 QLARYIEVVEEVENEATQQTLKQVLKKKPDAVVGDFLVDPLPPIDFGRIAAQTAKQVIVQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R GD Sbjct: 124 KVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++YIYDVR+E RGPQ+ LSRTHP FM KLF EVPEIY+GI+++KAV+RDPGSRAK+A Sbjct: 184 RVRAYIYDVRQEPRGPQIFLSRTHPIFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATFV+N L PA VTKVV Sbjct: 244 VLSHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDVATFVVNGLAPAEVTKVV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S R ++F R+ Sbjct: 304 LDEEAGRIEVVVPDDQLSLAIGRRGQNVRLASQLTQWNIDILTEAEESERRTEEFRSRSN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VD++IAHLLV EGF+ VEE+A V +IA IEGFDE A E+Q RAR +L Sbjct: 364 MFIQALDVDDVIAHLLVTEGFSSVEEVAYVPAEDIADIEGFDENVAEELQTRARNFLAEQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D + +++GV++E+ +I G+ + V LG+ GIKT++DL + D+L+ Sbjct: 424 DERYDQMRKDMGVADEMAAIEGLAPSMLVKLGDKGIKTLDDLGDLAGDELIDI------- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 L +D+ ++I+ AR W E+ Sbjct: 477 -------LGKDAMTEDEANAVIMAARAH--WFEE 501 >gi|254438705|ref|ZP_05052199.1| NusA N-terminal domain family [Octadecabacter antarcticus 307] gi|198254151|gb|EDY78465.1| NusA N-terminal domain family [Octadecabacter antarcticus 307] Length = 537 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 276/526 (52%), Positives = 376/526 (71%), Gaps = 2/526 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E +ENY + +++ AR+ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVAEAELENYQAEFTVEQAREYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ +I +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCFIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++++++DE A LLV+EGF +EE+A V + E+ I+G D +TA E+Q RAR+ +E Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVDVDELLVIDGVDADTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + RELGV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 AKNNKAMENARELGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 G K DG L ++ ++MI+ AR +GW++ + + + D Sbjct: 483 GERTKDDGSLEPFEVSLEEAQTMIMTARVMLGWVDPDDLVKDAEDD 528 >gi|114799070|ref|YP_758846.1| transcription termination factor NusA [Hyphomonas neptunium ATCC 15444] gi|114739244|gb|ABI77369.1| transcription termination factor NusA [Hyphomonas neptunium ATCC 15444] Length = 592 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 289/528 (54%), Positives = 378/528 (71%), Gaps = 3/528 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLE+LQIA AVA EKSID+ +V+ M ++I+KAA++ YG DIR +I+P TG+ + Sbjct: 6 VSANRLEILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQT 65 Query: 62 LFRLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L+R+ VV++ E+ Q+ L A+ D ++ G + + LPP DFGRVA Q+AKQVI Sbjct: 66 LWRIQTVVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVIT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVR+AER+RQY E+KD+VGEI+SG VKRVEYG+VIVDLG ++G+IRR++ I REN +P Sbjct: 126 QKVRDAERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGRAEGIIRRNDGIPRENFQPN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+Y V RE +GPQ+ LSR P FM KLF EVPE+Y G++Q+KA +RDPGSRAK+ Sbjct: 186 DRVRAYLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKI 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 V S+DSSIDPVGACVGMRG+RVQAVV EL EKIDI+ WS D+ATF++N L+PA V+KV Sbjct: 246 GVISNDSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDED R+EV+V +Q LAIGRRGQNVRLASQLTGW ID+ITE DS QK+F ERT Sbjct: 306 VLDEDERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 FM+A++ DE +A LL +EGF VEE+A V + +IEGFD++ A E+Q RAREYL+ Sbjct: 366 DLFMKALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDR 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN-KG 478 + K RELGV++E+ + G+ V LGE G+KT+ED+AG DD+ G+ E Sbjct: 426 VATENDAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDITGYREPGPD 485 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 G +G L KD ++ AR GWIE E + + Q S Sbjct: 486 GKPVWVEGILKKGEMRKDDANLFVMKARVAAGWIEPEAIEEMLAQQQS 533 >gi|161170254|gb|ABX59224.1| transcription elongation factor [uncultured marine bacterium EB000_55B11] gi|297183783|gb|ADI19906.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 542 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 293/515 (56%), Positives = 382/515 (74%), Gaps = 2/515 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SANRLELLQIAD+VA EK ID D+VL M +S KAA+S YG DIR I+ ++G++ Sbjct: 3 ITSANRLELLQIADSVAREKMIDPDLVLQAMEESYAKAAKSKYGAELDIRAFIDRKSGEL 62 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VVE E EN +++++ A+ +G ++ D LPPMDFGR+ QSAKQVI Sbjct: 63 EMTRVRVVVEGTEAENMYTEMTVEEAKAHKEEPSVGDLIIDKLPPMDFGRIGAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERDRQY EFKD+ GEII+G VKRVEYGNVIVD+G + V RRD+ ++RE R Sbjct: 123 LQKVREAERDRQYEEFKDRQGEIINGLVKRVEYGNVIVDVGRGEAVCRRDQLVNREMFRN 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++++I +VR E RGPQV LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK Sbjct: 183 GDRIRAFIKEVRSEMRGPQVFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V S D+SIDPVGACVGMRGSRVQAVV EL EKIDI+ W+ D+ TF++NAL+PA VTK Sbjct: 243 IGVISFDNSIDPVGACVGMRGSRVQAVVNELGGEKIDIIPWNEDAPTFLVNALQPAEVTK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTG IDI+TE ++S RQK+F ER Sbjct: 303 VVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTETDESERRQKEFEER 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +Q FM +NVDE++A LLV+EGF+ +EE+A V+ E+ IEGFD++T E+Q RARE LE Sbjct: 363 SQLFMDTMNVDEVVAQLLVSEGFSSLEEVAYVETDELLMIEGFDQDTVDELQARARESLE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I+ + RELGV+++L G+ ++ VALG++ +K++ED A C+ +L G Sbjct: 423 EINAKSIAEARELGVAQDLIDFEGLSPQMLVALGKDDVKSLEDFATCADWELAGGYTTVD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G K DG L S + + MI+ AR ++GW+ Sbjct: 483 GERHKDDGVLESFEVNIQEAQDMIMRARLQIGWVT 517 >gi|302381338|ref|YP_003817161.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302191966|gb|ADK99537.1| NusA antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 296/521 (56%), Positives = 382/521 (73%), Gaps = 9/521 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIA+AVA EK+IDR++V+ + ++IQK A+S YG DIR I+P+TG+++ Sbjct: 6 ISANRLELLQIANAVAQEKNIDREIVIEALEEAIQKGAKSRYGAHHDIRARIDPKTGELA 65 Query: 62 LFRLLEVVEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +VE+ + + L A RDP +G + LPP +FGRV Q Sbjct: 66 LTRHVTIVEDDWMPEDELEEFNDSAMVRLTDASKRDPEAVVGKEYVEDLPPFEFGRVQTQ 125 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QVI KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I Sbjct: 126 MARQVITGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 185 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDR+++YIYDVR E +GPQ++LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 186 REVFNIGDRIRTYIYDVRPEAKGPQIMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 245 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+PD TF++NAL Sbjct: 246 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALA 305 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 306 PAEVSKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F+ERT F +A++VDE+IA LLV EGFA VE+LA V E+A IEGFDE+TA E+Q R Sbjct: 366 REFSERTTLFQEALDVDEVIAQLLVTEGFATVEDLAFVDNYEVAEIEGFDEDTAEELQAR 425 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 AR++LE L K ELGV + + ++PG+ I VALGE G+KT+EDLA + D++ G Sbjct: 426 ARDFLERQAAILDAKRVELGVEDGVMAVPGVTGAIAVALGEGGVKTVEDLADLATDEIRG 485 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 E K G K G L S ++ E +I+ AR GWI+ Sbjct: 486 GYEMKNGERVKVPGVLESFNLAQEDAELLILQARVAAGWID 526 >gi|258543556|ref|YP_003188989.1| transcription elongation factor NusA [Acetobacter pasteurianus IFO 3283-01] gi|329113267|ref|ZP_08242050.1| Transcription elongation protein NusA [Acetobacter pomorum DM001] gi|256634634|dbj|BAI00610.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-01] gi|256637690|dbj|BAI03659.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-03] gi|256640744|dbj|BAI06706.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-07] gi|256643799|dbj|BAI09754.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-22] gi|256646854|dbj|BAI12802.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-26] gi|256649907|dbj|BAI15848.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-32] gi|256652897|dbj|BAI18831.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655951|dbj|BAI21878.1| transcription termination/elongation factor NusA [Acetobacter pasteurianus IFO 3283-12] gi|326697408|gb|EGE49066.1| Transcription elongation protein NusA [Acetobacter pomorum DM001] Length = 514 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 284/523 (54%), Positives = 371/523 (70%), Gaps = 16/523 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAV+ EK I+R+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVSREKGIEREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R EVV+EVEN QI+L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEVVDEVENEDTQIALSIARKFRPEIQAGEYLIDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE R DR Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLLVEIGSAEALLRRDELIPRETFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F RT Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRTAL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+ IEGFDE E+ RA YL + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADPDELIGIEGFDESVVQELVQRAESYLVQQE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + +ELGV +++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 423 QKLDDRRKELGVVDDIADMGVFTNQMLVTLGEKGVKTLDDLADLAGDELVEI-------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 L + +D +I+ AR W E E + ++ Sbjct: 475 ------LGTDAIEEDAANEIIMAARAH--WFEDENQQPSDTKE 509 >gi|329847354|ref|ZP_08262382.1| transcription elongation protein nusA [Asticcacaulis biprosthecum C19] gi|328842417|gb|EGF91986.1| transcription elongation protein nusA [Asticcacaulis biprosthecum C19] Length = 564 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 303/513 (59%), Positives = 384/513 (74%), Gaps = 2/513 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELLQIADAVA EK ID+ VV++ + ++IQKAARS YG DIRV I+P+ G+++ Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVIASIEEAIQKAARSRYGADHDIRVHIDPKWGEMT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + R + VV EEVEN Q SL A D +G + LPP + GRV Q A+QV+ Sbjct: 66 ITRHVTVVGDEEVENEYAQKSLSDALREDKEAFVGKEYVETLPPFELGRVQTQMARQVVT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+RQY EFKD+VGEI++GTV+RVEYGNVIVDLG +G++RRD++I RE + Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVRRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPEIY+G++++K+V+RDPGSRAK+ Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEIYDGVIEIKSVARDPGSRAKM 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA VTKV Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSPDEATFIVNALAPAEVTKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ R+EV+VP EQLSLAIGRRGQNVRL SQLTGW +DIITE +DS RQK+F ERT Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLGSQLTGWQVDIITESQDSERRQKEFAERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A++VDE+IA LLV EGF VE+LA V +EIA+IEGFDE+TA E+Q RAR++LE Sbjct: 366 ALFQEALDVDEVIAQLLVTEGFTSVEDLAYVDENEIAAIEGFDEDTAQELQARARDFLER 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 K +ELGV + + + G+ + VALGE G+KT+EDLA + D+L G E KGG Sbjct: 426 ETAEQDAKRKELGVEDGVLEVQGVTLPMAVALGEAGVKTVEDLADLATDELRGGFEQKGG 485 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L S ES+I++AR GWI Sbjct: 486 ERVRVPGALESFTLSVPDAESLILNARVTAGWI 518 >gi|254452567|ref|ZP_05066004.1| transcription termination factor NusA [Octadecabacter antarcticus 238] gi|198266973|gb|EDY91243.1| transcription termination factor NusA [Octadecabacter antarcticus 238] Length = 538 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 274/523 (52%), Positives = 374/523 (71%), Gaps = 2/523 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID +V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKQIDPILVVEAMEESLARAAKSRYGSEMDIRVHIDRKTGKA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + R+ VV E +ENY + +++ A++ ++G + +PP++ GR+A QSAKQVI Sbjct: 63 TFTRVRTVVAEAELENYQSEFTVEQAKEYMEDPEVGQEFIEEVPPVEMGRIAAQSAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +QKVREAERD+QY +FKD+ G II+ VKR EYGNVIVD+G + ++RR+E I RE+ RP Sbjct: 123 LQKVREAERDKQYEDFKDRAGTIINAQVKREEYGNVIVDVGTGEAILRRNEKIGRESYRP 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ YI +VRREQRGPQ+ LSRT PQFM +LF MEVPEIY GI+++KAV+RDPGSRAK Sbjct: 183 NDRIRCYIKEVRREQRGPQIFLSRTDPQFMAELFKMEVPEIYEGIIEIKAVARDPGSRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL+PA V+K Sbjct: 243 IAVISYDNSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDMPTFLVNALQPAEVSK 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV DED RIEV+VP+EQLSLAIGRRGQNVRLASQLTG IDI+TEEE+S RQ +F R Sbjct: 303 VVFDEDAERIEVVVPEEQLSLAIGRRGQNVRLASQLTGLDIDILTEEEESKRRQAEFELR 362 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F++++++DE A LLV+EGF +EE+A V++ E+ I+G D +TA E+Q RAR+ +E Sbjct: 363 TGLFIESLDLDEFFAQLLVSEGFTTLEEVAYVEVEELLVIDGVDADTASELQARARDVIE 422 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + R LGV + L G+ ++ AL +G+KT+ED A C+ +L G Sbjct: 423 AKNNKAMENARALGVEDSLVEFEGLTPQMIEALANDGVKTLEDFATCADWELAGGWTVTD 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 G K DG L ++ + MI+ AR +GW++ + + + Sbjct: 483 GERTKDDGSLEPFEVSLEEAQKMIMTARVMLGWVDPDDLVKDT 525 >gi|315497224|ref|YP_004086028.1| nusa antitermination factor [Asticcacaulis excentricus CB 48] gi|315415236|gb|ADU11877.1| NusA antitermination factor [Asticcacaulis excentricus CB 48] Length = 546 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 300/513 (58%), Positives = 385/513 (75%), Gaps = 2/513 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELLQIADAVA EK ID+ VVL+ + +++QKAARS YG DIRV ++P TG+++ Sbjct: 6 ISANRQELLQIADAVAREKQIDKSVVLASIEEAVQKAARSRYGADHDIRVRVDPRTGEMT 65 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + R + VV EE+EN Q L A D +G + LPP + GRV Q A+QV+ Sbjct: 66 ITRYVTVVPDEELENEYAQRGLTEALREDKDAFVGKTYDEVLPPFELGRVQSQMARQVVT 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVREAER+RQY EFKD+VGEI++GTVKRVEYGNVIVDLG +G++RRD++I RE + Sbjct: 126 HKVREAERERQYDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIMRRDQSIPREAFQVN 185 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G++++K+V+RDPGSRAK+ Sbjct: 186 DRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIKSVARDPGSRAKM 245 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD ATF++NAL PA V+KV Sbjct: 246 AVLSNDNSIDPVGACVGMRGSRVQAVVGELQGEKIDIIQWSPDEATFIVNALAPAEVSKV 305 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW +DIITE +DS RQK+F ERT Sbjct: 306 VLDEEEDRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQVDIITESQDSERRQKEFAERT 365 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A++ DE+IA LLV EGF+ VE+LA V EIA+IEGFDE+TA E+Q RAR+YLE Sbjct: 366 ALFQEALDADEVIAQLLVTEGFSTVEDLAYVDQMEIAAIEGFDEDTAAELQARARDYLER 425 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + K ELGV +E+ ++PGI + VALGE G+KT+EDLA + D++ G E +G Sbjct: 426 FEAEQNAKRVELGVEDEVLNVPGITLAMAVALGEAGVKTVEDLADLATDEVRGGFEQRGA 485 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + G L S E++I++AR GWI Sbjct: 486 EKVRVPGALESFSLSVADAEALILNARIAAGWI 518 >gi|144897846|emb|CAM74710.1| transcription elongation protein [Magnetospirillum gryphiswaldense MSR-1] Length = 503 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 282/516 (54%), Positives = 368/516 (71%), Gaps = 17/516 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + + R ELLQ+ADAVA +K IDRD VL M +IQKA RS YG DIR I+ +TG+I Sbjct: 4 IAALPRPELLQVADAVARDKGIDRDEVLEAMEQAIQKAGRSKYGHEHDIRAHIDRKTGEI 63 Query: 61 SLFRLLEVVEEVENY-TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L R +EVVEE Q+ L A ++P G + DPLPP+DFGR+A Q+AKQVI+ Sbjct: 64 QLARYIEVVEEEVENEATQLPLARALKKNPGAKAGDFLVDPLPPIDFGRIAAQTAKQVIV 123 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QKVR+AER RQ+ E+KD+VGEI +G VKRVE+GNVIVDLG ++ ++RRDE I RE R G Sbjct: 124 QKVRDAERQRQFNEYKDRVGEISNGLVKRVEFGNVIVDLGRAEALLRRDELIPRETFRTG 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++YI DVR+E RGPQ+ LSRT P FM KLF EVPEIY+GI+++KAV+RDPGSRAK+ Sbjct: 184 DRVRAYIADVRQEPRGPQIFLSRTSPIFMSKLFAQEVPEIYDGIIEIKAVARDPGSRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS + ATFV+NAL PA V+KV Sbjct: 244 AVISHDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSGEYATFVVNALAPAEVSKV 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VLD++ +EV+VP +QLSLAIGRRGQNVRLASQLTGW+IDI+TE E+S R ++F R+ Sbjct: 304 VLDDETHTMEVVVPDDQLSLAIGRRGQNVRLASQLTGWSIDIMTEAEESERRNEEFRSRS 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F+ A++VD++IAHLLV EGF VEE+A V + +++ IEGFDE+ A E+Q RAR +L Sbjct: 364 KLFIDALDVDDVIAHLLVTEGFTTVEEVAYVPLEDLSGIEGFDEDVAAELQQRARTFLAE 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 D ++LGVS+E+ ++ G+ + V LG IKT++DL + D+L+ Sbjct: 424 QDERYDAMRKDLGVSDEMAALEGLSPAMLVKLGHREIKTLDDLGDLASDELIDI------ 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + +DQ ++I+ AR W + E Sbjct: 478 --------VGKDEMNEDQANAVIMAARAH--WFDGE 503 >gi|58040013|ref|YP_191977.1| transcription elongation factor NusA [Gluconobacter oxydans 621H] gi|58002427|gb|AAW61321.1| N utilization substance protein A NusA [Gluconobacter oxydans 621H] Length = 517 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 281/523 (53%), Positives = 372/523 (71%), Gaps = 16/523 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S R ELL +ADAV+ EK+IDR+ VL M +IQKA R+ YG DIR I+ +TG++ Sbjct: 3 TSVTRPELLLVADAVSREKNIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGEVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI L +AR P I G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEHVENEDTQIPLHIARKFQPEIQAGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYNEFKDRVGEIVNGTVKRTEYGNLMVEIGHTEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDAAIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRSSQ 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+ IEGFDE A E+ RA +YL + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHTIEELAYTDPGELNDIEGFDESVAEELMHRANDYLASKE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L + + LGV++++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 423 QALDDQRKALGVTDDVAELGTFTNQMLVTLGEKGVKTLDDLADLAGDELVEI-------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 L +D +I+ AR W + E+ + ++ Sbjct: 475 ------LGEEAIDEDAANEIIMAARAH--WFDGEEADSAKPEN 509 >gi|241761099|ref|ZP_04759188.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374718|gb|EER64179.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 538 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 281/529 (53%), Positives = 386/529 (72%), Gaps = 7/529 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+ Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGASVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+ Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++ Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE + Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476 +++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+ Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + + DG L+ G ++Q +I+ AR W + + +D Sbjct: 485 HSSDNNEEDGILAEYGLSQEQGNEIIMAARAH--WFDDAEDETHSSEDT 531 >gi|260752935|ref|YP_003225828.1| transcription elongation factor NusA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856277|ref|YP_162291.2| transcription elongation factor NusA [Zymomonas mobilis subsp. mobilis ZM4] gi|258552298|gb|ACV75244.1| NusA antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775273|gb|AAV89180.2| NusA antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 538 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 281/529 (53%), Positives = 386/529 (72%), Gaps = 7/529 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IADAVA EK IDR +V+ M ++IQ+AAR+ YG +DIR +I+P+TGD+ Sbjct: 5 ISANKAELLAIADAVAREKLIDRAIVIEAMEEAIQRAARARYGAENDIRAKIDPKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVV++V+++ Q+S+ A+ +G + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVDQVDDFFKQVSVVDAQKLQNGAAVGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD++GEII+G VKR+E+G+V+VDLG ++G +RRD+ I RE R GDR Sbjct: 125 VRDAERERQYAEFKDRIGEIITGIVKRIEFGHVVVDLGRAEGALRRDQQIPRETFRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I +VRRE RGPQ+LLSR+HP FM KLF EVPEIY+GI+++KA SRDPGSRAK+AV Sbjct: 185 VRSLIMNVRRENRGPQILLSRSHPNFMKKLFAQEVPEIYDGIIEIKACSRDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D ATFV+N+L+PA V++VV+ Sbjct: 245 VSQDNTIDPVGACVGMKGSRVQAVVQEVQGEKIDIIPWSEDLATFVVNSLQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIE +VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F ++ Sbjct: 305 DEDDSRIEAVVPDDQLSLAIGRRGQNVRLASQLTGSAIDILTEADASERRQKEFVAHSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V +EI++IEG DEE A E+Q RARE LE + Sbjct: 365 FQHDLDVDETLAQLLVAEGFGSLEEVAYVDQAEISAIEGIDEELASELQNRAREALEQRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476 +++ R+LGV + L +P + + + LG+ GIKT++DL S D+L+ Sbjct: 425 AEAREERRKLGVEDALADLPYMTEAMLLTLGKAGIKTLDDLGDLSTDELVHKKRQDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 + + DG L+ G ++Q +I+ AR W + + +D Sbjct: 485 HSSDNNEEDGILAEYGLSQEQGNEIIMAARAH--WFDDAEDETHSSEDT 531 >gi|329891253|ref|ZP_08269596.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC 11568] gi|328846554|gb|EGF96118.1| transcription elongation protein nusA [Brevundimonas diminuta ATCC 11568] Length = 576 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 295/533 (55%), Positives = 382/533 (71%), Gaps = 9/533 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELL IADAVA EK+IDR++V+ + ++IQK A+S YG DIR +I+ +TG++S Sbjct: 4 ISANRLELLSIADAVAREKNIDREIVIEAIEEAIQKGAKSRYGAHHDIRAQIDHKTGELS 63 Query: 62 LFRLLEVVEEVENYTCQ---------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 L R + +V + + + L+ A RD ++G + LPP +FGRV Q Sbjct: 64 LTRHVTIVADDWQPEDELEEFNDSAMVRLRDALKRDAEAEVGKEYVEVLPPFEFGRVQTQ 123 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS 172 A+QV+ KVREAER QY EFKD+VGEI++GTVKRVEYGN IVDLG +G++RRD++I Sbjct: 124 MARQVVTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLGRGEGIMRRDQSIP 183 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE GDRV++YIYDVR E +GPQV+LSR HP FM KLF EVPE+Y+G+++++A +RD Sbjct: 184 REVFNVGDRVRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARD 243 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 GSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D TF++NAL Sbjct: 244 AGSRAKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNEDEPTFIVNALA 303 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V KVVLDE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDIITE +DS RQ Sbjct: 304 PAEVAKVVLDEEADRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITESQDSERRQ 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 ++F ERT F +A++VDE IA LLV EGFA VE+LA V+ EI+ IEGFDE+TA E+Q R Sbjct: 364 REFAERTALFQEALDVDETIAQLLVTEGFATVEDLAFVEAYEISEIEGFDEDTAEELQTR 423 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG 472 ARE+LE L K LGV + + +PG+ + I VALGE G+KT+EDLA + D++ G Sbjct: 424 AREHLERQAAELDAKRVALGVEDGVLDVPGVTAAIAVALGEGGVKTVEDLADLATDEIRG 483 Query: 473 WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 E +GG K G L S ++ E +I+ AR GWI+ ++ E + Sbjct: 484 GYEVRGGERVKVPGVLESFNLSQEDAEMLILQARVAAGWIDASELPQPEYVEE 536 >gi|254456337|ref|ZP_05069766.1| transcription termination factor [Candidatus Pelagibacter sp. HTCC7211] gi|207083339|gb|EDZ60765.1| transcription termination factor [Candidatus Pelagibacter sp. HTCC7211] Length = 517 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 244/507 (48%), Positives = 352/507 (69%), Gaps = 3/507 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A++LELL+IA+AVA EKSID+++++S M I KAA+S +G ++I+V I+ ++GDI +F Sbjct: 6 ADKLELLRIAEAVALEKSIDKELIISSMETGIAKAAKSKFGQDNEIKVSIDRDSGDIEIF 65 Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L V E EN +I L+ A + + +G V PLP DFGR+A Q+AKQVI Sbjct: 66 RKLIVAENPENSNTEIKLEDAIILNEINKDKAVGDEVLQPLPSFDFGRIAAQTAKQVISF 125 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVI DLG ++ +I+++E I REN++ GD Sbjct: 126 NVREAERERQYNDFIDKKDTILSGIVKRLEFGNVIADLGRTEAIIQKNEMIPRENIKAGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y YDVRRE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ SRDPGSRAK+ Sbjct: 186 RIKAYCYDVRREPRGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSSRDPGSRAKIC 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAILVSNALSPAEVQRVN 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D + +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 306 VDIERKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQVEFKEKTE 365 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ ++++ + IEG +E+TA+ + RA+E+ + Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSIDDIKDTTAENLMKIEGIEEDTAIALIERAKEFHQKD 425 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I+ELG+ + L ++ G+ + V LGE I T+ED A + D+L G + G Sbjct: 426 QEDISERIKELGLQDSLINLKGLTPGMLVTLGEQKILTLEDFADLASDELTGGYDVVKGE 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARY 507 K G+L K++ + +I+ AR Sbjct: 486 RVKIQGYLEDFALSKEEADELIMSARK 512 >gi|123440812|ref|YP_001004803.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160078|ref|YP_004296655.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087773|emb|CAL10559.1| N utilization substance protein A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607362|emb|CBY28860.1| transcription termination protein NusA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664308|gb|ADZ40952.1| transcription elongation factor NusA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862029|emb|CBX72196.1| transcription elongation protein nusA [Yersinia enterocolitica W22703] Length = 495 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 317/510 (62%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVINREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|330991197|ref|ZP_08315149.1| Transcription elongation protein nusA [Gluconacetobacter sp. SXCC-1] gi|329761690|gb|EGG78182.1| Transcription elongation protein nusA [Gluconacetobacter sp. SXCC-1] Length = 523 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 285/524 (54%), Positives = 371/524 (70%), Gaps = 16/524 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ TGD+ Sbjct: 11 TSVARPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRRTGDVR 70 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 71 LSRWTEAVETVENEETQIPLYIARKFKPEIQLGEYLIDPLPPIDFGRIAAQTAKQVIVQR 130 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQ+ +FKD+VGEII+GTVKR EYGN++V++G+++ ++RRDE I RE+ R DR Sbjct: 131 VREYERRRQFNDFKDRVGEIINGTVKRTEYGNLLVEIGDAEALLRRDELIPRESFRNSDR 190 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 191 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 250 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D++IDPVGACVG+RG RVQ VV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 251 ISRDAAIDPVGACVGVRGRRVQEVVKELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 310 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 311 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSSQ 370 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++VD++IA LLV EGF VEELA E+A+IEGFDE+ A E+ RA +L + Sbjct: 371 FVTSLDVDDVIAGLLVTEGFHSVEELAFADPEELANIEGFDEDVAGELVLRAERHLAQQE 430 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K RELGVS+++ + +++ V LGE G+KT++DLA + D+L+ Sbjct: 431 EQLDEKRRELGVSDDIAVLGVFTNQMLVTLGEKGVKTLDDLADLAGDELVEI-------- 482 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 L S +D +I+ AR W E + D E Sbjct: 483 ------LGSDAIDEDAANEIIMAARAH--WFEGDDRGDAEPGKE 518 >gi|238761767|ref|ZP_04622741.1| Transcription termination factor NusA [Yersinia kristensenii ATCC 33638] gi|238699881|gb|EEP92624.1| Transcription termination factor NusA [Yersinia kristensenii ATCC 33638] Length = 495 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 316/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DPSI +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLDAAQYEDPSIQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLG++ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGHNAEAVINREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238750125|ref|ZP_04611628.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380] gi|238711669|gb|EEQ03884.1| Transcription termination factor NusA [Yersinia rohdei ATCC 43380] Length = 495 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 317/510 (62%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITIEAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPVKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|91762480|ref|ZP_01264445.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1002] gi|91718282|gb|EAS84932.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1002] Length = 530 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 242/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F Sbjct: 19 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 78 Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L VVE+ EN +I+L+ A + + IG + PLP DFGR+A Q+AKQVI Sbjct: 79 RKLIVVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 138 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD Sbjct: 139 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 198 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+ Sbjct: 199 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 258 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 259 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 318 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 319 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 378 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ + Sbjct: 379 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 438 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G Sbjct: 439 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K + + +I+ AR Sbjct: 499 RIKIQGYLEDFALSKTEADELIMSAR 524 >gi|293393154|ref|ZP_06637469.1| N utilization substance A [Serratia odorifera DSM 4582] gi|291424300|gb|EFE97514.1| N utilization substance A [Serratia odorifera DSM 4582] Length = 495 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 203/510 (39%), Positives = 312/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPSI++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEDPSIELGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V ++ +DLG + + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGGNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G Q +I+ AR + W Sbjct: 472 -------GLSDQQAGELIMAAR-NICWFGD 493 >gi|238783516|ref|ZP_04627538.1| Transcription termination factor NusA [Yersinia bercovieri ATCC 43970] gi|238797553|ref|ZP_04641050.1| Transcription termination factor NusA [Yersinia mollaretii ATCC 43969] gi|238715571|gb|EEQ07561.1| Transcription termination factor NusA [Yersinia bercovieri ATCC 43970] gi|238718550|gb|EEQ10369.1| Transcription termination factor NusA [Yersinia mollaretii ATCC 43969] Length = 495 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I+L+ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTMPTREITLEAAQYEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238787593|ref|ZP_04631391.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC 33641] gi|238724380|gb|EEQ16022.1| Transcription termination factor NusA [Yersinia frederiksenii ATCC 33641] Length = 495 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I++ A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTMPTREITIDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238793021|ref|ZP_04636650.1| Transcription termination factor NusA [Yersinia intermedia ATCC 29909] gi|238727621|gb|EEQ19146.1| Transcription termination factor NusA [Yersinia intermedia ATCC 29909] Length = 495 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 314/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRQYLGEIVTGVVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATILVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|238760242|ref|ZP_04621387.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236] gi|238701565|gb|EEP94137.1| Transcription termination factor NusA [Yersinia aldovae ATCC 35236] Length = 495 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 313/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLDAAQYEDPTLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGIVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE A LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLAIDEDFATTLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL E Sbjct: 422 EESLGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W Sbjct: 473 --------LSDEQAGELIMAAR-NICWFGD 493 >gi|332188268|ref|ZP_08389995.1| transcription termination factor NusA [Sphingomonas sp. S17] gi|332011664|gb|EGI53742.1| transcription termination factor NusA [Sphingomonas sp. S17] Length = 538 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 283/531 (53%), Positives = 382/531 (71%), Gaps = 9/531 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ EL+ IA+AVA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P +GD+ Sbjct: 5 ISANKAELIAIANAVASEKMIDKGIVIEAMEDAIQRAARARYGAENDIRAKLDPNSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE+V++Y QI LK A IG + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVEQVDDYYKQIDLKGAEKLQKGAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKD+ GEII+G VKRVE+G+++VDLG ++GVIRRD+ I RE +R DR Sbjct: 125 VRDAERDRQYDEFKDRQGEIITGVVKRVEFGHIVVDLGRAEGVIRRDQQIPREVVRVNDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 IRSLILNVRRENRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+ Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLT IDI+TE + S RQK+F ++ Sbjct: 305 DEEEDRIEVVVPDDQLSLAIGRRGQNVRLASQLTAKAIDILTEADASEKRQKEFVANSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V++ E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELAAIEGFDEDLAQELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + R LGV + L +P + + V LG+ GIKT++DLA + D+L+ ++ Sbjct: 425 QAARDERRALGVEDALAEMPYLTEAMLVTLGKAGIKTLDDLADLATDELVEKKRSEPRRR 484 Query: 482 EKFD-------GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G L+ G +Q +I+ AR W E E +A Sbjct: 485 GDDAPRAAPKGGILAEYGLSDEQGNEIIMAARAH--WFTDEDEPVAEAGEA 533 >gi|51594831|ref|YP_069022.1| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 32953] gi|108806045|ref|YP_649961.1| transcription elongation factor NusA [Yersinia pestis Antiqua] gi|108813401|ref|YP_649168.1| transcription elongation factor NusA [Yersinia pestis Nepal516] gi|145600793|ref|YP_001164869.1| transcription elongation factor NusA [Yersinia pestis Pestoides F] gi|153947426|ref|YP_001402551.1| transcription elongation factor NusA [Yersinia pseudotuberculosis IP 31758] gi|153997274|ref|ZP_02022374.1| N utilization substance protein A [Yersinia pestis CA88-4125] gi|162418514|ref|YP_001608285.1| transcription elongation factor NusA [Yersinia pestis Angola] gi|165925730|ref|ZP_02221562.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. F1991016] gi|165936779|ref|ZP_02225346.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. IP275] gi|166010132|ref|ZP_02231030.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214620|ref|ZP_02240655.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401309|ref|ZP_02306809.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420758|ref|ZP_02312511.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423617|ref|ZP_02315370.1| transcription termination factor NusA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025946|ref|YP_001722451.1| transcription elongation factor NusA [Yersinia pseudotuberculosis YPIII] gi|186893840|ref|YP_001870952.1| transcription elongation factor NusA [Yersinia pseudotuberculosis PB1/+] gi|218930511|ref|YP_002348386.1| transcription elongation factor NusA [Yersinia pestis CO92] gi|229839149|ref|ZP_04459308.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896638|ref|ZP_04511805.1| transcription termination/antitermination L factor [Yersinia pestis Pestoides A] gi|229899713|ref|ZP_04514854.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. India 195] gi|229903875|ref|ZP_04518988.1| transcription termination/antitermination L factor [Yersinia pestis Nepal516] gi|270489135|ref|ZP_06206209.1| transcription termination factor NusA [Yersinia pestis KIM D27] gi|294505370|ref|YP_003569432.1| transcription elongation factor NusA [Yersinia pestis Z176003] gi|51588113|emb|CAH19719.1| N utilization substance protein A [Yersinia pseudotuberculosis IP 32953] gi|108777049|gb|ABG19568.1| N utilization substance protein A [Yersinia pestis Nepal516] gi|108777958|gb|ABG12016.1| N utilization substance protein A [Yersinia pestis Antiqua] gi|115349122|emb|CAL22085.1| N utilization substance protein A [Yersinia pestis CO92] gi|145212489|gb|ABP41896.1| N utilization substance protein A [Yersinia pestis Pestoides F] gi|149288911|gb|EDM38991.1| N utilization substance protein A [Yersinia pestis CA88-4125] gi|152958921|gb|ABS46382.1| transcription termination factor NusA [Yersinia pseudotuberculosis IP 31758] gi|162351329|gb|ABX85277.1| transcription termination factor NusA [Yersinia pestis Angola] gi|165915428|gb|EDR34038.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. IP275] gi|165922342|gb|EDR39519.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991039|gb|EDR43340.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204195|gb|EDR48675.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961564|gb|EDR57585.1| transcription termination factor NusA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049334|gb|EDR60742.1| transcription termination factor NusA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057787|gb|EDR67533.1| transcription termination factor NusA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752480|gb|ACA69998.1| NusA antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186696866|gb|ACC87495.1| NusA antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229679645|gb|EEO75748.1| transcription termination/antitermination L factor [Yersinia pestis Nepal516] gi|229687205|gb|EEO79280.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. India 195] gi|229695515|gb|EEO85562.1| transcription termination/antitermination L factor [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700416|gb|EEO88448.1| transcription termination/antitermination L factor [Yersinia pestis Pestoides A] gi|262363436|gb|ACY60157.1| transcription elongation factor NusA [Yersinia pestis D106004] gi|262367189|gb|ACY63746.1| transcription elongation factor NusA [Yersinia pestis D182038] gi|270337639|gb|EFA48416.1| transcription termination factor NusA [Yersinia pestis KIM D27] gi|294355829|gb|ADE66170.1| transcription elongation factor NusA [Yersinia pestis Z176003] gi|320013700|gb|ADV97271.1| transcription termination/antitermination L factor [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 495 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 198/510 (38%), Positives = 313/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +G+I++G VK+V ++ +DLG++ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 422 EESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 472 -------GLSDEQAGELIMAAR-NICWFGD 493 >gi|16124300|ref|NP_418864.1| transcription elongation factor NusA [Caulobacter crescentus CB15] gi|221232982|ref|YP_002515418.1| transcription elongation factor NusA [Caulobacter crescentus NA1000] gi|13421138|gb|AAK22032.1| N utilization substance protein A [Caulobacter crescentus CB15] gi|220962154|gb|ACL93510.1| N utilization substance protein A [Caulobacter crescentus NA1000] Length = 548 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 299/514 (58%), Positives = 391/514 (76%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ + Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64 Query: 62 LFRLLEVVEEVENYTCQI---SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV + +I +A+ +IG V + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPFSIAKRTWRDAEIGKVYEEVLPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDGSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFAER 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIASIEGFDEETA E+Q RARE+LE Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIASIEGFDEETAEELQTRAREFLE 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + LGV +EL +I G+ + VALGE +K++EDLAG DD+ GW ENKG Sbjct: 425 KEAAELDAKRKALGVEDELLTIEGVTLAMAVALGEGDVKSIEDLAGLVPDDMRGWFENKG 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L S + E++I+ AR MGW+ Sbjct: 485 GERVREPGILESFNLSPEDAEALIMRARIAMGWV 518 >gi|167644004|ref|YP_001681667.1| transcription elongation factor NusA [Caulobacter sp. K31] gi|167346434|gb|ABZ69169.1| NusA antitermination factor [Caulobacter sp. K31] Length = 568 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 294/514 (57%), Positives = 384/514 (74%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+ +TG+ + Sbjct: 5 ISANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDTKTGETT 64 Query: 62 LFRLLEVVEEVENYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV + +I L A+ ++G + + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVPDDFELEGEIGKVQLSSAKRTWRDAEVGKIYEESLPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+ GEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRAGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQK F E Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQKQFTET 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFD+ETA E+Q RARE+L+ Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFATVEDVAYVEPHEIAAIEGFDDETADELQTRAREFLD 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K ELGV + L I G+ + VALGE +K++EDLAG DDL GW E K Sbjct: 425 KEAAALDAKRVELGVEDGLLEIEGVTLPVAVALGEGDVKSVEDLAGLIPDDLRGWFETKD 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L S + E++I+ AR MGW+ Sbjct: 485 GERTREAGILDSFNLSPEDAEALIMRARVVMGWV 518 >gi|22124601|ref|NP_668024.1| transcription elongation factor NusA [Yersinia pestis KIM 10] gi|45440440|ref|NP_991979.1| transcription elongation factor NusA [Yersinia pestis biovar Microtus str. 91001] gi|21957405|gb|AAM84275.1|AE013671_2 transcription pausing L factor [Yersinia pestis KIM 10] gi|45435297|gb|AAS60856.1| N utilization substance protein A [Yersinia pestis biovar Microtus str. 91001] Length = 501 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 198/514 (38%), Positives = 314/514 (61%), Gaps = 19/514 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD Sbjct: 4 ATRMNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFD 63 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 FR V+EV T +I+L A+ DPS+ +G V D + + F R+ Q+AKQVI+QK Sbjct: 64 TFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESVTFDRITTQTAKQVIVQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER +F+ +G+I++G VK+V ++ +DLG++ + VI R++ + REN RPGD Sbjct: 124 VREAERAMVVEQFRQYLGQIVTGIVKKVSRDSIALDLGHNAEAVIGREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ +YDVR E RG Q+ +SR+ + +V+LF +EVPEI ++++KA +RDPGSRAK+A Sbjct: 184 RIRGVLYDVRPEARGAQLFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++V V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + Sbjct: 304 VDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQAEAHAAID 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L + Sbjct: 364 TFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRDRAKAALTTL 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + +++L ++ G++ + L G+ T+EDLA +DDL Sbjct: 424 ALAQEESFGDQKPADDLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIE------ 477 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 478 -----------GLSDEQAGELIMAAR-NICWFGD 499 >gi|170765858|ref|ZP_02900669.1| transcription termination/antitermination factor NusA [Escherichia albertii TW07627] gi|170125004|gb|EDS93935.1| transcription termination/antitermination factor NusA [Escherichia albertii TW07627] Length = 495 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGMDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|87200505|ref|YP_497762.1| transcription elongation factor NusA [Novosphingobium aromaticivorans DSM 12444] gi|87136186|gb|ABD26928.1| NusA antitermination factor [Novosphingobium aromaticivorans DSM 12444] Length = 544 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 290/540 (53%), Positives = 387/540 (71%), Gaps = 17/540 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD+ Sbjct: 5 ISANRAELLAIANAVATEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEVVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERDRQYDEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R+ RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILKVERQNRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++ Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGF ++EE+A ++++E+A+IEGFDEE A E+Q RA E +E + Sbjct: 365 FEEELDVDETLSQLLVAEGFTELEEVAYIEMAELAAIEGFDEELAEELQSRASEAIERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS------- 474 L+++ R LGV + L +P + + VALG+ GIKT++DLA + D+L+ Sbjct: 425 EALREQRRALGVDDALAELPHLTEAMLVALGKAGIKTLDDLADLATDELIAKKRAEQRRR 484 Query: 475 --------ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 + E G L G ++Q +I+ AR W E E VA+E S Sbjct: 485 NDKGPRERTERSERTEDKGGVLGEFGLSEEQGNEIIMAARAH--WFEDEPVAEEAADADS 542 >gi|254295403|ref|YP_003061426.1| NusA antitermination factor [Hirschia baltica ATCC 49814] gi|254043934|gb|ACT60729.1| NusA antitermination factor [Hirschia baltica ATCC 49814] Length = 572 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 287/511 (56%), Positives = 381/511 (74%), Gaps = 1/511 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSAN+LE+L IA+ +A EK ID+ +VL MA++IQKAARS YG DI V I+P++G+ + Sbjct: 6 VSANKLEILAIANILAAEKQIDKMIVLEAMAEAIQKAARSRYGQEHDIHVHIDPKSGETT 65 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + R+ VVEEVE+ +SL+ AR+ DP+ +IG + LPP +FGRVA Q+AKQVI K Sbjct: 66 ITRVQTVVEEVEDPAHHLSLEEAREIDPNAEIGTEFKEILPPFEFGRVAAQTAKQVITGK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AERDRQY EFKDK G+II+G VKRVE+GN+IVDLG +G+IRR++ + RENL PGDR Sbjct: 126 VRDAERDRQYEEFKDKEGQIINGIVKRVEHGNIIVDLGRGEGIIRRNDGLPRENLNPGDR 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ +Y V RE +GPQ+ LSR HP FMV LF EVPE+Y G++++KA SRDPGSRAK+ V Sbjct: 186 VRAILYKVSREPKGPQLFLSRAHPTFMVALFSQEVPEVYEGVIEIKACSRDPGSRAKIGV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+S+DPVGACVGMRG+RVQAVV+EL+ EKIDI+ WS D ATF++NAL+PA V+KVV+ Sbjct: 246 LSHDASVDPVGACVGMRGARVQAVVSELQGEKIDIIPWSEDEATFIVNALQPAEVSKVVV 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED R+EV+V + Q LAIGRRGQNVRLASQLTGW ID+ TE +DS RQK+F ER+ Sbjct: 306 DEDEERVEVVVEESQFPLAIGRRGQNVRLASQLTGWQIDLTTEAQDSERRQKEFQERSGL 365 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+A++ DE++A LL +EGF ++EE+A V + + ASI+GFDE A E+Q RAREYLE + Sbjct: 366 FMRALDADEMLAQLLASEGFENIEEIAYVDLEDFASIDGFDEAVASELQTRAREYLELLA 425 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK-GGN 480 + KK ++LGV++E+ + G+ + V G++GIKT++DLAG DDL+GW E G Sbjct: 426 AAMDKKRKDLGVTDEVAFMDGVTPVMAVRFGDDGIKTIDDLAGLVPDDLIGWKEPDAKGK 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 G L+ +D E I+ AR GW Sbjct: 486 SRWQPGLLAKGEMTRDAAELFILRARVLAGW 516 >gi|317493625|ref|ZP_07952046.1| transcription termination factor NusA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918568|gb|EFV39906.1| transcription termination factor NusA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 495 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVDEVTQPTREITLDAAQFEDPALQLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHQGEIVTGVVKKVSRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ +I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATLLVEEGFSTLEELAYVPEQELLAIDGLDEDTVDALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G+D I + G+ T+EDLA +DDL Sbjct: 422 EESLGDQKPAEDLLALEGLDRGIAFKMAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +I+ AR + W + Sbjct: 472 -------GLNSEKAGELIMAAR-NICWFGDSE 495 >gi|238755155|ref|ZP_04616501.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473] gi|238706602|gb|EEP98973.1| Transcription termination factor NusA [Yersinia ruckeri ATCC 29473] Length = 495 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 201/510 (39%), Positives = 314/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPS +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTMPTREITLEAAQFEDPSTQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +GEI++GTVK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVEQFRQYLGEIVTGTVKKVNRDSIALDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRSEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 RHTMDVAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTADDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L + + Sbjct: 362 HLDIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEDMVEALRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ + L G+ T+EDLA +DDL E Sbjct: 422 EESLGDQKPADDLLNLEGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W Sbjct: 473 --------LSDEQAGELIMAAR-NICWFGD 493 >gi|156935695|ref|YP_001439611.1| transcription elongation factor NusA [Cronobacter sakazakii ATCC BAA-894] gi|156533949|gb|ABU78775.1| hypothetical protein ESA_03562 [Cronobacter sakazakii ATCC BAA-894] Length = 495 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTREITLEAARYEDPSLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T++DLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NIRWFSDE 494 >gi|269137762|ref|YP_003294462.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|267983422|gb|ACY83251.1| transcription elongation factor [Edwardsiella tarda EIB202] gi|304557819|gb|ADM40483.1| Transcription termination protein NusA [Edwardsiella tarda FL6-60] Length = 495 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 316/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ SI+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATLLVEEGFSTLEELAYVPERELLSIDGLDEETVEALRTRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W + Sbjct: 472 -------GLNNEQAGELIMAAR-NICWFGDSE 495 >gi|218550454|ref|YP_002384245.1| transcription elongation factor NusA [Escherichia fergusonii ATCC 35469] gi|218357995|emb|CAQ90641.1| transcription termination/antitermination L factor [Escherichia fergusonii ATCC 35469] gi|323966351|gb|EGB61785.1| transcription termination protein NusA [Escherichia coli M863] gi|324115225|gb|EGC09189.1| transcription termination protein NusA [Escherichia fergusonii B253] gi|325498752|gb|EGC96611.1| transcription elongation factor NusA [Escherichia fergusonii ECD227] gi|327255185|gb|EGE66785.1| transcription elongation protein nusA [Escherichia coli STEC_7v] Length = 495 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|103486103|ref|YP_615664.1| transcription elongation factor NusA [Sphingopyxis alaskensis RB2256] gi|98976180|gb|ABF52331.1| NusA antitermination factor [Sphingopyxis alaskensis RB2256] Length = 548 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 284/532 (53%), Positives = 382/532 (71%), Gaps = 9/532 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ + ++IQ+AAR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAIEEAIQRAARARYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ L + IG + DPLP +D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVETVEDYFKQVDLAAGQKLQKDARIGDFIVDPLPAVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREA+R+RQY EFKD+ GEII+G VK VE+G+++V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VREADRERQYQEFKDRAGEIITGVVKSVEFGHIVVNLGRAEGVIRRDQQIPRELMRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I VR E RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILSVRSETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISYDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVQRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQ++F ER+ Sbjct: 305 DEDDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKQIDIMTEADASEKRQREFVERSTM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE +A LLVAEGF+++EE+A V + E+ASIEGFDEE A E+Q RA E LE + Sbjct: 365 FQEELDVDETLAQLLVAEGFSELEEVAYVPLDELASIEGFDEELAQELQSRAAEGLERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN----- 476 + + RELGV + L IP + + V LG+ GI+T++DLA + D+L+ Sbjct: 425 EAARAERRELGVEDALADIPHLTEAMLVTLGKAGIRTLDDLADLATDELIAKKRTDNRRG 484 Query: 477 --KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 + E G L G ++Q +I+ AR W + E+ ++ A+ Sbjct: 485 PARSERAEDKGGVLGEYGLSEEQGNEIIMAARAH--WFDDEESSEPATAPAA 534 >gi|15803711|ref|NP_289745.1| transcription elongation factor NusA [Escherichia coli O157:H7 EDL933] gi|15833304|ref|NP_312077.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. Sakai] gi|16131061|ref|NP_417638.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. MG1655] gi|24114460|ref|NP_708970.1| transcription elongation factor NusA [Shigella flexneri 2a str. 301] gi|26249753|ref|NP_755793.1| transcription elongation factor NusA [Escherichia coli CFT073] gi|30064509|ref|NP_838680.1| transcription elongation factor NusA [Shigella flexneri 2a str. 2457T] gi|74313706|ref|YP_312125.1| transcription elongation factor NusA [Shigella sonnei Ss046] gi|89109934|ref|AP_003714.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. W3110] gi|91212591|ref|YP_542577.1| transcription elongation factor NusA [Escherichia coli UTI89] gi|117625465|ref|YP_858788.1| transcription elongation factor NusA [Escherichia coli APEC O1] gi|157155683|ref|YP_001464646.1| transcription elongation factor NusA [Escherichia coli E24377A] gi|157162654|ref|YP_001459972.1| transcription elongation factor NusA [Escherichia coli HS] gi|168762136|ref|ZP_02787143.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4501] gi|168786054|ref|ZP_02811061.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC869] gi|168797770|ref|ZP_02822777.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC508] gi|170018579|ref|YP_001723533.1| transcription elongation factor NusA [Escherichia coli ATCC 8739] gi|170082706|ref|YP_001732026.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. DH10B] gi|188492867|ref|ZP_03000137.1| transcription termination/antitermination factor NusA [Escherichia coli 53638] gi|191172236|ref|ZP_03033779.1| transcription termination/antitermination factor NusA [Escherichia coli F11] gi|193062170|ref|ZP_03043266.1| transcription termination/antitermination factor NusA [Escherichia coli E22] gi|194433789|ref|ZP_03066064.1| transcription termination/antitermination factor NusA [Shigella dysenteriae 1012] gi|215488487|ref|YP_002330918.1| transcription elongation factor NusA [Escherichia coli O127:H6 str. E2348/69] gi|217326723|ref|ZP_03442806.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. TW14588] gi|218555741|ref|YP_002388654.1| transcription elongation factor NusA [Escherichia coli IAI1] gi|218560241|ref|YP_002393154.1| transcription elongation factor NusA [Escherichia coli S88] gi|218691461|ref|YP_002399673.1| transcription elongation factor NusA [Escherichia coli ED1a] gi|218696876|ref|YP_002404543.1| transcription elongation factor NusA [Escherichia coli 55989] gi|227887892|ref|ZP_04005697.1| N utilization substance A [Escherichia coli 83972] gi|237706078|ref|ZP_04536559.1| transcription termination/antitermination factor NusA [Escherichia sp. 3_2_53FAA] gi|238902273|ref|YP_002928069.1| transcription termination/antitermination L factor [Escherichia coli BW2952] gi|253771995|ref|YP_003034826.1| transcription elongation factor NusA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038335|ref|ZP_04872393.1| transcription termination/antitermination factor NusA [Escherichia sp. 1_1_43] gi|254163113|ref|YP_003046221.1| transcription elongation factor NusA [Escherichia coli B str. REL606] gi|256018911|ref|ZP_05432776.1| transcription elongation factor NusA [Shigella sp. D9] gi|256024255|ref|ZP_05438120.1| transcription elongation factor NusA [Escherichia sp. 4_1_40B] gi|260845984|ref|YP_003223762.1| transcription termination/antitermination L factor NusA [Escherichia coli O103:H2 str. 12009] gi|261228181|ref|ZP_05942462.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. FRIK2000] gi|261255037|ref|ZP_05947570.1| transcription termination/antitermination L factor NusA [Escherichia coli O157:H7 str. FRIK966] gi|291284545|ref|YP_003501363.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str. CB9615] gi|293416602|ref|ZP_06659241.1| transcription elongation protein nusA [Escherichia coli B185] gi|293449505|ref|ZP_06663926.1| transcription elongation protein nusA [Escherichia coli B088] gi|300817579|ref|ZP_07097795.1| transcription termination factor NusA [Escherichia coli MS 107-1] gi|300823868|ref|ZP_07103992.1| transcription termination factor NusA [Escherichia coli MS 119-7] gi|300904355|ref|ZP_07122208.1| transcription termination factor NusA [Escherichia coli MS 84-1] gi|300918924|ref|ZP_07135483.1| transcription termination factor NusA [Escherichia coli MS 115-1] gi|300926092|ref|ZP_07141910.1| transcription termination factor NusA [Escherichia coli MS 182-1] gi|300929859|ref|ZP_07145305.1| transcription termination factor NusA [Escherichia coli MS 187-1] gi|300948819|ref|ZP_07162887.1| transcription termination factor NusA [Escherichia coli MS 116-1] gi|300955755|ref|ZP_07168100.1| transcription termination factor NusA [Escherichia coli MS 175-1] gi|300977836|ref|ZP_07174076.1| transcription termination factor NusA [Escherichia coli MS 200-1] gi|300990769|ref|ZP_07179341.1| transcription termination factor NusA [Escherichia coli MS 45-1] gi|301025986|ref|ZP_07189468.1| transcription termination factor NusA [Escherichia coli MS 196-1] gi|301047988|ref|ZP_07195030.1| transcription termination factor NusA [Escherichia coli MS 185-1] gi|301301775|ref|ZP_07207909.1| transcription termination factor NusA [Escherichia coli MS 124-1] gi|301326408|ref|ZP_07219762.1| transcription termination factor NusA [Escherichia coli MS 78-1] gi|301644880|ref|ZP_07244852.1| transcription termination factor NusA [Escherichia coli MS 146-1] gi|306816487|ref|ZP_07450619.1| transcription elongation factor NusA [Escherichia coli NC101] gi|307139856|ref|ZP_07499212.1| transcription elongation factor NusA [Escherichia coli H736] gi|307313124|ref|ZP_07592750.1| transcription termination factor NusA [Escherichia coli W] gi|312968492|ref|ZP_07782701.1| transcription elongation protein nusA [Escherichia coli 2362-75] gi|331643869|ref|ZP_08345000.1| L factor [Escherichia coli H736] gi|331648970|ref|ZP_08350058.1| L factor [Escherichia coli M605] gi|331654775|ref|ZP_08355775.1| L factor [Escherichia coli M718] gi|331659458|ref|ZP_08360400.1| L factor [Escherichia coli TA206] gi|331669998|ref|ZP_08370843.1| L factor [Escherichia coli TA271] gi|331674707|ref|ZP_08375466.1| L factor [Escherichia coli TA280] gi|331679250|ref|ZP_08379922.1| L factor [Escherichia coli H591] gi|331684818|ref|ZP_08385410.1| L factor [Escherichia coli H299] gi|332280000|ref|ZP_08392413.1| transcription pausing [Shigella sp. D9] gi|84028773|sp|P0AFF8|NUSA_ECO57 RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028774|sp|P0AFF7|NUSA_ECOL6 RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028775|sp|P0AFF6|NUSA_ECOLI RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|84028776|sp|P0AFF9|NUSA_SHIFL RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|12517780|gb|AAG58305.1|AE005545_7 transcription pausing; L factor [Escherichia coli O157:H7 str. EDL933] gi|26110181|gb|AAN82367.1|AE016767_127 N utilization substance protein A [Escherichia coli CFT073] gi|606109|gb|AAA57972.1| L factor [Escherichia coli str. K-12 substr. MG1655] gi|1789560|gb|AAC76203.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. MG1655] gi|13363523|dbj|BAB37473.1| transcription termination-antitermination factor NusA [Escherichia coli O157:H7 str. Sakai] gi|24053641|gb|AAN44677.1| transcription pausing; L factor [Shigella flexneri 2a str. 301] gi|30042768|gb|AAP18491.1| transcription pausing; L factor [Shigella flexneri 2a str. 2457T] gi|73857183|gb|AAZ89890.1| transcription pausing; L factor [Shigella sonnei Ss046] gi|85675965|dbj|BAE77215.1| transcription termination/antitermination L factor [Escherichia coli str. K12 substr. W3110] gi|91074165|gb|ABE09046.1| transcription pausing; L factor [Escherichia coli UTI89] gi|115514589|gb|ABJ02664.1| transcription elongation factor NusA [Escherichia coli APEC O1] gi|157068334|gb|ABV07589.1| transcription termination/antitermination factor NusA [Escherichia coli HS] gi|157077713|gb|ABV17421.1| transcription termination/antitermination factor NusA [Escherichia coli E24377A] gi|169753507|gb|ACA76206.1| NusA antitermination factor [Escherichia coli ATCC 8739] gi|169890541|gb|ACB04248.1| transcription termination/antitermination L factor [Escherichia coli str. K-12 substr. DH10B] gi|188488066|gb|EDU63169.1| transcription termination/antitermination factor NusA [Escherichia coli 53638] gi|189367615|gb|EDU86031.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4501] gi|189374081|gb|EDU92497.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC869] gi|189379809|gb|EDU98225.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC508] gi|190907546|gb|EDV67142.1| transcription termination/antitermination factor NusA [Escherichia coli F11] gi|192932390|gb|EDV84988.1| transcription termination/antitermination factor NusA [Escherichia coli E22] gi|194418052|gb|EDX34146.1| transcription termination/antitermination factor NusA [Shigella dysenteriae 1012] gi|209758328|gb|ACI77476.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758330|gb|ACI77477.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758332|gb|ACI77478.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|209758334|gb|ACI77479.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|215266559|emb|CAS10998.1| transcription termination/antitermination L factor [Escherichia coli O127:H6 str. E2348/69] gi|217319090|gb|EEC27515.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. TW14588] gi|218353608|emb|CAU99800.1| transcription termination/antitermination L factor [Escherichia coli 55989] gi|218362509|emb|CAR00133.1| transcription termination/antitermination L factor [Escherichia coli IAI1] gi|218367010|emb|CAR04781.1| transcription termination/antitermination L factor [Escherichia coli S88] gi|218429025|emb|CAR09972.2| transcription termination/antitermination L factor [Escherichia coli ED1a] gi|222034888|emb|CAP77631.1| Transcription elongation protein nusA [Escherichia coli LF82] gi|226839959|gb|EEH71980.1| transcription termination/antitermination factor NusA [Escherichia sp. 1_1_43] gi|226899118|gb|EEH85377.1| transcription termination/antitermination factor NusA [Escherichia sp. 3_2_53FAA] gi|227835288|gb|EEJ45754.1| N utilization substance A [Escherichia coli 83972] gi|238863681|gb|ACR65679.1| transcription termination/antitermination L factor [Escherichia coli BW2952] gi|242378714|emb|CAQ33504.1| transcription termination/antitermination L factor [Escherichia coli BL21(DE3)] gi|253323039|gb|ACT27641.1| NusA antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975014|gb|ACT40685.1| transcription elongation factor NusA [Escherichia coli B str. REL606] gi|253979170|gb|ACT44840.1| transcription elongation factor NusA [Escherichia coli BL21(DE3)] gi|257761131|dbj|BAI32628.1| transcription termination/antitermination L factor NusA [Escherichia coli O103:H2 str. 12009] gi|260447802|gb|ACX38224.1| NusA antitermination factor [Escherichia coli DH1] gi|281180213|dbj|BAI56543.1| N utilization substance protein A [Escherichia coli SE15] gi|281602553|gb|ADA75537.1| Transcription elongation protein nusA [Shigella flexneri 2002017] gi|290764418|gb|ADD58379.1| Transcription elongation protein nusA [Escherichia coli O55:H7 str. CB9615] gi|291322595|gb|EFE62024.1| transcription elongation protein nusA [Escherichia coli B088] gi|291431958|gb|EFF04941.1| transcription elongation protein nusA [Escherichia coli B185] gi|294490229|gb|ADE88985.1| transcription termination/antitermination factor NusA [Escherichia coli IHE3034] gi|299879881|gb|EFI88092.1| transcription termination factor NusA [Escherichia coli MS 196-1] gi|300300131|gb|EFJ56516.1| transcription termination factor NusA [Escherichia coli MS 185-1] gi|300308213|gb|EFJ62733.1| transcription termination factor NusA [Escherichia coli MS 200-1] gi|300317388|gb|EFJ67172.1| transcription termination factor NusA [Escherichia coli MS 175-1] gi|300403706|gb|EFJ87244.1| transcription termination factor NusA [Escherichia coli MS 84-1] gi|300407077|gb|EFJ90615.1| transcription termination factor NusA [Escherichia coli MS 45-1] gi|300413950|gb|EFJ97260.1| transcription termination factor NusA [Escherichia coli MS 115-1] gi|300417857|gb|EFK01168.1| transcription termination factor NusA [Escherichia coli MS 182-1] gi|300451708|gb|EFK15328.1| transcription termination factor NusA [Escherichia coli MS 116-1] gi|300462221|gb|EFK25714.1| transcription termination factor NusA [Escherichia coli MS 187-1] gi|300523636|gb|EFK44705.1| transcription termination factor NusA [Escherichia coli MS 119-7] gi|300529877|gb|EFK50939.1| transcription termination factor NusA [Escherichia coli MS 107-1] gi|300842756|gb|EFK70516.1| transcription termination factor NusA [Escherichia coli MS 124-1] gi|300846897|gb|EFK74657.1| transcription termination factor NusA [Escherichia coli MS 78-1] gi|301076825|gb|EFK91631.1| transcription termination factor NusA [Escherichia coli MS 146-1] gi|305850052|gb|EFM50511.1| transcription elongation factor NusA [Escherichia coli NC101] gi|306907035|gb|EFN37543.1| transcription termination factor NusA [Escherichia coli W] gi|307555265|gb|ADN48040.1| transcription pausing [Escherichia coli ABU 83972] gi|307625230|gb|ADN69534.1| transcription elongation factor NusA [Escherichia coli UM146] gi|309703597|emb|CBJ02937.1| transcription elongation protein [Escherichia coli ETEC H10407] gi|312286710|gb|EFR14621.1| transcription elongation protein nusA [Escherichia coli 2362-75] gi|312947728|gb|ADR28555.1| transcription elongation factor NusA [Escherichia coli O83:H1 str. NRG 857C] gi|313648589|gb|EFS13031.1| transcription elongation protein nusA [Shigella flexneri 2a str. 2457T] gi|315062477|gb|ADT76804.1| transcription termination/antitermination L factor [Escherichia coli W] gi|315137757|dbj|BAJ44916.1| transcription elongation protein nusA [Escherichia coli DH1] gi|315257095|gb|EFU37063.1| transcription termination factor NusA [Escherichia coli MS 85-1] gi|315297879|gb|EFU57149.1| transcription termination factor NusA [Escherichia coli MS 16-3] gi|315617252|gb|EFU97861.1| transcription elongation protein nusA [Escherichia coli 3431] gi|320181445|gb|EFW56363.1| Transcription termination protein NusA [Shigella boydii ATCC 9905] gi|320189523|gb|EFW64182.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. EC1212] gi|320194655|gb|EFW69285.1| Transcription termination protein NusA [Escherichia coli WV_060327] gi|320202083|gb|EFW76658.1| Transcription termination protein NusA [Escherichia coli EC4100B] gi|320640241|gb|EFX09813.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. G5101] gi|320645538|gb|EFX14547.1| transcription elongation factor NusA [Escherichia coli O157:H- str. 493-89] gi|320650848|gb|EFX19305.1| transcription elongation factor NusA [Escherichia coli O157:H- str. H 2687] gi|320656229|gb|EFX24141.1| transcription elongation factor NusA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661919|gb|EFX29327.1| transcription elongation factor NusA [Escherichia coli O55:H7 str. USDA 5905] gi|320666754|gb|EFX33733.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. LSU-61] gi|323162863|gb|EFZ48698.1| transcription elongation protein nusA [Escherichia coli E128010] gi|323165127|gb|EFZ50917.1| transcription elongation protein nusA [Shigella sonnei 53G] gi|323189208|gb|EFZ74492.1| transcription elongation protein nusA [Escherichia coli RN587/1] gi|323376935|gb|ADX49203.1| NusA antitermination factor [Escherichia coli KO11] gi|323936135|gb|EGB32429.1| transcription termination protein NusA [Escherichia coli E1520] gi|323941729|gb|EGB37908.1| transcription termination protein NusA [Escherichia coli E482] gi|323946975|gb|EGB42991.1| transcription termination protein NusA [Escherichia coli H120] gi|323951311|gb|EGB47186.1| transcription termination protein NusA [Escherichia coli H252] gi|323957682|gb|EGB53396.1| transcription termination protein NusA [Escherichia coli H263] gi|323961059|gb|EGB56674.1| transcription termination protein NusA [Escherichia coli H489] gi|323970266|gb|EGB65537.1| transcription termination protein NusA [Escherichia coli TA007] gi|324012105|gb|EGB81324.1| transcription termination factor NusA [Escherichia coli MS 60-1] gi|324119536|gb|EGC13418.1| transcription termination protein NusA [Escherichia coli E1167] gi|326337871|gb|EGD61705.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. 1125] gi|326347440|gb|EGD71165.1| Transcription termination protein NusA [Escherichia coli O157:H7 str. 1044] gi|330909225|gb|EGH37739.1| transcription termination protein NusA [Escherichia coli AA86] gi|331037340|gb|EGI09564.1| L factor [Escherichia coli H736] gi|331042717|gb|EGI14859.1| L factor [Escherichia coli M605] gi|331048157|gb|EGI20234.1| L factor [Escherichia coli M718] gi|331054040|gb|EGI26069.1| L factor [Escherichia coli TA206] gi|331062911|gb|EGI34825.1| L factor [Escherichia coli TA271] gi|331068146|gb|EGI39542.1| L factor [Escherichia coli TA280] gi|331073315|gb|EGI44638.1| L factor [Escherichia coli H591] gi|331078433|gb|EGI49639.1| L factor [Escherichia coli H299] gi|332086099|gb|EGI91261.1| transcription elongation protein nusA [Shigella boydii 5216-82] gi|332086431|gb|EGI91578.1| transcription elongation protein nusA [Shigella dysenteriae 155-74] gi|332102352|gb|EGJ05698.1| transcription pausing [Shigella sp. D9] gi|332345126|gb|AEE58460.1| transcription elongation protein NusA [Escherichia coli UMNK88] gi|332752329|gb|EGJ82719.1| transcription elongation protein nusA [Shigella flexneri 4343-70] gi|332752856|gb|EGJ83241.1| transcription elongation protein nusA [Shigella flexneri K-671] gi|332754694|gb|EGJ85060.1| transcription elongation protein nusA [Shigella flexneri 2747-71] gi|332765166|gb|EGJ95393.1| transcription termination/antitermination L factor [Shigella flexneri 2930-71] gi|332998811|gb|EGK18407.1| transcription elongation protein nusA [Shigella flexneri VA-6] gi|332999248|gb|EGK18834.1| transcription elongation protein nusA [Shigella flexneri K-272] gi|333014625|gb|EGK33972.1| transcription elongation protein nusA [Shigella flexneri K-304] gi|333014970|gb|EGK34314.1| transcription elongation protein nusA [Shigella flexneri K-227] Length = 495 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|170680571|ref|YP_001745443.1| transcription elongation factor NusA [Escherichia coli SMS-3-5] gi|191168053|ref|ZP_03029853.1| transcription termination/antitermination factor NusA [Escherichia coli B7A] gi|193067419|ref|ZP_03048387.1| transcription termination/antitermination factor NusA [Escherichia coli E110019] gi|209920646|ref|YP_002294730.1| transcription elongation factor NusA [Escherichia coli SE11] gi|218701940|ref|YP_002409569.1| transcription elongation factor NusA [Escherichia coli IAI39] gi|218706791|ref|YP_002414310.1| transcription elongation factor NusA [Escherichia coli UMN026] gi|260857298|ref|YP_003231189.1| transcription termination/antitermination L factor NusA [Escherichia coli O26:H11 str. 11368] gi|260869921|ref|YP_003236323.1| transcription termination/antitermination L factor NusA [Escherichia coli O111:H- str. 11128] gi|293406780|ref|ZP_06650706.1| nusA [Escherichia coli FVEC1412] gi|293412544|ref|ZP_06655267.1| nusA [Escherichia coli B354] gi|298382521|ref|ZP_06992118.1| N utilization substance protein A [Escherichia coli FVEC1302] gi|300897933|ref|ZP_07116312.1| transcription termination factor NusA [Escherichia coli MS 198-1] gi|300938079|ref|ZP_07152857.1| transcription termination factor NusA [Escherichia coli MS 21-1] gi|301022024|ref|ZP_07185967.1| transcription termination factor NusA [Escherichia coli MS 69-1] gi|309793747|ref|ZP_07688173.1| transcription termination factor NusA [Escherichia coli MS 145-7] gi|331664783|ref|ZP_08365688.1| L factor [Escherichia coli TA143] gi|170518289|gb|ACB16467.1| transcription termination/antitermination factor NusA [Escherichia coli SMS-3-5] gi|190901922|gb|EDV61671.1| transcription termination/antitermination factor NusA [Escherichia coli B7A] gi|192959376|gb|EDV89811.1| transcription termination/antitermination factor NusA [Escherichia coli E110019] gi|209913905|dbj|BAG78979.1| N utilization substance protein A [Escherichia coli SE11] gi|218371926|emb|CAR19782.1| transcription termination/antitermination L factor [Escherichia coli IAI39] gi|218433888|emb|CAR14805.1| transcription termination/antitermination L factor [Escherichia coli UMN026] gi|257755947|dbj|BAI27449.1| transcription termination/antitermination L factor NusA [Escherichia coli O26:H11 str. 11368] gi|257766277|dbj|BAI37772.1| transcription termination/antitermination L factor NusA [Escherichia coli O111:H- str. 11128] gi|284923193|emb|CBG36287.1| transcription elongation protein [Escherichia coli 042] gi|291426786|gb|EFE99818.1| nusA [Escherichia coli FVEC1412] gi|291469315|gb|EFF11806.1| nusA [Escherichia coli B354] gi|298277661|gb|EFI19177.1| N utilization substance protein A [Escherichia coli FVEC1302] gi|300358363|gb|EFJ74233.1| transcription termination factor NusA [Escherichia coli MS 198-1] gi|300397739|gb|EFJ81277.1| transcription termination factor NusA [Escherichia coli MS 69-1] gi|300456939|gb|EFK20432.1| transcription termination factor NusA [Escherichia coli MS 21-1] gi|308122704|gb|EFO59966.1| transcription termination factor NusA [Escherichia coli MS 145-7] gi|323154383|gb|EFZ40584.1| transcription elongation protein nusA [Escherichia coli EPECa14] gi|323178882|gb|EFZ64458.1| transcription elongation protein nusA [Escherichia coli 1180] gi|323183124|gb|EFZ68522.1| transcription elongation protein nusA [Escherichia coli 1357] gi|324008768|gb|EGB77987.1| transcription termination factor NusA [Escherichia coli MS 57-2] gi|324018307|gb|EGB87526.1| transcription termination factor NusA [Escherichia coli MS 117-3] gi|331058031|gb|EGI30013.1| L factor [Escherichia coli TA143] Length = 495 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|296114401|ref|ZP_06833055.1| transcription elongation factor NusA [Gluconacetobacter hansenii ATCC 23769] gi|295979162|gb|EFG85886.1| transcription elongation factor NusA [Gluconacetobacter hansenii ATCC 23769] Length = 516 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 287/524 (54%), Positives = 376/524 (71%), Gaps = 16/524 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFRPEIQLGEHLIDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY +FKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYNDFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA V+KVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVSKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSNQ 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAFADADELAGIEGFDEDVASELVRRAEGFLARRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + +K R LGVS+++ ++ ++ V LGE G+KT++DLA + D+L+ Sbjct: 423 EEMDEKRRALGVSDDIAALGVFTVQMLVTLGEKGVKTLDDLADLAGDELVDI-------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 L ++ +I+ AR W E ++ +E + Sbjct: 475 ------LGGDAIDEEAANEIIMAARAH--WFEGDESGADEAPEQ 510 >gi|56460077|ref|YP_155358.1| transcription elongation factor NusA [Idiomarina loihiensis L2TR] gi|56179087|gb|AAV81809.1| Transcription elongation factor NusA [Idiomarina loihiensis L2TR] Length = 499 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 205/514 (39%), Positives = 324/514 (63%), Gaps = 23/514 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y ++R++I+ TG+ FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIEVRIDIDRTTGEFDTFRRWL 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +E+ +ISL A+ DPS+ G V + + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTDSGLEHPYREISLSAAQYEDPSVQAGDYVEEQIDSIQFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + E++++VGE++SG VKR +VI+DLGN+ + +I RDE + RE++RPGDR+ Sbjct: 124 EAERAQVVDEYREQVGEMVSGIVKRANREHVILDLGNNAEAIIYRDEMLPRESVRPGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +YDVR E RG Q+ +SRT+P F+++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 184 RGLLYDVRPEARGAQLFVSRTNPNFLLELFRIEVPEIGEEMIELRGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQYVINAMAPAEVASIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIG+ GQNVRLASQLTGWT++++TE+E + + + F Sbjct: 304 EDAHTMDIAVAADNLAQAIGKGGQNVRLASQLTGWTLNVMTEDEFNEKNEAETQRLLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A++LV EGF+ +EE+A V ++E IEG DE+ E++ RAR YL + Sbjct: 364 VSTLDIDEDFANVLVDEGFSSLEEVAYVPVAEFLDIEGMDEDIVEELRSRARAYLTTKAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + + L ++ G++ + L G+ T+E+LA VDDL E Sbjct: 424 ATEESLESAEPDDTLLNLEGMERHLAYVLASKGVTTLEELAEQGVDDLADIEE------- 476 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + Q +I+ AR + W +E+ Sbjct: 477 ----------LNEQQAGDLIMKAR-NICWFNEEQ 499 >gi|238918423|ref|YP_002931937.1| transcription elongation factor NusA [Edwardsiella ictaluri 93-146] gi|238867991|gb|ACR67702.1| transcription elongation factor NusA, putative [Edwardsiella ictaluri 93-146] Length = 495 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 316/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L AR DP++D+G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTQPTREITLDAARFEDPALDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ SI+G DE+T ++ RA+ L + + Sbjct: 362 HLDIDEEFATLLVEEGFSSLEELAYVPERELLSIDGLDEDTVEVLRTRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W + Sbjct: 472 -------GLNNEQAGELIMAAR-NICWFGDSE 495 >gi|323979112|gb|EGB74190.1| transcription termination protein NusA [Escherichia coli TW10509] Length = 495 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQPQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|220934178|ref|YP_002513077.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219995488|gb|ACL72090.1| NusA antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 501 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 215/515 (41%), Positives = 322/515 (62%), Gaps = 25/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK ++++V+ + ++ A R +G D+RV I+ ETGD FR Sbjct: 2 NKEILMVVDAVSNEKGVEKEVIFEAIEAALGSATRKKHGGEIDVRVSIHRETGDYETFRR 61 Query: 66 LEVVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ E+ Q L A P I +G + +P+ +DFGR+A Q+AKQVI+QK Sbjct: 62 WLVVDDEDPEFESPERQKLLSYAHQTHPDIQVGEYIEEPMESVDFGRIAAQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + EF+ +VGE++ G VKR E V +DLG + + I R+E I RE +RP D Sbjct: 122 VREAERAKVVEEFRHRVGELVMGVVKRTERSGVFLDLGGNAEAFIPREEMIPRETVRPND 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ +VR E RGPQ+ +SRT P+F++++F +EVPE+ G++ + +RDPG RAK+A Sbjct: 182 RLRGYLKEVRSEPRGPQLFVSRTAPEFLIEMFKLEVPEVGQGLIDIMGAARDPGLRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+DS +DPVGACVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V Sbjct: 242 VRSNDSRLDPVGACVGMRGSRVQSVSNELAGERVDIILWDDNPAQFVINAMSPAEVLSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E+LS AIGR GQN+RLASQLTGW ++++ E + + + + E + Sbjct: 302 MDEDRHSMDIAVAEEKLSQAIGRGGQNIRLASQLTGWELNVMNEAQAAEKSEAEAAELQR 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ ++VDE +A +LV EGF+ +EE+A V SEI IE FDEE E++ RAR+ L Sbjct: 362 MFMENLDVDEEVAAILVQEGFSSIEEVAYVPTSEIMQIEEFDEEIVEELRARARDALLTK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I +++ +E+L ++ G+D + L GI TMEDLA +VDDL+ S Sbjct: 422 AIATEEQ-GGGEPAEDLLNMEGMDRDLAFKLAAKGICTMEDLAEQAVDDLVEIS------ 474 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR W ++ Sbjct: 475 -----------GLDAEKAGELIMTARAP--WFAED 496 >gi|152972093|ref|YP_001337239.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896676|ref|YP_002921421.1| transcription elongation factor NusA [Klebsiella pneumoniae NTUH-K2044] gi|262042727|ref|ZP_06015881.1| N utilization substance A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997774|ref|ZP_08302913.1| transcription termination factor NusA [Klebsiella sp. MS 92-3] gi|150956942|gb|ABR78972.1| transcription elongation factor NusA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549003|dbj|BAH65354.1| transcription elongation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039952|gb|EEW41069.1| N utilization substance A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538908|gb|EGF64969.1| transcription termination factor NusA [Klebsiella sp. MS 92-3] Length = 495 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARFEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GMTDEKAGELIMAAR-NICWFGDE 494 >gi|71083093|ref|YP_265812.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1062] gi|71062206|gb|AAZ21209.1| transcription termination factor [Candidatus Pelagibacter ubique HTCC1062] Length = 517 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 242/506 (47%), Positives = 350/506 (69%), Gaps = 3/506 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +++LELL+IA+AVA EKSID+++++ M I KAA+S +G ++I+V I+ E+GDI +F Sbjct: 6 SDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIF 65 Query: 64 RLLEVVEEVENYTCQISLKVA---RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R L VVE+ EN +I+L+ A + + IG + PLP DFGR+A Q+AKQVI Sbjct: 66 RKLIVVEKPENTNTEINLQDAIILNEANKDKKIGDEILQPLPSFDFGRIAAQTAKQVISF 125 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 VREAER+RQY +F DK I+SG VKR+E+GNVIVDLG ++ +I+++E I REN++ GD Sbjct: 126 NVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y YDV+RE RG Q+ LSR HP+FM KLF EVPEIY+G++++K+ +RDPGSRAK+ Sbjct: 186 RVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKIC 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D+S+DPVGACVGMRGSRVQAVV EL+ EKIDIV WS D A V NAL PA V +V Sbjct: 246 VKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVN 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D +++VI+ +E LS AIGRRGQNVRLA++L + I+I+T+ EDS RQ +F E+T+ Sbjct: 306 VDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTE 365 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + +DE + LLVAEGF+ + ++ + IEG +E+TA + RA+E+ + Sbjct: 366 NFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKD 425 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++I++LG+ ++L + G+ + V LGE I +ED A + D+L G + G Sbjct: 426 QEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGE 485 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHAR 506 K G+L K + + +I+ AR Sbjct: 486 RIKIQGYLEDFALSKTEADELIMSAR 511 >gi|194438826|ref|ZP_03070912.1| transcription termination/antitermination factor NusA [Escherichia coli 101-1] gi|194422298|gb|EDX38299.1| transcription termination/antitermination factor NusA [Escherichia coli 101-1] Length = 495 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQ V TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQTVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|206577127|ref|YP_002236420.1| transcription termination factor NusA [Klebsiella pneumoniae 342] gi|288933403|ref|YP_003437462.1| NusA antitermination factor [Klebsiella variicola At-22] gi|290511546|ref|ZP_06550915.1| N utilization substance protein A [Klebsiella sp. 1_1_55] gi|206566185|gb|ACI07961.1| transcription termination factor NusA [Klebsiella pneumoniae 342] gi|288888132|gb|ADC56450.1| NusA antitermination factor [Klebsiella variicola At-22] gi|289776539|gb|EFD84538.1| N utilization substance protein A [Klebsiella sp. 1_1_55] Length = 495 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARYEDESMNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GMTDEKAGELIMAAR-NICWFGDE 494 >gi|168754150|ref|ZP_02779157.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4401] gi|168769587|ref|ZP_02794594.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4486] gi|168773164|ref|ZP_02798171.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4196] gi|168781312|ref|ZP_02806319.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4076] gi|195938389|ref|ZP_03083771.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. EC4024] gi|208806905|ref|ZP_03249242.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4206] gi|208814506|ref|ZP_03255835.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4045] gi|208820220|ref|ZP_03260540.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4042] gi|209398727|ref|YP_002272640.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4115] gi|254795120|ref|YP_003079957.1| transcription elongation factor NusA [Escherichia coli O157:H7 str. TW14359] gi|187770909|gb|EDU34753.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4196] gi|189001070|gb|EDU70056.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4076] gi|189358578|gb|EDU76997.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4401] gi|189361406|gb|EDU79825.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4486] gi|208726706|gb|EDZ76307.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4206] gi|208735783|gb|EDZ84470.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4045] gi|208740343|gb|EDZ88025.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4042] gi|209160127|gb|ACI37560.1| transcription termination/antitermination factor NusA [Escherichia coli O157:H7 str. EC4115] gi|209758336|gb|ACI77480.1| transcription termination-antitermination factor NusA [Escherichia coli] gi|254594520|gb|ACT73881.1| transcription termination/antitermination L factor [Escherichia coli O157:H7 str. TW14359] Length = 495 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQVQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|315288929|gb|EFU48327.1| transcription termination factor NusA [Escherichia coli MS 110-3] Length = 495 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNCDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|110807038|ref|YP_690558.1| transcription elongation factor NusA [Shigella flexneri 5 str. 8401] gi|110616586|gb|ABF05253.1| transcription elongation factor NusA [Shigella flexneri 5 str. 8401] Length = 495 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVIFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|149185835|ref|ZP_01864150.1| transcription elongation factor NusA [Erythrobacter sp. SD-21] gi|148830396|gb|EDL48832.1| transcription elongation factor NusA [Erythrobacter sp. SD-21] Length = 554 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 284/538 (52%), Positives = 386/538 (71%), Gaps = 19/538 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKAAQKLEADARIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EF+D+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFNEFQDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALITKVERNNRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDGATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S RQK+F ER++ Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKRQKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V++ E+ASIEGFDEE A E+Q RA+E L+ + Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVELEELASIEGFDEELAEELQSRAQEALDRQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 ++ +ELGV + L +P + + V LG+ G+KT++D+A + D+L+ Sbjct: 425 AAHREVRQELGVDDALAELPHMTEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 473 --------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 ++ + G L G ++Q +I+ AR W E E A Sbjct: 485 NNNPDGPPMRRDRPMREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEDEAAPAA 540 >gi|260596201|ref|YP_003208772.1| transcription elongation factor NusA [Cronobacter turicensis z3032] gi|260215378|emb|CBA27401.1| Transcription elongation protein nusA [Cronobacter turicensis z3032] Length = 495 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR DPS+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTREITLEAARYEDPSLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRENITLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRAKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ ++G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATILVEEGFSTLEELAYVPMKELLEVDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T++DLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGMDRTLAYKLAARGVCTLDDLADQGVDDLADID---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NIRWFSDE 494 >gi|110643410|ref|YP_671140.1| transcription elongation factor NusA [Escherichia coli 536] gi|110345002|gb|ABG71239.1| N utilization substance protein A [Escherichia coli 536] Length = 495 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGVQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + ++L ++ G+D + L G+ ++EDLA +DDL Sbjct: 422 EESLGDNKPCDDLLNLEGVDRDLAFKLAARGVCSLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|294634514|ref|ZP_06713049.1| L factor [Edwardsiella tarda ATCC 23685] gi|291092028|gb|EFE24589.1| L factor [Edwardsiella tarda ATCC 23685] Length = 495 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 202/512 (39%), Positives = 315/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVAIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR DP+ D+G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTQPTREITLEAARFEDPAFDLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSISLDLGNNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEASNLAQAIGRNGQNVRLASQLSGWELNVMTAEDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF+ +EELA V E+ +I+G DEE+ ++ RA+ L + + Sbjct: 362 HLDIDEEFATLLVEEGFSTLEELAYVPERELLAIDGLDEESVEALRTRAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLPGMERSVAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G D +I+ AR + W + Sbjct: 472 -------GLNHDSAGELIMAAR-NICWFGDSE 495 >gi|89052531|ref|YP_507982.1| transcription elongation factor NusA [Jannaschia sp. CCS1] gi|88862080|gb|ABD52957.1| NusA antitermination factor [Jannaschia sp. CCS1] Length = 590 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 286/566 (50%), Positives = 382/566 (67%), Gaps = 53/566 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 + SAN+LELLQ A+AVA EK ID ++V+ M +S+ +AA+S YG+ DIRV I+ +TG Sbjct: 3 ITSANQLELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTGRA 62 Query: 61 SLFRLLEVVEE--VENYTCQISLKVA------------------RDRDPSID-------- 92 + R+ V +E +EN ++ L A D + Sbjct: 63 TFTRVRTVADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRDVR 122 Query: 93 -------------------------IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 IG +++D +PP++ GR+A QSAKQVI+QKVREAER Sbjct: 123 RFVMRKPTENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREAER 182 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DRQ+ EFKD+VGEII+G VKR EYGNVIVD+G+ + +RR+E I RE R GDR++ YI Sbjct: 183 DRQFAEFKDRVGEIINGVVKREEYGNVIVDVGSGEAQLRRNEKIGREAYRNGDRIRCYIK 242 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVRRE RG Q+ LSRT P+FM +LF MEVPEIY+GI+++KAV+RDPGSRAK+AV S D+ Sbjct: 243 DVRRENRGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNG 302 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D+ TF++NAL+PA V+KVVLDED G+ Sbjct: 303 IDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGK 362 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IEV+VP EQLSLAIGRRGQNVRLASQLT IDI+TEEE+S RQ +F ERT+ FM ++ Sbjct: 363 IEVVVPDEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLD 422 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +DE A LLV+EGF +EE+A V+ E+ I+G DE TA E+Q RAR+YLE + +K Sbjct: 423 LDEFFAQLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLALEK 482 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 +E+GV E L + G+ ++ VALGE+G+KT+ED A C+ +L G +GG K DG Sbjct: 483 AKEMGVEESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDDGL 542 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIE 513 L ++ ++M++ AR ++GW+ Sbjct: 543 LEPFEVSLEEAQNMVMTARLQLGWVT 568 >gi|82778483|ref|YP_404832.1| transcription elongation factor NusA [Shigella dysenteriae Sd197] gi|309785496|ref|ZP_07680127.1| transcription elongation protein nusA [Shigella dysenteriae 1617] gi|81242631|gb|ABB63341.1| transcription pausing [Shigella dysenteriae Sd197] gi|308926616|gb|EFP72092.1| transcription elongation protein nusA [Shigella dysenteriae 1617] Length = 495 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLTFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|283788203|ref|YP_003368068.1| transcription elongation protein [Citrobacter rodentium ICC168] gi|282951657|emb|CBG91357.1| transcription elongation protein [Citrobacter rodentium ICC168] Length = 495 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTQPTKEITLEAARFEDESLNLGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G++ ++ L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGMNRELAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|262274884|ref|ZP_06052695.1| transcription termination protein NusA [Grimontia hollisae CIP 101886] gi|262221447|gb|EEY72761.1| transcription termination protein NusA [Grimontia hollisae CIP 101886] Length = 495 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 315/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALETALATATKKKYDADIDVRVAIDRKTGEFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTLPTREITLEAAQFDDETLELGSYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F + GE+I+G VK+V VIVDLGN+ + I+RD+ + REN RPGDRV+ Sbjct: 122 ERAQVVEQFMENEGELITGVVKKVNRDVVIVDLGNNAEAAIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI +++V +RDPGSRAK+AV ++ Sbjct: 182 LLYAVRPEARGFQLFMTRSKPEMLIELFRIEVPEIGEEMIEVMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ Q++ + + F + Sbjct: 302 THTMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVQDLQKKHQEEAGQSIELFSK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +E+ I G DE+T E++ RA+E L I + Sbjct: 362 HLDIDEDFAAVLVEEGFTTLEEVAYVPAAELLEINGLDEDTVEELRSRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ + L GI T+EDLA DDLL Sbjct: 422 EEILEGAEPAEDLLGLEGLERDLAFRLAAKGICTLEDLADQGTDDLLDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W E Sbjct: 472 -------GMDEVKAGELIMAAR-NICWFSDE 494 >gi|295687485|ref|YP_003591178.1| transcription termination factor NusA [Caulobacter segnis ATCC 21756] gi|295429388|gb|ADG08560.1| transcription termination factor NusA [Caulobacter segnis ATCC 21756] Length = 560 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 297/514 (57%), Positives = 392/514 (76%), Gaps = 3/514 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ANRLELLQIADAVA EK I+++VV+ + D++QKAAR+ YG DIRV+I+P+TG+ + Sbjct: 5 IAANRLELLQIADAVAREKGIEKEVVIEAIEDALQKAARARYGAEHDIRVKIDPKTGETT 64 Query: 62 LFRLLEVVEEVENYTCQI---SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R++EVV + +I L +A+ +IG V + LPP + GRV Q A+QV+ Sbjct: 65 QKRVIEVVSDDAELEGEIGKMPLSIAKRAWRDAEIGKVYEEALPPFEIGRVQTQMARQVV 124 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 + KVREAER+RQY E+KD+VGEI++G+VKRVEYGNVIVDLG +G++RRD++I REN Sbjct: 125 MHKVREAERERQYDEYKDRVGEIVNGSVKRVEYGNVIVDLGRGEGIMRRDQSIPRENFNV 184 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+++YIYDVRRE +GPQ++LSR H FM KLF EVPE+Y+G+++++AV+RDPGSRAK Sbjct: 185 GDRIRAYIYDVRRETKGPQIMLSRAHGGFMAKLFAQEVPEVYDGVIEIRAVARDPGSRAK 244 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D ATF++NAL PA V+K Sbjct: 245 MAVISNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWSEDEATFIVNALAPAEVSK 304 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VV+DE+ R+EV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE ++S RQ++F ER Sbjct: 305 VVMDEEDERVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIMTESQESERRQREFTER 364 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 T F +A++VDE+IA LLV EGFA VE++A V+ EIA+IEGFDEETA E+Q RARE+LE Sbjct: 365 TALFQEALDVDEVIAQLLVTEGFAAVEDVAYVEPHEIAAIEGFDEETAEELQARAREFLE 424 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 L K + LGV +E+ +I G+ + VALGE +KT+EDLAG DD+ GW E+K Sbjct: 425 KEAAELDAKRKALGVEDEVLAIEGVTLAMAVALGEGDVKTVEDLAGLVPDDMRGWFESKN 484 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + G L + + E++I+ AR MGW+ Sbjct: 485 GERVREPGILETFNLSPEDAEALIMRARVAMGWV 518 >gi|82545591|ref|YP_409538.1| transcription elongation factor NusA [Shigella boydii Sb227] gi|187731710|ref|YP_001881914.1| transcription elongation factor NusA [Shigella boydii CDC 3083-94] gi|81247002|gb|ABB67710.1| NusA [Shigella boydii Sb227] gi|187428702|gb|ACD07976.1| transcription termination/antitermination factor NusA [Shigella boydii CDC 3083-94] gi|320175533|gb|EFW50629.1| Transcription termination protein NusA [Shigella dysenteriae CDC 74-1112] gi|320186658|gb|EFW61382.1| Transcription termination protein NusA [Shigella flexneri CDC 796-83] gi|332090718|gb|EGI95812.1| transcription elongation protein nusA [Shigella boydii 3594-74] Length = 495 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ ++LGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GVTDEKAGALIMAAR-NICWFGDE 494 >gi|157148740|ref|YP_001456059.1| transcription elongation factor NusA [Citrobacter koseri ATCC BAA-895] gi|157085945|gb|ABV15623.1| hypothetical protein CKO_04570 [Citrobacter koseri ATCC BAA-895] Length = 495 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTLPTKEITLEAARFEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLDIDEEFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + S++L ++ G+ + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPSDDLLNLEGLGRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|295097658|emb|CBK86748.1| transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 500 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGLPGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL Sbjct: 422 LALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|315294914|gb|EFU54253.1| transcription termination factor NusA [Escherichia coli MS 153-1] Length = 495 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ID VGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDLVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 472 -------GLTDEKAGALIMAAR-NICWFGDE 494 >gi|237730089|ref|ZP_04560570.1| transcription elongation factor NusA [Citrobacter sp. 30_2] gi|226908695|gb|EEH94613.1| transcription elongation factor NusA [Citrobacter sp. 30_2] Length = 495 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREHEGEIVTGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGFA +EELA V + E+ I+G DE+T ++ RA+ L + + Sbjct: 362 YLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEQTVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D ++ L G+ T+EDLA +DDL Sbjct: 422 EESLGDNKPADDLLNLEGLDREMAFKLAARGVCTLEDLAEQGIDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|85373514|ref|YP_457576.1| transcription elongation factor NusA [Erythrobacter litoralis HTCC2594] gi|84786597|gb|ABC62779.1| N-utilization substance protein A [Erythrobacter litoralis HTCC2594] Length = 557 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 286/531 (53%), Positives = 386/531 (72%), Gaps = 18/531 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANKAELLAIANAVASEKMIDKAIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ + IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKSAQKLEEGAAIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+ GE+I+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFEEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRAIITKVERNNRGPQIFLSRAHPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDQATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F ER++ Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V + E+A+IEGFDEE A E+Q RA+E LE Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVAMEELAAIEGFDEELAEELQSRAQEALERQA 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 +K+ RELGV ++L +P + ++ V LG++GIKT++DLA + D+L+ Sbjct: 425 EAYRKERRELGVEDDLAELPHLSEQMLVTLGKSGIKTLDDLADLATDELIQKKREAPRRR 484 Query: 473 -------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ + G L G ++Q +I+ AR W E E+ Sbjct: 485 NTAEGPRMRSDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEE 533 >gi|296104883|ref|YP_003615029.1| transcription elongation factor NusA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059342|gb|ADF64080.1| transcription elongation factor NusA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 500 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL Sbjct: 422 LALAQEESLGDKKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|271499173|ref|YP_003332198.1| transcription termination factor NusA [Dickeya dadantii Ech586] gi|270342728|gb|ACZ75493.1| transcription termination factor NusA [Dickeya dadantii Ech586] Length = 496 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 316/508 (62%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALAN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++Q +I+ AR + W Sbjct: 472 -------GLNEEQAGELIMAAR-NICWF 491 >gi|251791036|ref|YP_003005757.1| transcription elongation factor NusA [Dickeya zeae Ech1591] gi|247539657|gb|ACT08278.1| NusA antitermination factor [Dickeya zeae Ech1591] Length = 496 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPINELQEIDGLDEETIEALRERAKAALTTLALAN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++Q +I+ AR + W Sbjct: 472 -------GLDEEQAGELIMAAR-NICWF 491 >gi|162147158|ref|YP_001601619.1| transcription elongation factor NusA [Gluconacetobacter diazotrophicus PAl 5] gi|209544214|ref|YP_002276443.1| transcription elongation factor NusA [Gluconacetobacter diazotrophicus PAl 5] gi|161785735|emb|CAP55306.1| Transcription elongation protein nusA [Gluconacetobacter diazotrophicus PAl 5] gi|209531891|gb|ACI51828.1| NusA antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 523 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 286/511 (55%), Positives = 371/511 (72%), Gaps = 16/511 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 S +R ELL +ADAVA EK+IDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 3 TSVSRPELLLVADAVAREKAIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VEEVEN QI L +AR P I +G + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 63 LSRWTEAVEEVENEETQIPLHIARKFKPEIQLGEHLVDPLPPIDFGRIAAQTAKQVIVQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEI++GTVKR EYGN++V++G+S+ ++RRDE I RE+ R DR Sbjct: 123 VREYERKRQYDEFKDRVGEIVNGTVKRTEYGNLMVEIGSSEALLRRDELIPRESFRNSDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV Sbjct: 183 VRAYIYDVRDEPRGPQIFLSRTHPAFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+ Sbjct: 243 ISRDASIDPVGACVGMRGSRVQAVVQELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP EQLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F R+ Sbjct: 303 DEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRRRSGL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IA LLV EGF +EELA E+A IEGFDE+ A E+ RA +L + Sbjct: 363 FVEALDVDDVIAGLLVTEGFHSIEELAYADPDELAEIEGFDEDVAGELVRRAEGFLARRE 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 L +K R LGVS+++ ++ +++ V LGE G+K+++DLA + D+L+ Sbjct: 423 DELDEKRRGLGVSDDVAALGVFSNQMLVTLGEKGVKSLDDLADLAGDELVEI-------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 L ++ +I+ AR W Sbjct: 475 ------LGGEVIDEEAANEIIMAARAH--WF 497 >gi|261342615|ref|ZP_05970473.1| L factor [Enterobacter cancerogenus ATCC 35316] gi|288315263|gb|EFC54201.1| L factor [Enterobacter cancerogenus ATCC 35316] Length = 500 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEII+G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERALVVDQFRDQEGEIITGVVKKVNRDNISLEIKSEGMPGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIDGLDEATVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D I L G+ T+EDLA VDDL Sbjct: 422 LALAQEESLGDNKPADDLLNLEGLDRAIAFKLAARGVCTLEDLAEQGVDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|85058354|ref|YP_454056.1| transcription elongation factor NusA [Sodalis glossinidius str. 'morsitans'] gi|84778874|dbj|BAE73651.1| transcription pausing L factor [Sodalis glossinidius str. 'morsitans'] Length = 495 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 203/510 (39%), Positives = 312/510 (61%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIEVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L A+ DP+ IGG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLDAAQFDDPTAQIGGYIEDEIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRSHEGEIVTGVVKKVNRDSISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQAKHQAEAHAAIDIFTR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L + + Sbjct: 362 NLDIDEEFATVLVEEGFSSLEELAYVPINELLEIEGLDEETVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L +P ++ + L G+ T+EDLA VDDL Sbjct: 422 EENRGAGVPAEDLLGLPELERDMAFKLAARGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G ++ +I+ AR + W Sbjct: 472 -------GLSSEKAGELIMAAR-NICWFGD 493 >gi|242240750|ref|YP_002988931.1| transcription elongation factor NusA [Dickeya dadantii Ech703] gi|242132807|gb|ACS87109.1| NusA antitermination factor [Dickeya dadantii Ech703] Length = 496 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 204/513 (39%), Positives = 316/513 (61%), Gaps = 19/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQDIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ +P +D+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEEPEVDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNITLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDVFTR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 YLDIDEEFATALVEEGFSSLEELAYVPITELQEIDGLDEETIEALRERAKAALTTLALAR 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGAGQPAEDLLNLAGLPREMAFTLAARGVCTLEDLAEQGVDDLTDID---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +++ +I+ AR + W Sbjct: 472 -------GLNEERAGELIMAAR-NICWFGDSNE 496 >gi|307129384|ref|YP_003881400.1| transcription termination/antitermination L factor [Dickeya dadantii 3937] gi|306526913|gb|ADM96843.1| transcription termination/antitermination L factor [Dickeya dadantii 3937] Length = 496 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 316/508 (62%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV EV T +I+L+ A+ +PSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WQVVNEVTQPTREITLEAAQFEEPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATALVEEGFSSLEELAYVPIHELQEIDGLDEETIEALRERAKAALTTLALAN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+ ++ L G+ T+EDLA VDDL Sbjct: 422 EENRGNGQPAEDLLNLSGLSRELAFKLAARGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + Q +I+ AR + W Sbjct: 472 -------GLDEAQAGELIMAAR-NICWF 491 >gi|291616009|ref|YP_003518751.1| NusA [Pantoea ananatis LMG 20103] gi|291151039|gb|ADD75623.1| NusA [Pantoea ananatis LMG 20103] Length = 500 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 204/514 (39%), Positives = 320/514 (62%), Gaps = 19/514 (3%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD Sbjct: 4 TRMNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDT 63 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 FR E+VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKV Sbjct: 64 FRRWEIVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR Sbjct: 124 REAERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 184 IRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+ Sbjct: 244 KTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 304 DEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDM 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + Sbjct: 364 FTKHLDIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 424 LAKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE------- 476 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 477 ----------GLTDEQAGALIMAAR-NICWFGDD 499 >gi|146313241|ref|YP_001178315.1| transcription elongation factor NusA [Enterobacter sp. 638] gi|145320117|gb|ABP62264.1| NusA antitermination factor [Enterobacter sp. 638] Length = 495 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 314/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARYEDESFNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRSHEGEIITGVVKKVNRDNIALDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKAEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAAIATFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE A +LV EGF+ +EELA V I E+ I+G DE T ++ RA+ L + + Sbjct: 362 YLEIDEDFATVLVEEGFSSLEELAYVPIKELLEIDGLDEATVEALRERAKNALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D I L +G+ T+EDLA VDDL Sbjct: 422 EESLGDNKPADDLLNLEGLDRAIAFKLAAHGVCTLEDLAEQGVDDLADIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 -------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|85712989|ref|ZP_01044027.1| transcription elongation factor NusA [Idiomarina baltica OS145] gi|85693158|gb|EAQ31118.1| transcription elongation factor NusA [Idiomarina baltica OS145] Length = 497 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 206/512 (40%), Positives = 325/512 (63%), Gaps = 23/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+R++I+ TG+ FR Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIDVRIDIDRATGEFDTFRRWL 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ +E+ +ISL A+ DPS+ +G V + + + F R+ Q+AKQVI+QKVR Sbjct: 64 VVEDTDTGLEHPYREISLSAAQYEDPSLQLGDYVEEQIESIQFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + E++D+VGE+++GTVKR +VI+DLGN+ + +I R+E + RE++RPGDRV Sbjct: 124 EAERAQVVDEYRDQVGELVTGTVKRANREHVILDLGNNAEAIIYREEMLPRESVRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +YDVR E RG Q+ ++R+ P+F+++LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 184 RGLLYDVRPEARGAQLFVTRSRPEFLMELFRIEVPEIGEEMIELKGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V+D Sbjct: 244 SNDRRIDPVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVASIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIG+ GQNVRLASQL+GWT++++T ++ + + + N F Sbjct: 304 EDAHTMDIAVAADNLAQAIGKSGQNVRLASQLSGWTLNVMTVDDFNEKNEAETNRLLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++++DE A +LV EGF+ +EE+A V ++E IEG DE+ E++GRAR YL + Sbjct: 364 ITSLDIDEDFASVLVDEGFSSLEEVAYVPVAEFLEIEGMDEDIVEELRGRARAYLTTKAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + E L + G+D + L G+ ++E+LA +DDL G E Sbjct: 424 ADEESLESAEPDESLLGLEGMDRHLAYVLASRGVTSLEELAEQGIDDLAGIEE------- 476 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + Q +I+ AR + W + Sbjct: 477 ----------LDEQQAGDLIMKAR-NICWFSE 497 >gi|296285012|ref|ZP_06863010.1| transcription elongation factor NusA [Citromicrobium bathyomarinum JL354] Length = 557 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 282/542 (52%), Positives = 381/542 (70%), Gaps = 20/542 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P+TGD+ Sbjct: 5 ISANRAELLAIANSVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPQTGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGAAVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ L+R HP FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALISKVERNNRGPQIFLTRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS + ATF++NAL+PA V++VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEEEATFIVNALQPATVSRVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S + K+F R++ Sbjct: 305 DEDESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGNQIDIMTEEEASEKQSKEFAARSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA++EE+A V++ E+A IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFAELEEVAYVQLDELAMIEGFDEELAEELQSRATEALERQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLG--------- 472 ++ RELGV + L +P + + V LG+ G+KT++D+A + D+L+ Sbjct: 425 AAHREARRELGVEDALADLPHLSEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 473 ---------WSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 ++ + G L G ++Q +I+ AR W E E+ A Sbjct: 485 NNANADGPPMRRDRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFEDEEPAKPATA 542 Query: 524 DA 525 Sbjct: 543 SE 544 >gi|170727895|ref|YP_001761921.1| transcription elongation factor NusA [Shewanella woodyi ATCC 51908] gi|169813242|gb|ACA87826.1| NusA antitermination factor [Shewanella woodyi ATCC 51908] Length = 499 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 201/515 (39%), Positives = 317/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV+I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVQIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ DP I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDTGEPLENPFSEITLEAAQFEDPEIQLGDYIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ D V+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQVVDQFRDKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++ Sbjct: 242 VKSNDKRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMSPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKIVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+ VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ + Sbjct: 362 LFVSALEVDEDFAQVLADEGFTSLEEVAYVPESELMEIDGFDEEIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAFVLASKGVITLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGEE 498 >gi|300718578|ref|YP_003743381.1| transcription elongation protein [Erwinia billingiae Eb661] gi|299064414|emb|CAX61534.1| Transcription elongation protein [Erwinia billingiae Eb661] Length = 495 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 318/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIEVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L AR D ++++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVDEVTMPTREITLDAARYEDEALNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+ + GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFRQQEGEIITGVVKKVNRDNISLDLGSNAEAVIIREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLA+QL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLAAQLSGWELNVMTVDDLQAKHQAEAHAAIDVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEDFATVLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G+D ++ L G+ T+EDLA VDDL Sbjct: 422 EESLGDNQPAEDLLNLEGLDRELAFKLAAIGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q +I+ AR + W + Sbjct: 472 -------GLNDEQAGELIMAAR-NICWFGDD 494 >gi|327396260|dbj|BAK13682.1| transcription elongation protein NusA [Pantoea ananatis AJ13355] Length = 495 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 319/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE+V T +I+L AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEIVEQVTQPTREITLDAARYEDESLNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVLEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EE+A V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATILVEEGFSTLEEMAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 472 -------GLTDEQAGALIMAAR-NICWFGDD 494 >gi|161506147|ref|YP_001573259.1| transcription elongation factor NusA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867494|gb|ABX24117.1| hypothetical protein SARI_04337 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 500 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAETHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKHLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|119774097|ref|YP_926837.1| transcription elongation factor NusA [Shewanella amazonensis SB2B] gi|119766597|gb|ABL99167.1| NusA antitermination factor [Shewanella amazonensis SB2B] Length = 499 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 207/515 (40%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F DK GEII+G VK+ +VIVDLGN+ DGV+ +++ I+RE+ RPGD Sbjct: 122 VREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P+ +++LF +EVPEI + ++QV +RDPGSRAK+A Sbjct: 182 RVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T + + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVVA 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM +++VDE A +L EGF +EE+A V ++E+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SEEL ++ G+D + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498 >gi|304310506|ref|YP_003810104.1| N utilization substance protein A [gamma proteobacterium HdN1] gi|301796239|emb|CBL44447.1| N utilization substance protein A [gamma proteobacterium HdN1] Length = 494 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 319/509 (62%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + + V+ EK + RDV+ + ++ A + + +D+RV IN TG +R Sbjct: 4 EILLVVETVSNEKGVPRDVIFEAVETALATATKKRFPNEDADVRVSINRTTGAYDTWRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV E+ E ++L A D D IG + + +P +DFGR+A Q+AKQVI+QKVRE Sbjct: 64 TVVLDEDFEFPGRHMTLDEAHDHDTKYKIGDIYEEKIPSIDFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + F DK+G +++G VK+V NVI+DLG + + ++ R++ I RE LR DRV+ Sbjct: 124 AERAQIADAFSDKIGHLVNGVVKKVTRDNVILDLGGNAEALLPREDLIGRETLRVNDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++ + +E RG Q+ +SR P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV + Sbjct: 184 GVLFSINKENRGAQLYVSRARPEMLIELFKIEVPEIGEDIIEIKAAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A FVINA+ PA V +V+DE Sbjct: 244 NDQRIDPVGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQFVINAMSPAEVVSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +++ V +EQL+LAIGR GQN+RLAS+L+GW ++++T ++ ++++ + FM Sbjct: 304 ESHSMDIAVEEEQLALAIGRGGQNIRLASELSGWELNVMTVKDAEAKQRQESESYLKVFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + VDE +A +LV EGFA VEE+A V E+ SIEGFDE+ E++ RA+ L + Sbjct: 364 DELGVDEELAQVLVDEGFASVEEVAYVPKEEMLSIEGFDEDLVDELRSRAKNALLTRALV 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 +++ + +++L S+ G+D ++ +AL + GI TMEDLA +VDDLL Sbjct: 424 DEEQNQGGSPADDLLSMEGMDKELALALAKKGICTMEDLAEQAVDDLLDIE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWI 512 ++ ++I+ AR W Sbjct: 475 --------NLDAEKAAALIMTARAP--WF 493 >gi|156975664|ref|YP_001446571.1| transcription elongation factor NusA [Vibrio harveyi ATCC BAA-1116] gi|156527258|gb|ABU72344.1| hypothetical protein VIBHAR_03397 [Vibrio harveyi ATCC BAA-1116] Length = 495 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 205/509 (40%), Positives = 320/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494 >gi|330813317|ref|YP_004357556.1| transcription termination protein NusA [Candidatus Pelagibacter sp. IMCC9063] gi|327486412|gb|AEA80817.1| transcription termination protein NusA [Candidatus Pelagibacter sp. IMCC9063] Length = 514 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 263/505 (52%), Positives = 366/505 (72%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL++IADAVA EKSI +D+VL+ M +I+KAA++ YG ++I V I+ TG I L R Sbjct: 7 DSTELIRIADAVADEKSISKDLVLTSMESAIEKAAKTRYGNENEIYVVIDRATGKIELGR 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L+VVE+V N +I L A +++ I +V++ LPP+DFGR+A Q+AKQVI ++R+ Sbjct: 67 KLKVVEKVMNTHSEIGLGEALEKNSEAKIDDIVNEELPPVDFGRIAAQTAKQVISHQIRD 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDRQ+ EFKDKVGEI+SG VKR EYGNVIVDL S+ +IRR+E I RENL+ GDR+K+ Sbjct: 127 AERDRQFEEFKDKVGEILSGIVKRSEYGNVIVDLQKSEAIIRREELIPRENLKNGDRIKA 186 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y YDVRRE +GPQ+ LSR HPQF+ KLFH EVPEIY G + +K+V+RDPGSRAK+ V S Sbjct: 187 YCYDVRRESKGPQIFLSRAHPQFLAKLFHQEVPEIYEGTIGIKSVARDPGSRAKICVQSK 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DSSIDPVGACVGMRGSRVQA+V EL+ EKIDI+ W+ D+++ V +AL PA V KV++ ED Sbjct: 247 DSSIDPVGACVGMRGSRVQAIVNELQGEKIDIINWTEDASSLVKSALSPAEVMKVIIAED 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 RIEV++ ++ LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F + T+ ++ Sbjct: 307 DRRIEVVIDEDNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQTEFKDNTEKLVK 366 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++ +D +A LLVAEGF + +A + E IEGFDEET+ E+Q RA+EY++ + Sbjct: 367 SLEIDTTMAQLLVAEGFPTINAIANASLPEFLKIEGFDEETSTELQNRAKEYIQEEAEEV 426 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 KK++ELG+ ++L + G+ + + LGE+ IKT++D A + D+L+G + G EKF Sbjct: 427 SKKVKELGIEDDLATHKGLSLGMLLILGEDNIKTLKDFAELATDELIGGYDEIKGKREKF 486 Query: 485 DGFLSSLGTPKDQVESMIIHARYKM 509 DG L + + +I+ AR K+ Sbjct: 487 DGILEEFDISRKDADDLIMRARKKV 511 >gi|226946308|ref|YP_002801381.1| transcription elongation factor NusA [Azotobacter vinelandii DJ] gi|226721235|gb|ACO80406.1| Transcription termination factor NusA [Azotobacter vinelandii DJ] Length = 493 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 218/509 (42%), Positives = 330/509 (64%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + Y D+RV+IN ++G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRYEDDVDLRVQINRQSGAYDTFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +EN +++L AR+R P + +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDDLLENPAAELTLDEARERKPDVRVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G RV++ Sbjct: 124 ERAQVVDVYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGARVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P +++LF +EVPEI G+++VKA SRDPGSRAK+AV S Sbjct: 184 LLKEIRPENRGPQLILSRTAPGMLIELFRIEVPEIAEGLIEVKAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V + L+ AIGR GQNVRLASQLTGWT++++TE + ++ + + + F++ Sbjct: 304 AHAMDVAVADDNLAQAIGRGGQNVRLASQLTGWTLNVMTEGDIQAKQRAETGDILRSFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLAIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E +E+L S+ G+D ++ V L G+ T EDLA S+DDLL Sbjct: 424 EEKLVEAHPAEDLLSLEGMDKELAVELAMRGVITREDLAEQSIDDLLDID---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +I+ AR W E Sbjct: 474 -------GMDEERAGKLIMAARAH--WFE 493 >gi|283836285|ref|ZP_06356026.1| L factor [Citrobacter youngae ATCC 29220] gi|291067648|gb|EFE05757.1| L factor [Citrobacter youngae ATCC 29220] Length = 500 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 203/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGFA +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 DTFTKYLDIDEDFATVLVEEGFATLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LALAQEESLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAEQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|269961979|ref|ZP_06176334.1| N utilization substance protein A [Vibrio harveyi 1DA3] gi|269833302|gb|EEZ87406.1| N utilization substance protein A [Vibrio harveyi 1DA3] Length = 495 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 205/509 (40%), Positives = 320/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VEN T +ISL+ A+ D I +G V D +P + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEDVENPTKEISLEAAQYEDADIQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVMDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELVEELRSRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494 >gi|326388032|ref|ZP_08209636.1| transcription elongation factor NusA [Novosphingobium nitrogenifigens DSM 19370] gi|326207533|gb|EGD58346.1| transcription elongation factor NusA [Novosphingobium nitrogenifigens DSM 19370] Length = 551 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 281/526 (53%), Positives = 377/526 (71%), Gaps = 15/526 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IA+AVA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P +GD+ Sbjct: 5 ISANRAELLAIANAVASEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK A P IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEHVEDYFKQVDLKQAEKLQPGAKIGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQYDEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREVPRVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR HP FM +LF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALILRVERTNRGPQIFLSRAHPDFMKRLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V++VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLAS LTG IDI+TE E S RQK+F ER++ Sbjct: 305 DEEESRIEVVVPDDQLSLAIGRRGQNVRLASSLTGSAIDIMTEAEASEKRQKEFTERSKT 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGF+++EE+ + I+E+A+IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFSELEEVGYIDIAELATIEGFDEELATELQNRALEALERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL---------- 471 +++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 EGQRQERRALGVEDALADLPHLTEAMLVTLGKAGIKTLDDLADLATDELIARKRGGEQRR 484 Query: 472 ---GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 ++ E G L G ++Q +I+ AR W + Sbjct: 485 RGGNDRRDRSERSEDKGGVLGEYGLNEEQGNEIIMAARAH--WFDD 528 >gi|311277858|ref|YP_003940089.1| NusA antitermination factor [Enterobacter cloacae SCF1] gi|308747053|gb|ADO46805.1| NusA antitermination factor [Enterobacter cloacae SCF1] Length = 500 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 203/516 (39%), Positives = 318/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTQPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGMVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE+T ++ RA+ L Sbjct: 362 DTFTKYLDIDEEFATVLVEEGFSSLEELAYVPMKELLEIDGLDEDTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++ + +++L ++ G+D + L G+ T+EDLA VDDL E Sbjct: 422 LALAQEESLGNNKPADDLLNLEGLDRAMAFKLAARGVCTLEDLAEQGVDDLADIEE---- 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 -------------MTDEKAGELIMAAR-NICWFGDE 499 >gi|192361293|ref|YP_001980958.1| transcription elongation factor NusA [Cellvibrio japonicus Ueda107] gi|190687458|gb|ACE85136.1| N utilization substance protein A [Cellvibrio japonicus Ueda107] Length = 493 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 216/510 (42%), Positives = 331/510 (64%), Gaps = 22/510 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAV+ EK +D++++ + ++ A + + S I V IN TGD +R Sbjct: 2 NKEILLVADAVSNEKGVDKELIFQAIETALATATKKRFDEDSTIEVIINRTTGDYETWRS 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VV + + Q +L+ A ++D S+ G V + + +FGR+A Q+AKQVI+QKVR Sbjct: 62 WDVVSDDILAELGTQFTLEEAHEKDTSLKAGDVYREKIENAEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + E++D++GE++SGTVK+V ++IVDLGN+ +GV+ RD+ I RE R GDRV Sbjct: 122 EAERAQMVDEYRDRMGELVSGTVKKVTRDSIIVDLGNNAEGVLPRDQLIGREIFRMGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+LLSR+ PQ +V+LF +EVPEI ++++K +RDPG RAK+AV Sbjct: 182 RALLLDVRTEARGPQLLLSRSAPQMLVELFKIEVPEIAEEVIEIKGAARDPGLRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA + +V+D Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQFVINAMSPAEIESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +E L++AIGR GQNVRLA +LTGW I++++ + ++ + Q F Sbjct: 302 EDARSMDLAVNEENLAMAIGRGGQNVRLACELTGWNINVMSVADWQAKQEAESGSYIQIF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M A++VDE IA +LV EGF +EE+A V + E+ +I+GFD++ A E++ RA++ L + Sbjct: 362 MSALDVDEDIAGVLVEEGFTTLEEVAYVPLEEMLAIDGFDQDIAEELRARAKDALLTQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ + +E+L S+ G+DS++ + L GI TMEDLA S+DDLL Sbjct: 422 ASEERLEGVAPAEDLLSMEGMDSQLAIRLASRGIVTMEDLAEQSIDDLLDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G + + ++I+ AR W Sbjct: 474 ---------GVDETRAAALIMKAREP--WF 492 >gi|168237988|ref|ZP_02663046.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733934|ref|YP_002116237.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709436|gb|ACF88657.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289151|gb|EDY28520.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 500 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALTT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|16766585|ref|NP_462200.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415219|ref|YP_152294.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181798|ref|YP_218215.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616293|ref|YP_001590258.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552065|ref|ZP_02345818.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990148|ref|ZP_02571248.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231896|ref|ZP_02656954.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243121|ref|ZP_02668053.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262702|ref|ZP_02684675.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463490|ref|ZP_02697407.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819644|ref|ZP_02831644.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442917|ref|YP_002042544.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450306|ref|YP_002047316.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469393|ref|ZP_03075377.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248686|ref|YP_002148213.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265797|ref|ZP_03165871.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364149|ref|YP_002143786.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243925|ref|YP_002217260.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388465|ref|ZP_03215077.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928046|ref|ZP_03219246.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858537|ref|YP_002245188.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585085|ref|YP_002638884.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910082|ref|ZP_04653919.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141550|sp|P37430|NUSA_SALTY RecName: Full=Transcription elongation protein nusA; AltName: Full=L factor; AltName: Full=N utilization substance protein A gi|16421846|gb|AAL22159.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129476|gb|AAV78982.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129431|gb|AAX67134.1| transcription pausing; L factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365657|gb|ABX69425.1| hypothetical protein SPAB_04099 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401580|gb|ACF61802.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408610|gb|ACF68829.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455757|gb|EDX44596.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633199|gb|EDX51613.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095626|emb|CAR61194.1| L factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212389|gb|ACH49786.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244052|gb|EDY26672.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938441|gb|ACH75774.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605563|gb|EDZ04108.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322368|gb|EDZ07565.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323222|gb|EDZ11061.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331138|gb|EDZ17902.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333927|gb|EDZ20691.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337851|gb|EDZ24615.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343493|gb|EDZ30257.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348590|gb|EDZ35221.1| transcription termination/antitermination factor NusA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710340|emb|CAR34698.1| L factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469613|gb|ACN47443.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248453|emb|CBG26290.1| L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995484|gb|ACY90369.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159837|emb|CBW19356.1| transcription termination/antitermination L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914313|dbj|BAJ38287.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087734|emb|CBY97498.1| Transcription elongation protein nusA N utilization substance protein A; L factor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225971|gb|EFX51025.1| Transcription termination protein NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615292|gb|EFY12213.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618349|gb|EFY15240.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622846|gb|EFY19690.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626832|gb|EFY23629.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631401|gb|EFY28161.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635332|gb|EFY32046.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643467|gb|EFY40030.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647097|gb|EFY43598.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648900|gb|EFY45345.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655092|gb|EFY51403.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657695|gb|EFY53963.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664191|gb|EFY60389.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667474|gb|EFY63636.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674722|gb|EFY70814.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675645|gb|EFY71718.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682281|gb|EFY78304.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684884|gb|EFY80882.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716285|gb|EFZ07856.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131647|gb|ADX19077.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323191869|gb|EFZ77117.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199028|gb|EFZ84125.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204272|gb|EFZ89281.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207619|gb|EFZ92566.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211328|gb|EFZ96172.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214730|gb|EFZ99479.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221210|gb|EGA05636.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224049|gb|EGA08342.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230302|gb|EGA14421.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233278|gb|EGA17372.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239315|gb|EGA23365.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242434|gb|EGA26460.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246944|gb|EGA30910.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254123|gb|EGA37943.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255240|gb|EGA39017.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262703|gb|EGA46259.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264013|gb|EGA47521.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269399|gb|EGA52854.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625038|gb|EGE31383.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990145|gb|AEF09128.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 500 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 201/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|114329058|ref|YP_746215.1| transcription elongation factor NusA [Granulibacter bethesdensis CGDNIH1] gi|114317232|gb|ABI63292.1| n utilization substance protein A [Granulibacter bethesdensis CGDNIH1] Length = 512 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 290/519 (55%), Positives = 370/519 (71%), Gaps = 16/519 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + +R ELL +ADAVA EKSIDR+ VL M +IQKA R+ YG DIR I+ +TGD+ Sbjct: 8 TAISRPELLLVADAVAREKSIDREEVLEAMEQAIQKAGRAKYGHEKDIRATIDRKTGDVR 67 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R E VE VEN QI + +AR P I++GG + DPLPP+DFGR+A Q+AKQVI+Q+ Sbjct: 68 LSRWTEAVEVVENEETQIPIHIARKFKPDIELGGHLVDPLPPIDFGRIAAQTAKQVIVQR 127 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VRE ER RQY EFKD+VGEII+G VKR EYGN++VDLG S+ ++RRDE I+RE+ R GDR Sbjct: 128 VREYERRRQYDEFKDRVGEIINGVVKRTEYGNLMVDLGKSEALLRRDELIARESFRNGDR 187 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAVSRDPGSRAK+AV Sbjct: 188 VRAYIYDVREEPRGPQIFLSRTHPNFLAKLFAQEVPEIYDGIIEIKAVSRDPGSRAKMAV 247 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSP +ATFV+NAL PA VTKVV+ Sbjct: 248 ISRDQSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPQAATFVVNALAPAEVTKVVM 307 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GR+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT Sbjct: 308 DEEAGRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTSL 367 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ A++VD++IA LLV EGF VEELA + E++ IEGFDE A E+ RA L Sbjct: 368 FVDALDVDDVIAGLLVTEGFTTVEELAFSPVEELSEIEGFDENVAEELIRRAEVDLTRRA 427 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + K + LGV++E+ I + + VALGE G+KT++DLA + D+L+ + Sbjct: 428 NEMDDKRKALGVTDEIADIETLTPAMLVALGEKGVKTLDDLADLAGDELVEIVGSDA--- 484 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 ++ +I+ AR W E+ + Sbjct: 485 -----------MDEETANEIIMAARAH--WFTDEEQEAD 510 >gi|205354191|ref|YP_002227992.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273972|emb|CAR38977.1| L factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629312|gb|EGE35655.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 500 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 317/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA + + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADIASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|317046740|ref|YP_004114388.1| transcription termination factor NusA [Pantoea sp. At-9b] gi|316948357|gb|ADU67832.1| transcription termination factor NusA [Pantoea sp. At-9b] Length = 495 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 316/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAARFEDEAFNLGDFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ G+II+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGDIITGVVKKVNRDNITLDLGSNAEAVIVREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ I+G DE+T ++ RA+ L + + Sbjct: 362 HLDIDEEFATILVEEGFSSLEELAYVPINELLEIDGLDEDTVEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESRGNQEPAEDLLNLEGLDRALAYRLAAIGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W + Sbjct: 472 -------GLDDEKAGALIMAAR-NICWFGDD 494 >gi|148556720|ref|YP_001264302.1| transcription elongation factor NusA [Sphingomonas wittichii RW1] gi|148501910|gb|ABQ70164.1| NusA antitermination factor [Sphingomonas wittichii RW1] Length = 529 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 288/526 (54%), Positives = 384/526 (73%), Gaps = 14/526 (2%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SANR ELL IADAVA EK IDR++V+ M D+IQ+AAR+ YG +DIR +I+ +TGD+ Sbjct: 5 ISANRAELLAIADAVAREKLIDREIVIEAMEDAIQRAARARYGAENDIRAKIDGKTGDMR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE+V++Y Q+S+ A+ IG + DPLPP++FGR+A Q+AKQVI QK Sbjct: 65 LWRVVEVVEQVDDYFKQVSVADAQKLQKDAAIGDFIVDPLPPIEFGRIAAQAAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY EFKD+ EII+G VKRVE+G+V+VDLG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQYEEFKDRANEIITGVVKRVEFGHVVVDLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+S I VRRE RGPQ+ LSR HP+FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRSLILSVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D SIDPVGACVGM+GSRVQAVV E++ EKIDI+ WSPD+ATFV+NAL+PA V++VV+ Sbjct: 245 ISHDGSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPAQVSRVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F + ++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDILTEADASEKRQKEFLQNSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE +A LLVAEGF +EE+A V++ E+ASIEGFDEE E+Q RA+E LE + Sbjct: 365 FQNELDVDETLAQLLVAEGFGALEEVAYVELDELASIEGFDEELGAELQSRAQEALERRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 +++ R LGV + L +P + + V LG+ GIKT++DLA + D+L+ + Sbjct: 425 AAAREERRSLGVEDALAELPYLTEAMLVTLGKAGIKTLDDLADLATDELIQKKRPEQRRR 484 Query: 482 EKFD------------GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + D G L+ G ++Q +I+ AR W E Sbjct: 485 QNSDRPERGDREENKGGVLAEYGLSEEQGNEIIMAARAH--WFTDE 528 >gi|292486836|ref|YP_003529706.1| transcription elongation protein nusA [Erwinia amylovora CFBP1430] gi|292900766|ref|YP_003540135.1| transcription elongation protein [Erwinia amylovora ATCC 49946] gi|291200614|emb|CBJ47746.1| transcription elongation protein [Erwinia amylovora ATCC 49946] gi|291552253|emb|CBA19290.1| Transcription elongation protein nusA [Erwinia amylovora CFBP1430] gi|312170904|emb|CBX79163.1| Transcription elongation protein nusA [Erwinia amylovora ATCC BAA-2158] Length = 501 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 318/517 (61%), Gaps = 25/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAALYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDID---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 478 -------------GLSNERAGELIMAAR-NICWFGDD 500 >gi|304396347|ref|ZP_07378228.1| transcription termination factor NusA [Pantoea sp. aB] gi|304355856|gb|EFM20222.1| transcription termination factor NusA [Pantoea sp. aB] Length = 495 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 472 -------GLSDEQAGALIMAAR-NICWFGDD 494 >gi|308189112|ref|YP_003933243.1| Transcription elongation protein nusA [Pantoea vagans C9-1] gi|308059622|gb|ADO11794.1| Transcription elongation protein nusA [Pantoea vagans C9-1] Length = 495 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y ++RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV T +I+L AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEIVEEVTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ ++G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q ++I+ AR + W + Sbjct: 472 -------GMSDEQAGALIMAAR-NICWFGDD 494 >gi|289207909|ref|YP_003459975.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix] gi|288943540|gb|ADC71239.1| NusA antitermination factor [Thioalkalivibrio sp. K90mix] Length = 495 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 210/513 (40%), Positives = 324/513 (63%), Gaps = 27/513 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAVA EK +D+D++ + ++ A R +G D+RV I+ E GD FR Sbjct: 2 NKEILLVADAVANEKGVDKDIIFDALESALAMATRKYHGGKMDVRVSIDREEGDYEAFRR 61 Query: 66 LEVVEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ E+ QI L A+ ++P +G V+ +P+ +DFGR+A Q+AKQVI+QK Sbjct: 62 WTVVDDEDPEFESPEYQILLSYAQQKNPDAQVGDVIEEPVEAVDFGRIAAQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + E++D+VG ++ G VKR + VDLGN+ + +I R+ I RE +R D Sbjct: 122 VREAERAKVVEEYQDRVGTLVMGIVKRTDRNGTYVDLGNNAEALIPREHMIPRETVRTND 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ ++R + RGPQ++LSR+ P+F+++LF +EVPE+ I+ + +RDPG RAK+A Sbjct: 182 RLRGYLKEIRPDARGPQLILSRSAPEFLIELFKLEVPEVGQEIIDIMGAARDPGQRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D +DPVGACVGMRGSRVQ+V EL E+IDI+VW + A FVINA+ PA V +V Sbjct: 242 VRSNDPRLDPVGACVGMRGSRVQSVSNELAGERIDIIVWDENPAQFVINAMSPAEVLSIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +++LSLAIGR GQN+RLASQLTGW ++++TEE+ + + + + Sbjct: 302 VDEDKQSMDIAVEEDKLSLAIGRGGQNIRLASQLTGWELNVMTEEQAAEKSEAEAQQLVT 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFM+A++VDE +A +LV EGF+ ++E+A V +E+ +IE FDE+ E++ RA + L Sbjct: 362 FFMEALDVDEEVAGILVQEGFSTLDEVAYVDEAELLAIEEFDEDIVAELRNRASDALLTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I + +E+L S+ G+ + L +G+ TMEDLA + DD++ + Sbjct: 422 AIAGGEN---YQPAEDLLSMDGMTQGVANKLASHGVCTMEDLAEQAADDVVEMT------ 472 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W E Sbjct: 473 -----------GLSTEEASELIMTARAP--WFE 492 >gi|85710531|ref|ZP_01041595.1| transcription elongation factor NusA [Erythrobacter sp. NAP1] gi|85687709|gb|EAQ27714.1| transcription elongation factor NusA [Erythrobacter sp. NAP1] Length = 547 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 282/527 (53%), Positives = 378/527 (71%), Gaps = 16/527 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M ++IQK+AR+ YG +DIR +++P TGD++ Sbjct: 5 ISANKAELLAIANSVASEKMIDKTIVIEAMEEAIQKSARNRYGAENDIRAKLDPNTGDLT 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVEEVE+Y Q+ LK A+ +G + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEEVEDYFKQVDLKQAQKLQDGASVGDFIVDPLPPVDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+ GEII+G +K VE+G+VIV+LG ++GVIRRD+ I RE R G+R Sbjct: 125 VRDAERERQFEEFKDRAGEIITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAARVGER 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ I V R RGPQ+ LSR P FM KLF EVPEIY+GI+++KA +RDPGSRAK+ V Sbjct: 185 VRALITKVERNNRGPQIFLSRAAPDFMRKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV EL+ EKIDI+ WS D+ATFV+NAL+PA V +VVL Sbjct: 245 ISHDSSIDPVGACVGMKGSRVQAVVQELQGEKIDIIPWSEDTATFVVNALQPATVARVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ GRIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TEEE S R K+F ER++ Sbjct: 305 DEEDGRIEVVVPDDQLSLAIGRRGQNVRLASQLTGHQIDIMTEEEASEKRSKEFAERSKM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + ++VDE ++ LLVAEGFA +EE+A V+++E+A+IEGFDEE A E+Q RA E LE + Sbjct: 365 FEEELDVDETLSQLLVAEGFAMLEEVAYVEMAELAAIEGFDEELAEELQSRAIEALERQE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + RELGV + + +P ++ + V LG+ G+KT++D+A + D+L+ Sbjct: 425 EAHRTARRELGVEDAIAELPHLNEAMLVTLGKAGLKTLDDVADLATDELIAKKREAPRRR 484 Query: 482 EKFD--------------GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 D G L G ++Q +I+ AR W E Sbjct: 485 NNTDGPPMRRPQREQDKGGVLGEYGLTEEQGNEIIMAARAH--WFED 529 >gi|91228266|ref|ZP_01262202.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01] gi|254229307|ref|ZP_04922724.1| transcription termination factor NusA domain protein [Vibrio sp. Ex25] gi|262393381|ref|YP_003285235.1| transcription termination protein NusA [Vibrio sp. Ex25] gi|269966859|ref|ZP_06180932.1| N utilization substance protein A [Vibrio alginolyticus 40B] gi|91188143|gb|EAS74445.1| transcription elongation factor NusA [Vibrio alginolyticus 12G01] gi|151938115|gb|EDN56956.1| transcription termination factor NusA domain protein [Vibrio sp. Ex25] gi|262336975|gb|ACY50770.1| transcription termination protein NusA [Vibrio sp. Ex25] gi|269828526|gb|EEZ82787.1| N utilization substance protein A [Vibrio alginolyticus 40B] Length = 495 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 204/509 (40%), Positives = 323/509 (63%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++VEN T +ISL+ A+ D SI++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDDVENPTKEISLEAAQYEDDSIELGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEDIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELIEELRGRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494 >gi|145298043|ref|YP_001140884.1| transcription elongation factor NusA [Aeromonas salmonicida subsp. salmonicida A449] gi|142850815|gb|ABO89136.1| transcription elongation factor nusA [Aeromonas salmonicida subsp. salmonicida A449] Length = 500 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 200/517 (38%), Positives = 315/517 (60%), Gaps = 22/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYETYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + +EN +I+L+ A+ P I +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WVVVADQAAMENPYGEITLEAAQIEQPEIQLGDYVEDQIDSVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK++V Sbjct: 182 IRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++ Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKHQAENDRILTL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F A+++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L Sbjct: 362 FTSALDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDVLTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + + SE+L ++ G+ + AL G+ T+EDLA +DDL E Sbjct: 422 LAKEESLDGVEPSEDLLNLAGLGRDMAYALAARGVGTLEDLAEQGIDDLADIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++ +I+ AR + W +E+ Sbjct: 476 -----------LTAEKAGELIMAAR-NICWFGEEQSE 500 >gi|16762052|ref|NP_457669.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143541|ref|NP_806883.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213621934|ref|ZP_03374717.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213645859|ref|ZP_03375912.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25299784|pir||AI0901 L factor [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504355|emb|CAD07807.1| L factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29139175|gb|AAO70743.1| L factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 500 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 316/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 477 ------------GLTDEKAGELIMAAR-NICWFGDE 499 >gi|259907041|ref|YP_002647397.1| transcription elongation factor NusA [Erwinia pyrifoliae Ep1/96] gi|224962663|emb|CAX54118.1| Transcription elongation protein NusA (N utilization substance protein A) [Erwinia pyrifoliae Ep1/96] gi|283476837|emb|CAY72675.1| Transcription elongation protein nusA [Erwinia pyrifoliae DSM 12163] gi|310766253|gb|ADP11203.1| transcription elongation factor NusA [Erwinia sp. Ejp617] Length = 501 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 317/517 (61%), Gaps = 25/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A D S+ +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAAIYEDESLSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSNTNAEAVIIREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWDLNVMTVDDLQAKHQAEAHAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A LLV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPIKELLEIDGLDEETVEALRDRAKNALT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDID---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 478 -------------GLSDERAGELIMAAR-NICWFGDD 500 >gi|188532503|ref|YP_001906300.1| transcription elongation factor NusA [Erwinia tasmaniensis Et1/99] gi|188027545|emb|CAO95392.1| Transcription elongation protein NusA (N utilization substance protein A) [Erwinia tasmaniensis Et1/99] Length = 501 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 317/517 (61%), Gaps = 25/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A D S +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTQPTREITLEAALYEDESFSLGGFVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ N++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVSRDNISLEVRPNDGSSTNAEAVIIREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 IVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + +++DE A LLV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 362 IDVFTKHLDIDEDFATLLVEEGFSSLEELAYVPINELLEIDGLDEETVEALRDRAKNALT 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + + ++ + + +E+L S+ G++ ++ L G+ T+EDLA VDDL Sbjct: 422 TLALAKEESLGDTQPAEDLLSLEGLERELAFKLAAKGVCTLEDLAEQGVDDLSDIE---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 478 -------------GLSDERAGELIMAAR-NICWFGDD 500 >gi|163802303|ref|ZP_02196197.1| transcription elongation factor NusA [Vibrio sp. AND4] gi|159173832|gb|EDP58646.1| transcription elongation factor NusA [Vibrio sp. AND4] Length = 495 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 203/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VEN T +IS++ A+ D +G V D +P + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVENPTKEISIEAAQYEDADAQLGDFVEDDIPSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V V++DLGN+ + VI RD+ + RENLRPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENLRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 DPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RTDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G +EE E++ RA++ L I + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLDVDGLNEELIEELRTRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFDGLEPAEDLLGLEGLEREMAFKLAAKGVVTLEDLADQGIDDLEGTE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494 >gi|294142061|ref|YP_003558039.1| N utilization substance protein A [Shewanella violacea DSS12] gi|293328530|dbj|BAJ03261.1| N utilization substance protein A [Shewanella violacea DSS12] Length = 499 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 194/516 (37%), Positives = 318/516 (61%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VVE+ +EN +I+L+ A+ + + +G V D + + F R+ Q+AKQVI+QK Sbjct: 62 WQVVEDTGEPLENPYGEITLEAAQYENAELQVGDFVEDDMESVTFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I+G VK+ +V+VDLG + D V+ +++ ISREN RPGD Sbjct: 122 VREAERAQVVEQFQDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++ ++ VR E RG Q+ ++RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RIRALLFSVRPEARGAQLFMTRTQPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPADVASIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + Sbjct: 302 VDEDTHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWVLNVMTVEDLQAKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ + Sbjct: 362 LFVSSLDVDEDFAQILADEGFTSLEEVAYVPSAELMEIDGFDEDTVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLEKHLAFVFASKGVITLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499 >gi|320540176|ref|ZP_08039831.1| putative transcription termination/antitermination L factor [Serratia symbiotica str. Tucson] gi|320029842|gb|EFW11866.1| putative transcription termination/antitermination L factor [Serratia symbiotica str. Tucson] Length = 502 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 200/517 (38%), Positives = 311/517 (60%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ A+ +P ++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVVVDEVTQPTREITLEAAQYEEPDTELGGYIEDQIDSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F++ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFREHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVSRSSPEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ + Q + + Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQVKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+T ++ RAR Sbjct: 362 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRARAAS 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + +E+L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQKESLGGQEPAEDLLNLPGLERSMAFKLAARGVGTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G Q +I+ +R + W Sbjct: 479 --------------GLSNQQAGELIMASR-NICWFGD 500 >gi|28899231|ref|NP_798836.1| transcription elongation factor NusA [Vibrio parahaemolyticus RIMD 2210633] gi|153838305|ref|ZP_01990972.1| transcription elongation factor NusA [Vibrio parahaemolyticus AQ3810] gi|260362206|ref|ZP_05775190.1| transcription termination factor NusA [Vibrio parahaemolyticus K5030] gi|260879074|ref|ZP_05891429.1| transcription termination factor NusA [Vibrio parahaemolyticus AN-5034] gi|260897745|ref|ZP_05906241.1| transcription termination factor NusA [Vibrio parahaemolyticus Peru-466] gi|260900801|ref|ZP_05909196.1| transcription termination factor NusA [Vibrio parahaemolyticus AQ4037] gi|28807455|dbj|BAC60720.1| N utilization substance protein A [Vibrio parahaemolyticus RIMD 2210633] gi|149748294|gb|EDM59153.1| transcription elongation factor NusA [Vibrio parahaemolyticus AQ3810] gi|308088968|gb|EFO38663.1| transcription termination factor NusA [Vibrio parahaemolyticus Peru-466] gi|308089567|gb|EFO39262.1| transcription termination factor NusA [Vibrio parahaemolyticus AN-5034] gi|308108198|gb|EFO45738.1| transcription termination factor NusA [Vibrio parahaemolyticus AQ4037] gi|308111470|gb|EFO49010.1| transcription termination factor NusA [Vibrio parahaemolyticus K5030] gi|328474233|gb|EGF45038.1| transcription elongation factor NusA [Vibrio parahaemolyticus 10329] Length = 495 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 201/509 (39%), Positives = 322/509 (63%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ +R Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTYRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++VE+ T +ISL+ A+ D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDQVESPTKEISLEAAQYEDDSVELGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLEELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ I+G +EE E++GRA++ L I + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEIAYVPVNELLEIDGLNEELVEELRGRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +++L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPADDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494 >gi|330447378|ref|ZP_08311027.1| transcription termination/antitermination L factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491569|dbj|GAA05524.1| transcription termination/antitermination L factor [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 495 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 199/511 (38%), Positives = 312/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVTIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VEEV T +I+L+ A+ +P + G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVEEVTQPTLEITLEAAQFENPELVEGDYVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+I+G VK+V VI+DLGN+ + VI+RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +SE+ +EG DE+ +++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFTTLEEIAYVPVSELMEVEGLDEDLIEQLRSRAKAALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ L GI T+EDLA DDL Sbjct: 422 EESLDGAEPAEDLLGLEGLERELAFKLAAKGICTLEDLADQGTDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR + W E Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494 >gi|71908071|ref|YP_285658.1| transcription elongation factor NusA [Dechloromonas aromatica RCB] gi|71847692|gb|AAZ47188.1| NusA antitermination factor [Dechloromonas aromatica RCB] Length = 490 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 330/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +++V + ++ A + +D+R+ I+ +TG FR + Sbjct: 4 EILLLVDALAREKNVSKEIVFGALELALASATKKRINDEADVRISIDRDTGSFESFRRWQ 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E N +I L A+ DP I+ G + +PL P+DFGR+ Q+AKQVI+QK+R+A Sbjct: 64 VVPDNEYVNEFLEIPLSDAQKDDPEIEPGDSLEEPLEPIDFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++SGT+KR+E GN I++ G + ++ RD+ I +ENLR GDRV++Y Sbjct: 124 EREQILADFLGRGEHVVSGTIKRMERGNAIIEAGKIEAMLPRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF MEVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRNARGPQIILSRTAPEFVIKLFDMEVPEISDGLMELKACARDPGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G CVG+RGSRV AV E+ E IDIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 PRVDPIGTCVGLRGSRVTAVRNEIGGENIDIVLWSADPAQFVIGALSPAEVSSIVVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L++AIGR GQNVRLAS+LTGWTI+++T++E + + +F E FM+ Sbjct: 304 HAMDVVVDEDNLAIAIGRNGQNVRLASELTGWTINLMTQDESAKKSEAEFAETRVVFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +++DE +A LL+ EGF+ +EE+A V ++E+ IEG DEE E++ RAR L I + Sbjct: 364 LDIDEELADLLIEEGFSTLEEVAYVPLAEMLEIEGLDEEIVNELRNRARNVLLTEAIATE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ VSE+L + G+ ++ L + +KT +DLA +VD+L + Sbjct: 424 EKLE--SVSEDLIGLEGMSKELAAKLAGHDVKTRDDLAELAVDELTEMT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ + +I+ AR W E Sbjct: 471 ------GIDDERAKDLILKARAH--WFE 490 >gi|260771174|ref|ZP_05880101.1| transcription termination protein NusA [Vibrio furnissii CIP 102972] gi|260613771|gb|EEX38963.1| transcription termination protein NusA [Vibrio furnissii CIP 102972] gi|315179220|gb|ADT86134.1| transcription elongation factor NusA [Vibrio furnissii NCTC 11218] Length = 495 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 320/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ + FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFNTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN T +ISL+ A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVENPTKEISLEAAVYDDESVKLGDFIEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++I+G VK+V VI+DLG N++ VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLITGVVKKVNRDTVILDLGSNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELCGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V + E+ ++G DE+ E++ RA++ L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPVHELLEVDGLDEDLVEELRTRAKDALTTIALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SYEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494 >gi|254507512|ref|ZP_05119646.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16] gi|219549582|gb|EED26573.1| transcription elongation factor NusA [Vibrio parahaemolyticus 16] Length = 495 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 201/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQAAIDAFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494 >gi|88860547|ref|ZP_01135185.1| transcription elongation factor NusA [Pseudoalteromonas tunicata D2] gi|88817745|gb|EAR27562.1| transcription elongation factor NusA [Pseudoalteromonas tunicata D2] Length = 498 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 190/513 (37%), Positives = 318/513 (61%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TG FR + Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGDIDVRVCIDRKTGAYDTFRRWQ 63 Query: 68 VVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VE+ +EN +I+++ A DP+ +G + + + + F R+ Q+AKQVI+QKVR Sbjct: 64 IVEDREGGLENPYREITIEAAVYDDPNAKLGDFIEEQIESIKFDRITTQTAKQVIVQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER ++D+ GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR+ Sbjct: 124 EAERALIVEAYQDQEGEMVTGVVKKASREAIVLDLGNNAEAVIYRDDMLPRENFRPGDRI 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++ +RDPGSRAK+AV Sbjct: 184 RGLLYSVKPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQAV TEL E+IDIV++ + A FVINA+ PA V +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLYDDNPAQFVINAMAPAEVASIVMD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ + Q++ + + F Sbjct: 304 EDSRSMDIAVESDNLAQAIGRNGQNVRLASQLTGWELNVMTVDDMNKKNQEESGKAIKVF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + +++DE A LL+ EGF+ +EE+A V SE I+G DE+T E++ RA+ L + Sbjct: 364 TEGLDIDEDFAQLLIDEGFSTLEEVAYVPTSEFLEIDGIDEDTVEELRARAKASLTTQAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + + +L ++ G++ + L G+ T+EDLA +D+L+ +E Sbjct: 424 ASEESLEGATPAADLLALEGLERHLAFVLASKGVVTLEDLAEQGIDELVDITE------- 476 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 477 ----------LSSEKAGELIMAAR-NICWFGDE 498 >gi|311695959|gb|ADP98832.1| transcription elongation factor NusA [marine bacterium HP15] Length = 497 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 208/512 (40%), Positives = 325/512 (63%), Gaps = 23/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ +TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFEDEEADIRVSIDRKTGEYETFRRW 63 Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ +++L+ A + DP++ G + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTLQEAEEIDPALKPGDIHEEKIESEAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+ Sbjct: 124 AERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREFLIPRETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 SLLLEIRTDHRGPQLILSRTSPQMLIELFRIEVPEIAEDLIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE ++++++ + F Sbjct: 304 DRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYSRLVEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L + Sbjct: 364 GNLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + +E+L + G+D + L G++TMEDLA SV DLL Sbjct: 424 SEEALEGAEPAEDLLGMDGMDRSLAFKLAGMGVRTMEDLAEQSVGDLLEIE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 --------GMDEERAGQLIMTARAP--WFEDQ 496 >gi|329295928|ref|ZP_08253264.1| transcription elongation factor NusA [Plautia stali symbiont] Length = 495 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 314/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A R Y D+RV I+ +GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATRKKYEQEIDVRVSIDRRSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T + +L+ AR D + ++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVVVEEVTQPTRETTLEAARFEDEAFNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGNNAEAVIVREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLAS L+ W ++++T ++ Q + + F + Sbjct: 302 NHTMDIAVEAGNLAQAIGRNGQNVRLASLLSSWELNVMTVDDLQAKHQAEAHAAIDMFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFSSLEELAYVPINELLEIDGLDEETIEALRERAKNALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G+D + L G+ T+EDLA VDDL Sbjct: 422 EESLGNQEPAEDLLNLEGLDRALAYRLASKGVCTLEDLAEQGVDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W + Sbjct: 472 -------GLDDEKAGALIMVAR-NICWFGDD 494 >gi|330830889|ref|YP_004393841.1| transcription elongation factor NusA [Aeromonas veronii B565] gi|328806025|gb|AEB51224.1| transcription elongation factor NusA [Aeromonas veronii B565] Length = 500 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 202/517 (39%), Positives = 314/517 (60%), Gaps = 22/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WVVIADQAAMENPYAEITLEAAQIDQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV Sbjct: 182 VRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++ Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRIMNL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L Sbjct: 362 FTSTLDIDDDFAGLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + SEEL ++ G+ ++ AL G+ T+EDLA +DDL Sbjct: 422 LAKEESFDGVEPSEELLNLNGLSRELAYALAGRGVGTLEDLAEQGIDDLADIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G ++ +I+ AR + W +E+ Sbjct: 475 ----------GLTAEKAGELIMAAR-NICWFGEEQSE 500 >gi|269103408|ref|ZP_06156105.1| transcription termination protein NusA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163306|gb|EEZ41802.1| transcription termination protein NusA [Photobacterium damselae subsp. damselae CIP 102761] Length = 494 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 317/511 (62%), Gaps = 20/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKYEAEIDVRVTIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + V+EV T +I+L+ A+ D ++++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVDEVTQPTLEITLEAAQFEDETVELGDFVEDEIQSVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F D G++I+G VK+V VIVDLGN+ + VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVAQFVDNEGDLITGVVKKVNRDAVIVDLGNNAEAVIGRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P + +LF +EVPEI ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPAMLSELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V+ +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVSSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E F + Sbjct: 302 SHTMDIAVEKANLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHQEEAQESIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V ++E+ +EG +EET E++ RA+E L I + Sbjct: 362 YLDIDEDFASVLVTEGFTTLEEIAYVPVNELLEVEGLNEETIDELRNRAKEALTTIALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ L GI T+EDLA DDL+ Sbjct: 422 EESL-DAEPAEDLLALEGLERELAFKLAAKGILTLEDLADQGTDDLIDIE---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W E Sbjct: 471 -------GVDEAKAGELIMAAR-NICWFGDE 493 >gi|53804603|ref|YP_113778.1| transcription elongation factor NusA [Methylococcus capsulatus str. Bath] gi|53758364|gb|AAU92655.1| N utilization substance protein A [Methylococcus capsulatus str. Bath] Length = 499 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 212/516 (41%), Positives = 322/516 (62%), Gaps = 27/516 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + D V+ EK I+++V+ S + ++++ A + D+RV I+ +TGD FR Sbjct: 3 NKEILLVVDVVSNEKDIEKEVIFSAIEEALRTATIKRHDGRYDVRVSIDRKTGDYETFRR 62 Query: 66 LEVVEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +VVE VE +ISL+ AR P I +G V +P ++FGR+A Q+AKQVI Sbjct: 63 WQVVEPREEFGNGVEFPEREISLEEARKTHPGITVGEFVEEPFDSIEFGRIAAQTAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177 +QKVREAER + ++ +VGE+++G +KR+E GNV +DLG + + I RDE I RE++R Sbjct: 123 VQKVREAERRKIADAYQSRVGELVTGVIKRIERGNVFLDLGGNVEAFIPRDEMIPRESVR 182 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ + VR + RGPQ+ +SRT P+ ++ LF +EVPE+ ++++K +RDPG RA Sbjct: 183 SGDRLRGILSAVRPDARGPQLFVSRTAPELLIALFRLEVPEVSENLIEIKGAARDPGVRA 242 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S+D +DPVGACVGMRGSRVQAV EL E+IDI++W+ + A FV+NA+ PA + Sbjct: 243 KVAVKSNDPRLDPVGACVGMRGSRVQAVSNELAGERIDIILWNENEAQFVVNAMSPAEIV 302 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V E LS AIGR GQNVRLAS+LTGWT+++++ + Q++ Sbjct: 303 SIVVDEDRHSMDIAVADENLSQAIGRGGQNVRLASELTGWTLNVMSSTQADAKTQEETRR 362 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q F++ + VD +A +LV EGF+ VEELA V E+ IE FDE+ E++ RAR+ L Sbjct: 363 LIQTFVEQLGVDGEVAEILVREGFSSVEELAYVPTKELLEIEEFDEDIVEELRNRARDAL 422 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++K+ E+ SE+L + G+D ++ L +GI+T+EDLA +V DLL Sbjct: 423 LIKAIASEEKLEEVEPSEDLLELEGMDRELAYRLARHGIRTLEDLADQAVPDLLDIE--- 479 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +++ +I+ AR W Sbjct: 480 --------------DMEEEKAAELIMKARAS--WFS 499 >gi|260775410|ref|ZP_05884307.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC BAA-450] gi|260608591|gb|EEX34756.1| transcription termination protein NusA [Vibrio coralliilyticus ATCC BAA-450] Length = 495 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 203/509 (39%), Positives = 322/509 (63%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKGVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ T +ISL+ A+ D +I+IG V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVESPTKEISLEAAQFDDETIEIGDYVEDEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETIVLDLGNNAEAVILRDDQLPRENHRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YRVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA++ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSSLEEVAYVPVNELLEVDGLDEDLVEELRNRAKDALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W ++ Sbjct: 472 -----GLTEEYAGELIMAAR-NICWFGED 494 >gi|149375756|ref|ZP_01893524.1| N utilization substance protein A [Marinobacter algicola DG893] gi|149359881|gb|EDM48337.1| N utilization substance protein A [Marinobacter algicola DG893] Length = 497 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 210/512 (41%), Positives = 325/512 (63%), Gaps = 23/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYDDEEADIRVSIDRRTGEYETFRRW 63 Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ +++++ A D D S+ G + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTMQEAEDIDKSLQPGDTHEEKVESVAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++D+VGE++SGTVK+V NVIVDLG N++ ++ R+ I RE R GDRV+ Sbjct: 124 AERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREHLIPRETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + ++R + RGPQ++LSRT PQ +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 SLLQEIRTDHRGPQLILSRTDPQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV V ++ L+ AIGR GQNVRLA+ LTGWT++++TEEE +++++N + F Sbjct: 304 DRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYNSLLEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +L+ EGF +EE+A + + E+ +I+GFDEET E++ RA++ L + Sbjct: 364 GNLDVDEEFAGVLIEEGFTSIEEVAYIPMEEMLAIDGFDEETVTELRRRAKDALLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + +E+L ++ G+D + L GI+TMEDLA SVDDLL Sbjct: 424 SEEALEGAEPAEDLLAMDGMDRGLAFKLAGMGIRTMEDLAEQSVDDLLDIE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 --------GMEEERAGQLIMAARAP--WFEDQ 496 >gi|117619535|ref|YP_857795.1| transcription elongation factor NusA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560942|gb|ABK37890.1| transcription elongation protein NusA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 500 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 202/517 (39%), Positives = 314/517 (60%), Gaps = 22/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RVEI+ +TGD +R Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGEIEVRVEIDRKTGDYDTYRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + +EN +I+L+ A+ P I IG V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WVVIADQAAMENPYAEITLEAAQIEQPEIQIGEYVEDQIDSVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +FKDK G IISG VK+ NVI+DLG N++ VI RD+ + RE RPGDR Sbjct: 122 REAERSQVVDQFKDKEGTIISGVVKKSNRDNVILDLGSNAEAVIFRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y VR E RG Q+ +SR+ P F+ +LF +EVPEI ++++ +RDPGSRAK+AV Sbjct: 182 IRGLLYAVRPEARGSQLFVSRSSPDFLKELFRIEVPEIGEEMIEIMGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDP+GAC+GMRG+RVQAV EL E+ DIV++ + A +VINA+ PA V +++ Sbjct: 242 KTNDRRIDPIGACIGMRGARVQAVSAELSGERADIVLYDDNPAQYVINAMAPADVASIIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVEAANLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRAKHQAENDRILTL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++D+ A LL+ EGF+ +EE+A V ++E+ +I+G DE+ E++ RA++ L Sbjct: 362 FTSTLDIDDDFASLLMEEGFSTLEEIAFVPVNELLAIDGLDEDMVEELRKRAKDALTTKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + SEEL ++ G+ ++ AL GI T+EDLA +DDL Sbjct: 422 LAKEESFEGVEPSEELLNLNGLGREMAYALAARGIGTLEDLAEQGIDDLADIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G ++ +I+ AR + W +E+ Sbjct: 475 ----------GLTAEKAGELIMAAR-NICWFGEEQSE 500 >gi|294011603|ref|YP_003545063.1| N utilization substance protein A [Sphingobium japonicum UT26S] gi|292674933|dbj|BAI96451.1| N utilization substance protein A [Sphingobium japonicum UT26S] Length = 523 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 280/520 (53%), Positives = 384/520 (73%), Gaps = 7/520 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEVVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L + Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + E G L+ G ++Q +I+ AR W E E+ Sbjct: 485 RENKEEDKGGILAEYGLTEEQGNEIIMAARAH--WFEGEE 522 >gi|15599939|ref|NP_253433.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAO1] gi|107103844|ref|ZP_01367762.1| hypothetical protein PaerPA_01004915 [Pseudomonas aeruginosa PACS2] gi|116052892|ref|YP_793209.1| transcription elongation factor NusA [Pseudomonas aeruginosa UCBPP-PA14] gi|152989172|ref|YP_001350787.1| transcription elongation factor NusA [Pseudomonas aeruginosa PA7] gi|218893840|ref|YP_002442709.1| transcription elongation factor NusA [Pseudomonas aeruginosa LESB58] gi|254238519|ref|ZP_04931842.1| N utilization substance protein A [Pseudomonas aeruginosa C3719] gi|254244353|ref|ZP_04937675.1| N utilization substance protein A [Pseudomonas aeruginosa 2192] gi|296391572|ref|ZP_06881047.1| transcription elongation factor NusA [Pseudomonas aeruginosa PAb1] gi|313109726|ref|ZP_07795666.1| N utilization substance protein A [Pseudomonas aeruginosa 39016] gi|9951007|gb|AAG08131.1|AE004888_6 N utilization substance protein A [Pseudomonas aeruginosa PAO1] gi|115588113|gb|ABJ14128.1| N utilization substance protein A [Pseudomonas aeruginosa UCBPP-PA14] gi|126170450|gb|EAZ55961.1| N utilization substance protein A [Pseudomonas aeruginosa C3719] gi|126197731|gb|EAZ61794.1| N utilization substance protein A [Pseudomonas aeruginosa 2192] gi|150964330|gb|ABR86355.1| N utilization substance protein A [Pseudomonas aeruginosa PA7] gi|218774068|emb|CAW29884.1| N utilization substance protein A [Pseudomonas aeruginosa LESB58] gi|310882168|gb|EFQ40762.1| N utilization substance protein A [Pseudomonas aeruginosa 39016] Length = 493 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVEINRHNGSYETFRRWH 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ ++ +I+++ +++ P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVADEDYQDPATEITVEDVQEQKPGAKVGEVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++KVGEIISGTVK+V NVIVDLGN+ + ++ RD+ I RE R G RV++ Sbjct: 124 ERAQVVDAYREKVGEIISGTVKKVTRDNVIVDLGNNAEALLARDQIIPRETFRVGTRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI ++ V A +RDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLVLSRTAPEMLIELFRIEVPEIAEQLIDVMAAARDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDDNPAQFVINAMAPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+ Sbjct: 304 THTMDIAVAEDNLAQAIGRSGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDILQRFVD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I Sbjct: 364 ELDVDEELAQVLVEEGFTTLEEIAYVPMEEMLSIDGFDEDIVNELRSRAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+ ++ + L G+ T EDLA S+DDLL Sbjct: 424 EEKLADAQPAEDLLSLDGMSKELALDLALRGVTTREDLAEQSIDDLLDID---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +I+ AR W E Sbjct: 474 -------GMDEERAGKLIMAARAH--WFE 493 >gi|83595108|ref|YP_428860.1| transcription elongation factor NusA [Rhodospirillum rubrum ATCC 11170] gi|83578022|gb|ABC24573.1| NusA antitermination factor [Rhodospirillum rubrum ATCC 11170] Length = 516 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 285/521 (54%), Positives = 385/521 (73%), Gaps = 18/521 (3%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 V +R EL+Q+AD VA +KSI+R+ V + M +IQKA RS YG DIR I+ +TG+I Sbjct: 5 VGMSRPELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L R +EVVEEVEN QI+L A+ + I++G + DPLPP+DFGR+A Q+AKQVI+QK Sbjct: 65 LARYIEVVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ E+KD++GEII+G VKRVE+GNVIVD+G ++ ++RRDE I RE+ + GDR Sbjct: 125 VRDAERERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGRAEALLRRDEVIPREHFKNGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++YI DVR+E RGPQ+ LSRTH QFM KLF EVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 185 IRAYIMDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D +IDPVGACVGMRGSRVQAVV EL+ EKIDI+ W+ D ATFV+NAL PA V KVVL Sbjct: 245 LSNDHAIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVL 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP EQLSLAIGRRGQNVRLAS+LTGW IDI+TE E+S RQ +F RTQ Sbjct: 305 DEEANRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQA 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++A++VD++IAHLLV EGF VE++A V I+E++ IEGFDE+ A E+Q RA+ +L + Sbjct: 365 FIEALDVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 +++ +ELGV +E+ I G+ + + VALGE G+KT++DL + D+L+ Sbjct: 425 RLNEERRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVG------ 478 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 G +D ++I+ AR W + + ++ Sbjct: 479 ----------GLNEDDANAVIMAARAH--WFGEAGDSADDA 507 >gi|27365056|ref|NP_760584.1| transcription elongation factor NusA [Vibrio vulnificus CMCP6] gi|37680893|ref|NP_935502.1| transcription elongation factor NusA [Vibrio vulnificus YJ016] gi|320155440|ref|YP_004187819.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O] gi|27361202|gb|AAO10111.1| Transcription termination protein NusA [Vibrio vulnificus CMCP6] gi|37199642|dbj|BAC95473.1| n utilization substance protein A [Vibrio vulnificus YJ016] gi|319930752|gb|ADV85616.1| transcription termination protein NusA [Vibrio vulnificus MO6-24/O] Length = 495 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG+ FR Sbjct: 4 EILAVAEAVSNEKAVPRERIFEALEIALATSTKKKYEIEIDVRVAIDRKTGEFVTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN T +IS + A D S+ +G + + + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVDEVENPTKEISFEAANYDDESVQLGDFIEEEIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDR 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLASQLTGW ++++T E+ ++ FM+ + Sbjct: 304 SMDIAVEAGNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLQKKHAEESQASIDNFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ +EG DE+ E++ RA++ L I + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVEGLDEDLIEELRSRAKDALTTIALAREE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +E+L ++ G++ ++ L G+ ++EDLA +DDL G Sbjct: 424 SFEGVEPAEDLLNLEGLEREMAFKLAAKGVASLEDLADQGIDDLEGID------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGQLIMAAR-NICWFGEE 494 >gi|157376522|ref|YP_001475122.1| transcription elongation factor NusA [Shewanella sediminis HAW-EB3] gi|157318896|gb|ABV37994.1| NusA antitermination factor [Shewanella sediminis HAW-EB3] Length = 499 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 315/516 (61%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ +TG FR Sbjct: 2 NKEILLVTEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVEIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDTGEPLENPFSEITLEAAQFEEPEIQLGEYIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +FKDK GE+I+G VK+ +V+VDLG N+D V+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFKDKEGELITGVVKKSNRESVVVDLGSNADAVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ ++ VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLFAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++ VDE A +L EGF +EE+A V SE+ I+GFDE+ ++ RA+ + Sbjct: 362 LFVTSLEVDEDFAQVLADEGFTSLEEVAYVPASELMDIDGFDEDIVETLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAFVFASKGVITLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499 >gi|270265058|ref|ZP_06193321.1| transcription elongation protein NusA [Serratia odorifera 4Rx13] gi|270040992|gb|EFA14093.1| transcription elongation protein NusA [Serratia odorifera 4Rx13] Length = 502 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L Sbjct: 362 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 479 --------------GLSDEQAGELIMAAR-NICWFGD 500 >gi|157368735|ref|YP_001476724.1| transcription elongation factor NusA [Serratia proteamaculans 568] gi|157320499|gb|ABV39596.1| NusA antitermination factor [Serratia proteamaculans 568] Length = 502 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 197/517 (38%), Positives = 310/517 (59%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEEPGIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER F+ GEI++G VK+V ++ +DLG N++ VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDAFRQHEGEIVTGVVKKVNRDSIALDLGSNAEAVIGREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYAVRPEARGAQLFVSRSSAEMLKELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 302 NCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRDDDRWELNVMTADDLQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ I+G DE+ ++ RA+ L Sbjct: 362 AIDTFTKHLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDMVEALRDRAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + + +++L ++PG++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQEESLGDQKPADDLLNLPGLERSMAFKLAARGVCTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 479 --------------GLSDEQAGELIMAAR-NICWFGD 500 >gi|323491074|ref|ZP_08096266.1| transcription elongation factor NusA [Vibrio brasiliensis LMG 20546] gi|323314738|gb|EGA67810.1| transcription elongation factor NusA [Vibrio brasiliensis LMG 20546] Length = 495 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 203/510 (39%), Positives = 319/510 (62%), Gaps = 19/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIEGFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRNRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +E+L + G++ ++ L G+ T+EDLA +DDL G Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR + W E+ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGDEE 495 >gi|167625060|ref|YP_001675354.1| transcription elongation factor NusA [Shewanella halifaxensis HAW-EB4] gi|167355082|gb|ABZ77695.1| NusA antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 499 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIDSVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESVKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++GRA+ + Sbjct: 362 LFIQALDVDEDFAQLLSDEGFTSLEEIAYVPESELLEIDGFDEDIVESLRGRAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|329896244|ref|ZP_08271422.1| Transcription termination protein NusA [gamma proteobacterium IMCC3088] gi|328921915|gb|EGG29282.1| Transcription termination protein NusA [gamma proteobacterium IMCC3088] Length = 496 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 328/511 (64%), Gaps = 22/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ A + Y SDI V IN +TGD R Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIELALATATKKRYDEDSDIHVTINRKTGDYVTVRRWL 63 Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E Q++ + A ++DPS+ G V + + + FGR+A Q+AKQVI+Q+VREA Sbjct: 64 VVPDDELALLGTQLTTEEAIEKDPSLVPGDVFEETVENVGFGRIAAQTAKQVIVQRVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++ +VGE+++G+VK+V N+IVDLGN+ +G++ R + RE R DR+++ Sbjct: 124 ERAQIVDQYRGRVGELVAGSVKKVTRDNIIVDLGNNAEGLLPRGNLVGRETFRVNDRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR+ + +++LF +EVPEI G++Q++A +RDPGSRAK+AV ++ Sbjct: 184 ILTEISTEIRGPQLILSRSCSEMLIELFRIEVPEIAEGVIQIRAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ EE ++ + + Q F++ Sbjct: 304 THTMDVAVSEDNLAQAIGRSGQNVRLASELTGWMINVMSTEEAQEKQEAEVGQVLQLFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE + E++ RA++ L + I Sbjct: 364 RLDVDEDVAEVLVEEGFTTLEEVAYVPLEEMMAIEGFDEEISEELRARAKDALLTMAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +++L ++ G+D + L GI TMEDLA VDDL+ E Sbjct: 424 EEQLGANEPADDLLNMEGMDRHLAFILASRGIVTMEDLAEQGVDDLMEIPE--------- 474 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ S+I+ AR W +E Sbjct: 475 --------MDEERAGSLIMTARAP--WFAEE 495 >gi|120597899|ref|YP_962473.1| transcription elongation factor NusA [Shewanella sp. W3-18-1] gi|146293929|ref|YP_001184353.1| transcription elongation factor NusA [Shewanella putrefaciens CN-32] gi|120557992|gb|ABM23919.1| NusA antitermination factor [Shewanella sp. W3-18-1] gi|145565619|gb|ABP76554.1| NusA antitermination factor [Shewanella putrefaciens CN-32] Length = 499 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 204/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFINSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + S+EL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGTLIMAAR-NICWFGEE 498 >gi|229525295|ref|ZP_04414700.1| transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] gi|229338876|gb|EEO03893.1| transcription termination protein NusA [Vibrio cholerae bv. albensis VL426] Length = 495 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 202/509 (39%), Positives = 316/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFDAASFDDDSVQLGDYIEDQIDSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|213052982|ref|ZP_03345860.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 495 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 199/512 (38%), Positives = 315/512 (61%), Gaps = 24/512 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR +V Sbjct: 1 MAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIV 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 61 EEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 120 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVK 183 +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ Sbjct: 121 VVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIR 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV + Sbjct: 181 GVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DE Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F Sbjct: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFT 360 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 361 KYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQD 420 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 421 QEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE--------- 471 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 472 --------GLTDEKAGELIMAAR-NICWFGDE 494 >gi|163752374|ref|ZP_02159569.1| transcription elongation factor NusA [Shewanella benthica KT99] gi|161327746|gb|EDP98933.1| transcription elongation factor NusA [Shewanella benthica KT99] Length = 499 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 317/516 (61%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + + ++RVEI+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKHVGEIEVRVEIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VVE+ +EN +I+L+ A+ DP + +G V D + + F R+ Q+AKQVI+QK Sbjct: 62 WQVVEDTGEPLENPYGEITLEAAQYEDPELQVGDYVEDDMESVTFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + FKD+ GE+I+G VK+ +V+VDLG + D V+ +++ ISREN RPGD Sbjct: 122 VREAERAQVVELFKDREGELITGIVKKSNRESVVVDLGGNADAVLFKEDLISRENFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+++ ++ VR E RG Q+ ++RT + +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RIRALLFSVRPEARGAQLFMTRTKSEMLIELFRIEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V +V Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMAPAEVASIV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + Sbjct: 302 VDEDSHSMDIAVEADSLAQAIGRNGQNVRLAAQLSGWELNVMTVEDLQKKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++ VDE A +L EGF +EE+A V +E+ I+GFDE+T ++ RA+ + Sbjct: 362 LFVASLEVDEDFAQVLADEGFTSLEEVAYVPAAELMEIDGFDEDTVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + G+ T+E+LA +DDL+ E Sbjct: 422 ALATEEALDGAAPSEDLLALEGLDKHLAFVFASKGVITLENLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGDEE 499 >gi|307293340|ref|ZP_07573186.1| transcription termination factor NusA [Sphingobium chlorophenolicum L-1] gi|306881406|gb|EFN12622.1| transcription termination factor NusA [Sphingobium chlorophenolicum L-1] Length = 523 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 280/520 (53%), Positives = 384/520 (73%), Gaps = 7/520 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ ELL IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++PETGD+ Sbjct: 5 ISANKAELLAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPETGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE V++Y Q+ L+ A+ IG + DPLPP+D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVEAVDDYFKQVDLRQAQKLKKDAVIGDFIVDPLPPIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQ+ EFKD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQHEEFKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S I +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++++KA +RDPGSRAK+ V Sbjct: 185 IRSVILNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVIEIKAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEL 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A+IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVGVEELAAIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL-----LGWSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L + Sbjct: 425 AAAREERQALGVEDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + E G L+ G ++Q +I+ AR W E E+ Sbjct: 485 RENKEEDKGGILAEYGLSEEQGNEIIMAARAH--WFEGEE 522 >gi|15640662|ref|NP_230291.1| transcription elongation factor NusA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121728410|ref|ZP_01681438.1| N utilization substance protein A [Vibrio cholerae V52] gi|147674353|ref|YP_001216136.1| transcription elongation factor NusA [Vibrio cholerae O395] gi|153801994|ref|ZP_01956580.1| N utilization substance protein A [Vibrio cholerae MZO-3] gi|153818700|ref|ZP_01971367.1| N utilization substance protein A [Vibrio cholerae NCTC 8457] gi|153822531|ref|ZP_01975198.1| N utilization substance protein A [Vibrio cholerae B33] gi|153829178|ref|ZP_01981845.1| N utilization substance protein A [Vibrio cholerae 623-39] gi|227080823|ref|YP_002809374.1| N utilization substance protein A [Vibrio cholerae M66-2] gi|229505736|ref|ZP_04395246.1| transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229509231|ref|ZP_04398716.1| transcription termination protein NusA [Vibrio cholerae B33] gi|229519560|ref|ZP_04409003.1| transcription termination protein NusA [Vibrio cholerae RC9] gi|229608847|ref|YP_002879495.1| transcription elongation factor NusA [Vibrio cholerae MJ-1236] gi|254850876|ref|ZP_05240226.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744141|ref|ZP_05418094.1| transcription termination protein NusA [Vibrio cholera CIRS 101] gi|262156117|ref|ZP_06029236.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1] gi|262169941|ref|ZP_06037631.1| transcription termination protein NusA [Vibrio cholerae RC27] gi|297580768|ref|ZP_06942694.1| N utilization substance protein A [Vibrio cholerae RC385] gi|298500758|ref|ZP_07010561.1| transcription elongation factor NusA [Vibrio cholerae MAK 757] gi|9655078|gb|AAF93808.1| N utilization substance protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629344|gb|EAX61776.1| N utilization substance protein A [Vibrio cholerae V52] gi|124122453|gb|EAY41196.1| N utilization substance protein A [Vibrio cholerae MZO-3] gi|126510780|gb|EAZ73374.1| N utilization substance protein A [Vibrio cholerae NCTC 8457] gi|126519949|gb|EAZ77172.1| N utilization substance protein A [Vibrio cholerae B33] gi|146316236|gb|ABQ20775.1| N utilization substance protein A [Vibrio cholerae O395] gi|148875367|gb|EDL73502.1| N utilization substance protein A [Vibrio cholerae 623-39] gi|227008711|gb|ACP04923.1| N utilization substance protein A [Vibrio cholerae M66-2] gi|227012467|gb|ACP08677.1| N utilization substance protein A [Vibrio cholerae O395] gi|229344249|gb|EEO09224.1| transcription termination protein NusA [Vibrio cholerae RC9] gi|229353803|gb|EEO18739.1| transcription termination protein NusA [Vibrio cholerae B33] gi|229357959|gb|EEO22876.1| transcription termination protein NusA [Vibrio cholerae BX 330286] gi|229371502|gb|ACQ61925.1| transcription termination protein NusA [Vibrio cholerae MJ-1236] gi|254846581|gb|EET24995.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255738081|gb|EET93473.1| transcription termination protein NusA [Vibrio cholera CIRS 101] gi|262021675|gb|EEY40386.1| transcription termination protein NusA [Vibrio cholerae RC27] gi|262030153|gb|EEY48798.1| transcription termination protein NusA [Vibrio cholerae INDRE 91/1] gi|297535184|gb|EFH74019.1| N utilization substance protein A [Vibrio cholerae RC385] gi|297540539|gb|EFH76597.1| transcription elongation factor NusA [Vibrio cholerae MAK 757] Length = 495 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 202/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|153001790|ref|YP_001367471.1| transcription elongation factor NusA [Shewanella baltica OS185] gi|160876524|ref|YP_001555840.1| transcription elongation factor NusA [Shewanella baltica OS195] gi|217972314|ref|YP_002357065.1| transcription elongation factor NusA [Shewanella baltica OS223] gi|304410266|ref|ZP_07391885.1| transcription termination factor NusA [Shewanella baltica OS183] gi|307302023|ref|ZP_07581781.1| transcription termination factor NusA [Shewanella baltica BA175] gi|151366408|gb|ABS09408.1| NusA antitermination factor [Shewanella baltica OS185] gi|160862046|gb|ABX50580.1| NusA antitermination factor [Shewanella baltica OS195] gi|217497449|gb|ACK45642.1| NusA antitermination factor [Shewanella baltica OS223] gi|304351675|gb|EFM16074.1| transcription termination factor NusA [Shewanella baltica OS183] gi|306914061|gb|EFN44482.1| transcription termination factor NusA [Shewanella baltica BA175] gi|315268718|gb|ADT95571.1| NusA antitermination factor [Shewanella baltica OS678] Length = 499 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFVNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G+D + GI T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGVEPSEELLALEGVDRHLAYVFASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|153826517|ref|ZP_01979184.1| N utilization substance protein A [Vibrio cholerae MZO-2] gi|149739697|gb|EDM53904.1| N utilization substance protein A [Vibrio cholerae MZO-2] Length = 495 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 203/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|120556256|ref|YP_960607.1| transcription elongation factor NusA [Marinobacter aquaeolei VT8] gi|120326105|gb|ABM20420.1| NusA antitermination factor [Marinobacter aquaeolei VT8] Length = 497 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 201/512 (39%), Positives = 324/512 (63%), Gaps = 23/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ Y +DIRV I+ TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRYEDEEADIRVAIDRRTGEYETFRRW 63 Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ +++L+ A + D ++ G + + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTLQEAEEIDTNLKPGDMYEEKVESVAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + ++D++GE++SGTVK+V NVIVDLG + + ++ R+ I RE R GDRV+ Sbjct: 124 AERMKIVDSYRDRIGELVSGTVKKVTRDNVIVDLGGNAEALLPREHLIPRETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + ++R + RGPQ++LSRT Q +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 ALLLEIRTDHRGPQLILSRTDSQMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV++ + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLYDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLA++LTGWT++++TEEE +++++N + F Sbjct: 304 DRHTMDVAVAEDNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEYNRLLEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VDE A +L+ EGF +EE+A V + E+ +IEGFDEET E++ RA++ L + Sbjct: 364 AHLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + ++L ++ G+D + L G++TMEDLA S+D+LL Sbjct: 424 SEEALEGAEPEDDLLNMDGMDRALAFKLAGMGVRTMEDLAEQSIDELLEIE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 --------GMDEERAGQLIMTARAP--WFEDQ 496 >gi|187478885|ref|YP_786909.1| transcription elongation factor NusA [Bordetella avium 197N] gi|115423471|emb|CAJ50005.1| transcription elongation protein (N utilization substance protein) [Bordetella avium 197N] Length = 492 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 310/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P +++G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSDAHEISPDLEVGDFIEEPLEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISGT+KR++ G+ IV+ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDYIVETGKIEARLPRTEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQENERVSLRATFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGLEEIAYVPMQELLEIEAFDEDTINELRVRARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ + L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGVTPDLAAKLAERNVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GMSEQEASDLIMRARAH--WFDEE 492 >gi|121587876|ref|ZP_01677633.1| N utilization substance protein A [Vibrio cholerae 2740-80] gi|153215844|ref|ZP_01950176.1| N utilization substance protein A [Vibrio cholerae 1587] gi|229512904|ref|ZP_04402371.1| transcription termination protein NusA [Vibrio cholerae TMA 21] gi|229520933|ref|ZP_04410355.1| transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229530447|ref|ZP_04419835.1| transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|121547912|gb|EAX57996.1| N utilization substance protein A [Vibrio cholerae 2740-80] gi|124114561|gb|EAY33381.1| N utilization substance protein A [Vibrio cholerae 1587] gi|229332220|gb|EEN97708.1| transcription termination protein NusA [Vibrio cholerae 12129(1)] gi|229342166|gb|EEO07162.1| transcription termination protein NusA [Vibrio cholerae TM 11079-80] gi|229350153|gb|EEO15106.1| transcription termination protein NusA [Vibrio cholerae TMA 21] gi|327483444|gb|AEA77851.1| Transcription termination protein NusA [Vibrio cholerae LMA3894-4] Length = 495 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 202/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|114562167|ref|YP_749680.1| transcription elongation factor NusA [Shewanella frigidimarina NCIMB 400] gi|114333460|gb|ABI70842.1| NusA antitermination factor [Shewanella frigidimarina NCIMB 400] Length = 499 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 194/515 (37%), Positives = 318/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGLPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+ + AR +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDQGEALENPYSEITFEAARYEEPEIQVGEFIEDQIDSVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F ++ GEI++G VK+ +V+VDLGN+ DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVEQFIEREGEIVTGVVKKSTRESVVVDLGNNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+R+ + +++LF +EVPEIY+ +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRSKAEMLIELFRVEVPEIYDELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVID 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++VD+ A +L EGF +EE+A V SE+ ++EGFDE ++ RA+ + Sbjct: 362 LFVAYLDVDKDFAAVLADEGFTSLEEIAYVPESELLAVEGFDEGIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + S++L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGAEPSDDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIDIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 477 ------------LTEEKAGELIMAAR-NICWFGEE 498 >gi|74316716|ref|YP_314456.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259] gi|74056211|gb|AAZ96651.1| NusA antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 492 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 211/509 (41%), Positives = 327/509 (64%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADA+A EK++D++VV + ++ A + + SD+RV I+ ETGD FR Sbjct: 4 EMLMLADALAREKNVDKEVVFEALEQALASATKKRFKEESDVRVAIDRETGDYESFRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+E+ QI L A+D+ P I+IG + +PL ++FGR+ Q+AKQVI+QK+R+A Sbjct: 64 VVTEAELESEGYQILLVDAQDKIPDIEIGDYIEEPLENVEFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G VKR++ GN I++ G +G + RD+ I RENLR GDRV++Y Sbjct: 124 EREQIISDFLARKEHLVNGVVKRIDRGNAIIESGRVEGFLHRDQMIPRENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQV+LSRT P+F++KLF +EVPEI G++++KA +RDPG RAK+AV S D Sbjct: 184 LLRIDRGNRGPQVVLSRTAPEFIMKLFELEVPEIEEGLLEIKAAARDPGLRAKIAVVSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G C+G+RGSRV +V EL E++DI+ WS D A +VINAL PA V+ +V+DED Sbjct: 244 PRIDPIGTCIGLRGSRVTSVTNELAGERVDIIHWSADPAQYVINALAPAEVSSIVVDEDT 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL++AIGR GQNVRLAS+LTGW ++I++ E + + + Q F++ Sbjct: 304 HSMDVVVDEEQLAMAIGRGGQNVRLASELTGWELNIMSREAAEEKQSSESQKTLQLFIEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE E++ RAR L I + Sbjct: 364 LDVDEEVAQILVDEGFSTLEEVAYVPLNEMLEIEAFDEALVNELRNRARNALLTAAIVGE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ + +L S+ G+D++ L G+ T EDLA +VD+L + Sbjct: 424 EQVEAS--AGDLLSLDGMDAETARLLASKGVHTTEDLAELAVDELTEMA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 ++ + +I+ AR W + Sbjct: 471 ------AMDAERAKQLIMAARAP--WFAQ 491 >gi|94497164|ref|ZP_01303736.1| NusA antitermination factor [Sphingomonas sp. SKA58] gi|94423269|gb|EAT08298.1| NusA antitermination factor [Sphingomonas sp. SKA58] Length = 522 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 277/519 (53%), Positives = 380/519 (73%), Gaps = 7/519 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN+ EL+ IA++VA EK ID+ +V+ M D+IQ+AAR+ YG +DIR +++P++GD+ Sbjct: 5 ISANKAELIAIANSVASEKMIDKAIVIEAMEDAIQRAARARYGAENDIRAKLDPDSGDLR 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L+R++EVVE VE+Y Q+ LK + IG + DPLP +D GR+ QSAKQVI QK Sbjct: 65 LWRVVEVVETVEDYFKQVDLKQGQKLKKDAVIGDFIVDPLPAIDLGRIDAQSAKQVIFQK 124 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VR+AER+RQY E+KD+VGEII+G VK VE+G+V+V+LG ++GVIRRD+ I RE +R GDR Sbjct: 125 VRDAERERQYEEYKDRVGEIITGVVKSVEFGHVVVNLGRAEGVIRRDQQIPREVVRVGDR 184 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++S + +VRRE RGPQ+ LSR HP+FM KLF EVPEIY+G++ + A +RDPGSRAK+ V Sbjct: 185 IRSVVLNVRRENRGPQIFLSRAHPEFMKKLFAQEVPEIYDGVITIMAAARDPGSRAKIGV 244 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S DSSIDPVGACVGM+GSRVQAVV E++ EKIDI+ WS D+ATFV+NAL+PA V +VV+ Sbjct: 245 ISRDSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPAQVARVVI 304 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ RIEV+VP +QLSLAIGRRGQNVRLASQLTG IDI+TE + S RQK+F R++ Sbjct: 305 DEEEERIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTEADASEKRQKEFVARSEM 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE ++ LLVAEGF ++EE+A V + E+A IEGFDE+ A E+Q RA+E L+ + Sbjct: 365 FQNELDVDETLSQLLVAEGFGELEEVAYVTVEELAGIEGFDEDLAAELQSRAQEALDRRE 424 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL-----GWSEN 476 +++ + LGV + L +P + + V LG+ GIKT++DLA + D+L+ Sbjct: 425 AAAREERQALGVDDALADMPHLTEAMLVTLGKAGIKTLDDLADLATDELIAKKRVDQRRR 484 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 K E G LS+ G ++Q +I+ AR W E+E Sbjct: 485 KSETTEDKGGILSAYGLNEEQGNEIIMAARAH--WFEEE 521 >gi|91792366|ref|YP_562017.1| transcription elongation factor NusA [Shewanella denitrificans OS217] gi|91714368|gb|ABE54294.1| NusA antitermination factor [Shewanella denitrificans OS217] Length = 499 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 197/515 (38%), Positives = 319/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I+ G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDQGEALENPYSEITLEAARYEEPGIEPGQYIEDQIDSVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F +K GEI++G VK+ NV+VDLGN+ DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFIEKEGEIVTGIVKKSSRENVVVDLGNNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+R+ P+ +++LF +EVPEIY+ ++++ +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRSKPEMLIELFRVEVPEIYDEMIEIMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDENPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVID 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A+ VD A +L EGF +EE+A V +E+ +I+GFD + ++ RA+ + Sbjct: 362 LFVSALEVDTDFATVLAEEGFTSLEEIAYVPEAELLAIDGFDSDIVETLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + L G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIEIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W +E Sbjct: 477 ------------LTEAKAGELIMAAR-NICWFGEE 498 >gi|226940848|ref|YP_002795922.1| transcription elongation factor NusA [Laribacter hongkongensis HLHK9] gi|226715775|gb|ACO74913.1| NusA [Laribacter hongkongensis HLHK9] Length = 497 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 208/514 (40%), Positives = 322/514 (62%), Gaps = 28/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-----MSDIRVEINPETGDISL 62 E+L + DA+A EK++ +D+V + ++ A + D+RV I+ TG Sbjct: 4 EILLLVDALAREKNVSKDIVFGALELALASATKKKISQDTNQDEIDVRVSIDRHTGAYET 63 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VVE+ E + QI++ A + + +G + +P+ ++FGR+ Q+AKQVI+Q Sbjct: 64 FRRWTVVEDNDHEFPSRQIAMSDAAEHEVEAVVGTIKEEPVEAIEFGRIGAQTAKQVILQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+R+AER++ +F D+ +++SGT+KR+E GNVI+DLG + ++ R++ I +ENLR GD Sbjct: 124 KIRDAEREQVLNDFLDRNEKLVSGTIKRIERGNVIIDLGKLEALLPREQQIPKENLRVGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ V R RGPQ++LSR PQF+ +LF EVPEI +G++++K +RD GSRAK+A Sbjct: 184 RVKAYLLRVDRMGRGPQIILSRIAPQFITELFRQEVPEIDDGMLEIKGCARDAGSRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D +DP G C+GMRGSRVQAV EL E++DIV+W+ D +VINAL PA V +++ Sbjct: 244 VKANDPRLDPQGTCIGMRGSRVQAVTNELGGERVDIVLWAGDIVQYVINALSPAEVQRIL 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++V+V ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + + Q Sbjct: 304 IDEDKHAMDVVVDEDQLALAIGRGGQNVRLASELTGWVLNIMTVAEAEEKHEAEDAAMKQ 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM A++VD+ +A +L +EGF +EE+A V + E+ I FD ET E++ RARE L Sbjct: 364 LFMDALDVDQDVADVLASEGFTTLEEIAYVPLEEMLQISYFDAETVNELRSRAREALLTQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 I ++K+ V + L +PG+ + V L ENG+ T +DLA +VD+L + Sbjct: 424 AIASEEKMN--SVEDALRELPGMTQDVLVKLAENGVTTRDDLADLAVDELADMT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +D+ ++I+ AR W E+ Sbjct: 476 -----------NITEDEARALIMKAREH--WFEQ 496 >gi|119470821|ref|ZP_01613432.1| transcription elongation factor NusA [Alteromonadales bacterium TW-7] gi|119446048|gb|EAW27327.1| transcription elongation factor NusA [Alteromonadales bacterium TW-7] Length = 499 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 191/514 (37%), Positives = 320/514 (62%), Gaps = 24/514 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR + Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVSIDRKTGDYDTFRRWQ 63 Query: 68 VVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + E +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAEVLEDGSLENPYSEITLEAAQVEEPDLQLGDFVEEQIDSIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER +KD+VGE+++G VK+ ++++DLGN+ + VI RD+ + REN RPGDR Sbjct: 124 REAERALVVDAYKDQVGELVTGVVKKATRDSIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +VL Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMSPAEVASIVL 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRTKNEAESDKLLNL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLDIDDEFATLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W E Sbjct: 478 -----------LSSEQAGELIMAAR-NICWFADE 499 >gi|157962879|ref|YP_001502913.1| transcription elongation factor NusA [Shewanella pealeana ATCC 700345] gi|157847879|gb|ABV88378.1| NusA antitermination factor [Shewanella pealeana ATCC 700345] Length = 499 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 200/515 (38%), Positives = 316/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A+ DP I++GG + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDAGVPLENPFREITLEAAKYDDPEIELGGYIEDEIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGTNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVADMKAKHQAESAKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+QA++VDE A LL EGF +EE+A V SE+ I+GFDE+ ++ RA+ + Sbjct: 362 LFIQALDVDEEFAQLLSDEGFTSLEEIAYVPASELLEIDGFDEDIVESLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|113969369|ref|YP_733162.1| transcription elongation factor NusA [Shewanella sp. MR-4] gi|114046596|ref|YP_737146.1| transcription elongation factor NusA [Shewanella sp. MR-7] gi|113884053|gb|ABI38105.1| NusA antitermination factor [Shewanella sp. MR-4] gi|113888038|gb|ABI42089.1| NusA antitermination factor [Shewanella sp. MR-7] Length = 499 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 205/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDNGVALENPYREITLEAARFENPEIQPGDFIEDEIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498 >gi|261253851|ref|ZP_05946424.1| transcription termination protein NusA [Vibrio orientalis CIP 102891] gi|260937242|gb|EEX93231.1| transcription termination protein NusA [Vibrio orientalis CIP 102891] Length = 495 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 321/509 (63%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR E Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEMEIDVRVEIDRKTGEFETFRRWE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +ISL+ A+ DP +++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEVVESPTKEISLEAAQYEDPELNVGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ ++ + FM+ + Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDLHKKHAEESQAAIESFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +E+L + G++ ++ L G+ T+EDLA +DD+ G Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494 >gi|312885214|ref|ZP_07744893.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC BAA-2122] gi|309367154|gb|EFP94727.1| transcription elongation factor NusA [Vibrio caribbenthicus ATCC BAA-2122] Length = 495 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 198/510 (38%), Positives = 318/510 (62%), Gaps = 19/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVEN T +ISL+ A+ D I +G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVEEVENPTKEISLEAAQYEDAEIQLGDFVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTIVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPDMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDTN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T ++ ++ + FM+ + Sbjct: 304 TMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDDLHKKHAEESQAAIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DEE E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEELVEELRNRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +++L + G++ ++ L G+ T+EDLA +DD+ Sbjct: 424 SFEGVEPADDLLGLEGLEREMAFKLAARGVATLEDLAEQGIDDIESIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR + W +++ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEDE 495 >gi|117919478|ref|YP_868670.1| transcription elongation factor NusA [Shewanella sp. ANA-3] gi|117611810|gb|ABK47264.1| NusA antitermination factor [Shewanella sp. ANA-3] Length = 499 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 205/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFINALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGALIMAAR-NICWFGEE 498 >gi|119477402|ref|ZP_01617593.1| N utilization substance protein A [marine gamma proteobacterium HTCC2143] gi|119449328|gb|EAW30567.1| N utilization substance protein A [marine gamma proteobacterium HTCC2143] Length = 502 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 216/519 (41%), Positives = 329/519 (63%), Gaps = 22/519 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + RD++ + ++ A + Y +DI V I+ E+G FR Sbjct: 2 NKEILLVAEAVSNEKGVPRDIIFEAIEQALATATKKRYDEDADIHVIIDRESGGYETFRR 61 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + E Q + + A ++D S+ IG V + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WEVVSDDEMALLGTQFTTEEAAEKDTSLQIGDVYEEKIENVGFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + E++ +VGE+ISGTVK+V N+IVDLGN+ +G + R+E + RE R GDRV Sbjct: 122 EAERAQVVEEYEGRVGELISGTVKKVTRDNIIVDLGNNAEGSLPREELVGREVFRMGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+ LSR + +++LF +EVPEI ++ ++A +RDPGSRAK+AV Sbjct: 182 RAILQDVRPEARGPQLFLSRACSEMLIELFKVEVPEISEEVIDIRAAARDPGSRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDP+GACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+D Sbjct: 242 TNDGRIDPIGACVGMRGSRVQAVSGELGNERVDIILWDDNPAQLVINAMAPAEVESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED ++V V + L+ AIGR GQNVRLAS LTGWTI++++ E+ S +K+ F Sbjct: 302 EDSRSMDVAVAADNLAQAIGRSGQNVRLASDLTGWTINVMSLEDASEKHEKESGAVIAEF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M++++VDE IA +LV EGF +EE+A V + E+A IEGFDE+ A E++ RA++ L I Sbjct: 362 MESLDVDEDIAEVLVDEGFTSLEEVAYVPLEELAGIEGFDEDIAEELRARAKDALLTQAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ ++ +E+L ++ G++ + L GI TMEDLA +V+DL+ Sbjct: 422 ASEEQLGDVEPAEDLLTMDGMERHLAFVLASKGIITMEDLAEQAVEDLMDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 G + Q +I+ AR W + + + + Sbjct: 474 ---------GLEEKQAGELIMTARAP--WFAEAEETENQ 501 >gi|323495468|ref|ZP_08100543.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326] gi|323319465|gb|EGA72401.1| transcription elongation factor NusA [Vibrio sinaloensis DSM 21326] Length = 495 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 196/509 (38%), Positives = 318/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RVEI+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVEIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+VEN T +ISL+ A+ + +++G V D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 IVEDVENPTKEISLEAAKFENEELELGDYVEDDIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V V++DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDTVVLDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI I+++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEEIIELKGAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + ++ + FM+ + Sbjct: 304 AMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHAEESQAAIEGFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++E A LLV EGF+ +EE+A V ++E+ ++G DE+ E++ RA+ L + + ++ Sbjct: 364 DIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEDLVEELRSRAKNALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +E+L + G++ ++ L G+ T+EDLA +DD+ Sbjct: 424 SFEGVEPAEDLLGLEGLEREMAFKLAAKGVATLEDLADQGIDDIEDIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W +E Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGEE 494 >gi|261212247|ref|ZP_05926533.1| transcription termination protein NusA [Vibrio sp. RC341] gi|260838855|gb|EEX65506.1| transcription termination protein NusA [Vibrio sp. RC341] Length = 495 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 202/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAANFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLTELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|149189795|ref|ZP_01868076.1| transcription elongation factor NusA [Vibrio shilonii AK1] gi|148836444|gb|EDL53400.1| transcription elongation factor NusA [Vibrio shilonii AK1] Length = 495 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 196/510 (38%), Positives = 319/510 (62%), Gaps = 19/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + D+RV I+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALEIALATSTKKKHEIEIDVRVAIDRKTGEFETFRRWM 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VEEVE T +IS++ A+ D SI +G V + + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 AVEEVEFPTKEISIEAAQFDDESIQVGDFVEEEIDSVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D G++++G VK+V +I+DLGN+ + VI RD+ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGDLVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIAEELIELKGAARDPGSRAKIAVKTNDR 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLQKKHQEEAIASIENFMKHL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A +LV EGF+ +EE+A V ++E+ I+G +EE E++ RA++ L + + ++ Sbjct: 364 DIEQDFAEMLVEEGFSTLEEVAYVPVNELLEIDGLNEELVEELRSRAKDALTTLALAQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 424 SFEGVEPAEDLLALEGLEREMAFKLAAKGVATLEDLADQGVDELEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR + W E+ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGDEE 495 >gi|89072574|ref|ZP_01159146.1| transcription elongation factor NusA [Photobacterium sp. SKA34] gi|89051678|gb|EAR57131.1| transcription elongation factor NusA [Photobacterium sp. SKA34] Length = 495 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 314/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + ++RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIEVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VEEV T +I+L+ A+ DP+I G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVEEVTQPTLEITLEAAQFEDPTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+I+G VK+V VI+DLG N++ VI+RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGSNAEAVIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLCELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +SE+ ++G DEET +++ RA+ L + + Sbjct: 362 HLDIDEDFATVLVEEGFTTLEEIAYVPLSELMDVDGLDEETIDQLRSRAKAALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ GI T+EDLA DDL Sbjct: 422 EETLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR + W E Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494 >gi|258624683|ref|ZP_05719617.1| N utilization substance protein A [Vibrio mimicus VM603] gi|258582970|gb|EEW07785.1| N utilization substance protein A [Vibrio mimicus VM603] Length = 495 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 203/509 (39%), Positives = 319/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLVELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|262163944|ref|ZP_06031683.1| transcription termination protein NusA [Vibrio mimicus VM223] gi|262027472|gb|EEY46138.1| transcription termination protein NusA [Vibrio mimicus VM223] Length = 495 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 201/509 (39%), Positives = 317/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEPDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|126175440|ref|YP_001051589.1| transcription elongation factor NusA [Shewanella baltica OS155] gi|125998645|gb|ABN62720.1| NusA antitermination factor [Shewanella baltica OS155] Length = 499 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIDVRVAIDRKTGGYDTFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVDDHGEALENPYREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDQEGELITGIVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + ++++ +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEIMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWVLNVMTVEDMNKKHQAESAKVVE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFVNSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G+D + GI+T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGVEPSEELLALEGVDRHLAYVFASKGIETLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|237808991|ref|YP_002893431.1| transcription elongation factor NusA [Tolumonas auensis DSM 9187] gi|237501252|gb|ACQ93845.1| NusA antitermination factor [Tolumonas auensis DSM 9187] Length = 499 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 318/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILLVVDAVSNEKAVPREKIFQALETALATATKKKYEGDIEVRVTIDRKTGDFDTFRR 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VVE ++N +ISL A+ DPSI +G V + + + F R+ Q+AKQVI+QKV Sbjct: 62 WQVVEGDGIMQNPYREISLDAAQYDDPSIQLGDYVEEQVESITFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +F+D+ G I++G VK+V ++I+DLG N++GV+ R++ + RE+ R GDR Sbjct: 122 REAERAQIVEQFRDQEGTIVTGVVKKVNRDSIIMDLGSNAEGVLYREDMLPRESFRNGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK + V+ E RG Q+ +SRTHP F+ +LF +EVPEI I+++K +RDPGSRAK+AV Sbjct: 182 VKGLLAAVKPEARGSQLFISRTHPDFLKELFRIEVPEIGEEIIEIKGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++ Sbjct: 242 KTNDRRIDPVGACVGMRGARVQAVSGELAGERIDIVLWDDNPAQFVINAMAPADVASLIV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V L+ AIGR GQNVRLASQL+GW ++++T E+ Q + + Sbjct: 302 DEDNHTMDIAVISSNLAQAIGRNGQNVRLASQLSGWELNVMTVEDMQTKHQAEKDRILTL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F QA+++D+ A LLV EGF+ VEE+A V +SE+ I+G D E E++ RA++ L Sbjct: 362 FTQALDIDDDFAELLVEEGFSTVEEIAYVPLSELQRIDGLDNEQIEELRERAKQALSTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +++L ++ G+ + L GI T+EDLA +DDL G Sbjct: 422 LAKEETLAGAKPADDLLALQGMTLDLAYELAARGIPTLEDLAEQGIDDLSGIP------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 475 ----------GMTEEKAGELIMAAR-NICWFGEQ 497 >gi|319427306|gb|ADV55380.1| NusA antitermination factor [Shewanella putrefaciens 200] Length = 499 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 322/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYDGDIDVRVAIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDHGEALENPFREITLEAARYENPDIQPGEFIEDDIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFRDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ LSRT P+ +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLSRTKPEMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVVS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ +++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFINSLDVDEDFAQVLANEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + S+EL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSDELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++I+ AR + W +E Sbjct: 482 -----------------AGTLIMAAR-NICWFGEE 498 >gi|90581550|ref|ZP_01237343.1| transcription elongation factor NusA [Vibrio angustum S14] gi|90437312|gb|EAS62510.1| transcription elongation factor NusA [Vibrio angustum S14] Length = 495 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 199/511 (38%), Positives = 311/511 (60%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGEFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VEEV T +I+L+ A+ D +I G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WKAVEEVTQPTLEITLEAAQFEDSTIVAGDYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+I+G VK+V VI+DLGN+ + VI+RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ ++R+ P+ + +LF +EVPE+ ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYKVAPEARGFQLFMTRSKPEMLSELFRIEVPEMGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDENPAQYVINAMAPAEVDSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ E + F + Sbjct: 302 NHTMDIAVQKDNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAKESIEVFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF +EE+A V +SE+ ++G DEE +++ RA+ L + + Sbjct: 362 HLDIDEEFATVLVEEGFTTLEEIAYVPVSELMDVDGLDEEIIDQLRSRAKAALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L + G++ ++ GI T+EDLA DDL Sbjct: 422 EETLDGAEPAEDLLGLEGLERELAFKFAAKGICTLEDLADQGTDDLTDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR + W E Sbjct: 472 -------GVDDAKAGELIMAAR-NICWFSDE 494 >gi|258620312|ref|ZP_05715350.1| N utilization substance protein A [Vibrio mimicus VM573] gi|262172282|ref|ZP_06039960.1| transcription termination protein NusA [Vibrio mimicus MB-451] gi|262401660|ref|ZP_06078226.1| transcription termination protein NusA [Vibrio sp. RC586] gi|258587191|gb|EEW11902.1| N utilization substance protein A [Vibrio mimicus VM573] gi|261893358|gb|EEY39344.1| transcription termination protein NusA [Vibrio mimicus MB-451] gi|262352077|gb|EEZ01207.1| transcription termination protein NusA [Vibrio sp. RC586] Length = 495 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 201/509 (39%), Positives = 318/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDESVQMGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDTH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLAEELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ ++ L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLEREMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR + W ++ Sbjct: 472 -----GLTEQRAGELIMAAR-NICWFGED 494 >gi|300704337|ref|YP_003745940.1| transcription termination/antitermination l factor [Ralstonia solanacearum CFBP2957] gi|299072001|emb|CBJ43331.1| transcription termination/antitermination L factor [Ralstonia solanacearum CFBP2957] Length = 491 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKEILLFEAREQNPDVSIDDFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|241662813|ref|YP_002981173.1| transcription elongation factor NusA [Ralstonia pickettii 12D] gi|309782264|ref|ZP_07676992.1| transcription termination/antitermination protein NusA [Ralstonia sp. 5_7_47FAA] gi|240864840|gb|ACS62501.1| NusA antitermination factor [Ralstonia pickettii 12D] gi|308918957|gb|EFP64626.1| transcription termination/antitermination protein NusA [Ralstonia sp. 5_7_47FAA] Length = 491 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L A++++P +D+ V + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQNPDLDVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EERVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|253991503|ref|YP_003042859.1| transcription elongation factor NusA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638381|emb|CAR67003.1| n utilization substance protein a (nusa protein) (l factor) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782953|emb|CAQ86118.1| n utilization substance protein a (nusa protein) (l factor) [Photorhabdus asymbiotica] Length = 502 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 316/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR +P I +G D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARFEEPEITLGSYTEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E Q + + Sbjct: 302 KCTMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I+E+ IEG DEET ++ RA+ L Sbjct: 362 SIDIFTKHLDIDEEFATVLVEEGFSTLEELAYVPINELLEIEGLDEETIEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLSDKQPTEELLNLTGMNRTLAFDLAACGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNDEKAGELIMAAR-NICWFGDD 501 >gi|270158099|ref|ZP_06186756.1| transcription elongation protein NusA [Legionella longbeachae D-4968] gi|289163636|ref|YP_003453774.1| Transcription elongation protein nusA [Legionella longbeachae NSW150] gi|269990124|gb|EEZ96378.1| transcription elongation protein NusA [Legionella longbeachae D-4968] gi|288856809|emb|CBJ10620.1| Transcription elongation protein nusA [Legionella longbeachae NSW150] Length = 492 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 203/508 (39%), Positives = 332/508 (65%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R ++G +R++++P TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKIFGLDIGVRIKLDPRTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +++E+ Q++L+ A+ R+PS+++G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVTDDDLEDPDRQLTLEQAKTRNPSVNVGDRIEESIPSIEFGRIEAQAARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELVIDQFRGKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRTEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI +++VKA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIEVKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA ++ +V+DED Sbjct: 244 DGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADISSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E ++ ++ + F Sbjct: 304 THTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNLEESSKIIKLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEIAYVPKEELLAIEEFDDEIVEELRNRANDNLLTMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K + + L ++ G+ + L GI +MEDLA SVD+LL Sbjct: 424 NKDLSG-QPDDSLLTMEGMTQDLANQLATRGITSMEDLAEQSVDELLELD---------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D+ ++I+ AR W Sbjct: 473 -------GMTEDKAAALIMKAREP--WF 491 >gi|117927003|ref|YP_867620.1| NusA antitermination factor [Magnetococcus sp. MC-1] gi|117610759|gb|ABK46214.1| NusA antitermination factor [Magnetococcus sp. MC-1] Length = 506 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 245/519 (47%), Positives = 351/519 (67%), Gaps = 21/519 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E+LQ+AD VA EK IDR VV+ M +IQ A+R YG +I+ +P++G+ L +L Sbjct: 3 VEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQLR 62 Query: 67 EVV-----EEVE-NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 EVV E+++ + ISL+ A +P G +++ LPPM+FGR+A Q+AKQVI+Q Sbjct: 63 EVVDLDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQVIVQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVR+AER+R + E+ D+ GE+++G VKRVE N+ VDLG + G + +E + RE+ RPGD Sbjct: 123 KVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGRTSGFLPHEEQLPREHYRPGD 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++++I +VR RGPQ++LSRTHPQ +V+LF MEVPEIY+GIV++KAV+RDPG R+K+A Sbjct: 183 RIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHRSKIA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D+ +DPVGACVGMRGSRVQ+VVTEL+ E+IDI+ WS D A FV NAL PA V KVV Sbjct: 243 VRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEVVKVV 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ I+V+V + LSLAIGRRGQNVRLAS+LTGW IDIITE+E+ R++ F E Q Sbjct: 303 VDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFGELQQ 362 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+ +++ E +A +LV EGF EE+A V ++E+ SIEGFDEE A E++ RAR+ L Sbjct: 363 TFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDTLLQQ 422 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +++ EL + E L + + +AL E + T++DLA + D+L+ + Sbjct: 423 ALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFDG---- 478 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 + E++I+ AR GW + E+ Sbjct: 479 -----------ELTTEDAETLILGARRAAGWFDDEEETA 506 >gi|253686985|ref|YP_003016175.1| NusA antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753563|gb|ACT11639.1| NusA antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 509 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 205/526 (38%), Positives = 317/526 (60%), Gaps = 32/526 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ D S+D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDSSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +Q +I+ AR + W + Sbjct: 482 DIE-----------------GLNDEQAGELIMAAR-NICWFGDDNE 509 >gi|255019834|ref|ZP_05291910.1| Transcription termination protein NusA [Acidithiobacillus caldus ATCC 51756] gi|254970763|gb|EET28249.1| Transcription termination protein NusA [Acidithiobacillus caldus ATCC 51756] Length = 493 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 230/508 (45%), Positives = 337/508 (66%), Gaps = 22/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +ADAVA+EK +DR+V+ + S+ A++ YG DI V ++ +TGD + R Sbjct: 4 ELLYLADAVAHEKEVDREVIFQALEASLVSASKKKYGPNWDIVVTVDRKTGDYTTRRRWT 63 Query: 68 VV-EEVENYTCQ--ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV ++ E++ + I L AR RD I +G V+ + LP ++FGR+A Q+AKQVI+Q+VR+ Sbjct: 64 VVADDAEDFEAEAQIRLSDARARDQGIAVGDVIEEELPDVEFGRIAAQTAKQVIVQRVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDR +F + GEIISG VKR+E GN I+D+G ++ ++ ++E I RE +RPGDR+K Sbjct: 124 AERDRIVADFAMRQGEIISGVVKRMEKGNAIIDMGRAEAILPKEEMIPREAIRPGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ +VRR RGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+ Sbjct: 184 HLKEVRRVPRGPQLFLSRTSPELLMKLFAQEVPEIANGMIEIMGAARDPGLRAKLAVRSN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVGMRG+RVQ V+ EL+ E++DIVVWSP+ A+FVINAL PA V+ +++DE+ Sbjct: 244 EPRVDPVGACVGMRGNRVQTVINELKGERVDIVVWSPEPASFVINALSPAEVSSIIVDEN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V EQLSLAIGR GQNVRLASQLTGWTI+I+TE+E R+++ Q FM Sbjct: 304 THSMDVVVDPEQLSLAIGRGGQNVRLASQLTGWTINILTEDEARAKREEEDARFRQQFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +DE +A LLV EGF +EE+A V ++E+ IEG DEE E++ RAR+ L I Sbjct: 364 DLGIDEDLATLLVNEGFTSIEEVAYVPVAEMLEIEGLDEELVTELRRRARDVLLNKAIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L ++ G+D + L GI T E LA +VD+L Sbjct: 424 EEQVVLSEPAEDLLALEGMDKGLAHLLASKGITTAESLAELAVDELCEL----------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 + ++ +++I+ AR W Sbjct: 473 ------VDIEPERAKALILKARAP--WF 492 >gi|227327826|ref|ZP_03831850.1| transcription elongation factor NusA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 509 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 205/526 (38%), Positives = 317/526 (60%), Gaps = 32/526 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L +PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509 >gi|260771815|ref|ZP_05880733.1| transcription termination protein NusA [Vibrio metschnikovii CIP 69.14] gi|260613107|gb|EEX38308.1| transcription termination protein NusA [Vibrio metschnikovii CIP 69.14] Length = 495 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 317/509 (62%), Gaps = 19/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + + ++RV I+ +TG+ FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKHEMEIEVRVAIDRKTGEFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS A D ++ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFDAANYDDETVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V +VIVDLGN+ + VI R++ + REN R GDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRDSVIVDLGNNAEAVILREDQLPRENFRSGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 + V E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RDPGSRAK+AV S+D Sbjct: 184 FKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEEMIELKGAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESTASIEKFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A +LV EGF+ +EE+A V +SE+ I+G +EE EI+ RA+E L I +T ++ Sbjct: 364 DIEQDFAEMLVEEGFSTLEEIAYVPVSELLEIDGLNEEIIEEIRARAKEALTTIALTQEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +++L + G++ + L G+ T+EDLA +DDL G Sbjct: 424 SFEGLEPADDLLGLAGLERDMAFKLAAKGVATLEDLADQGIDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR + W ++ Sbjct: 472 -----GLTEERAGELIMAAR-NICWFGED 494 >gi|77359942|ref|YP_339517.1| transcription elongation factor NusA [Pseudoalteromonas haloplanktis TAC125] gi|76874853|emb|CAI86074.1| transcription elongation protein (N utilization substance protein A) (L factor) [Pseudoalteromonas haloplanktis TAC125] Length = 499 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 191/514 (37%), Positives = 320/514 (62%), Gaps = 24/514 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ ++ + + ++ A + +G D+RV I+ +TGD +R + Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHGGDIDVRVAIDRKTGDYDTYRRWQ 63 Query: 68 ---VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDFVEEQIDSIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER E+K K GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR Sbjct: 124 REAERALVVEEYKSKEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+ Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRSKNEAESDKLLNL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + + +D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLEIDDEFASLLINEGFSSLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVITLEDLAEQGIDELVDITE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 -----------LSPEKAGELIMAAR-NICWFADE 499 >gi|227112574|ref|ZP_03826230.1| transcription elongation factor NusA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 509 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 204/526 (38%), Positives = 316/526 (60%), Gaps = 32/526 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L+ A+ DP++D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTQPTREITLEAAQFEDPALDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEVIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++D+ A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDDEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + +E+L +PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESRGDGQPAEDLLGLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509 >gi|90022354|ref|YP_528181.1| transcription elongation factor NusA [Saccharophagus degradans 2-40] gi|89951954|gb|ABD81969.1| transcription termination factor NusA [Saccharophagus degradans 2-40] Length = 493 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 206/513 (40%), Positives = 324/513 (63%), Gaps = 25/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L +ADAV+ EK +D+ ++ + ++ A + Y +DI+V I+ + GD R Sbjct: 2 KKEILLVADAVSNEKGVDKGIIFEAIELALASATKKRYDEDADIKVTIDRKDGDYVTVRR 61 Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV++ Q + + A ++DPS+ G V + + +DFGR+A Q+AKQVI+QKVR Sbjct: 62 WLVVDDDTLAELGTQFTTEEAIEKDPSLKPGDVYEEVIENVDFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + E++ +VGE+I+GTVK+V N+IVDLG + +G++ R+E + RE R DRV Sbjct: 122 EAERAQIVDEYRGRVGELIAGTVKKVTRDNIIVDLGGNAEGLLPREELVGREVFRMNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+ LSR P+ +++LF +EVPEI ++ + A +RDPGSRAK+AV Sbjct: 182 RAVLADVRPEARGPQLFLSRACPEMLIELFKIEVPEIAEEVISLNAAARDPGSRAKIAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL +E+IDI++W + A FVINA+ PA + +V+D Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIILWDDNPAQFVINAMAPAEIESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ G ++V V ++ L+ AIGR GQNVRLAS+LTGW I++++ ++ + + + F Sbjct: 302 EEAGSMDVAVAEDNLAQAIGRGGQNVRLASELTGWEINVMSVDQWNEKQAAEAGSARDVF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + A+++DE +A +LV EGF +EE+A V + E +IEGFDEE A E++ RA++ L + Sbjct: 362 INALDIDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEEIAEELRNRAKDALLTQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K +++L ++ G+D + L G+ MEDLA +VD+L+ Sbjct: 422 AGEEK---NQPADDLVNMEGMDDALAQTLAARGVICMEDLAEQAVDELMEID-------- 470 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ ++I+ AR W E Sbjct: 471 ---------GMDEERAAALIMKAREP--WFADE 492 >gi|194289950|ref|YP_002005857.1| transcription elongation factor nusa [Cupriavidus taiwanensis LMG 19424] gi|193223785|emb|CAQ69792.1| transcription termination/antitermination L factor [Cupriavidus taiwanensis LMG 19424] Length = 491 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 210/509 (41%), Positives = 333/509 (65%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+ +PSI++G + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDELGLQEPDKQILLFEAREENPSIELGDYIEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPDFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +S+I+ AR W Sbjct: 472 -------GVSEEEAKSLIMKAREH--WFN 491 >gi|89095215|ref|ZP_01168138.1| transcription elongation factor NusA [Oceanospirillum sp. MED92] gi|89080512|gb|EAR59761.1| transcription elongation factor NusA [Oceanospirillum sp. MED92] Length = 495 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 210/513 (40%), Positives = 329/513 (64%), Gaps = 22/513 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + ++V+ + ++ A + Y +DIRV I+ TGD FR Sbjct: 2 NKEILLVAEAVSNEKDVPKEVIFEAIEVALATATKKRYDEEADIRVVIDRATGDYETFRR 61 Query: 66 LEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV EEV +++++ A + D ++ G + + + + FGR+A Q+AKQVI+QKVR Sbjct: 62 WLVVSNEEVPALGTELTMEEAEEIDTALQPGDIHEEQVESVAFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +++D+ GE+ISG+VK+V N+IVDLGN+ + ++ RD+ I RE R GDRV Sbjct: 122 EAERAKVVEQYRDRQGELISGSVKKVTRDNIIVDLGNNAEALLPRDQLIQREAFRMGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + +VR E RGPQ+++SR+ + +++LF +EVPEI +++++A SRDPGSRAK+AV Sbjct: 182 RAVLKEVRSEGRGPQLIMSRSCNEMLIELFRIEVPEISEEVIEIRAASRDPGSRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +VLD Sbjct: 242 TNDGRIDPVGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIVLD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V V +E L++AIGR GQNVRLAS+LTGW ++++TEE+ Q + F Sbjct: 302 EETHSMDVAVAEENLAMAIGRSGQNVRLASELTGWELNVMTEEDAQAKHQSEVGSVIDNF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE +A +LV EGF +EE+A V + E+ I+GFDE+ E++ RA++ L + I Sbjct: 362 INHLDVDEDVAEVLVEEGFTTLEEVAYVPVDEMLEIDGFDEDIVEELRKRAKDALLNLAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ + +E+L ++ G+D + + GI TMEDLA S+DDLL Sbjct: 422 ASEEKLDKAEPAEDLLTMEGMDKHLAFLMAAQGIITMEDLAEQSIDDLLDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ ++I+ AR W +E Sbjct: 474 ---------GLDEEKAAALIMTARAP--WFAEE 495 >gi|515637|gb|AAA20049.1| transcription factor [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 500 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 316/516 (61%), Gaps = 24/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMR +RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRRARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +D L Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGVDRDMAFKLAARGVCTLEDLAQQGIDHLADIE----- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++II AR + W E Sbjct: 477 ------------GLTDEKAGALIIAAR-NICWFGDE 499 >gi|257094534|ref|YP_003168175.1| transcription elongation factor NusA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047058|gb|ACV36246.1| NusA antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 490 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 330/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + D +A EK++ +D+V + ++ A + +++RV ++ ETGD FR E Sbjct: 4 EILLLVDVLAREKNVTKDIVFGALEMALASATKKRVHDNANVRVVVDRETGDFETFRRWE 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + + QI L A+++DP ++IG + + L P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VVADGDFLDEEQQIPLSDAQEQDPEVEIGDFLEESLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++GT+KR+E GN I++ G + V+ RD+ I RENLR GDRVK+Y Sbjct: 124 EREQILNDFLARKEHLVTGTIKRMERGNAIIETGKIEAVLPRDQMIPRENLRIGDRVKAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F+++LF +EVPE+ +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRAARGPQLILSRTAPEFIIRLFALEVPEVDDGLLEIKAAARDPGMRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRG RV AV EL E++DIV+WS D A FVI AL PA V+ +++DE+ Sbjct: 244 QRIDPIGTCVGMRGMRVTAVTNELAGERVDIVLWSADPAQFVIGALAPAEVSSIIVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L++AIGR GQNVRLAS++TGWTI+++TEEE + + FM+ Sbjct: 304 HSMDVVVDEQNLAIAIGRGGQNVRLASEMTGWTINLMTEEESKTLVEAEAAAIRVLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A++L+ EGF+ +EE+A V + E+ IE FDE T E++ RAR L I + Sbjct: 364 LDVDEELANILIEEGFSTLEEVAYVPLHEMIEIESFDEATVQELRERARNVLLTDAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +KI E V+E++ ++ G+D + L +GIKT +DLA +VD+L + Sbjct: 424 EKIGE--VAEDMLNLEGMDKVLAGKLASSGIKTRDDLADLAVDELTEIT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + + +I AR W E Sbjct: 471 ------GIDTPRAKQLITTARAH--WFE 490 >gi|262189773|ref|ZP_06048124.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93] gi|262034350|gb|EEY52739.1| transcription termination protein NusA [Vibrio cholerae CT 5369-93] Length = 504 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 203/517 (39%), Positives = 318/517 (61%), Gaps = 18/517 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK++ R+ + + ++ + + Y D+RV I+ +TG FR Sbjct: 4 EILAVVEAVSNEKAVPRERIFEALETALATSTKKKYEIEIDVRVAIDRKTGAFETFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ T +IS + A D S+ +G + D + + F R+ Q+AKQVI+QKVREAER Sbjct: 64 VVENVEHPTKEISFEAASFDDDSVQLGDYIEDQIESVTFDRITTQTAKQVIVQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 + +F D GE+++G VK+V VI+DLGN+ + VI R++ + REN RPGDRV+ + Sbjct: 124 AQIVEQFIDNEGELVTGVVKKVNRETVILDLGNNAEAVILREDQLPRENFRPGDRVRGLL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E RG Q+ ++R+ P+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++D Sbjct: 184 YKVAPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKAAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 244 RIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIMDEDAH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ + Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQKKHQEESMASIENFMKYL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E++ RA+E L I + ++ Sbjct: 364 DIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADELRSRAKEALTTIALAKEE 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 L +E+L ++ G++ + L G+ T+EDLA VDDL G Sbjct: 424 SFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVDDLEGIE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G + + +I+ AR +G ++ E Sbjct: 472 -----GLTEQRAGELIMAARNIVGLVKTHNFQQGEEA 503 >gi|167950226|ref|ZP_02537300.1| transcription elongation factor NusA [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589422|gb|ABG77220.1| N utilization substance protein A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 497 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 208/515 (40%), Positives = 320/515 (62%), Gaps = 27/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK +++ ++ + ++ A R G +RVEI+ +GD FR E Sbjct: 4 EILLVVDAVSNEKGVEKVIIFEAIEAALASATRKKNGDDILVRVEIDRTSGDYESFRRWE 63 Query: 68 VVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VVE+ + QI A+++ P I IG + + + ++FGR+A Q+AKQVI+QKV Sbjct: 64 VVEDYSSDEPDAPLRQIIFDAAKEQQPDIQIGDFIEEEIDSIEFGRIAAQAAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + ++D+ GE+++G VKRV+ GNV +DLG + + I R+ I +E +R GDR Sbjct: 124 REAERAKVVAAYEDRKGELVTGVVKRVDRGNVFLDLGGNAEAFIGREHMIPKEAVRVGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+Y++R E RGPQ+ +SRT P+ +++LF +EVPE+ G+++++ +RD G RAK+AV Sbjct: 184 IRGYLYEIRSEVRGPQLFVSRTMPELLIELFKLEVPEVGEGLIEIRGAARDAGLRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + DS IDPVGACVGMRGSRVQAV EL E++DI++W+ + A FVI+A+ PA V +V+ Sbjct: 244 KALDSRIDPVGACVGMRGSRVQAVSNELNGERVDIILWNDNPAQFVIDAMSPADVVSIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V +E LS AIGR GQNVRLASQLTGW ++++ E + + ++ + Sbjct: 304 DEDRHAMDVAVSEENLSQAIGRGGQNVRLASQLTGWELNVMDEAQAAEKSDQESRGFIEA 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ + VDE +A +LV EGF V+E+A V I E+ IE FD++ E++ RA++ L Sbjct: 364 FMEHLGVDEDVATILVQEGFTSVDEVAYVPIEEMLGIEEFDDDLVDELRNRAKDVLLTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ +E+L ++ G+D + L +GI TMEDLA SVDDL+ Sbjct: 424 IAKEEAF--AEPAEDLLTMDGMDKDLAYLLASHGIATMEDLAEQSVDDLMDVE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +II AR W E + Sbjct: 475 ----------GMDEERAGKLIITARAP--WFEDAE 497 >gi|83748667|ref|ZP_00945684.1| N utilization substance protein A [Ralstonia solanacearum UW551] gi|207743364|ref|YP_002259756.1| n utilization substance protein [Ralstonia solanacearum IPO1609] gi|83724629|gb|EAP71790.1| N utilization substance protein A [Ralstonia solanacearum UW551] gi|206594761|emb|CAQ61688.1| n utilization substance protein [Ralstonia solanacearum IPO1609] Length = 491 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|24372786|ref|NP_716828.1| transcription elongation factor NusA [Shewanella oneidensis MR-1] gi|24346871|gb|AAN54273.1|AE015564_4 N utilization substance protein A [Shewanella oneidensis MR-1] Length = 499 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 205/515 (39%), Positives = 321/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGAYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L+ AR +P I G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVIDDNGVALENPYREITLEAARFEEPEIQPGEYIEDQIESVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F+DK GE+I+G VK+ +V+VDLGN+ DGV+ R++ ISRE+ RPGD Sbjct: 122 VREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + +++V +RDPG+RAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V E L+ AIGR GQNVRLA+QLTGW ++++T E+ + Q + + Sbjct: 302 VDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVKS 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM++++VDE A +L EGF +EE+A V +SE+ +I+GFDE+ ++ RA+ + Sbjct: 362 LFMKSLDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDLVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + + SEEL ++ G++ + L GI T+EDLA +DDL+ E Sbjct: 422 ALASEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|300691722|ref|YP_003752717.1| transcription termination/antitermination L factor [Ralstonia solanacearum PSI07] gi|299078782|emb|CBJ51442.1| transcription termination/antitermination L factor [Ralstonia solanacearum PSI07] Length = 491 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + ++++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPTESAQKQEEESSAVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|207723239|ref|YP_002253638.1| n utilization substance protein [Ralstonia solanacearum MolK2] gi|206588435|emb|CAQ35398.1| n utilization substance protein [Ralstonia solanacearum MolK2] Length = 491 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 198/509 (38%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++P + I + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPDVSIDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 RLDVDQEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|315634096|ref|ZP_07889385.1| N utilization substance A [Aggregatibacter segnis ATCC 33393] gi|315477346|gb|EFU68089.1| N utilization substance A [Aggregatibacter segnis ATCC 33393] Length = 498 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 200/513 (38%), Positives = 317/513 (61%), Gaps = 24/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINTKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ AR DP+ IG V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVEEVNNPTKEITLEAARFEDPNAQIGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182 + +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVSPESKGAQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + ++ F Sbjct: 304 EDKHAMDIAVEEANLAQAIGRNGQNVRLATQLTGWVLNVMTTQDLNAKHQAEDDKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421 + A+ +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + Sbjct: 364 IDALEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ +++ + + L ++ G++ I L E I T+EDLA VDDL Sbjct: 424 LAEEEALKKAKIEDRLLNLEGMNRHIAFKLAEKQITTLEDLAEQGVDDLADIE------- 476 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W + Sbjct: 477 ----------GLSAEQAADLIMAAR-NICWFTE 498 >gi|239997162|ref|ZP_04717686.1| transcription elongation factor NusA [Alteromonas macleodii ATCC 27126] Length = 498 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 203/515 (39%), Positives = 316/515 (61%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKV Sbjct: 62 WLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + E++DKVGE+++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR Sbjct: 122 REAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + Sbjct: 302 DEDSNSMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLDL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++DE A +LV EGF +EE+A V SE+ ++EG DEE E++ RAR +L Sbjct: 362 FTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEEMVEELRNRARAFLTTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E L ++ G+ + L G+ +E+LA DD+ E Sbjct: 422 LANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVTDLEELAEQGTDDISDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ ++I+ AR + W +E+ Sbjct: 476 -----------LDEEKAGALIMAAR-NIVWFSEEE 498 >gi|322831213|ref|YP_004211240.1| NusA antitermination factor [Rahnella sp. Y9602] gi|321166414|gb|ADW72113.1| NusA antitermination factor [Rahnella sp. Y9602] Length = 502 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 200/517 (38%), Positives = 315/517 (60%), Gaps = 26/517 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALSTATKKKYEQEIEVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV T +I+L+ A+ DPSID+GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVNEVTQPTREITLEAAQYEDPSIDLGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++G VK+V ++ +DLG N++ VI R++ + REN R GDR++ Sbjct: 122 ERAMVVDQFREQQGEIVTGVVKKVNRDSIALDLGSNAEAVILREDMLPRENFRSGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRNEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 +++ V L+ AIGR GQNVRLASQL W ++++T ++ Q + + Sbjct: 302 KCTMDIAVEASNLAQAIGRNGQNVRLASQLLKQHRGDDKWELNVMTADDLQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + + +DE A +LV EGF+ +EELA V ++E+ I+G DE+T ++ RA+E L Sbjct: 362 AIDTFTKYLAIDEDFATVLVEEGFSTLEELAYVPVNELLEIDGLDEDTVDALRERAKEAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + ++ + + +++L ++ G++ + L G+ T+EDLA VDDL Sbjct: 422 TTLALAQEESLGDKKPADDLLNLAGLERSMAFKLAAQGVCTLEDLAEQGVDDLADIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +I+ AR + W Sbjct: 479 --------------GLTDEQAGELIMAAR-NICWFGD 500 >gi|187928209|ref|YP_001898696.1| transcription elongation factor NusA [Ralstonia pickettii 12J] gi|187725099|gb|ACD26264.1| NusA antitermination factor [Ralstonia pickettii 12J] Length = 491 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 200/509 (39%), Positives = 328/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + D+RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L A+++D I++ V + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAKEQDADIEVDDFVEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ ++++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKVMTGTIKRADKKGLIVETGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T E + + ++ + Q FM Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTPAESAQKQAEESSVVRQLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EERVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|83644100|ref|YP_432535.1| transcription elongation factor NusA [Hahella chejuensis KCTC 2396] gi|83632143|gb|ABC28110.1| N utilization substance protein A [Hahella chejuensis KCTC 2396] Length = 497 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 199/515 (38%), Positives = 326/515 (63%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 E+L + +AV+ EK +D+DV+ + ++ A + Y +DIRV+I+ +TG+ FR Sbjct: 2 NKEILLVVEAVSNEKGVDKDVIFEAIELALATATKKRYEDEEADIRVDIDRKTGEYQAFR 61 Query: 65 LLEVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV+ +++L+ + + G + + + FGR+ Q+AKQ+I+QKV Sbjct: 62 RWLVVDNDAVPALGTELTLEEVHESGLDLKPGDTHEEEVEAVAFGRIGAQAAKQIIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER + +++KVG++++G VK+V N+IVDLG N++ ++ +D+ ISRE R GDR Sbjct: 122 REAERTKIVDSYREKVGDLVNGVVKKVTRDNIIVDLGANAEALLPKDQLISRETYRVGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + D+R + RGPQ++LSR Q +++LF +EVPEI ++++KA +RDPGSRAK+AV Sbjct: 182 VRALLLDIRMDNRGPQLILSRACSQMLIELFRIEVPEIAEEVIEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRGSRVQAV +EL +E+IDIV+W + A VINA+ PA V +++ Sbjct: 242 KTNDGRIDPVGACVGMRGSRVQAVSSELGNERIDIVLWDDNPAQLVINAMAPAEVASIIM 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V ++ L++AIGR GQNV+LAS++TGW I+++TEE+ ++++F Sbjct: 302 DEDSHTMQVAVSEDNLAMAIGRSGQNVKLASEMTGWEINVLTEEQAGQQQEEEFRRYVDC 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ + V+E +A +L +EGF +EE+A V + E+ +I+ FDE+ E++ RA+ L Sbjct: 362 FIDQLGVEEDLAEVLASEGFTSLEEVAYVPMEEMLAIDDFDEDLVTELRKRAKNVLINQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++++ + +E+L ++ G+D + L GI TMEDLA SVDDLL E Sbjct: 422 LASEEQLEKAEPAEDLLNMEGMDRHLAFVLASKGIVTMEDLAEQSVDDLLDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR W E+++ Sbjct: 476 -----------VDEERAAQLIMTARKP--WFEEQQ 497 >gi|90409004|ref|ZP_01217134.1| transcription elongation factor NusA [Psychromonas sp. CNPT3] gi|90309889|gb|EAS38044.1| transcription elongation factor NusA [Psychromonas sp. CNPT3] Length = 500 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 198/518 (38%), Positives = 315/518 (60%), Gaps = 22/518 (4%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ ETG F Sbjct: 1 MNNKEILLVVEAVSNEKGLPREAIFEALESALAIATKKKYEMEIEVRVEIDRETGTFETF 60 Query: 64 RLLEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R V+ E+EN +++ + A P I IG + D +P + F R+ Q+AKQVI+Q Sbjct: 61 RRWLVLAPDAEMENSCAEMTYEAAVYDQPEIQIGEFIEDDIPSVTFDRITTQTAKQVIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 KVREAER + ++ ++ GE+++G VKR+ ++++DLG + + VI RDE + REN RPG Sbjct: 121 KVREAERAQVVEQYIEQKGELVTGVVKRMTRDSILLDLGGNAEAVIFRDEMLPRENFRPG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +YDVR E RG Q+ ++RT P+ +++LF +EVPEI ++ + A +RDPGSRAK+ Sbjct: 181 DRLRGLLYDVRPEARGAQLFMTRTQPEMLIELFRLEVPEIAEEMIDLMAAARDPGSRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D IDP+GACVGMRG+RVQA+ +EL E++DI++W +SA F INA+ PA V + Sbjct: 241 AVKSNDQRIDPIGACVGMRGARVQAISSELGGERVDIILWDDNSAQFAINAMSPAEVVSI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V +E L+ AIGR GQN+RLASQLTGW ++++T + Q + + Sbjct: 301 VVDEDSHSMDIAVEEENLAQAIGRNGQNIRLASQLTGWELNVMTVAQLQEKHQAEADSVI 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +A+ +D A +LV EGF +EE+A V ++E+ I+G DE E++ RA+ L Sbjct: 361 GVFTKALEIDADFAAVLVDEGFTSLEEIAYVPVTELLEIDGLDENMVDELRTRAKNVLAT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ I +E+L ++ G+D+ + GI T+EDLA +VDDL+ E Sbjct: 421 KALAAEENIEGAKPAEDLLALEGLDAHLAYVFASKGIITLEDLAEQAVDDLIDIEE---- 476 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 +++ ++I+ AR + W E Sbjct: 477 -------------LNEEKAGTLIMAAR-NICWFSNETE 500 >gi|332992817|gb|AEF02872.1| transcription elongation factor NusA [Alteromonas sp. SN2] Length = 497 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 314/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGDIEVRVSIDRTSGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++ + EN +I+L A+ +P + +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WLIIPDDQEQENPFAEITLSAAQVEEPELQLGDYVEDQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + E++DKVGE+++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR Sbjct: 122 REAERAQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV EL E++DIV+W +SA FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENSAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + Sbjct: 302 DEDSHMMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNI 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F ++VDE A +LV EGF +EE+A V SE+ +I+G DE+T E++ RAR +L Sbjct: 362 FTAGLDVDEEFAAMLVDEGFTTLEEVAYVPASELLAIDGLDEDTVEELRNRARAFLTTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E L + G+ + L GI +E+LA D++ E Sbjct: 422 LANEESLEGAEPTEALLGLEGMSKHVAYVLASRGITDLEELAEQGTDEISDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + ++I+ AR + W +E Sbjct: 476 -----------LDEATAGALIMAAR-NIVWFNEE 497 >gi|163857446|ref|YP_001631744.1| transcription elongation factor NusA [Bordetella petrii DSM 12804] gi|163261174|emb|CAP43476.1| N utilization substance protein A [Bordetella petrii] Length = 492 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 311/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + ++IRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKEDAEIRVAIDRETGSHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDALELVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISGT+KR++ G++IV+ G + + R E I +EN R GDR+++ Sbjct: 124 AEREQVLNDFLDRGETIISGTIKRMDKGDIIVETGKIEARLPRSEMIPKENFRVGDRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLSRQETERAGLRAAFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L S Sbjct: 424 EER---LETAQDLLELEGMTPELAAKLAERQVLTRDDLAELATDELAEIS---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + Q +I+ AR W ++E Sbjct: 471 -------GLDEQQASELIMRARAH--WFDEE 492 >gi|113868282|ref|YP_726771.1| transcription elongation factor NusA [Ralstonia eutropha H16] gi|113527058|emb|CAJ93403.1| transcription pausing factor L [Ralstonia eutropha H16] Length = 491 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 334/509 (65%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L ARD +PSI++G + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDELGLQEPDKQILLFEARDENPSIELGDFIEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLATELTGWQINIMTQEESAQKQAEESDVVRKLFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +S+I+ AR W Sbjct: 472 -------GVSEEEAKSLIMKAREH--WFN 491 >gi|127513756|ref|YP_001094953.1| transcription elongation factor NusA [Shewanella loihica PV-4] gi|126639051|gb|ABO24694.1| NusA antitermination factor [Shewanella loihica PV-4] Length = 499 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 199/515 (38%), Positives = 317/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK++ R+ + + ++ A + Y ++RV I+ +TG+ FR Sbjct: 2 NKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ AR +P I +G + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAER + +F +K GE+I+G VK+ +V+VDLGN+ D V+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT P +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A FVINA+ PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQNVRLA+QL+GW ++++T E+ Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ A++VDE A +L EGF +EE+A V SE+ I+GFDEE ++ RA+ + Sbjct: 362 LFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G++ + L G+ T+EDLA +DD Sbjct: 422 ALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDD----------- 470 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + +++ +I+ AR + W +E Sbjct: 471 ------LIEIEELTEEKAGELIMAAR-NICWFGEE 498 >gi|148976708|ref|ZP_01813395.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3] gi|145964059|gb|EDK29317.1| transcription elongation factor NusA [Vibrionales bacterium SWAT-3] Length = 495 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 202/512 (39%), Positives = 320/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VE VEN T +ISL+ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEAVEVVENPTKEISLEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V +I+DLGN+ + VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGVVKKVNRDTIILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFITRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLQKKHQEEAVASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A LLV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + Sbjct: 362 HLDIEEDFAQLLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W E+ Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495 >gi|254787150|ref|YP_003074579.1| transcription elongation factor NusA [Teredinibacter turnerae T7901] gi|237684737|gb|ACR12001.1| transcription elongation / termination protein, N utilization substance A [Teredinibacter turnerae T7901] Length = 496 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 209/514 (40%), Positives = 328/514 (63%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L +ADAV+ EK +DRDV+ + ++ A + Y SDI V I+ TGD R Sbjct: 2 KKEILLVADAVSNEKGVDRDVIFQAIELALATATKKRYDEDSDIEVLIDRRTGDYVTKRR 61 Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV++ Q +L+ A ++D ++ G V + + ++FGR+A Q+AKQVI+QKVR Sbjct: 62 WLVVDDDTLAELGTQFTLEEAHEKDTALVAGDVYEEVVENVEFGRIAAQTAKQVIVQKVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +++ +VGE++SG+VK+V N+IVDLGN+ +G++ R+E + RE R DRV Sbjct: 122 EAERAQIVDQYRSRVGELVSGSVKKVTRDNIIVDLGNNAEGLLPREELVGREVFRMNDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + DVR E RGPQ+ LSR + +++LF +EVPEI ++ +K +RDPGSRAK+AV Sbjct: 182 RALLMDVRPEARGPQLYLSRACSEMLIELFKIEVPEIAEEVIALKGAARDPGSRAKIAVS 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL +E+IDIV+W + A FVINA+ PA + +VLD Sbjct: 242 TNDGRIDPVGACVGMRGSRVQAVSNELGNERIDIVLWDDNPAQFVINAMAPAEIESIVLD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +++ V ++ L+ AIGR GQNVRLAS+LTGW I++++ E+ + + ++ + F Sbjct: 302 EETHAMDLAVDEDNLAQAIGRGGQNVRLASELTGWEINVMSVEQWNEKQAQEAGSSKEVF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+A++VDE +A +LV EGF +EE+A V + E +IEGFDE+ A E++ RA++ L + Sbjct: 362 MEALDVDEDVADVLVDEGFTTLEEVAYVPLEEFLAIEGFDEDIANELRSRAKDALLTQAL 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 +++ +E+L ++ G+D+++ L G+ MEDLA SVD+L+ Sbjct: 422 ATEEQTVGQEPAEDLLTMEGMDNELAFVLASRGVTCMEDLAEQSVDELMEID-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ ++I+ AR W + Sbjct: 474 ---------GMDEERAAALIMKAREP--WFADGE 496 >gi|37528349|ref|NP_931694.1| transcription elongation factor NusA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787787|emb|CAE16902.1| N utilization substance protein A (nusA protein) (L factor) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 502 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 316/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQDIDVRVSIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ AR +P ID+G D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAARFEEPEIDLGSYTEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIITSVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 302 KCTMDVAVESNNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I E+ IEG DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEEFATVLVEEGFSTLEELAYVPIKELLEIEGLDEETIEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +EEL ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLSDKQPTEELLNLTGMNRTLAFDLAARGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNDEKTGELIMAAR-NICWFGDD 501 >gi|126664888|ref|ZP_01735872.1| transcription elongation factor NusA [Marinobacter sp. ELB17] gi|126631214|gb|EBA01828.1| transcription elongation factor NusA [Marinobacter sp. ELB17] Length = 497 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 202/512 (39%), Positives = 322/512 (62%), Gaps = 23/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L + ++V+ EK +++DV+ + ++ AA+ + +DIRV I+ TG+ FR Sbjct: 4 EILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFDDEDADIRVSIDRRTGEYDTFRRW 63 Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV+ +++ + A D P + G + + + + FGR+ Q+AKQ+I QKVRE Sbjct: 64 LVVDNDAVPALGTELTFQEAEDISPDLQPGDMHEERIDSVAFGRIGAQAAKQIIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + ++ +VGE++SGTVK+V NVIVDLGN+ + ++ R+ I+RE R GDRV+ Sbjct: 124 AERTKIVDSYRGRVGELVSGTVKKVTRDNVIVDLGNNAEALLPREHLIARETFRMGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + ++R + RGPQ++LSR+ + +++LF +EVPEI +++++ +RDPGSRAK+AV + Sbjct: 184 SLLLEIRTDHRGPQLILSRSDSKMLIELFRIEVPEIAEELIEIRGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV+W + A VINA+ PA V +V+DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSNELNGERVDIVLWDDNPAQLVINAMAPAEVASIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIGR GQNVRLA++LTGWT++++TEEE ++++ + F Sbjct: 304 DRHTMDVAVAADNLAQAIGRNGQNVRLATELTGWTLNVMTEEEAGERQEQEQGRLLEHFT 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + +++DE A +L+ EGF+ +EE+A + + E+ +IEGFDEET E++ RA++ L + Sbjct: 364 KHLDIDEEFAGVLIDEGFSSIEEVAYIPMEEMLAIEGFDEETVTELRKRAKDALLNQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + +E+L ++ GID + L GI+TMEDLA SV DLL Sbjct: 424 NEEALDGAEPAEDLLAMEGIDRGLAFKLAGMGIRTMEDLAEQSVGDLLEIE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W E + Sbjct: 475 --------GMNEERAGQLIMTARAP--WFEDQ 496 >gi|52425500|ref|YP_088637.1| transcription elongation factor NusA [Mannheimia succiniciproducens MBEL55E] gi|52307552|gb|AAU38052.1| NusA protein [Mannheimia succiniciproducens MBEL55E] Length = 501 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 206/516 (39%), Positives = 316/516 (61%), Gaps = 26/516 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVAINQKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV N T +I+L+ A+ DP I +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVDEVVNPTKEITLEAAQFEDPDIQLGDYVEDQIDSVAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-------DGVIRRDETISRENLRPGD 180 ++ +F+ + G+I++GTVK+V ++I+DL + + VI R++ + REN RPGD Sbjct: 124 NKVVEQFRSEEGKIVTGTVKKVTRDSIILDLTGNKEDPAKAEAVITREDMLPRENFRPGD 183 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV+ +Y V E +G Q+ ++R P + +LF +EVPEI ++++K SRD G RAK+A Sbjct: 184 RVRGVLYKVNPESKGAQLFVTRAKPVMLEELFRLEVPEIGEELIEIKGASRDAGLRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V +V Sbjct: 244 VKSNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVNSIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E L+ AIGR GQNVRLA+QLTGWT++++T EE Q + N+ Sbjct: 304 VDEDNHSMDIAVEQENLAQAIGRNGQNVRLATQLTGWTLNVMTTEELQQKHQAEDNKVLN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEG 419 FM ++ +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA++ L Sbjct: 364 LFMTSLELDEDFAQLLIDEGFSSLEELAYVPVSELTAIDGLEDEDLVEELQNRAKDALTA 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + ++ +++ V + L ++ G++ I L E IKT+E+LA VDDL E Sbjct: 424 KAVAEEEALKQAEVEDRLLNLEGMERHIAFRLAEKNIKTLEELAEQGVDDLADIEE---- 479 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 480 -------------LSAEKAADLIMAAR-NICWFGDE 501 >gi|114321098|ref|YP_742781.1| transcription elongation factor NusA [Alkalilimnicola ehrlichii MLHE-1] gi|114227492|gb|ABI57291.1| NusA antitermination factor [Alkalilimnicola ehrlichii MLHE-1] Length = 498 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 222/516 (43%), Positives = 329/516 (63%), Gaps = 25/516 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A + EK +DR+V+ + ++ A R + D RVE+N TGD S FR Sbjct: 4 EILLVVEATSNEKGVDREVIFEAIEAALASATRKRHPEDIDARVEVNRNTGDYSTFRRWW 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE +VE+ QI+L+ AR R P I++G + +P+ ++FGR+A Q+AKQVI+QKVRE Sbjct: 64 VVESDEDVESPARQITLEEARQRQPDIEVGECLEEPMESVEFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + F+D++GE+++GTVKR+E G+VI+DLG + + +I R+ I RE +R DR++ Sbjct: 124 AERAKVVEAFQDRIGELVTGTVKRLERGSVIMDLGGNAEALIPREAMIPREAVRREDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DVR E RGPQ+ +SRT P+F+V+LF +EVPE+ ++++ +RDPG RAK+AV + Sbjct: 184 GYLKDVRPEPRGPQLFVSRTAPEFLVELFKLEVPEVGQELIEIMGAARDPGVRAKIAVRA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVGMRGSRVQAV EL E+IDI++W + A FVINAL PA V +V+DE Sbjct: 244 LDPRIDPVGACVGMRGSRVQAVSNELAGERIDIILWDDNPAQFVINALAPAEVESIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V +EQLS AIGR GQNVRLAS+LTGW ++++T EE Q++ + Q F Sbjct: 304 DRHSMDIAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKNQEEAAQYQQLFQ 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE IA +LV EGF+ +EE+A V +E+ +E FDE+ E++ RAR+ L Sbjct: 364 EKLDVDEEIAAILVQEGFSSLEEVAYVPAAELLEVEEFDEDIVDELRARARDVLVSEAEE 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 + E +E+L ++ G+D + AL G+ TMEDLA SVD+L+ Sbjct: 424 RESAGTE--PAEDLLTMEGMDEDLARALAARGVCTMEDLAEQSVDELMEIE--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G + + +I+ AR W ++ + Sbjct: 473 --------GMDETRAGQLIMKAREP--WFADQQDDE 498 >gi|299067340|emb|CBJ38537.1| transcription termination/antitermination L factor [Ralstonia solanacearum CMR15] Length = 491 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 199/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++PS+++ + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSVNLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTNWQINIMTPAESAQKQAEESSTVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|332141181|ref|YP_004426919.1| transcription elongation factor NusA [Alteromonas macleodii str. 'Deep ecotype'] gi|327551203|gb|AEA97921.1| transcription elongation factor NusA [Alteromonas macleodii str. 'Deep ecotype'] Length = 498 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 202/515 (39%), Positives = 315/515 (61%), Gaps = 22/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ +GD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKNEGEIEVRVSIDRTSGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN +I++ A+ +P I +G V + + + F R+ Q+AKQVI+QKV Sbjct: 62 WLVIPDDQEQENPFAEITISAAQIDEPEIQLGDYVEEQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + E++DKVGE+++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR Sbjct: 122 REAERQQMIAEYEDKVGELVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKSAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLASQLTGW ++++T E+ + +++ + Sbjct: 302 DEDSNNMDVAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVEDLNKKHEEENAKVLNL 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +++DE A +LV EGF +EE+A V SE+ ++EG DE+ E++ RAR +L Sbjct: 362 FTAGLDIDEEFASVLVDEGFTTLEEVAYVPASELLAVEGLDEDMVEELRNRARAFLTTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E L ++ G+ + L G+ +E+LA DD+ E Sbjct: 422 LANEESLEGAEPTEALLNLEGMSKHVAYVLASRGVIDLEELAEQGTDDISDIDE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W +E+ Sbjct: 476 -----------LDEEKAGELIMAAR-NIVWFSEEE 498 >gi|238897563|ref|YP_002923242.1| transcription pausing; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465320|gb|ACQ67094.1| transcription pausing; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 494 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 205/512 (40%), Positives = 315/512 (61%), Gaps = 21/512 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++R++IN +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYDQDVEVRIKINRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ V + T +I+L+ A+ +D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLAVDIVTSPTREITLEAAQFQDSQIQLGDYVEDQIESVIFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+I++G VK+ N+ +DLGN+ +G+I R++ + REN+R GDR++ Sbjct: 122 ERAMLVEQFRQHQGKIVTGVVKKATRENIYLDLGNNTEGIIGREDMLPRENIRTGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +++LF +EVPEI ++++KA +RDP SRAK+AV S+ Sbjct: 182 VLYDVRPEARGAQLFISRSRPEMLIELFRIEVPEIGEELIEIKAAARDPASRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDI++W + FVINA+ PA V V +DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIILWDDNPVQFVINAMAPAEVVSVTIDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLAS+L+GW ++++T EE Q + + F+Q Sbjct: 302 KHTMDIAVEATHLAQAIGRNGQNVRLASRLSGWELNVMTAEELQSKNQAEVDSIVHTFIQ 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N+D+ A +L+ EG + +EEL CV I E+ IEG DEET ++ RA++ L + + Sbjct: 362 HLNIDKEFAEVLIEEGLSSLEELVCVPIEELLEIEGLDEETVNALRDRAKKTLTTLALA- 420 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 + S++L ++P +DSKI L +GI T+EDLA S+DDL Sbjct: 421 -ENFSGNSPSDDLLNLPNMDSKIAFRLSASGISTLEDLAEQSIDDLADIE---------- 469 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G D+ +I+ AR + W + Sbjct: 470 -------GLSNDKAGELIMAARG-ICWFSDDN 493 >gi|212634073|ref|YP_002310598.1| transcription elongation factor NusA [Shewanella piezotolerans WP3] gi|212555557|gb|ACJ28011.1| Transcription termination factor NusA [Shewanella piezotolerans WP3] Length = 499 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 196/515 (38%), Positives = 315/515 (61%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + ++ A + Y ++RV I+ +TG FR Sbjct: 2 NKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGGYETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ +EN +I+L+ A DP I++GG + D + + F R+ Q+AKQVI+QK Sbjct: 62 WMVVEDTGEPLENPFREITLEAAVYDDPEIELGGFIEDEIDSVAFDRITTQTAKQVIVQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGD 180 VREAER + +F+D+ GE+I G VK+ +V+VDLG N+DGV+ +++ ISRE+ RPGD Sbjct: 122 VREAERAQIVDQFRDREGELIVGVVKKSNRESVVVDLGSNADGVLFKEDLISRESFRPGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RV++ +Y VR E RG Q+ L+RT + +++LF +EVPEI + ++++ +RDPGSRAK+A Sbjct: 182 RVRALLYSVRPEARGAQLFLTRTKSEMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP+GACVGMRG+RVQAV EL E++DIV+W + A +VIN + PA V ++ Sbjct: 242 VKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINCMAPADVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V + L+ AIGR GQN+RLA+QL+GW ++++T ++ Q + + Sbjct: 302 VDEDNHSMDIAVEADSLAQAIGRNGQNIRLATQLSGWELNVMTVDDMKAKHQAESAKVVN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+++++VD A +L EGF +EE+A V SE+ IEGFDE+ ++ RA+ + Sbjct: 362 LFIESLDVDSEFAQVLADEGFTSLEEIAYVPSSELLEIEGFDEDIVESLRERAKAAISTR 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + SE+L ++ G+D + + G+ T+EDLA +DDL+ E Sbjct: 422 ALATEEALDGAEPSEDLLALEGLDRHLAFVMASKGVITLEDLAEQGIDDLIEIEELTEEK 481 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +I+ AR + W +E Sbjct: 482 -----------------AGELIMAAR-NICWFGEE 498 >gi|256821530|ref|YP_003145493.1| NusA antitermination factor [Kangiella koreensis DSM 16069] gi|256795069|gb|ACV25725.1| NusA antitermination factor [Kangiella koreensis DSM 16069] Length = 497 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 206/514 (40%), Positives = 323/514 (62%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + +V+ + ++ A + +G D+RV+I+ TGD +RL Sbjct: 3 NKEILLVVEAVSNEKDVQPEVIFGAIEAALATATKKKHGVDIDVRVDIDRHTGDYDTYRL 62 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + VE+ + +L A+ DP I IG V + + ++FGR+A Q+AKQVI+QKVR Sbjct: 63 WTVVADDAVEDPLTETTLSAAQVEDPEIQIGDYVEEQIESIEFGRIAAQTAKQVIVQKVR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 EAER + F+D+VG++++G VK+V + +DLG N++ VI+R+E + RE +R GDRV Sbjct: 123 EAERAKTVEAFRDRVGDLVTGVVKKVTRDYIFIDLGSNAEAVIQREEMMPRETVRTGDRV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y + E RGPQ+ +SRT P+ + +LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 183 RGLLYAISTENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDPGSRAKVAVK 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRG+RVQAV EL E+IDIV++ + A +VINA+ PA V +V+D Sbjct: 243 TNDKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAPAEVVSIVVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V ++QL+ AIGR GQN+RLAS+LTGW ++++TEE+ + Q + F Sbjct: 303 EDRRSMDIAVNEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQSETESIVSMF 362 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LV EGF +EE+A V SE+ IEGFDE+ ++ RA++ L I Sbjct: 363 VADLGVDEDLADILVQEGFTTLEEVAYVPQSEMLEIEGFDEDLVDALKSRAKDVLLTKAI 422 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ E+ +E+L ++ G+D + L GI TMEDLA SV Sbjct: 423 ANEEQLEEVEPAEDLLTMDGMDRHLAFVLASKGIVTMEDLAEQSV--------------- 467 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 D + +++ +I+ AR W E+++ Sbjct: 468 --DELIEIEELDEERAAKLIMTARAP--WFEEQE 497 >gi|332532410|ref|ZP_08408288.1| transcription termination protein NusA [Pseudoalteromonas haloplanktis ANT/505] gi|332038053|gb|EGI74500.1| transcription termination protein NusA [Pseudoalteromonas haloplanktis ANT/505] Length = 499 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 189/514 (36%), Positives = 320/514 (62%), Gaps = 24/514 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ ++ + + ++ A + + ++RV I+ +TGD FR + Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIEVRVAIDRKTGDYDTFRRWQ 63 Query: 68 ---VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAAVLEDGSLENPYSEITLEAAQVEEPDLQMGDYVEEQIDSIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER +KD+ GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR Sbjct: 124 REAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDP+GACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+ Sbjct: 244 KSNDKRIDPIGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T E+ + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVEDMRTKNEAESDKLLNL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDLLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLDGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 -----------LSSEKAGELIMAAR-NICWFADE 499 >gi|42144|emb|CAA25200.1| unnamed protein product [Escherichia coli] Length = 494 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 192/511 (37%), Positives = 304/511 (59%), Gaps = 20/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R+++ + + Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDSCRVKTFALATAFVA 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 R G Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 CSIPFAR-NGGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 241 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 300 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + F + Sbjct: 301 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 360 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L I Sbjct: 361 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 420 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 421 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 471 -------GLTDEKAGALIMAAR-NICWFGDE 493 >gi|254490591|ref|ZP_05103777.1| NusA N-terminal domain family [Methylophaga thiooxidans DMS010] gi|224464335|gb|EEF80598.1| NusA N-terminal domain family [Methylophaga thiooxydans DMS010] Length = 505 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 208/524 (39%), Positives = 323/524 (61%), Gaps = 25/524 (4%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N E+L + DA++ EK + ++V+ + ++ A R Y D V+I+ TGD F Sbjct: 1 MNNKEILLVVDAMSNEKGVSKEVIFQAIEAALAMATRKRYEMALDAHVQIDRVTGDYETF 60 Query: 64 RLLEVVEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 R +VE+ +E+ QI+L A + ++GG + +P+ ++FGR+A Q+AKQVI Sbjct: 61 RQWLIVEDDDEEALESEETQITLSEALKKQDDAEVGGYIREPMESVEFGRIAAQTAKQVI 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177 +QKVREAER + +++KVG++I GTVKRV+ GNV +DLG + + + R+E I RE+ R Sbjct: 121 VQKVREAERAQVVDMYREKVGQMIHGTVKRVDRGNVTLDLGGNAEAFLPREEMIPRESFR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ Y+ ++R E RGPQ+++SR P+ +++LF +EVPEI +G++ +K +RDPG RA Sbjct: 181 TGDRIRGYLKEIRPEGRGPQLIVSRIAPELLIELFTLEVPEISDGMIDIKGAARDPGLRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV + +S IDPVGACVGMRGSRVQAV EL E++DI++W D A F INA+ PA V Sbjct: 241 KIAVLAKESRIDPVGACVGMRGSRVQAVTNELGGERVDIILWDEDVARFAINAMAPAEVL 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V QLS AIGR GQNVRLASQLTGW +++++ + + + E Sbjct: 301 SIVVDEDAHSMDIAVEDGQLSQAIGRSGQNVRLASQLTGWELNVMSSSDADKKAETEIGE 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q FM+ ++VDE +A +L EGF+ +EE+A V E+ IE FD++ E++ RAR+ L Sbjct: 361 LIQDFMKDLDVDEDVALILAQEGFSSLEEVAYVPEQEMLDIEEFDDDIVAELRSRARDVL 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++++ S+EL + GI + + L N + T++DLA +VD+L+ Sbjct: 421 LTRAIASEEQLESAEPSQELLDMEGITKDLALTLASNSVTTLDDLADLAVDELVEI---- 476 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 G ++Q ++I+ AR W E+ E Sbjct: 477 -------------GGMKEEQAAALIMKARES--WFANEQTDAGE 505 >gi|296533459|ref|ZP_06896041.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC 49957] gi|296266214|gb|EFH12257.1| transcription elongation factor NusA [Roseomonas cervicalis ATCC 49957] Length = 525 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 283/522 (54%), Positives = 370/522 (70%), Gaps = 18/522 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R ELLQ+A+AVA EK I+RD VL M +IQKA R+ YG DIR I+ TG++ L R Sbjct: 9 RPELLQVAEAVAREKMIERDEVLEAMEQAIQKAGRAKYGHEKDIRAVIDRRTGEVKLSRW 68 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVVE+ VEN QI ++A+ P I +G + DPLPP+DFGR+A Q+AKQVI+Q+VR Sbjct: 69 TEVVEQEPVENEATQIPHRIAQKIKPGIAVGEFIVDPLPPIDFGRIAAQTAKQVIVQRVR 128 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER +Q+ E+KD+VGEII+G VKR EYGN++VDLG ++ ++RRDETI RE R GDRV+ Sbjct: 129 EVERSKQFNEYKDRVGEIINGVVKRTEYGNLMVDLGRAEALLRRDETIPREAFRNGDRVR 188 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YIYDVR E RGPQ+ LSRTHP F+ KLF EVPEIY+GI+++KAV+RDPGSRAK+AV S Sbjct: 189 AYIYDVREEPRGPQIFLSRTHPGFLAKLFAQEVPEIYDGIIEIKAVARDPGSRAKMAVIS 248 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D+ TFV+NAL PA V+KVV+D+ Sbjct: 249 RDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSADNPTFVVNALAPAEVSKVVMDD 308 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D R+EV+VP +QLSLAIGRRGQNVRLASQLT W IDI+TE E+S RQ++F +RT F+ Sbjct: 309 DSKRVEVVVPDDQLSLAIGRRGQNVRLASQLTRWDIDILTEAEESERRQEEFRKRTGLFV 368 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +A++VD++IA LLV EGF +EEL V ++A IEGFDE A E++ R++ +L+ D Sbjct: 369 EALDVDDVIAGLLVTEGFGSIEELMEVPDEDLAEIEGFDENVAAELKRRSQAFLDRRDQE 428 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 L +K + LGV + + G + V LGE G+KT++DLA + D+L+ Sbjct: 429 LDEKRQALGVEDAVAEAGGFTPAMLVTLGEKGVKTLDDLADLAADELIEI---------- 478 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 L + +D ++I+ AR W +E D A Sbjct: 479 ----LGTEAVDEDTANAIIMAAREH--WFAQEGNQDGGAAQA 514 >gi|293390259|ref|ZP_06634593.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950793|gb|EFE00912.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 498 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 198/513 (38%), Positives = 315/513 (61%), Gaps = 24/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182 + +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ F Sbjct: 304 EDKHSMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421 + + +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + Sbjct: 364 IDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAQA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 424 LAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDLADIEE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W + Sbjct: 478 -----------LGAEQAADLIMAAR-NICWFTE 498 >gi|17546007|ref|NP_519409.1| transcription elongation factor NusA [Ralstonia solanacearum GMI1000] gi|17428302|emb|CAD14990.1| probable n utilization substance transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 491 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 199/509 (39%), Positives = 329/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + ++RV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVEVRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++PSI++ + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDDAGLQEPDKQILLFEAREQNPSINLDEFIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GT+KR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTIKRADKKGLIVESGRVEALLARDQMIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRTARGPQIELSRTCPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEVGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LT W I+I+T E + + ++ + + FM+ Sbjct: 304 KHSMDVVVDEENLAVAIGRSGQNVRLASELTSWQINIMTPAESAQKQAEESSTVRKLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFTSLEEVAYVPLQEMLEIEAFDEDTVNELRNRARDVLLTMELAK 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ VS++L + G+ ++ L E I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--KVSQDLRDLEGLTPELIGKLAEGNIQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++Q +++I+ AR W Sbjct: 472 -------GVDEEQAKALIMKAREH--WFS 491 >gi|315126157|ref|YP_004068160.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913] gi|315014671|gb|ADT68009.1| transcription elongation factor NusA [Pseudoalteromonas sp. SM9913] Length = 499 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 190/514 (36%), Positives = 318/514 (61%), Gaps = 24/514 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ ++ + + ++ A + + D+RV I+ +TGD FR + Sbjct: 4 EILLVAEAVSNEKAVPKEKIFEALEFALATATKKKHDGEIDVRVAIDRKTGDYDTFRRWQ 63 Query: 68 VVE-----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + E +EN +I+L+ A+ +P + +G V + + + F R+ Q AKQVI+QKV Sbjct: 64 IAEVLEDGSLENPYSEITLEAAQVEEPDLKMGDYVEEQIESIKFDRITTQMAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER +KD+ GE+++G VK+ +++DLGN+ + VI RD+ + REN RPGDR Sbjct: 124 REAERALVVEAYKDQEGELVTGVVKKATRDAIVLDLGNNAEAVIYRDDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ +Y+V+ E RG Q+ ++R+ P+ +++LF +EVPEI +++++A +RDPGSRAK+AV Sbjct: 184 IRGLLYEVKPEARGAQLFVTRSKPEMLMELFRIEVPEIGEEMIELRAAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV +EL E++DIV++ + A FVINA+ PA V +V+ Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIVLYDDNPAQFVINAMAPAEVASIVM 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T +E + + ++ Sbjct: 304 DEDTHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVDEMRAKNEAESDKLINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + +++D+ A LL+ EGF+ +EE+A V SE I+G DEET ++ RA++ L Sbjct: 364 FTENLDIDDEFASLLINEGFSTLEEVAYVPASEFLEIDGLDEETVDVLRSRAKDALTTKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G++ + + G+ T+EDLA +D+L+ +E Sbjct: 424 LKTEESLEGAEPAEDLLALEGLERHLAFVMASKGVVTLEDLAEQGIDELVDITE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++ +I+ AR + W E Sbjct: 478 -----------LSSEKAGELIMAAR-NICWFADE 499 >gi|119944578|ref|YP_942258.1| NusA antitermination factor [Psychromonas ingrahamii 37] gi|119863182|gb|ABM02659.1| NusA antitermination factor [Psychromonas ingrahamii 37] Length = 499 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 192/514 (37%), Positives = 315/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK + R+ + + ++ A + Y ++RVEI+ E+G FR Sbjct: 2 NKEILLVVEAVSNEKGLPREAIFQALESALAIATKKKYENDIEVRVEIDRESGKFDTFRR 61 Query: 66 LEVVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E ++EN +++ + A P I +G + D + + F R+ Q+AKQVI+QKV Sbjct: 62 WLVLEPDAKMENPCKEMTFEAAEYETPEIKVGDYIEDEIESVTFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + ++ ++ GE+I+G VKR+ N+++DLG + + VI RDE + REN RPGDR Sbjct: 122 REAERAQVVAQYAEQEGELITGIVKRMNRDNILLDLGGNAEAVIFRDEMLPRENFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ ++ VR E RG Q+ ++RT P+ +++LF +EVPEI ++ + +RDPGSRAK+AV Sbjct: 182 LRGLLFAVRPEARGAQLFVTRTQPEMLIELFRLEVPEIAEEMIDLMGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV +EL E++DI++W + A + INA+ PA V VV+ Sbjct: 242 KSNDKRIDPVGACVGMRGARVQAVSSELGGERVDIILWDENPAQYAINAMSPADVVSVVI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V ++ L+ AIGR GQNVRLASQLTGW ++++T + Q + Sbjct: 302 DEDAHSMDIAVEEDNLAQAIGRNGQNVRLASQLTGWELNVMTVVQLREKHQAEAASVISV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+ +DE A +LV EGF+ +EE+A V ++E+ +I+G DE E++ RA+++L Sbjct: 362 FTEALEIDEEFAAVLVEEGFSSLEEIAYVPLNELLAIDGLDEALIDELRVRAKDFLATKA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + + +++L ++ G++ + L GI T+E+LA +VDDLL E Sbjct: 422 LVDEEGLEDTKPADDLLALEGLEGHLAYVLASKGIITLENLAEQAVDDLLEIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W ++ Sbjct: 476 -----------LNEAKAGELIMAAR-NICWFSED 497 >gi|86148618|ref|ZP_01066901.1| transcription elongation factor NusA [Vibrio sp. MED222] gi|218710446|ref|YP_002418067.1| transcription elongation factor NusA [Vibrio splendidus LGP32] gi|85833609|gb|EAQ51784.1| transcription elongation factor NusA [Vibrio sp. MED222] gi|218323465|emb|CAV19642.1| Transcription elongation protein nusA [Vibrio splendidus LGP32] Length = 495 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEAVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN+ + VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 THSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + Sbjct: 362 HLDIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W E+ Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495 >gi|307825109|ref|ZP_07655330.1| transcription termination factor NusA [Methylobacter tundripaludum SV96] gi|307733857|gb|EFO04713.1| transcription termination factor NusA [Methylobacter tundripaludum SV96] Length = 505 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 213/521 (40%), Positives = 324/521 (62%), Gaps = 27/521 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + D + EK I++++V + +++ A + RV IN +TGD +R+ Sbjct: 3 NKEILLVVDVFSNEKDIEKEIVFQAIESALEAATIKRHANQIKARVSINRKTGDYVTYRV 62 Query: 66 LEVVE-------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 EVV+ +VE Q+ L+VAR +P + IG +V + + +DFGR+A Q+AKQVI Sbjct: 63 WEVVDANSQIDGDVEFPETQVLLEVARFDNPDVQIGDLVEEEIESVDFGRIAAQTAKQVI 122 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLR 177 I KVREAER + ++ +VGE+I+G VKR+E G+V +DLG + I +++ I RE +R Sbjct: 123 IHKVREAERKKIVDAYQSRVGELITGIVKRIEKGSVYLDLGGHVEAYIAKEDMIPREAIR 182 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR++ Y+ DVR E RGPQ+ +SRT P+ ++ LF +EVPE+ G+++V +RDPGSRA Sbjct: 183 IGDRIRGYLKDVRSEPRGPQLFVSRTAPELLIALFRLEVPEVGEGLIEVMGAARDPGSRA 242 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV +D +DPVGACVGMRGSRVQ+V EL E++DI++W+P A FVINA+ PA + Sbjct: 243 KIAVKGNDPRLDPVGACVGMRGSRVQSVSNELAGERVDIILWNPSDAQFVINAMSPAEIQ 302 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V + LS AIGR GQNVRLA+QLTGW +++I + N + + ++ Sbjct: 303 SIVVDEDKHSMDLAVSSDNLSQAIGRGGQNVRLATQLTGWELNVIDASKAEQNSEAEADK 362 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q F+ +++DE IA +LV EGF VEE+A V +SE+ IEGFDEE ++ RA++ L Sbjct: 363 IKQMFIDQLDIDEDIALILVEEGFNTVEEIAYVPVSEMLEIEGFDEELVNALRSRAKDAL 422 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++KI +++L + G+D + + GI TM+DLA SVDDL Sbjct: 423 LISAIAAEEKIETAEPAQDLLEMEGMDRDLAYDMASQGIITMDDLAEQSVDDL------- 475 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 L+ G +D+ +I+ AR W +E+ + Sbjct: 476 ----------LNFPGINEDRAAKLIMKAREP--WFAEEQAS 504 >gi|91788290|ref|YP_549242.1| NusA antitermination factor [Polaromonas sp. JS666] gi|91697515|gb|ABE44344.1| NusA antitermination factor [Polaromonas sp. JS666] Length = 506 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 200/523 (38%), Positives = 322/523 (61%), Gaps = 24/523 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVDAISREKNVERDVVFGAVELALASATKKVYEDGVDIRVVVDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + + AR+ P I+ G + P+ + GR+ Q+AKQVI+QK+ Sbjct: 62 WLVVPDEAGLQNPEAEELVSDAREEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRMDKGDIIVESGRVEGRLRRSDMIPKENLRAGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSRT P++M++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDTTLRGAPIILSRTAPEYMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L+++IGR GQNVRLA++LTGW I+I+T +E + + + + + F Sbjct: 302 EERHAMDVVVDEENLAISIGRGGQNVRLAAELTGWKINIMTADESAQKQATETDTSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L++EGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILISEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ GVS+ L + GI ++ L E G+ T +DLA +VD+L + Sbjct: 422 AKEENAE--GVSQNLRDVEGITPELIAKLTEAGVHTRDDLADLAVDELTDITGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 D+ +++I+ AR W + A Sbjct: 474 -----------SADEAKALIMTARAH--WFTNDASDTAAPATA 503 >gi|251792720|ref|YP_003007446.1| transcription elongation factor NusA [Aggregatibacter aphrophilus NJ8700] gi|247534113|gb|ACS97359.1| transcription elongation factor NusA [Aggregatibacter aphrophilus NJ8700] Length = 498 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 199/513 (38%), Positives = 316/513 (61%), Gaps = 24/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYEVDVRVTINPKTGEFDTFRRWA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T +I+L+ AR +P I +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVENVMSPTKEITLEAARFENPDIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182 + +F+ K G+I++ TVK+ ++I+D+ ++ V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRAKEGQIVTATVKKSNRDSIILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVNPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE S Q + N+ F Sbjct: 304 EDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELSEKHQAEDNKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421 + A+ +DE A LL+ EGF+ +EELA V + E+ +I+G D + E+Q RA+ + Sbjct: 364 IDALEIDEEFAQLLIDEGFSTLEELAYVPVRELTAIDGLEDGDLVEELQTRAKNAITAKA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 424 LAEEEALKKAQIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLTDIEE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W + Sbjct: 478 -----------LSAEQAADLIMAAR-NICWFTE 498 >gi|260914257|ref|ZP_05920730.1| N utilization substance A [Pasteurella dagmatis ATCC 43325] gi|260631890|gb|EEX50068.1| N utilization substance A [Pasteurella dagmatis ATCC 43325] Length = 494 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 199/509 (39%), Positives = 320/509 (62%), Gaps = 20/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEEVTNPTKEITLEAAQFEDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI++GTVK+V N+++DLG ++ V+ R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVMLREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV ++D Sbjct: 184 YKVSPENKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKTNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDSH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ + FM + Sbjct: 304 SMDIAVESANLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNQKHQAEDNKVLKLFMNTL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE AH+L+ EGF+ +EELA V ++E+ SI+G DE+ E+Q RA+ + + + Sbjct: 364 EIDEEFAHILIEEGFSTLEELAYVSVNELTSIDGLEDEDLVEELQTRAKNAITAAALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ I + L E I T+E+LA VDDL Sbjct: 424 EALKQAHIEDRLLALDGMNRHIALKLAEKNITTLEELAEQGVDDLADIE----------- 472 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q I+ AR + W + Sbjct: 473 ------DLTAEQAADFIMAAR-NICWFSE 494 >gi|254516618|ref|ZP_05128677.1| N utilization substance protein A [gamma proteobacterium NOR5-3] gi|219675041|gb|EED31408.1| N utilization substance protein A [gamma proteobacterium NOR5-3] Length = 497 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 208/511 (40%), Positives = 325/511 (63%), Gaps = 22/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRWL 63 Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+A Sbjct: 64 VVPDDEMALLGTQFTTEEAIEQDPSLKPGDVYQEQVENVGFGRIAAQTAKQVIVQKVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++ +VGE+I+GTVK+V NVIVDLGN+ +G++ R++ + RE R DRV++ Sbjct: 124 ERAQVVEQYESRVGELIAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV ++ Sbjct: 184 ILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE+ Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM Sbjct: 304 SNTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEAVEKQEAEAGQVIQTFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V I E+ SI+GFDE+ A E++ RA++ L + I Sbjct: 364 KLDVDEDVAGILVDEGFTTLEEVAYVPIDEMTSIDGFDEDIAEELRARAKDALLTLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ + +L + G+D + L GI TMEDLA VD+L+ Sbjct: 424 EEELGAQEPAADLLGMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIE---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR W E+E Sbjct: 474 -------DMTEERAGELIMTARAP--WFEEE 495 >gi|148827021|ref|YP_001291774.1| transcription elongation factor NusA [Haemophilus influenzae PittGG] gi|148718263|gb|ABQ99390.1| transcription elongation factor NusA [Haemophilus influenzae PittGG] Length = 495 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 197/510 (38%), Positives = 324/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ FM A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNTKHQAEDNKVLNLFMNAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITVAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|84387286|ref|ZP_00990307.1| transcription elongation factor NusA [Vibrio splendidus 12B01] gi|84377933|gb|EAP94795.1| transcription elongation factor NusA [Vibrio splendidus 12B01] Length = 495 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 319/512 (62%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RVEI+ +TG+ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSELEIEVRVEIDRKTGNFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E VEEVE T +IS++ A+ DP I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WEAVEEVEFPTKEISIEAAKYDDPEIELGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +F D GE+++G VK+V VI+DLGN+ + VI RD+ + REN RPGDRV+ Sbjct: 122 ERAQIVEQFIDNEGELVTGAVKKVNRDTVILDLGNNAEAVILRDDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ P+ + +LF +EVPEI ++++K +RD GSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFVTRSKPEMLAELFRVEVPEIGEELIELKGAARDAGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Q++ + FM+ Sbjct: 302 AHSMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLEKKHQEEAVASIENFMK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++E A +LV EGF+ +EE+A V ++E+ ++G DE E++ RA++ L + + Sbjct: 362 HLDIEEDFAQMLVEEGFSTLEEVAYVPVNELLEVDGLDEGIVEELRNRAKDALTTLALAK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + +E+L ++ G++ ++ L G+ T+EDLA VD+L G Sbjct: 422 EETFDGVEPAEDLLALEGLEREMAYKLAAKGVATLEDLADQGVDELEGIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W E+ Sbjct: 472 -------DLTAERAGELIMAAR-NICWFGDEE 495 >gi|73541717|ref|YP_296237.1| transcription elongation factor NusA [Ralstonia eutropha JMP134] gi|72119130|gb|AAZ61393.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Ralstonia eutropha JMP134] Length = 491 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 333/509 (65%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVAIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L ARD D S+++G V + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDEQGLQEPDKQILLFEARDDDASLELGDYVEQQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T+EE + + ++ + + FM Sbjct: 304 KHCMDVVVDEENLAVAIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESDAVRKLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSTLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G++ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLNPELIGKLAEGDIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +++I+ AR W Sbjct: 472 -------GVTEEEAKALIMKAREH--WFN 491 >gi|311104987|ref|YP_003977840.1| transcription elongation protein NusA [Achromobacter xylosoxidans A8] gi|310759676|gb|ADP15125.1| transcription elongation protein NusA [Achromobacter xylosoxidans A8] Length = 492 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 309/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ +TGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRDTGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPGIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGESIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRATFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGMTPELAAKLAERQVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492 >gi|293604237|ref|ZP_06686645.1| N utilization substance A [Achromobacter piechaudii ATCC 43553] gi|292817462|gb|EFF76535.1| N utilization substance A [Achromobacter piechaudii ATCC 43553] Length = 492 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 310/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAQEIVPDIQEGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ IV+ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIVETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 YVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRTTFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGMTQELAAKLAERQVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492 >gi|94310970|ref|YP_584180.1| transcription elongation factor NusA [Cupriavidus metallidurans CH34] gi|93354822|gb|ABF08911.1| transcription termination/antitermination L factor [Cupriavidus metallidurans CH34] Length = 491 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 205/509 (40%), Positives = 330/509 (64%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + ++ A + + DIRV I+ E+G+ FR Sbjct: 4 EVLLLVDALAREKNVDKDVVFGALEAALASATKKRFEEDVDIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ QI L AR+++ I + + + + ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 VVPDEQGLQEPDKQILLFEAREQNADIQLDDYIEEQIESVEFGRIGAQAAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ D+ +I++GTVKR + +IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLDRGEKIMTGTVKRADKKGLIVESGRVEALLARDQIIPKENLRTGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V R RGPQ+ LSRT P+F++KLF EVPE+ G++++KA +RDPG RAK+AV + Sbjct: 184 YILNVDRAARGPQIELSRTAPEFLIKLFENEVPEMEQGLLEIKAAARDPGVRAKIAVVAH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGVRGTRVTAVRNEIGGEAVDIVLWSEDPAQFVIGALAPAQVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM Sbjct: 304 KHSMDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ Sbjct: 364 KLDVDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E VS++L S+ G+ ++ L E I T +DLA +VD+L+ + Sbjct: 424 EEKVEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELVELA---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +++I+ AR W Sbjct: 472 -------GVGEEEAKALIMKAREH--WFN 491 >gi|261867879|ref|YP_003255801.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413211|gb|ACX82582.1| transcription elongation factor NusA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 498 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 198/513 (38%), Positives = 315/513 (61%), Gaps = 24/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEYDVDVRVAINPKTGEFDTFRRWV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +I+L+ AR DP +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEEVNNPTKEITLEAARFEDPDAQVGDYVEDQIESIAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRV 182 + +F+ K G+II+ TVK+ +VI+D+ ++ V+ R++ + REN RPGDRV Sbjct: 124 SKIVDQFRSKEGQIITATVKKSNRDSVILDVNGEDGNKAEAVMLREDMLPRENFRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +Y V E +G Q+ ++R P+ +++LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 184 RGVLYKVSPESKGTQLFVTRAKPEMLIELFRLEVPEIGEELIEIRSAARDPGSRAKIAVK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+D Sbjct: 244 SNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V + L+ AIGR GQNVRLA+QLTGW ++++T +E + Q + ++ F Sbjct: 304 EDKHAMDIAVEEVNLAQAIGRNGQNVRLATQLTGWVLNVMTTQELNAKHQAEDDKVLNLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGID 421 + + +DE A LL+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + Sbjct: 364 IDTLEIDEEFAQLLIDEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQTRAKNAITAQV 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 424 LAEEEALKQAKIEDRLLNLEGMNRHIAFKLSEKQITTLEELAEQGVDDLADIEE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q +I+ AR + W + Sbjct: 478 -----------LGAEQAADLIMAAR-NICWFTE 498 >gi|149909281|ref|ZP_01897937.1| N utilization substance protein A [Moritella sp. PE36] gi|149807598|gb|EDM67546.1| N utilization substance protein A [Moritella sp. PE36] Length = 499 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 200/516 (38%), Positives = 314/516 (60%), Gaps = 23/516 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK++ R+ + M ++ A + Y ++RVEI+ +TG+ FR Sbjct: 2 NKEILLVVDAVSNEKALPREKIFEAMEIALATATKKRYEGDIEVRVEIDRKTGNFETFRR 61 Query: 66 LEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V+++ +EN +I+L A+ D +I++GG + D + + F RV Q+AKQVIIQK Sbjct: 62 WLVIDDKGEPLENPFSEITLDAAKYDDETIEVGGYIEDTIDSVVFDRVTTQTAKQVIIQK 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGD 180 VREAERD + GE+I+G VKR V++DLGN+ + V+ RDE + RE+ R GD Sbjct: 122 VREAERDLIVQHYAKHEGELITGLVKRANRETVVLDLGNNAEAVMFRDEMLPRESFRTGD 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K + +V+ E RG Q+ +SR + +++LF +EVPE ++++KA +RDPGSRAK+A Sbjct: 182 RIKGLLKEVKPEARGTQLFISRACNEMLIELFRIEVPEFNEEMLELKAAARDPGSRAKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDPVGACVGMRG+RVQAV EL E++DI++W + A FVINA+ PA V ++ Sbjct: 242 VKSNDKRIDPVGACVGMRGARVQAVSNELNGERVDIILWDDNPAQFVINAMAPAEVASII 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V +E L+ AIGR GQNVRLASQLTGW ++++T E + QK+ + Sbjct: 302 VDEDQHSMDIAVEQENLAQAIGRNGQNVRLASQLTGWELNVMTVAEANEKHQKENDRLMN 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +++DE +A LL+ EGF+ +EE+A V ++E I+GFDE+ E++GRA+ L Sbjct: 362 IFTDKLDIDEDMAELLIEEGFSSLEEIAYVPVNEFLQIDGFDEDLVDELRGRAKNALTTS 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ + S +L ++ G++ + L G+ T+E+LA S+DDL E Sbjct: 422 ALAAEESLESAEPSADLLALEGLEKHLAYVLASIGVITLEELAEQSIDDLSEIEE----- 476 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ +I+ AR + W + Sbjct: 477 ------------LTDERAGELIMAAR-NICWFSDSE 499 >gi|317402909|gb|EFV83450.1| N utilization substance protein A [Achromobacter xylosoxidans C54] Length = 492 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 204/511 (39%), Positives = 311/511 (60%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ RDVV + ++ A + + +DIRV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVTRDVVFGALESALASAMKKRFKDDADIRVAIDRETGDHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A + P+I +G + +PL P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQEMLSDAVEIVPNIQVGEYIEEPLEPIEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ I+SGT+KR++ G+ I++ G + + R E I +ENLR DRV++ Sbjct: 124 AEREQVLNDFLDRGETIVSGTIKRMDKGDAIIETGKIEARLPRSEMIPKENLRVADRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RD G RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDAGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQEVERSGLRATFMN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + G+ ++ L E + T +DLA + D+L + Sbjct: 424 EER---LETAQDLLELEGVTPELAAKLAERQVHTRDDLAELATDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + + +I+ AR W ++E Sbjct: 471 -------GLTEQEASDLIMRARAH--WFDEE 492 >gi|284006667|emb|CBA71929.1| transcription elongation protein (N utilization substance protein A) [Arsenophonus nasoniae] Length = 504 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 214/519 (41%), Positives = 318/519 (61%), Gaps = 25/519 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVNIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L A+ D I +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLDAAKFEDSEIKLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVEQFREQQGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSR K+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRTKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLASQL W ++++T EE Q + + Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLASQLLKKHRGDDRWELNVMTAEELEAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F++ +++DE A LV EGF+ +EELA V I+E+ IEG DE T ++ RA+ L Sbjct: 362 SINSFVKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIEGLDETTIEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +E+L ++PG++ + + L +GI T+EDLA +DDL E Sbjct: 422 TTLELAQKESMGDNQRTEDLLNLPGMNHALAMNLAAHGICTLEDLAEQGIDDLRDIEE-- 479 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W + Sbjct: 480 --------------GLNDEQAGEIIMAAR-NICWFGNDP 503 >gi|148361087|ref|YP_001252294.1| N utilization substance protein A [Legionella pneumophila str. Corby] gi|148282860|gb|ABQ56948.1| N utilization substance protein A [Legionella pneumophila str. Corby] Length = 492 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 328/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+P+TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDPKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491 >gi|33596482|ref|NP_884125.1| transcription elongation factor NusA [Bordetella parapertussis 12822] gi|33566251|emb|CAE37162.1| N utilization substance protein A [Bordetella parapertussis] Length = 492 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 206/511 (40%), Positives = 313/511 (61%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG Q++LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQLILSRTSPEFIRQLFENEVPEIEQGLLEIKATARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + GI ++ L E + T +DLA S D+L + Sbjct: 424 EER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W ++E Sbjct: 471 -------GLQEEEASDLIMRARAH--WFDEE 492 >gi|33592374|ref|NP_880018.1| transcription elongation factor NusA [Bordetella pertussis Tohama I] gi|33602223|ref|NP_889783.1| transcription elongation factor NusA [Bordetella bronchiseptica RB50] gi|33572019|emb|CAE41542.1| N utilization substance protein A [Bordetella pertussis Tohama I] gi|33576661|emb|CAE33739.1| N utilization substance protein A [Bordetella bronchiseptica RB50] gi|332381790|gb|AEE66637.1| transcription elongation factor NusA [Bordetella pertussis CS] Length = 492 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 313/511 (61%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + ++ A + + +DIRV I+ ETG FR Sbjct: 4 EILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L AR+ P I++G + + L P++FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F D+ IISG++KR++ G+VI++ G + + R E I +ENLR GDRV++ Sbjct: 124 AEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEARLPRSEMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 FVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L AIG +GQNVRLAS+LTGW I+I+T EE ++ + FM Sbjct: 304 KHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAFDEDTINELRARARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ L +++L + GI ++ L E + T +DLA S D+L + Sbjct: 424 EER---LETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIA---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +++ +I+ AR W ++E Sbjct: 471 -------GLQEEEASDLIMRARAH--WFDEE 492 >gi|241764251|ref|ZP_04762282.1| NusA antitermination factor [Acidovorax delafieldii 2AN] gi|241366374|gb|EER60896.1| NusA antitermination factor [Acidovorax delafieldii 2AN] Length = 494 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 201/514 (39%), Positives = 327/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSVDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R P +++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVPDVEVGEYIEEAIESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRSGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDTARKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L++EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILISEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + E VS++L + G+ ++ L ENG+ T +DLA ++D+L + Sbjct: 422 AREESVGE--VSQDLRDLEGLTPELIAKLAENGVHTRDDLADLAIDELTDLTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + +++I+ AR W ++ Sbjct: 474 -----------SAEDAKALIMKAREH--WFAGQE 494 >gi|213852790|ref|ZP_03382322.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 485 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 194/483 (40%), Positives = 305/483 (63%), Gaps = 6/483 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 242 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 302 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 362 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 421 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 422 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTAK 481 Query: 480 NIE 482 Sbjct: 482 KPV 484 >gi|261820127|ref|YP_003258233.1| transcription elongation factor NusA [Pectobacterium wasabiae WPP163] gi|261604140|gb|ACX86626.1| NusA antitermination factor [Pectobacterium wasabiae WPP163] Length = 509 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 209/526 (39%), Positives = 316/526 (60%), Gaps = 32/526 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+++ GEII+G VK+V N+ +++ ++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEG DEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509 >gi|227357076|ref|ZP_03841446.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis ATCC 29906] gi|227162768|gb|EEI47731.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis ATCC 29906] Length = 502 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 322/518 (62%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++++GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A +LV EGF+ +EEL V I E+ +I+G DEET ++ RA+ L Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDGLDEETVEALRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDID--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNSERAGELIMAAR-NICWFGND 501 >gi|50119658|ref|YP_048825.1| transcription elongation factor NusA [Pectobacterium atrosepticum SCRI1043] gi|49610184|emb|CAG73626.1| N utilization substance protein A [Pectobacterium atrosepticum SCRI1043] Length = 509 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 209/526 (39%), Positives = 317/526 (60%), Gaps = 32/526 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV T +I+L A+ DPS+D+GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDETISRENLRP 178 ER +F+ + GEII+G VK+V N+ +++ +++ VI R++ + REN RP Sbjct: 122 ERAMVVDQFRQQEGEIITGVVKKVNRDNISLEVRPIDGSNTSAEAVIGREDMLPRENFRP 181 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR++ +Y VR E RG Q+ +SR+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK Sbjct: 182 GDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGACVGMRG+RVQAV +EL E+ID+++W + A FVINA+ PA V Sbjct: 242 IAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDVILWDDNPAQFVINAMAPADVVS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG-------WTIDIITEEEDSINR 351 +V+DED +++ V L+ AIGR GQNVRLASQL W ++++T E+ Sbjct: 302 IVVDEDTYTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSEDRWELNVMTVEDLQAKH 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + F + +++DE A +LV EGF+ +EELA V I E+ +IEGFDEET ++ Sbjct: 362 QAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGFDEETVEALRE 421 Query: 412 RAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 RA+ L + + ++ + + +E+L S+PG+ ++ L G+ T+EDLA VDDL Sbjct: 422 RAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDLT 481 Query: 472 GWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 E +Q +I+ AR + W + Sbjct: 482 DIEE-----------------LNDEQAGELIMAAR-NICWFGDDNE 509 >gi|332306994|ref|YP_004434845.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174323|gb|AEE23577.1| NusA antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 497 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 204/514 (39%), Positives = 318/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVSIDRVTGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN +++L A+ +P I +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WMVIADDQKQENPFAEMTLSAAQIDEPDIQLGEYVEDQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + E++++VG++I+GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR Sbjct: 122 REAERAQVMAEYEERVGDLITGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFISRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + +++ ++ Sbjct: 302 DEDNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNSKHEEENSKVLAV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L Sbjct: 362 FVNGLDIDEDFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVEDLRSRARAALTTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + EEL S+ G++ + L GI +E LA VD++ E Sbjct: 422 LANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 476 -----------LDEEKAGQLIMAAR-NIVWFNEE 497 >gi|332283701|ref|YP_004415612.1| transcription elongation protein [Pusillimonas sp. T7-7] gi|330427654|gb|AEC18988.1| transcription elongation protein [Pusillimonas sp. T7-7] Length = 494 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 318/511 (62%), Gaps = 24/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ R+VV + +++ A + + +DIRV I+ +G+ FR Sbjct: 4 EILLLVDALAREKNVGREVVFGALENALASAMKKRFKEDADIRVTIDRMSGEHEGFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ Q L A++ P I++G + + L P +FGR+ Q+AKQ I+QK+R+ Sbjct: 64 VVPDDAGLQEPDQQELLSDAQEIVPGIEVGEYIEEQLEPEEFGRIGAQAAKQAILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ IISGTVKR++ G+ I++ G + + R ETI +EN+R GDR+++ Sbjct: 124 AEREQVLNDFLERGENIISGTVKRMDKGDAIIETGKIEARLPRSETIPKENIRIGDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RG QV+LSRT P F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 WVLKVDHTARGQQVILSRTAPDFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E++DIV+W+ D A FVI AL PA V +V+DED Sbjct: 244 DKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWAEDPAEFVIGALAPAHVDSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E L AIG RGQNVRLAS+LTGW I+I+T EE ++++ Q F+ Sbjct: 304 KHAMDVVVDAENLPKAIGARGQNVRLASELTGWQINIMTPEESQNRQEEERTGLRQAFIT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V + E+ IE FDE+T E++ RAR L I Sbjct: 364 KLDVDEEVADILIDEGFTGLEEIAYVPLQELLEIEAFDEDTINELRTRARNALLTEAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++++ V+++L + G++ ++ L EN + T++DLA + D+L S Sbjct: 424 EERVQ--TVAQDLLEVEGMNPELVAKLAENEVLTLDDLAELATDELAEIS---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +D+ MI+ AR W ++E Sbjct: 472 -------GMSEDEASQMIMRARAH--WFDEE 493 >gi|197335920|ref|YP_002155240.1| transcription termination factor NusA [Vibrio fischeri MJ11] gi|197317410|gb|ACH66857.1| transcription termination factor NusA [Vibrio fischeri MJ11] Length = 495 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 198/512 (38%), Positives = 314/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE VEN T +IS++ A+ D +I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVENVENPTLEISIEAAQFEDETIEVGGYIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F D GE+I+G VK+V +IVDLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + + Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ L G+ T+EDLA VD+L Sbjct: 422 EESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 472 -------NLTEERAGELIMAAR-NICWFSDEE 495 >gi|113460963|ref|YP_719030.1| transcription elongation factor NusA [Haemophilus somnus 129PT] gi|112823006|gb|ABI25095.1| transcription elongation protein, N utilization substance protein A [Haemophilus somnus 129PT] Length = 493 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+D Sbjct: 184 YKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM A+ Sbjct: 304 SMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMTAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE AH+LV EGF ++EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 EIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V E+L ++ G+ I L E I T+E+LA VDDL E Sbjct: 424 EALKQAHVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 474 -------LSAEQAADLIMAAR-NICWFN 493 >gi|59711092|ref|YP_203868.1| transcription elongation factor NusA [Vibrio fischeri ES114] gi|59479193|gb|AAW84980.1| transcription termination/antitermination L factor NusA [Vibrio fischeri ES114] Length = 495 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 200/512 (39%), Positives = 314/512 (61%), Gaps = 19/512 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE VEN T +IS++ A+ D +I+IGG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F D GE+I+G VK+V +IVDLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++K +RDPGSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D A LLV EGF +EE+A V ++E+ IE DE+T ++ RA+E L + + Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ L G+ T+EDLA VD+L Sbjct: 422 EESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR + W E+ Sbjct: 472 -------NLTEERAGELIMAAR-NICWFSDEE 495 >gi|170717519|ref|YP_001784611.1| transcription elongation factor NusA [Haemophilus somnus 2336] gi|168825648|gb|ACA31019.1| NusA antitermination factor [Haemophilus somnus 2336] Length = 493 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y D+RV IN +TG+ S FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYEQEIDVRVVINTKTGEFSTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N T +I+L+ A+ DP I +G + D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVETVLNPTKEITLEAAQFEDPEIKLGDYIEDEIDSIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI+SGTVK+V ++I+DL ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVSGTVKKVNRDSIILDLSQQAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +V+LF +EVPEI ++++K SRDPG RAK+AV S+D Sbjct: 184 YKVSPENKGIQLFVTRAKPEMLVELFRIEVPEIGEELIEIKGASRDPGLRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRGSRVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGSRVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V E L+ AIGR GQNVRLA+QLTGW ++++T ++ + Q + N+ FM A+ Sbjct: 304 SMDIAVEPENLAQAIGRNGQNVRLATQLTGWVLNVMTIDDLNAKHQAEDNKILALFMTAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE AH+LV EGF ++EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 EIDEEFAHILVDEGFTNLEEIAYVAVNELTAIDGLEDEDLVEELQARAKNAITARMLAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V E+L ++ G+ I L E I T+E+LA VDDL E Sbjct: 424 EALKQAQVEEKLLNLEGMSRHIAFRLSEKQITTLEELAEQGVDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 474 -------LSAEQAADLIMAAR-NICWFN 493 >gi|212709946|ref|ZP_03318074.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM 30120] gi|212687458|gb|EEB46986.1| hypothetical protein PROVALCAL_00996 [Providencia alcalifaciens DSM 30120] Length = 502 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 321/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVIVEEVTMPTREITLEAAQFEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 SIETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATHGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNNEKAGELIMAAR-NICWFGND 501 >gi|197287229|ref|YP_002153101.1| transcription elongation factor NusA [Proteus mirabilis HI4320] gi|194684716|emb|CAR46696.1| transcription elongation protein (N utilization substance protein A) [Proteus mirabilis HI4320] Length = 502 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 321/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L+ A+ +P I++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTQPTREITLEAAKYEEPEIELGGFIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++++GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRDNITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A +LV EGF+ +EEL V I E+ +I+ DEET ++ RA+ L Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPIDELLAIDSLDEETVEALRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGMERSLAFDLAARGICTLEDLAEQGIDDLTDID--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNSERAGELIMAAR-NICWFGND 501 >gi|297180708|gb|ADI16917.1| transcription elongation factor [uncultured gamma proteobacterium HF0010_16J05] Length = 512 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 203/527 (38%), Positives = 322/527 (61%), Gaps = 28/527 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V++EK + +DV+ + ++ A + YG ++ RV I+ E+G+ FR Sbjct: 4 EILLVVESVSHEKGVSKDVLFGAIESALAVATKKKYGENAEFRVAIDRESGEYETFRTWA 63 Query: 68 VVE---------EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 VV+ N Q S+ A+ P +G V+ + + + FGR+A Q+AKQVI Sbjct: 64 VVDFGEIEAEEEAEVNPEAQYSVDQAQSFKPGAVLGDVIEEQVESVAFGRIAAQTAKQVI 123 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177 +QKVREAER + + +V E++SGTVK++ +VIVDLGN+ +G++ R+ I RE R Sbjct: 124 VQKVREAERAQVVEAYTSRVNELVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREIFR 183 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+++ + ++R + RGPQ++LSRT +V+LF +EVPEI ++Q+ +RDPGSRA Sbjct: 184 VGDRLRAMLVEIRPDNRGPQLILSRTARSMLVELFKVEVPEISEDVIQILGAARDPGSRA 243 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA V Sbjct: 244 KIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAEVA 303 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDE+ +++ V +E L+ AIGR GQNVRLAS L GW+++I+TEEE + + + ++ Sbjct: 304 SIVLDEETHAMDIAVTEENLAQAIGRGGQNVRLASDLCGWSLNIMTEEEAAEKLEAESSK 363 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 FM+A++VDE +A +LV EGF +EE+A V + E+ +IEGFDEE E++ RA++ L Sbjct: 364 FISEFMEALSVDEDVAAVLVEEGFTTLEEIAYVPVEEVMAIEGFDEEIVNELRNRAKDAL 423 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++ + + +++L + G++ ++ L + + TMEDLA +V +LL Sbjct: 424 LTRAIASEEALGDNKPADDLLEMEGMERELAFKLAAHEVITMEDLAELAVPELLEIDPE- 482 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQD 524 +D+ ++I+ AR W +E + + Sbjct: 483 ---------------LSEDKAAALILKAREP--WFAEEAQDAQATVE 512 >gi|268592826|ref|ZP_06127047.1| L factor [Providencia rettgeri DSM 1131] gi|291311611|gb|EFE52064.1| L factor [Providencia rettgeri DSM 1131] Length = 502 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 321/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ A+ DP++ +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTREITLEAAQYEDPALQLGEYVEDQIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A LV EGF+ +EELA V I+E+ I+G DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEEFATALVEEGFSTLEELAYVPINELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLEGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W + Sbjct: 479 --------------GLDDEKAGTLIMAAR-NICWFGND 501 >gi|300721537|ref|YP_003710812.1| transcription pausing L factor [Xenorhabdus nematophila ATCC 19061] gi|297628029|emb|CBJ88578.1| transcription pausing; L factor [Xenorhabdus nematophila ATCC 19061] Length = 502 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 320/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV T +I+L A+ DP I++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVEEVTLPTREITLDAAKFEDPEIELGSYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 302 NCTMDVAVENSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V I+E+ ++EG DEE+ ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEDFATVLVEEGFSTLEELAYVPINELLAVEGLDEESVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +E+L ++PG++ + L +GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLSDQQPAEDLLNLPGMERTLAFNLAAHGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNDEKAGELIMAAR-NICWFGDD 501 >gi|109898014|ref|YP_661269.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c] gi|109700295|gb|ABG40215.1| NusA antitermination factor [Pseudoalteromonas atlantica T6c] Length = 497 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 202/514 (39%), Positives = 317/514 (61%), Gaps = 22/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + R+ + + +I A + ++RV I+ TGD FR Sbjct: 2 NKEILLVAEAVSNEKQVPREKIFEALEFAIASATKKKTEGEIEVRVAIDRITGDFDTFRR 61 Query: 66 LEVVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+ + EN ++++ A+ +P I +G V D + + F R+ Q+AKQVI+QKV Sbjct: 62 WMVIADDQKQENPFAEMTISAAQIDEPDIQLGDYVEDQIESIKFDRITTQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + E++++VG++++GTVK+V N+I+DLGN+ +GVI RD+ + RE RPGDR Sbjct: 122 REAERAQVMAEYEERVGDLVTGTVKKVNRDNIIIDLGNNAEGVIYRDDMLPRETFRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++KA +RDPGSRAK+AV Sbjct: 182 VRGLLYVIRPEARGAQLFVSRTHPDMLVELFRLEVPEIAEETLEIKAAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D +DPVGACVGMRGSRVQAV +EL E++DIV+W + A FVINA+ PA V +V+ Sbjct: 242 KTNDKRLDPVGACVGMRGSRVQAVSSELSGERVDIVLWDDNPAQFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V + L+ AIGR GQNVRLA+QLTGW ++++T E+ + ++ ++ Sbjct: 302 DEDNHTMDVAVESDNLAQAIGRSGQNVRLAAQLTGWELNVMTVEDLNNKHDEENSKVLAV 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F+ +++DE A +LV EGF+ +EE+A V I+E+ I+G DE+ +++ RAR L Sbjct: 362 FVNGLDIDEEFAAVLVDEGFSTLEEIAYVPINELLEIDGLDEDIVDDLRSRARAALTTQA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + EEL S+ G++ + L GI +E LA VD++ E Sbjct: 422 LANEETLEASEPKEELLSLAGMERHVAYTLASRGITDLEALAEQGVDEISDIEE------ 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W +E Sbjct: 476 -----------LDEEKAGQLIMAAR-NIVWFNEE 497 >gi|296135767|ref|YP_003643009.1| transcription termination factor NusA [Thiomonas intermedia K12] gi|294339930|emb|CAZ88293.1| transcription pausing; L factor [Thiomonas sp. 3As] gi|295795889|gb|ADG30679.1| transcription termination factor NusA [Thiomonas intermedia K12] Length = 492 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 204/509 (40%), Positives = 323/509 (63%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++DRDVV + ++ A + LY +D+RV+I+ TG+ FR Sbjct: 4 EILMLVDALAREKNVDRDVVFGAVEAALASATKRLYEGEADVRVQIDRNTGEYESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I++G + +P+ + FGR+ Q+AKQVI+QK+R+ Sbjct: 64 VVPDEAGLQLPDSEILLFEAREQIPDIEVGDYIEEPIESIAFGRIGAQAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F + +I +G+VKR++ G++I++ G D +RR + I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLARNDKIFNGSVKRLDKGDLIIESGKVDARLRRSDLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I + R RGPQ+ +SRT P+FM++LF +EVPEI G++++K+ +R+PG RAK+AV S Sbjct: 184 VITKIDRTARGPQIEISRTAPEFMIELFRLEVPEIEQGLMEIKSCAREPGVRAKIAVVSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DRRVDPIGTCVGIRGSRVTAVTNELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E L+LAIGR GQNVRLAS+LTGW I+I++ EE ++ + F++ Sbjct: 304 KHAMDVAVDEENLALAIGRTGQNVRLASELTGWKINILSAEESDARNTQETQKMRSLFVE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +L+AEGF +EELA V I+E+ IE FDE+T E++ RAR L +I Sbjct: 364 KLDVDQEVADILIAEGFTSLEELAYVPINEMLEIEAFDEDTVNELRERARNALLTQEIAR 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ E+ + L ++ G+ + L E G+ T++DL + D+L G Sbjct: 424 EQKLDEVDPA--LKALDGLSADELALLAEAGVLTLDDLGDLATDELTGILRT-------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + + +I+ AR W + Sbjct: 474 ---------DEARAADLILKARAH--WFD 491 >gi|88705684|ref|ZP_01103394.1| Transcription elongation protein nusA [Congregibacter litoralis KT71] gi|88700197|gb|EAQ97306.1| Transcription elongation protein nusA [Congregibacter litoralis KT71] Length = 497 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 326/511 (63%), Gaps = 22/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + D++ + ++ A + Y +DI V I+ ETGD R Sbjct: 4 EILLVAEAVSNEKGVSEDIIFEAIESALAMATKKRYDEDADIEVTIDRETGDYETVRRWL 63 Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E Q + + A ++DPS+ G V + + + FGR+A Q+AKQVI+QKVR+A Sbjct: 64 VVPDDELALLGTQFTTEEAIEQDPSLKPGDVHEEKVENVGFGRIAAQTAKQVIVQKVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++ +VGE+++GTVK+V NVIVDLGN+ +G++ R++ + RE R DRV++ Sbjct: 124 ERAQVVELYESRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPREQLVGRETFRINDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q+++ +RDPGSRAK+AV ++ Sbjct: 184 ILKEISTETRGPQLILSRACPEMLIELFKIEVPEISEEVIQIRSAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DE+ Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMSPAEVESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V ++ L+ AIGR GQNVRLAS+LTGWTI++++ +E ++ + + Q FM Sbjct: 304 NVTMDVAVAEDNLAQAIGRAGQNVRLASELTGWTINVMSVDEALEKQEAEAGQVIQTFMD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ A E++ RA++ L + I Sbjct: 364 KLDVDEDVAGILVDEGFTTLEEVAYVPLEEMTSIDGFDEDIAEELRARAKDALLTLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L ++ G+D + L GI TMEDLA VD+L+ Sbjct: 424 EEELGAQEPAEDLLTMDGMDRHLAFILSSRGIVTMEDLAEQGVDELMDIE---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR W E+E Sbjct: 474 -------DMTEERAGELIMTARAP--WFEEE 495 >gi|183600365|ref|ZP_02961858.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827] gi|188020156|gb|EDU58196.1| hypothetical protein PROSTU_03930 [Providencia stuartii ATCC 25827] Length = 502 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 207/518 (39%), Positives = 320/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+V T +I+L+ A+ +P + +G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEDVTMPTREITLEAAQFENPELKLGEYVEDQIESVAFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDEEFATALVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D+ + L GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDNTLAYNLAIRGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W + Sbjct: 479 --------------GLDGEKAGALIMAAR-NICWFGND 501 >gi|290473446|ref|YP_003466313.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004] gi|289172746|emb|CBJ79517.1| transcription pausing; L factor [Xenorhabdus bovienii SS-2004] Length = 502 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 207/518 (39%), Positives = 319/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVCIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEV T +I+L+ A+ DP +++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVEEVTLPTREITLEAAKYEDPEMELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEI++ VK+V N+ +DLGN+ + VI R++ + REN RPGDRV+ Sbjct: 122 ERAMVVDQFREQQGEIVTAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFITRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE Q + + Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTAEELQAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++D A +LV EGF+ +EELA V I+E+ +IEG DEET ++ RA+ L Sbjct: 362 SIDTFTKHLDIDVDFATVLVEEGFSTLEELAYVPINELLAIEGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 +++ ++ + + +E+L ++ G+D + L +GI T+EDLA +DDL Sbjct: 422 TTLELAQKESLGDQQPAEDLLNLSGMDRTLAFNLAAHGICTLEDLAEQGIDDLSDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLSDEKAGELIMAAR-NICWFGDD 501 >gi|292492785|ref|YP_003528224.1| transcription termination factor NusA [Nitrosococcus halophilus Nc4] gi|291581380|gb|ADE15837.1| transcription termination factor NusA [Nitrosococcus halophilus Nc4] Length = 506 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 223/524 (42%), Positives = 328/524 (62%), Gaps = 23/524 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK + ++V+ + ++ A R Y +RV I+ TGD FR Sbjct: 2 NKEILMVVDAVSNEKGVGKEVIFQAIEAALAMATRKRYQEDIAVRVAIDRATGDYQSFRT 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVVE+ +E QI L A RDP+I++GG + +P+ + FGR+A Q+AKQVI+QKV Sbjct: 62 WEVVEDEAELEAPQRQICLGEALKRDPNIEVGGFIEEPMESIAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + +KD+VGE++ G VKR + GNVI+DLG++ +G+I ++E I RE +RPGDR Sbjct: 122 REAERAKVVAAYKDRVGEMVMGVVKRTDRGNVILDLGDNAEGIIPQEEMIPREAIRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +VR E RGPQ++LSRT P+ +++LF +EVPEI +++K +RDPG RAK+AV Sbjct: 182 LRGYLKEVRTEGRGPQLVLSRTAPELLIELFKLEVPEINENRIEIKGAARDPGLRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+ Sbjct: 242 KTNEARIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPAHFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TEEE + + Q Sbjct: 302 DEESHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEEEAGEKGEAEAKALQQM 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF+ +EE+A V EI ++E FD + E++ RAR+ L Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEVAYVPEQEILAVEEFDSQIVQELRNRARDVLLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ I + +EL + ID ++ L GI T +DLA SVDDL+ Sbjct: 422 IANEETIETMQPDQELLDMEEIDYELAGILASKGIVTKDDLAEQSVDDLMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G K++ +I+ AR W E+ + + Sbjct: 475 ----------GMDKEKAARLIMAARES--WFASEQEGEGTEERQ 506 >gi|121604913|ref|YP_982242.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2] gi|120593882|gb|ABM37321.1| NusA antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 506 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 200/511 (39%), Positives = 317/511 (62%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + DA++ EK+++RDVV + ++ A + +Y DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVDAISREKNVERDVVFGAVELALASATKKVYADGVDIRVAVDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + + ARD P I+ G + P+ + GR+ Q+AKQVI+QK+ Sbjct: 62 WLVVADEAGLQNPEAEELVTDARDEIPDIEEGDYIEKPVESLPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR + I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRMDKGDLIVESGRVEGRLRRSDMIPKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSRT P++M++LF EVPEI G++++K +RDPGSRAK+AV Sbjct: 182 RAMIMEVDTTLRGAPIILSRTSPEYMIELFRQEVPEIEQGLLEIKTCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDANESAQKQATETDSSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M ++VD+ IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MAKLDVDQEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + GVS+ L + G+ ++ L E G+ T +DLA +VD+L + Sbjct: 422 AQEENVG--GVSQNLRDVEGLTPELIAKLTEAGVATRDDLADLAVDELTDITGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +++I+ AR W Sbjct: 474 -----------SADEAKALIMTARAH--WFT 491 >gi|119898399|ref|YP_933612.1| transcription elongation factor NusA [Azoarcus sp. BH72] gi|119670812|emb|CAL94725.1| putative N utilization substance protein A [Azoarcus sp. BH72] Length = 491 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 212/509 (41%), Positives = 336/509 (66%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ ETGD FR Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRIHDEADVRVSIDRETGDYESFRRWI 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ D I +G + +PL P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VMPDEEVTNDEAEMGIIDARELDSKIQLGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++ Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRLEAVLPRDQQIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLKIDRGARGPQLILSRTAPEFLMKLFELEVPEIEDGLLEIKACARDPGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VW+ D A FVI AL+PA V +V+DE+ Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIGGEQIDIIVWAADPAQFVIAALQPAEVVSIVVDEEA 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + +++ + FM+ Sbjct: 304 HAMDVVVDESNLAIAIGRNGQNVKLASELTGWTINLMSEQESAEKSEQEKSGIRSLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF+ +EE+A V ++E+ IE FDEET E++ RAR L I + Sbjct: 364 LDVDEEVADILIDEGFSSLEEIAYVPLAEMLEIEAFDEETVTELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ VS++L + G+D + L GI+T +DLA +VD+L+ + Sbjct: 424 EQLE--NVSDDLLGLDGMDKSLAAKLAGKGIRTRDDLADLAVDELVEMA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +Q +++I AR W E+ Sbjct: 471 ------GLDVEQAKALISVARAH--WFEE 491 >gi|68250159|ref|YP_249271.1| transcription elongation factor NusA [Haemophilus influenzae 86-028NP] gi|145629346|ref|ZP_01785145.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|145638849|ref|ZP_01794457.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|68058358|gb|AAX88611.1| transcription elongation protein NusA [Haemophilus influenzae 86-028NP] gi|144978849|gb|EDJ88572.1| transcription elongation factor NusA [Haemophilus influenzae 22.1-21] gi|145271821|gb|EDK11730.1| transcription elongation factor NusA [Haemophilus influenzae PittII] gi|309750830|gb|ADO80814.1| Transcription elongation factor NusA [Haemophilus influenzae R2866] Length = 495 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 196/510 (38%), Positives = 324/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|146283631|ref|YP_001173784.1| transcription elongation factor NusA [Pseudomonas stutzeri A1501] gi|145571836|gb|ABP80942.1| N utilization substance protein A [Pseudomonas stutzeri A1501] gi|327482026|gb|AEA85336.1| transcription elongation factor NusA [Pseudomonas stutzeri DSM 4166] Length = 493 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 211/509 (41%), Positives = 325/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + Y D+RVEIN G FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDDVDLRVEINRHNGSYETFRRWT 63 Query: 68 VVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++ E+ Q++L A++R+P +G V + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDDEHFEDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++D+VGEIISGTVK+V +VIVDLGN+ + ++ R++ I+RE R G RV++ Sbjct: 124 ERAQVVEAYRDRVGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGARVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV E+ E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQFVINAMAPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q++ + + F++ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ IEGFDE+ E++ RA++ L I Sbjct: 364 ELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L ++ G+D ++ V L G+ T EDLA S Sbjct: 424 EEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|261345162|ref|ZP_05972806.1| L factor protein [Providencia rustigianii DSM 4541] gi|282566853|gb|EFB72388.1| L factor protein [Providencia rustigianii DSM 4541] Length = 502 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 207/518 (39%), Positives = 319/518 (61%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L A+ DP + +GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVDEVTMPTREITLDAAQFEDPELQLGGYVEDQIESVVFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+++ GEII+ VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQQGEIITAQVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +++LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRPEARGAQLFVTRSRPEMLIELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T EE + Q + + Sbjct: 302 NCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKIHRGDDKWELNVMTAEELNAKHQAEAHA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A LV EGF+ +EELA V I E+ I+G DEET ++ RA+ L Sbjct: 362 SIETFTKHLDIDEEFATTLVEEGFSTLEELAYVPIKELLEIDGLDEETVEVLRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G+D + L GI T+EDLA +DDL+ Sbjct: 422 TTIELAQKESLGDNQPAEDLLNLDGMDRTLAYNLATRGICTLEDLAEQGIDDLIDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNNEKAGELIMAAR-NICWFGND 501 >gi|56478754|ref|YP_160343.1| transcription elongation factor NusA [Aromatoleum aromaticum EbN1] gi|56314797|emb|CAI09442.1| N utilization substance protein A [Aromatoleum aromaticum EbN1] Length = 491 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 334/509 (65%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V + ++ A + +D+RV I+ +TGD FR Sbjct: 4 EILLLVDALAREKNVAKDIVFGALESALASATKKRINDEADVRVTIDRDTGDYESFRRWV 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ P I++G + +PL P+DFGR+ Q+AKQVI+Q++R+A Sbjct: 64 VMPDEEVVNDEAEMGIIDAREMVPGIELGEYIEEPLEPIDFGRIGAQAAKQVILQRIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ ++SG++KR+E GN I+++G + VI RD+ I RENLR GDRVK++ Sbjct: 124 EREQILNDFLERKEHLVSGSIKRMERGNAIIEIGRLEAVIPRDQMIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F+ KLF +EVPEI +G++++KA +RDPG RAK+AV S+D Sbjct: 184 LLRIDRGARGPQLILSRTAPEFVGKLFELEVPEIEDGLLEIKACARDPGLRAKIAVQSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FVI AL+PA V +V+DE+ Sbjct: 244 PRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSADPAQFVIAALQPAEVVSIVVDEES 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++EEE + ++ + FM+ Sbjct: 304 HAMDVVVDENNLAIAIGRNGQNVKLASELTGWTINLMSEEESAQKTGQEREGLRELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD+ +A +L+ EGF+ +EE+A V ++E+ IE FDE T E++ RAR L I + Sbjct: 364 LDVDDELADILIDEGFSSLEEIAYVPLAEMLEIEAFDEGTVNELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + + VS++L ++ G+D + L +G+ T +DLA +VD+L+ + Sbjct: 424 EHLE--NVSDDLINLEGMDKSLAATLARHGVLTRDDLADLAVDELVEIA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ ++I AR W E+ Sbjct: 471 ------GIEQERASALISVARAH--WFEE 491 >gi|198282694|ref|YP_002219015.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667138|ref|YP_002424886.1| transcription termination factor NusA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247215|gb|ACH82808.1| NusA antitermination factor [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519351|gb|ACK79937.1| transcription termination factor NusA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 493 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 225/509 (44%), Positives = 333/509 (65%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +ADAVA+EK +DR+V+ + S+ A++ YG I V+++ +TGD RL E Sbjct: 4 ELLYLADAVAHEKDVDREVIFLALEASLVSASKKKYGQDWHIAVDVDRKTGDYVTRRLWE 63 Query: 68 VVEEVENYTC---QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + QI L AR P + G + + LPP++FGR+A Q+AKQVI+QKVR+ Sbjct: 64 VVADDVADYDVDQQIRLSDARKTRPEAEPGDYLEEVLPPVEFGRIAAQTAKQVIVQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDR +F + G+I+SG VKR+E GN IVD+G ++ ++ ++E + RE +RPGDRV++ Sbjct: 124 AERDRIVSDFAIRKGDIVSGLVKRMEKGNAIVDMGRAEAILPKEEMMPREAIRPGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ DVRR QRGPQ+ LSRT P+ ++KLF EVPEI NG++++ +RDPG RAKLAV S+ Sbjct: 184 HLQDVRRVQRGPQLFLSRTSPELLIKLFAQEVPEIGNGMIEIMGAARDPGLRAKLAVRSN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DPVGACVG+RG+RVQ V+ EL+ E+IDIV+W+ D A++VINAL PA V+ +V+DE+ Sbjct: 244 DPRVDPVGACVGLRGNRVQTVINELKGERIDIVIWAADPASYVINALSPAEVSSIVVDEN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E LS AIGR GQNVRLA+QLTGWTI+I+TEEE R+++ + F+Q Sbjct: 304 THSMDVVVGPEHLSQAIGRGGQNVRLATQLTGWTINILTEEEAQAKREEEESTFLNHFIQ 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A LLV+EGF +EE+A V ++E+ I+G DE E++ RAR+ L I Sbjct: 364 DLGVDEDLAALLVSEGFTSIEEVAYVPVAEMMEIDGLDENLVGELRRRARDVLLNKAIAQ 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L S+ G+D + L G+ T EDLA + +L Sbjct: 424 EEQVALSEPAEDLLSLKGMDKGLAHLLASKGVVTSEDLAELAASELCEM----------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +G +++ +++I+ AR W Sbjct: 473 ------VGVDEERAKALILEARAP--WFA 493 >gi|167035704|ref|YP_001670935.1| transcription elongation factor NusA [Pseudomonas putida GB-1] gi|325276164|ref|ZP_08141969.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51] gi|166862192|gb|ABZ00600.1| NusA antitermination factor [Pseudomonas putida GB-1] gi|324098701|gb|EGB96742.1| transcription elongation factor NusA [Pseudomonas sp. TJI-51] Length = 493 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 319/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ ++++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F+ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|54298757|ref|YP_125126.1| transcription elongation factor NusA [Legionella pneumophila str. Paris] gi|53752542|emb|CAH13974.1| Transcription elongation protein nusA [Legionella pneumophila str. Paris] Length = 492 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V NVI+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNVIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491 >gi|226329684|ref|ZP_03805202.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198] gi|225202870|gb|EEG85224.1| hypothetical protein PROPEN_03594 [Proteus penneri ATCC 35198] Length = 502 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 323/518 (62%), Gaps = 26/518 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +I+L+ A+ DPSI++GG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVDEVTQPTREITLEAAQYEDPSIELGGYIEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F++++GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR++ Sbjct: 122 ERAMVVDQFREQLGEIITGVVKKVNRENITLDLGNNAEAVILREDMLPRENFRPGDRLRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +YDVR E RG Q+ ++R+ P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 182 VLYDVRTETRGAQLFVTRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLT-------GWTIDIITEEEDSINRQKDFNE 357 ++V V L+ AIGR GQNVRLA+QL W ++++T +E + Q + N Sbjct: 302 KCTMDVAVESSNLAQAIGRNGQNVRLAAQLLKKHRGDDKWELNVMTADELNAKHQAEANA 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + F + +++DE A +LV EGF+ +EEL V ISE+ +I+G DE+T ++ RA+ L Sbjct: 362 AIEIFTKHLDIDEDFATVLVEEGFSTLEELVYVPISELLAIDGLDEDTVEALRERAKAAL 421 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I++ ++ + + +E+L ++ G++ + L GI T+EDLA +DDL Sbjct: 422 TTIELAQKESLGDNQPAEDLLALEGLERSLAFDLAARGICTLEDLAEQGIDDLTDIE--- 478 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W + Sbjct: 479 --------------GLNSERAGELIMAAR-NICWFGND 501 >gi|15602625|ref|NP_245697.1| transcription elongation factor NusA [Pasteurella multocida subsp. multocida str. Pm70] gi|12721058|gb|AAK02844.1| NusA [Pasteurella multocida subsp. multocida str. Pm70] Length = 494 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 202/509 (39%), Positives = 320/509 (62%), Gaps = 20/509 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+AV+ EK + R+ + + ++ + + Y D+RV IN +TG+ FR Sbjct: 4 ELLLAAEAVSNEKLLPREKIFEALESALALSTKKKYEQEIDVRVVINTKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV N T +I+L+ A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVDEVTNPTKEITLEAAQFDDPNVQLGDYVEDQIESVAFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ + GEI++GTVK+V N+++DLG ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKIVEQFRSQEGEIVTGTVKKVNRDNIVLDLGQQAEAVILREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E +G Q+ ++R P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S+D Sbjct: 184 YKVSPESKGAQLFVTRAKPEMLIELFRIEVPEIGEELIEIKNAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA VT +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVTSIVVDEDSH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNVRLA+QLT WT++++T +E + Q + N+ + FM A+ Sbjct: 304 AMDIAVEPANLAQAIGRNGQNVRLATQLTSWTLNVMTTDELNQKHQAEDNKVLKLFMNAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE AH+L+ EGF+ +EELA V +SE+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 EIDEDFAHILIEEGFSTLEELAYVSVSELTAIDGLEDEDLVEELQARAKNAITAAALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ I + L E I T+E+LA VDDL Sbjct: 424 EALKQAHIEDRLLALEGMNRHIALKLAEKQITTLEELAEQGVDDLADIE----------- 472 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +Q I+ AR + W + Sbjct: 473 ------DLTAEQAADFIMAAR-NICWFSE 494 >gi|1075364|pir||D64114 transcription termination-antitermination factor nusA - Haemophilus influenzae (strain Rd KW20) Length = 507 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 16 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 76 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 136 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 195 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 196 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 255 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 256 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 315 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 316 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 375 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 376 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 435 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 436 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 485 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 486 -------LTAEQAADLIMAAR-NICWFGEE 507 >gi|302878488|ref|YP_003847052.1| NusA antitermination factor [Gallionella capsiferriformans ES-2] gi|302581277|gb|ADL55288.1| NusA antitermination factor [Gallionella capsiferriformans ES-2] Length = 490 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 321/508 (63%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA++ EK++D++VV S + ++ A + + +D+RV I+ TG+ FR E Sbjct: 4 EVLLLVDALSREKNVDKEVVFSALESALASATKKRFEDEADVRVAIDRNTGEFESFRCWE 63 Query: 68 VVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+++ E I L+ A RDP+I +GG + +PL +DFGR+ Q+AKQVI QK+R+A Sbjct: 64 VMDDETFETPDLHIKLEEALKRDPAIALGGFIEEPLESVDFGRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SGTVKR+E G+ IV+ G + ++ RD+ I +EN+R GDRV+++ Sbjct: 124 EREQILADFMDRKEHLVSGTVKRLERGSAIVEFGKIEALLPRDQMIPKENMRIGDRVRAH 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQV+LSRT +VKLF +EVPEI ++++ +RDPGSRAK+AV S D Sbjct: 184 LLRVDRGPRGPQVILSRTSTDLLVKLFELEVPEIEENLLEIVGAARDPGSRAKIAVQSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRGSRVQ+V EL E++DI++WS D AT+VIN+L PA V+ +V+DED Sbjct: 244 QRIDPIGTCVGMRGSRVQSVTNELAGERVDIILWSEDPATYVINSLAPAEVSSIVVDEDR 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +E L+ AIGR GQNVRLAS++TGW ++I+T E+ ++F + FM+ Sbjct: 304 HSMDVVVEEENLAQAIGRGGQNVRLASEMTGWELNIMTVEQAQEKHDQEFVKTRAIFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGFA +EE+A V + E+ IE FDE+T E++ RAR L + + Sbjct: 364 LDVDEEVADILVQEGFATLEEVAYVPVEEMLEIETFDEDTVNELRSRARNALLNAALVSE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ + L + G++ ++ L G+ T E LA VD+L+ S Sbjct: 424 EKVEHGI--DGLLKLDGMNDELARELAVKGVTTQEQLADLDVDELVELS----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D ++I+ AR W Sbjct: 471 ------GLDADVANALIMAARAP--WFA 490 >gi|70734336|ref|YP_257976.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf-5] gi|68348635|gb|AAY96241.1| N utilization substance protein A [Pseudomonas fluorescens Pf-5] Length = 493 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 210/509 (41%), Positives = 320/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE ++++ + L AR+ P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEEADLDDPAVETWLSKARETHPDAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|145637799|ref|ZP_01793448.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] gi|145268992|gb|EDK08946.1| transcription elongation factor NusA [Haemophilus influenzae PittHH] Length = 495 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMITREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ + L E I T+E+LA VDDL E Sbjct: 424 EALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDLADIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|319762633|ref|YP_004126570.1| transcription termination factor nusa [Alicycliphilus denitrificans BC] gi|330824723|ref|YP_004388026.1| NusA antitermination factor [Alicycliphilus denitrificans K601] gi|317117194|gb|ADU99682.1| transcription termination factor NusA [Alicycliphilus denitrificans BC] gi|329310095|gb|AEB84510.1| NusA antitermination factor [Alicycliphilus denitrificans K601] Length = 494 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 200/514 (38%), Positives = 325/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY D+RV I+ ++GD FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGDVDLRVSIDRDSGDYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R P I++G + +P+ + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVPDIEVGEYIEEPVESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++I++ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDLIIESGRVEGRLRRSEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETDAARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFESLEEVAYVPLQEMLEIESFDEDTVNELRVRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L + G+ ++ L + G+ T +DLA ++D+L + Sbjct: 422 AREESMG--SVSQDLRDLEGLTPELIAKLADAGVNTRDDLADLAIDELTELTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + +++I+ AR W ++ Sbjct: 474 -----------SAEDAKALIMKAREH--WFTGQE 494 >gi|52842972|ref|YP_096771.1| transcription elongation factor NusA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630083|gb|AAU28824.1| N utilization substance protein A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 492 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491 >gi|149926272|ref|ZP_01914534.1| transcription elongation factor NusA [Limnobacter sp. MED105] gi|149825090|gb|EDM84302.1| transcription elongation factor NusA [Limnobacter sp. MED105] Length = 489 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 316/508 (62%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + DA+A EK++D+D+V + ++ A + + D+RV I+ +TGD FR E Sbjct: 4 ELLLLVDALAREKNVDKDIVFGALELALASATKKRFDEEVDVRVSIDRDTGDYDTFRRWE 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ + Q+ L A D ++G + + L P++FGR+ Q+AKQVI+Q+VR+A Sbjct: 64 VVTEEDFYDPAYQMVLDQALKHDEEAEMGDFIEEELEPVEFGRIGAQAAKQVILQRVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ +I+ G VKR+E G+ IV+ G + + RD+ I RE+LRPGDRV++Y Sbjct: 124 EREQILQDFLDRGDKIVIGQVKRMERGDAIVESGRIEARLPRDQMIPRESLRPGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ V R RG QV+LSRT P+F+ LF MEVPEI G +++K +RDPG RAK+AV + D Sbjct: 184 LWKVDRMARGQQVILSRTSPEFIKALFAMEVPEIEQGHLEIKGAARDPGMRAKIAVLAHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V +V+DED Sbjct: 244 RRIDPIGTCVGVRGSRVQAVTQELGGERVDIVLWSEDPAQFVIGALSPATVQSIVVDEDQ 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+V + +L+ AIGR GQNVRLAS LTGW I+I+T EE + +++ + + F Sbjct: 304 HVMEVVVDEAELAQAIGRSGQNVRLASDLTGWQINIMTPEESAKRSEEEIGKLRELFTSK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A++L+ EGF+ ++++A V I+E+ IE FD +T E++ RAR L I + Sbjct: 364 LDVDEKVANILIEEGFSGLQKVAYVPIAEMQEIEAFDADTVEELRTRARNALLTEAIARE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + + G +L SI G+D+ + L I E LA +VD+L+ + Sbjct: 424 EMVEGAG---DLMSIEGVDADLVGKLAAAEISDREGLAELAVDELVEIA----------- 469 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +D+ +I+ AR W E Sbjct: 470 ------GIEEDRARDIIMKARAH--WFE 489 >gi|254447046|ref|ZP_05060513.1| NusA antitermination factor [gamma proteobacterium HTCC5015] gi|198263185|gb|EDY87463.1| NusA antitermination factor [gamma proteobacterium HTCC5015] Length = 499 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 213/518 (41%), Positives = 325/518 (62%), Gaps = 25/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +ADAV+ EK +D+DV+ + ++ A R + D RV IN E G FR Sbjct: 3 NKEILLVADAVSNEKGVDKDVIFEALEIALATATRKKHPDDIDARVSINREDGSYETFRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ +EN ++ A D DPS +G V +P+ +D+GR+A Q+AKQVI+QKV Sbjct: 63 WLVIEDDLVMENVDAELRHMDAIDIDPSYKVGDYVEEPIESVDYGRIAAQTAKQVIVQKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + EF+D+ GE++ G VKRVE GNV VDLG + +G I R+E I RE++RPGDR Sbjct: 123 REAERMQVVEEFQDREGELVMGLVKRVERGNVYVDLGGNAEGFIPREEMIPRESVRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ + +VR E RGPQ+ +SRT PQF+++LF +EVPEI G++ + + SRDPG RAK+AV Sbjct: 183 IRGLLREVRSELRGPQLFVSRTDPQFLIELFKIEVPEIGQGMIDILSASRDPGVRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D +DPVGACVGMRGSRVQ+V EL E++DI+++ + A FVINA+ PA V +V+ Sbjct: 243 RSNDPRLDPVGACVGMRGSRVQSVSNELSGERVDIILFDDNPAQFVINAMSPAEVVSIVV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED +++ V E+LS AIGR GQN+RLAS+LT W ++++ EE + +++ ++ + Sbjct: 303 DEDNNSMDLAVTNEKLSQAIGRGGQNIRLASELTDWQLNVMDEESYAAKNEEEAHKYVEV 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF +EE+A V ++E IE FD+ E++ RAR+ L Sbjct: 363 FMEQLDVDEEVATILVQEGFTSIEEVAYVPMAEFQEIEEFDDGIIEELRNRARDALLTKA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ + ++L + +D ++ AL G+ TME+LA +VDDL+ Sbjct: 423 ILNEES--DAQPEQDLLDMETMDEEMAYALAAIGVTTMEELAEQAVDDLMVID------- 473 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 +++ ++I+ AR W + + + Sbjct: 474 ----------DMDEERASALIMKAREP--WFAEAEGQE 499 >gi|322514415|ref|ZP_08067458.1| N utilization substance A [Actinobacillus ureae ATCC 25976] gi|322119663|gb|EFX91721.1| N utilization substance A [Actinobacillus ureae ATCC 25976] Length = 493 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 197/508 (38%), Positives = 317/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFNRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN R GDRV+ + Sbjct: 124 NKVIDQFRSQLNTIITATVKKVNRDQIILDLGNQAEAVIVREDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFVTRAKPIMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ ++ Sbjct: 304 AMDIAVESKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVIDLFVTSL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A +LV EGF+ +EELA + +SE+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 EIDQEFAQILVDEGFSSLEELAFIPVSELTAIDGLEDEDLVEELQTRAKNVITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 424 EALQQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493 >gi|26991396|ref|NP_746821.1| transcription elongation factor NusA [Pseudomonas putida KT2440] gi|148549780|ref|YP_001269882.1| transcription elongation factor NusA [Pseudomonas putida F1] gi|24986465|gb|AAN70285.1|AE016669_3 N utilization substance protein A [Pseudomonas putida KT2440] gi|148513838|gb|ABQ80698.1| NusA antitermination factor [Pseudomonas putida F1] gi|313500621|gb|ADR61987.1| NusA [Pseudomonas putida BIRD-1] Length = 493 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 320/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ ++++ + L +D P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F++ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|121998529|ref|YP_001003316.1| transcription elongation factor NusA [Halorhodospira halophila SL1] gi|121589934|gb|ABM62514.1| NusA antitermination factor [Halorhodospira halophila SL1] Length = 501 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 222/516 (43%), Positives = 334/516 (64%), Gaps = 25/516 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A + EK +DR+V+ + ++ A R + D RV ++ ++GD + +R E Sbjct: 4 EILLVVEATSNEKGVDREVIFEAIEAALASATRKRHLEDIDARVAVDRQSGDYATYRRWE 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + VE QISL+ AR+RD + ++GG V +P+ +DFGR+A Q+AKQVI+QKVRE Sbjct: 64 VVPDEESVEEPQRQISLERARERDENAEVGGYVEEPIESVDFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVK 183 AER + ++ ++GE+++G+VKR+E G+ I+DLG N++ ++ R++ I RE +RP DR++ Sbjct: 124 AERAQIVDAYQHRIGELVNGSVKRMERGSAIIDLGENTEALVSREDLIPREAVRPNDRIR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DVR E RGPQ+ +SRT +F+V+LF +EVPE+ G++++ +RDPG RAK++V + Sbjct: 184 GYLRDVRSEPRGPQLFVSRTANEFLVELFKIEVPEVGQGLIEILGAARDPGMRAKISVRA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVGMRGSRVQAV EL E+IDI+ W + A FVINAL PA V +V+DE Sbjct: 244 LDPRIDPVGACVGMRGSRVQAVSNELSGERIDIIPWDENPAQFVINALAPAEVESIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D G ++V V +EQLS AIGR GQNVRLAS+LTGW ++++T EE +++ E Q F+ Sbjct: 304 DRGAMDVAVAEEQLSQAIGRGGQNVRLASELTGWELNVMTAEEAEAKSEREAGELVQLFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE +A +LV EGF+ +EE+A V +E+ IE FDE+ ++ RAR+ L I Sbjct: 364 EHLDVDEDVAGVLVQEGFSSIEEVAYVPTAELLEIEEFDEDIVEALRSRARDVLLAQAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ E SEEL ++ G+D + AL E G+ T+EDLA SVDDL+ Sbjct: 424 --EEANENQPSEELLALEGMDEQTAKALAERGVATVEDLADQSVDDLMEVE--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 G +D+ +I+ AR W + + Sbjct: 473 --------GMDEDRAGQLIMKAREP--WFAASEGGE 498 >gi|262277759|ref|ZP_06055552.1| transcription termination factor [alpha proteobacterium HIMB114] gi|262224862|gb|EEY75321.1| transcription termination factor [alpha proteobacterium HIMB114] Length = 514 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 270/505 (53%), Positives = 368/505 (72%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + EL++IADAVA EKSID+D+VLS M +I+KAAR+ YG+ ++I V I+ ETG I L R Sbjct: 7 DSTELIRIADAVAAEKSIDKDLVLSSMETAIEKAARTRYGSENEIYVSIDRETGIIELGR 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 L+VVE+V +ISL A+ +DPS +IGG + + LPP+DFGR+A Q+AKQVI ++R+ Sbjct: 67 KLKVVEKVLESHSEISLDEAKQKDPSAEIGGEIKEELPPIDFGRIAAQTAKQVISVQIRD 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERDRQ+ EFKDKVGEI+SG VKR E+GN+IVDL S+ +IRR+E I RENL+ GDRVK+ Sbjct: 127 AERDRQFNEFKDKVGEILSGIVKRSEFGNIIVDLQKSEAIIRREELIPRENLKNGDRVKA 186 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y YDVRRE +GPQ+ LSR HPQF+ KLF EVPEIY G + +K+V+RDPGSRAK+ V S Sbjct: 187 YCYDVRRENKGPQIFLSRAHPQFLAKLFQQEVPEIYEGTISIKSVARDPGSRAKICVQSK 246 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DSSIDPVGACVGMRGSRVQ +V EL+ EKIDI+ W+ D + V++AL PA V KVVLD++ Sbjct: 247 DSSIDPVGACVGMRGSRVQTIVNELQGEKIDIINWTEDVGSLVVSALAPAEVMKVVLDQE 306 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R EV++ + LS AIGRRGQNVRLAS+L + IDI+T++E+S RQ +F E + ++ Sbjct: 307 NRRAEVVIDENNLSKAIGRRGQNVRLASKLLDYEIDILTDKEESEKRQSEFKENSSKLIK 366 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +D +A LLV+EGF ++++ + E I+GFDEETA E+Q RA+E+LE + + Sbjct: 367 ALEIDTTMAQLLVSEGFNTIKDINNANVDEFLKIDGFDEETAKELQDRAKEFLEEEEKEI 426 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K++ELG+ E+L + G+ + + LGE IKT++D A S D+++G + G EKF Sbjct: 427 ASKVQELGIEEDLANHKGLTLGMLLTLGEENIKTLKDFAELSTDEIVGGYDEIKGKREKF 486 Query: 485 DGFLSSLGTPKDQVESMIIHARYKM 509 DG L P+ E +I+ AR K+ Sbjct: 487 DGVLEEFNIPRKDAEDLIMRARKKV 511 >gi|16273197|ref|NP_439435.1| transcription elongation factor NusA [Haemophilus influenzae Rd KW20] gi|260581405|ref|ZP_05849219.1| transcription termination factor NusA [Haemophilus influenzae RdAW] gi|260582501|ref|ZP_05850292.1| transcription termination factor NusA [Haemophilus influenzae NT127] gi|1171872|sp|P43915|NUSA_HAEIN RecName: Full=Transcription elongation protein nusA gi|1574741|gb|AAC22932.1| N utilization substance protein A (nusA) [Haemophilus influenzae Rd KW20] gi|260091947|gb|EEW75896.1| transcription termination factor NusA [Haemophilus influenzae RdAW] gi|260094481|gb|EEW78378.1| transcription termination factor NusA [Haemophilus influenzae NT127] Length = 495 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|145630836|ref|ZP_01786614.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|145633248|ref|ZP_01788979.1| transcription elongation factor NusA [Haemophilus influenzae 3655] gi|145634372|ref|ZP_01790082.1| transcription elongation factor NusA [Haemophilus influenzae PittAA] gi|145641320|ref|ZP_01796899.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|148825866|ref|YP_001290619.1| transcription elongation factor NusA [Haemophilus influenzae PittEE] gi|229845094|ref|ZP_04465229.1| transcription elongation factor NusA [Haemophilus influenzae 6P18H1] gi|229846821|ref|ZP_04466928.1| transcription elongation factor NusA [Haemophilus influenzae 7P49H1] gi|144983718|gb|EDJ91178.1| transcription elongation factor NusA [Haemophilus influenzae R3021] gi|144986094|gb|EDJ92684.1| transcription elongation factor NusA [Haemophilus influenzae 3655] gi|145268352|gb|EDK08346.1| transcription elongation factor NusA [Haemophilus influenzae PittAA] gi|145273863|gb|EDK13730.1| transcription elongation factor NusA [Haemophilus influenzae 22.4-21] gi|148716026|gb|ABQ98236.1| transcription elongation factor NusA [Haemophilus influenzae PittEE] gi|229810310|gb|EEP46029.1| transcription elongation factor NusA [Haemophilus influenzae 7P49H1] gi|229811930|gb|EEP47624.1| transcription elongation factor NusA [Haemophilus influenzae 6P18H1] gi|309973011|gb|ADO96212.1| Transcription elongation factor NusA [Haemophilus influenzae R2846] Length = 495 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 195/510 (38%), Positives = 323/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ + L E I T+E+LA VDDL E Sbjct: 424 EALKKANIEDRLLNLDGMNRHVAFRLAEKQITTLEELAEQGVDDLADIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|296108417|ref|YP_003620118.1| N utilization substance protein A [Legionella pneumophila 2300/99 Alcoy] gi|295650319|gb|ADG26166.1| N utilization substance protein A [Legionella pneumophila 2300/99 Alcoy] Length = 492 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVAKEQLSQAIGRNGQNVRLASQLTGWTLNVMTMEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491 >gi|209694189|ref|YP_002262117.1| transcription elongation factor NusA [Aliivibrio salmonicida LFI1238] gi|208008140|emb|CAQ78282.1| transcription elongation protein NusA [Aliivibrio salmonicida LFI1238] Length = 495 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 194/511 (37%), Positives = 313/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + ++RV I+ +TG + FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSALEIEVRVAIDRKTGAVETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +VE+ T +IS++ A+ D +I+IGG + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVAVAQVEHPTLEISIEAAQFEDETIEIGGFIEDDIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +F D GE+I+G VK+V +IVDLG N++ VI R++ + REN RPGDRV+ Sbjct: 122 ERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGSNAEAVILREDQLPRENFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ E RG Q+ ++R+ + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 LLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +L E+IDIV+W + A FVIN++ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSNDLGGERIDIVLWDDNPAQFVINSMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGW ++++T + + Q++ F++ Sbjct: 302 NNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D A LLV EGF +EE+A V ++E+ +E DEET ++ RA+E L + + Sbjct: 362 HLDIDADFAQLLVEEGFTTLEEIAYVPVNELLEVEALDEETVDLLRTRAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +E+L ++ G++ ++ G+ T+EDLA VD+L Sbjct: 422 EESLDGIEPAEDLLALEGLERELAFKFAAKGVITLEDLADQGVDELSDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +I+ AR + W E Sbjct: 472 -------DLTEERAGELIMAAR-NICWFSDE 494 >gi|104780027|ref|YP_606525.1| transcription elongation factor NusA [Pseudomonas entomophila L48] gi|95109014|emb|CAK13710.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Pseudomonas entomophila L48] Length = 493 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 318/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ ++++ + L +D P IG V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDENDLDDPAIETWLSKIQDTHPDAKIGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLVLSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLT WT++++TE++ +Q + + + F+ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTAWTLNVMTEKDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +++L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPADDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|165976050|ref|YP_001651643.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149948|ref|YP_001968473.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249647|ref|ZP_07335852.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253712|ref|ZP_07339849.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247608|ref|ZP_07529651.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249837|ref|ZP_07531813.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252189|ref|ZP_07534087.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307263276|ref|ZP_07544894.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876151|gb|ABY69199.1| transcription termination-antitermination factor, N utilization substance protein A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915079|gb|ACE61331.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647437|gb|EFL77656.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651459|gb|EFL81610.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855878|gb|EFM88038.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858139|gb|EFM90219.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860333|gb|EFM92348.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871338|gb|EFN03064.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 493 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 201/508 (39%), Positives = 318/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL+ A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493 >gi|32033691|ref|ZP_00133986.1| COG0195: Transcription elongation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208120|ref|YP_001053345.1| transcription elongation factor NusA [Actinobacillus pleuropneumoniae L20] gi|126096912|gb|ABN73740.1| transcription elongation protein NusA [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 493 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 201/508 (39%), Positives = 317/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ L+R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493 >gi|308050585|ref|YP_003914151.1| NusA antitermination factor [Ferrimonas balearica DSM 9799] gi|307632775|gb|ADN77077.1| NusA antitermination factor [Ferrimonas balearica DSM 9799] Length = 500 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 207/514 (40%), Positives = 326/514 (63%), Gaps = 24/514 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK++ R+ + + ++ A + Y D+RV I+ TG+ FR E Sbjct: 4 EILLVAEAVSNEKAVPREKIFEALEFALATATKKKYELEIDVRVAIDQRTGEFDTFRRWE 63 Query: 68 VVEE---VENYTCQISLKVAR--DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V+E+ +E T Q+ L AR + D +I++G V + + + F R+ Q+AKQVI+QKV Sbjct: 64 VIEDDAEMEVPTRQVFLSSARAMEEDETIEVGDFVEEQIESITFDRITTQTAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + +FKDK GE+++G VK+V ++IVDLGN+ D ++ R+E + REN RPGDR Sbjct: 124 REAERAQVVEQFKDKEGELVTGVVKKVNRDSIIVDLGNNADAILFREEMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ ++ VR E RG Q+ LSRT P+ +++LF +EVPEI ++++ +RDPGSRAK+AV Sbjct: 184 VRALLHSVRLESRGSQLFLSRTRPEMLIELFRIEVPEIGEEMIEIVGAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQAV EL E+IDIV+W+ ++A +VINA+ PA V+ +V+ Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWNDNTAQYVINAMAPADVSSIVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DED ++V V K+ L+ AIGR GQNVRLASQ+TGW ++++T E+ Q + + Sbjct: 304 DEDAKSMDVAVEKDSLAQAIGRNGQNVRLASQVTGWELNVMTTEDMQEKHQAESAKLVTQ 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F++++++D+ A +LV EGF +EE+A V ++E+ IEG DEET ++ RA+ L Sbjct: 364 FVESLDIDDEFASVLVDEGFTSLEEIAYVPVNELLEIEGLDEETVEALRERAKAALTTRA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + +E+L ++ G++ + L G+ T+EDLA +DDL E Sbjct: 424 LASEEALDGAEPAEDLLNLEGMERHLAYVLASRGVVTLEDLADQGIDDLSDIEE------ 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 ++Q +I+ AR + W ++ Sbjct: 478 -----------LSEEQAGELIMAAR-NICWFGED 499 >gi|54295603|ref|YP_128018.1| transcription elongation factor NusA [Legionella pneumophila str. Lens] gi|53755435|emb|CAH16931.1| Transcription elongation protein nusA [Legionella pneumophila str. Lens] gi|307611645|emb|CBX01332.1| transcription elongation protein nusA [Legionella pneumophila 130b] Length = 492 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 327/508 (64%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+A++ E+ + +DV++ + +++ A R + G +R++I+ +TGD FR + Sbjct: 4 ELLLVAEALSNERGVSKDVIILAIQAALESATRKILGLDIGVRIKIDSKTGDYETFRYWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EE+E Q+SL+ A++R PS +G + + +P ++FGR+ Q+A+QVI+QKVREA Sbjct: 64 VVNEEELEFPDRQLSLEQAKERKPSAAVGDRIEEIIPSIEFGRIEAQTARQVIMQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER+ +F+ K+G++I GTVK+V N+I+DLG ++ + R E + E RP DRV++ Sbjct: 124 ERELIIDQFRSKLGQLIYGTVKKVTRDNIIIDLGGKAEAFLPRSEMLPHEMFRPNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI I+ +KA +RDPG+RAK+AV ++ Sbjct: 184 YLYEITPQARGPQLFVSRTRNEMLIELFRIEVPEIGENIIDIKAAARDPGNRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA +T +V+DED Sbjct: 244 DGRIDPIGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPADITSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V KEQLS AIGR GQNVRLASQLTGWT++++T EE Q++ ++ F Sbjct: 304 THTMDLAVVKEQLSQAIGRNGQNVRLASQLTGWTLNVMTTEEFESKNQEESSKIVNLFTS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+ +DE IA LLVA GF+ +EE+A V E+ +IE FDEE E++ RA + L + ++ Sbjct: 364 ALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDEEIVEELRNRANDKLLEMALSS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K + + L ++ G+ + L GI TMEDLA SVD+L+ Sbjct: 424 GKGLSG-TPDDSLINMEGMTEDLANKLASKGITTMEDLAEQSVDELMEIE---------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 473 -------GISEEKAGALIMKAREP--WF 491 >gi|307245494|ref|ZP_07527581.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254448|ref|ZP_07536285.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258907|ref|ZP_07540638.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853553|gb|EFM85771.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862589|gb|EFM94546.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866931|gb|EFM98788.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 493 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 200/508 (39%), Positives = 316/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G+D I L E GI T+E LA + DDL E Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEGLAEQATDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493 >gi|307261095|ref|ZP_07542774.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869227|gb|EFN01025.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 493 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 200/508 (39%), Positives = 317/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKEMDIDVRVVIDRKTGDFQTFRRWI 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL A+ +PS+ +G +V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 VVEQVHNMTREISLDAAQYENPSVQLGDIVEDEVDSIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ II+ TVK+V +I+DLGN ++ VI R++ + REN RPGDRV+ + Sbjct: 124 NKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAVIVREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K SRDPGSRAK+AV S D Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEDVIEIKGASRDPGSRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPAEVSAIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ Q + N+ F+ A+ Sbjct: 304 AMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTTEDLDKKHQAEDNKVISLFVSAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE A E+Q RA+ + + + Sbjct: 364 EIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDENLAEELQTRAKNAITAKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G+D I L E GI T+E+LA + DDL E Sbjct: 424 EALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELAEQATDDLSDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 D+ +I+ AR ++ W Sbjct: 474 -------LSADKASELIMAAR-QICWFS 493 >gi|301156201|emb|CBW15672.1| transcription termination/antitermination L factor [Haemophilus parainfluenzae T3T1] Length = 495 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 320/510 (62%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +++L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEMTLEAAQFEDPNVQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+ + G+I++GTVK+V ++I+DLG ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+D Sbjct: 184 YKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM + Sbjct: 304 SMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMDKL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V +SE+ +I+G DE+ E+QGRA++ + + Sbjct: 364 GLDEDFAQILVDEGFTSLEEVAYVPVSELTAIDGLEDEDLIEELQGRAKDAITAAAAAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 424 EALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLADIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q I+ AR + W +E Sbjct: 474 -------LTAEQAADFIMAAR-NICWFSEE 495 >gi|71281620|ref|YP_268927.1| transcription termination factor NusA [Colwellia psychrerythraea 34H] gi|71147360|gb|AAZ27833.1| transcription termination factor NusA [Colwellia psychrerythraea 34H] Length = 497 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 192/512 (37%), Positives = 311/512 (60%), Gaps = 22/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DAV+ EK++ R+ + M +++ A + Y +RV I+ +G+ FR Sbjct: 4 EILLVVDAVSNEKALPRESIFEAMETALETATKKKYEGDIIVRVSIDRISGEFDTFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++E+ +EN +I L A+ P +++G D + + F RV Q+AKQVI+QK+RE Sbjct: 64 IIEDGEPMENPYAEIGLAAAQYDAPELNVGDYSEDQIESVKFDRVTTQTAKQVIVQKIRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER +++ +GEI++G VK+ +VIVDLGN+ + VI RD+ + RE RPGDRV+ Sbjct: 124 AERALVTEAYQEHLGEIVTGVVKKASRESVIVDLGNNAEAVIYRDDMLPRETFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+++ E RG Q+ LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV S Sbjct: 184 GLLYEIKPEARGAQLFLSRTKPEMLIELFRVEVPEIGEEMLEIKGAARDPGSRAKIAVKS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV EL E++DIV++ + A +VINA+ PA V +++DE Sbjct: 244 NDKRIDPVGACVGMRGSRVQAVSGELGGERVDIVLYDDNVAQYVINAMSPAEVASIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D G +++ V + L++AIGR GQN+RLASQLTGW ++++T + Q + ++ F+ Sbjct: 304 DKGTMDIAVEEANLAMAIGRSGQNIRLASQLTGWELNVMTVADMKEKHQAENDKVLNLFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A LL EGF +EE+A V +E+ I+G DEE ++ RA+E L + Sbjct: 364 DKLDLDEDFATLLAEEGFTSLEEIAYVPTAEMLDIDGLDEEIIEALRERAKEALTTQALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + +++L + G++ + L G++T+EDLA +D++ E Sbjct: 424 SEETLEGSEPAQDLLDLDGLERHLAFVLASRGVRTLEDLAEQGIDEISDIEE-------- 475 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W +E Sbjct: 476 ---------LDETKAGELIMAAR-NICWFNEE 497 >gi|170719906|ref|YP_001747594.1| transcription elongation factor NusA [Pseudomonas putida W619] gi|169757909|gb|ACA71225.1| NusA antitermination factor [Pseudomonas putida W619] Length = 493 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 319/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ ++++ + L + P +G V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDEADLDDPAIETWLAKIHETHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + ++++VGEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT PQ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDENPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE++ +Q + + + F++ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + L G+ EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|120612038|ref|YP_971716.1| NusA antitermination factor [Acidovorax citrulli AAC00-1] gi|120590502|gb|ABM33942.1| NusA antitermination factor [Acidovorax citrulli AAC00-1] Length = 494 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 199/514 (38%), Positives = 326/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF+ +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFSSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L + Sbjct: 422 AREESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDELTALTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +++I+ AR W ++ Sbjct: 474 -----------SEEEAKALIMKAREH--WFAGQE 494 >gi|90412484|ref|ZP_01220487.1| transcription elongation factor NusA [Photobacterium profundum 3TCK] gi|90326521|gb|EAS42927.1| transcription elongation factor NusA [Photobacterium profundum 3TCK] Length = 495 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 196/511 (38%), Positives = 315/511 (61%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WIAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER++ +F D GE+I+G VK+V V++DLGN+ + VI+RD+ + REN R GDR++ Sbjct: 122 EREQIVEQFMDNEGELITGIVKKVNRDAVVIDLGNNAEAVIQRDDQLPRENFRSGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ Q++ F + Sbjct: 302 NHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHQEEAQVSIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ RA+ L + + Sbjct: 362 HLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRDRAKAALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +L + G++ ++ L GI T+EDLA DDLL E Sbjct: 422 EESFEGVEPAADLLGLDGLERELAFKLAAKGICTLEDLADQGTDDLLDLEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W E Sbjct: 473 --------MDEAKAGELIMAAR-NICWFSDE 494 >gi|301170017|emb|CBW29621.1| transcription termination/antitermination L factor [Haemophilus influenzae 10810] Length = 495 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 193/510 (37%), Positives = 322/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + + F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDKKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 424 EALKKANIEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|326316665|ref|YP_004234337.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373501|gb|ADX45770.1| NusA antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 494 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 200/514 (38%), Positives = 326/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVELALAQATKKLYPGEVDIRVAIDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDAQERIADIEVGEYIEEGIESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDASRRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + GVS+ L + G+ S++ L E G+ T +DLA ++D+L + Sbjct: 422 AREESVE--GVSQNLRDLDGMTSELIGKLAEGGVHTRDDLADLAIDELTALTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +++I+ AR W ++ Sbjct: 474 -----------SEEEAKALIMKAREH--WFAGQE 494 >gi|329123362|ref|ZP_08251927.1| N utilization substance A [Haemophilus aegyptius ATCC 11116] gi|327471362|gb|EGF16814.1| N utilization substance A [Haemophilus aegyptius ATCC 11116] Length = 507 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 194/510 (38%), Positives = 322/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 16 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 76 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ + Sbjct: 136 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 195 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 196 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 255 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 256 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 315 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 316 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 375 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 376 KLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 435 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 436 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 485 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 486 -------LTAEQAADLIMAAR-NICWFGEE 507 >gi|253997782|ref|YP_003049845.1| transcription elongation factor NusA [Methylovorus sp. SIP3-4] gi|253984461|gb|ACT49318.1| NusA antitermination factor [Methylovorus sp. SIP3-4] Length = 488 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 331/508 (65%), Gaps = 25/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +++EN Q+ +R + +G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 VVSDDDLENPAAQMYTDD--ERAEGLSLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+ Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ + Sbjct: 422 EKLEEA--SESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELMEMA----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ + +I+ AR W Sbjct: 469 ------NMDAERAKQLIMTARAP--WFA 488 >gi|297537315|ref|YP_003673084.1| transcription termination factor NusA [Methylotenera sp. 301] gi|297256662|gb|ADI28507.1| transcription termination factor NusA [Methylotenera sp. 301] Length = 488 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 207/507 (40%), Positives = 332/507 (65%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RV I+ E+G+ FR + Sbjct: 4 EILLLVDALAHEKNVSKEVIFTALELALASATKKKHHDDADVRVSIDRESGEYETFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE +EN QI + +++G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 YVEYDLLENSAYQI--DEESEHAKGLNVGDYYEEPLESIEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV+++ Sbjct: 122 EREQILEDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P F+V+LF +EVPEI G+++++A +RDPG R+K+AV S+D Sbjct: 182 LSRIERGGRGPQLILSRITPDFLVRLFELEVPEIEEGLLEIRAAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRIDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q +F +Q FM Sbjct: 302 HSMDVVVDEEQLALAIGRNGQNVRLASELTGWTLNILTVDQAAQKNQDEFAGVSQLFMDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDAEVAEILVQEGFSTLEEIAYVPLAEMNEIEAFDEDTIEELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E SE+L ++ G+D++ L G+ TM+DLA +VD+L + Sbjct: 422 EKVEEA--SEDLLAMEGMDAETAHLLASKGVATMDDLAELAVDELEELT----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 469 ------GMDAERAKTLIMTARAP--WF 487 >gi|325578298|ref|ZP_08148433.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392] gi|325160034|gb|EGC72163.1| N utilization substance A [Haemophilus parainfluenzae ATCC 33392] Length = 495 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 321/510 (62%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + Y +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIALSTKKKYDYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +++L+ A+ DP+I +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEMTLEAAQFEDPNIQLGDYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+ + G+I++GTVK+V ++I+DLG ++ VI R++ + REN RPGDRV+ + Sbjct: 124 AKVVEQFRSEEGKIVTGTVKKVNRESIILDLGNKAEAVIMREDMLPRENFRPGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R P+ +++LF +EVPEI +++++ +RDPGSRAK+AV S+D Sbjct: 184 YKVNPESKTAQLFVTRAKPEMLIELFRIEVPEIGEEMLEIRGAARDPGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A +VINA+ PA VT +++DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQYVINAMAPADVTSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T E+ + Q + + FM + Sbjct: 304 SMDIAVNADNLAQAIGRNGQNVRLATQLTGWTLNVMTTEQLNEKHQAEDTKVLNLFMDKL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V +SE+++I+G DE+ E+QGRA++ + + Sbjct: 364 GLDEEFAQILVDEGFTSLEEVAYVPVSELSAIDGLEDEDLIEELQGRAKDAITAAAAAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ + + L ++ G++ I L E I T+E+LA VDDL E Sbjct: 424 EALKKANIEDRLLNLEGMNRHIAFKLAEKQITTLEELAEQGVDDLADIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q I+ AR + W +E Sbjct: 474 -------LTAEQAADFIMAAR-NICWFSEE 495 >gi|319776227|ref|YP_004138715.1| Transcription elongation protein NusA [Haemophilus influenzae F3047] gi|317450818|emb|CBY87040.1| Transcription elongation protein NusA [Haemophilus influenzae F3047] Length = 495 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 194/510 (38%), Positives = 322/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 KLDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|254496140|ref|ZP_05109038.1| transcription elongation factor NusA [Legionella drancourtii LLAP12] gi|254354627|gb|EET13264.1| transcription elongation factor NusA [Legionella drancourtii LLAP12] Length = 502 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 205/518 (39%), Positives = 332/518 (64%), Gaps = 33/518 (6%) Query: 8 ELLQIADAVAY---------EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 ELL +A+A++ E+ + ++V++ + +++ A R ++G +R++++P TG Sbjct: 4 ELLLVAEALSKISKPLSVPTERGVSKEVIILAIQAALESATRKIFGLEIGVRIKLDPRTG 63 Query: 59 DISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 + FR +VV ++VE Q++L A++R+P+I +G + + +P ++FGR+ Q+A+ Sbjct: 64 EYETFRFWDVVADEDDVEFPEHQLTLAQAKERNPAITVGERIEESIPSIEFGRIEAQAAR 123 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRE 174 QVI+QKVREAERD +F+ K+G++I G+VK+V N+I+DLG ++ + R E + E Sbjct: 124 QVIMQKVREAERDLVIEQFRSKLGQLIYGSVKKVTRDNIIIDLGGKAEAFLPRTEMLPHE 183 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 RP DRV++Y+Y++ + RGPQ+ +SRT + +++LF +EVPEI ++ VKA +R+PG Sbjct: 184 MFRPNDRVRAYLYEIIPQARGPQLFVSRTRNEMLIELFRIEVPEIGENVIDVKAAAREPG 243 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +RAK+AV ++D IDPVGACVGMRG+RVQAV +EL E++DI++W + A VINA+ PA Sbjct: 244 NRAKIAVKTNDGRIDPVGACVGMRGARVQAVSSELGGERVDIILWDDNPAQLVINAMAPA 303 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +T +V+DED +++ V K+QLS AIGR GQNVRLASQLTGWT++++T +E Q++ Sbjct: 304 DITSIVVDEDTHTMDLAVEKDQLSQAIGRNGQNVRLASQLTGWTLNVMTTDEFENKNQEE 363 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 ++ + F A+ +DE IA LLVA GF+ +EE+A V E+ +IE FD+E E++ RA Sbjct: 364 SSKIVKLFTSALEIDEEIATLLVAHGFSSLEEVAYVPKEELLAIEEFDDEIVEELRNRAN 423 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 + L + +T K + E L ++ G+ ++ L E GI +MEDLA SVD+LL Sbjct: 424 DNLLTMALTSGKGLAGA-PDESLLAMDGMTEELANKLAEKGITSMEDLAEQSVDELLEID 482 Query: 475 ENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +++ ++I+ AR W Sbjct: 483 -----------------GMSEEKAGALIMKAREP--WF 501 >gi|319896984|ref|YP_004135179.1| transcription elongation protein nusa [Haemophilus influenzae F3031] gi|317432488|emb|CBY80845.1| Transcription elongation protein NusA [Haemophilus influenzae F3031] Length = 495 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 194/510 (38%), Positives = 322/510 (63%), Gaps = 20/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + +I + + + +DIRV INP+TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESAIAISTKKKFEYETDIRVSINPKTGEFDTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV+ T +I+L+ A+ DP++ +G V D + + F R+A+Q+A+QVI K+REAER Sbjct: 64 VVDEVKVPTKEITLEAAQFDDPNLQLGEYVEDQIESIAFDRIAMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + +F+++ G+I++GTVK+V ++I+DLG ++ +I R++ + REN R GDRV+ + Sbjct: 124 AKVVEQFREEEGKIVTGTVKKVSRDSIILDLGNKAEAMIAREDMLPRENFRLGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V E + Q+ ++R+ P+ +++LF +EVPEI +++++ +RD GSRAK+AV S+D Sbjct: 184 YKVNPEGKTAQLFVTRSKPEMLIELFRIEVPEIGEEMIEIRGAARDAGSRAKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ + EL E++DIV+W + A FVINA+ PA V+ +++DED Sbjct: 244 RIDPVGACVGMRGARVQVITNELGGERVDIVLWDDNPAQFVINAMAPADVSSIIVDEDNH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGWT++++T +E + Q + N+ F+ A+ Sbjct: 304 SMDIAVEADNLAQAIGRNGQNVRLATQLTGWTLNVMTTDELNAKHQAEDNKVLNLFINAL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGIDITLQ 425 +DE A +LV EGF +EE+A V ++E+ +I+G DE+ E+Q RA+ + + + Sbjct: 364 ELDEEFAQILVEEGFTSLEEIAYVPMNELTAIDGLEDEDLVEELQTRAKNAITAAAVAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + +++ V + L ++ G++ + + L E I T+E+LA VDDL E Sbjct: 424 EALKKANVEDRLLNLEGMNRHVAIKLAEKQITTLEELAEQGVDDLTDIEE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +Q +I+ AR + W +E Sbjct: 474 -------LTAEQAADLIMAAR-NICWFGEE 495 >gi|332528133|ref|ZP_08404164.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2] gi|332112704|gb|EGJ12497.1| NusA antitermination factor [Rubrivivax benzoatilyticus JA2] Length = 492 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 207/511 (40%), Positives = 326/511 (63%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK++DRDVV + ++ A + L+G DIRV ++ ETG+ FR Sbjct: 2 NREMLMLVDAISREKTVDRDVVFGAVEAALASATKKLHGGEVDIRVAVDRETGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV ++N ++ L A+++ I++ + + + + GR+ Q+AKQVI+QK+ Sbjct: 62 WHVVPNEAGLQNADAEVLLFEAQEQIADIEVDDYIEESVDSVPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F + +I GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV Sbjct: 122 RDAEREQLLNDFLARGDKIFVGTVKRLDKGDIIVESGRVEGRLKRSEMIPKENLRSGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 +++I V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAFILGVDPTQRGPQIMLSRSAPGFMVELFGQEVPEIELGLLEIKSCARDPGSRAKIAVV 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RGSRV V TEL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDRRVDPIGTCVGVRGSRVNGVTTELAGERVDIVLWSEDPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATETESVRKIF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 VEKLDVDEEVADILIAEGFTSLEEVAYVPLQEMLEIEAFDEDTVQELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ E VS++L + G+ ++ L + G+ T +DLA +VD+L+ + Sbjct: 422 EREEKVEE--VSQDLRDLEGLTPELIGKLSDGGVNTRDDLADLAVDELVEMT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + Q ++I+ AR W Sbjct: 472 ---------GVDETQARALIMKAREH--WFT 491 >gi|313199846|ref|YP_004038504.1| nusa antitermination factor [Methylovorus sp. MP688] gi|312439162|gb|ADQ83268.1| NusA antitermination factor [Methylovorus sp. MP688] Length = 488 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 332/508 (65%), Gaps = 25/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ ++V+ + + ++ A + + +D+RVEI ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKEVIFTALELALASATKKRFTEDADVRVEIERDSGNYHSFRRWQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V +++EN Q+ +R +++G +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 IVSDDDLENPAAQMYTDD--ERAEGLNLGDYYEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ RD+ I +ENLR GDRV++Y Sbjct: 122 EREQILNDFLARKEHLVTGVIKRMEKGNAIIEVGRIESVLPRDQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ SRDPG R+K+AV S+D Sbjct: 182 LSRIERTGRGPQLVLSRIAPEFLIKLFELEVPEIEEGLLEIKSASRDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMAPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+ AIGR GQNVRLAS+LTGWT++I+TE E + ++++ + Q F+ Sbjct: 302 HSMDVVVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEAEAAQKHEEEYTKTRQLFIDK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF +EE+A V I+E++ I+ FDEET E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFNTLEEIAYVPIAEMSEIDAFDEETINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E SE L ++ G+D L G+ TMEDLA +VD+L+ + Sbjct: 422 EKLEEA--SESLLTMDGMDDATAHLLASKGVSTMEDLADLAVDELMEMA----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ + +I+ AR W Sbjct: 469 ------NMDAERAKQLIMTARAP--WFA 488 >gi|222110449|ref|YP_002552713.1| nusa antitermination factor [Acidovorax ebreus TPSY] gi|221729893|gb|ACM32713.1| NusA antitermination factor [Acidovorax ebreus TPSY] Length = 494 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 201/514 (39%), Positives = 323/514 (62%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIDRDSGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L + G+ ++ L E G+ T +DLA ++D+L + Sbjct: 422 VREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDELTELTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + ++I+ AR W ++ Sbjct: 474 -----------SAEDATALIMKAREH--WFTGQE 494 >gi|217970108|ref|YP_002355342.1| transcription elongation factor NusA [Thauera sp. MZ1T] gi|217507435|gb|ACK54446.1| NusA antitermination factor [Thauera sp. MZ1T] Length = 491 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 333/509 (65%), Gaps = 23/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++ +D+V S + ++ A + +D+ V I+ ++GD + R Sbjct: 4 EILLLVDALAREKNVAKDIVFSALETALASATKKRIHDDADVVVSIDRDSGDYTSKRRWL 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ EEV N ++ + AR+ + IG + + L P+DFGR+ Q+AKQVI+QK+R+A Sbjct: 64 VMLDEEVANDEAEMGIIDARELRADVQIGDYIEEELEPIDFGRIGAQAAKQVILQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++SG++KR+E GN I+++G + V+ RD+ I RENLR GDRVK++ Sbjct: 124 EREQVLNDFLDRKEFLVSGSIKRMERGNAIIEVGRMEAVLPRDQQIPRENLRVGDRVKAF 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P+F++KLF +EVPEI +G++++KA +RD G RAK+AV S+D Sbjct: 184 LLRIDRGARGPQLVLSRTAPEFLMKLFELEVPEIEDGLLELKACARDAGLRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRV AV E+ E+IDI+VWS D A FV+ AL+PA V +V+DE+ Sbjct: 244 QRIDPIGTCVGLRGSRVTAVRNEIAGEQIDIIVWSQDPAQFVVAALQPAEVVSIVVDEES 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + L++AIGR GQNV+LAS+LTGWTI++++E+E + ++ FM+ Sbjct: 304 HAMDVVVDENNLAIAIGRSGQNVKLASELTGWTINLMSEQESAEKTAQEQQGLRALFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF+ +EE+A V +SE+ IE FDE+T E++ RAR L I + Sbjct: 364 LDVDEEVADILIEEGFSSLEEVAYVPLSEMLEIEAFDEDTVNELRNRARNVLLTEAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +++ VS++L + G+D + L + GI+T +DLA +VD+L+ + Sbjct: 424 EQLE--KVSDDLLGLEGMDKSLAATLAQQGIRTRDDLADLAVDELVEMA----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ +++I AR W E+ Sbjct: 471 ------GIDEERAKALISVARAH--WFEE 491 >gi|332290219|ref|YP_004421071.1| transcription elongation factor NusA [Gallibacterium anatis UMN179] gi|330433115|gb|AEC18174.1| transcription elongation factor NusA [Gallibacterium anatis UMN179] Length = 495 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 19/510 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + R+ + + ++ + + Y D+RV I+ +TGD FR Sbjct: 4 EILLAAEAVSNEKLLPREKIFEALESALAISTKKKYEQDIDVRVSIDQKTGDFVTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T +I+L+ A+ +P I +G + D + + F R+ +Q+ +QVI K+R+AER Sbjct: 64 VVENVTHPTKEITLEAAQIEEPEIQLGEYIEDEIESIPFDRITMQTVRQVISAKIRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +FK++ GEII+G VK+V NVI+DLGN ++ +I R++ + REN R GDRV+ + Sbjct: 124 NKVVEQFKEREGEIITGIVKKVNRENVILDLGNQAEAIILREDLLPRENFRAGDRVRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V + +GPQ+ ++R+ P+ +++LF +EVPEI G++++KA +RD G RAK+AV S D Sbjct: 184 YRVSSDPKGPQLFVTRSKPEMLIELFKIEVPEIGEGVIEIKAATRDAGVRAKIAVKSHDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAITNELDGERVDIVLWDDNPAQFVINAMAPADVVSIVVDEDKK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V L+ AIGR GQNV LAS+LTGW +++++ +E Q + + FM+++ Sbjct: 304 SMDIAVEAANLAQAIGRNGQNVNLASRLTGWKLNVMSSDELENKHQLENQKTVNLFMESL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 ++DE A+LL EGF +EE+A V E+ I+GFDE+ A E++ RA+E L I + ++ Sbjct: 364 DLDEEFANLLTEEGFRTLEEIAYVPTEELLEIDGFDEDLAEELRNRAKEVLTKIALAEEQ 423 Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + + V E L + G++ + V L E I T+E+LA VDDL Sbjct: 424 ALANIDVEEALLKLDGMNRHLAVKLAEKKITTLEELAEQGVDDLADVE------------ 471 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +Q +I+ AR + W E+ Sbjct: 472 -----GLSAEQAAQLIMAAR-NICWFGNEE 495 >gi|30248764|ref|NP_840834.1| transcription elongation factor NusA [Nitrosomonas europaea ATCC 19718] gi|30180359|emb|CAD84671.1| S1 RNA binding domain:KH domain:Type 1 KH domain [Nitrosomonas europaea ATCC 19718] Length = 490 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 323/508 (63%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG FR Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHTRDDIDVRVSIDRDTGGFHCFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V + VE+ QI++ A R+P G + D + + F R+ Q+AKQVI QK+R+A Sbjct: 64 IVADDPVEHPERQITVSEAVGRNPQAVPGEYIEDLMEDVTFDRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F D+ ++ G +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y Sbjct: 124 EREQNLNDFLDRGEYLVYGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT P F+ KLF +EVPEI GI+++KA +RDPGSRAK+AV S+D Sbjct: 184 LLRIDRSVRGPQLVLSRTSPAFLAKLFELEVPEIEEGILEIKAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DP+G CVGMRGSRVQAV +EL E++DI+ WS D ATFV+NAL PA+++ +V+DE+ Sbjct: 244 SRVDPIGTCVGMRGSRVQAVTSELAGERVDIIQWSDDQATFVVNALAPAVISSIVVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V +E L+ AIGR GQNVRLAS+LTGW ++I+TEEE +++ + FM+ Sbjct: 304 HCMDIVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTEEESQEKTEEEAASICELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I + Sbjct: 364 LDVDEDVGRILVEEGFSTLEEVAYIPIEEMLEIQEFDRETIEELRNRARNALLTDAIATE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +KI SE L ++ G+D ++ L E GI T E+LA + DDL+ + Sbjct: 424 EKIG--HASEALLALEGMDIELVRELAEKGISTQEELADLAADDLVELT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +II AR W Sbjct: 471 ------GIDFERASKIIIKAREP--WFA 490 >gi|224825864|ref|ZP_03698968.1| NusA antitermination factor [Lutiella nitroferrum 2002] gi|224602088|gb|EEG08267.1| NusA antitermination factor [Lutiella nitroferrum 2002] Length = 493 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 221/511 (43%), Positives = 334/511 (65%), Gaps = 25/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L + DA+A EKS+ +DVV + + ++ A + + DIRVEI+ TG FR Sbjct: 4 EILLLVDALASEKSVSKDVVFTALELALASATKKKFNQDDVDIRVEIDRHTGQYHTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ +E +I L AR+RDPSI++G V+ +P+ ++FGR+ Q+AKQVI+QK+R+ Sbjct: 64 TVVEDDMLEFDDKEIELADARERDPSIEVGAVIEEPMEAVEFGRIGAQAAKQVILQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ EF + ++SGTVKR+E GN I++ G + V+ R++ I +ENLR GDRVK+ Sbjct: 124 AEREQLLSEFLQRREHLVSGTVKRIERGNAIIECGKLEAVLPREQMIPKENLRVGDRVKA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R RGPQ++LSRT +F++KLF +EVPEI G++++K +RDPG RAK+AV ++ Sbjct: 184 YLMRIDRLGRGPQLVLSRTSREFLIKLFELEVPEIEEGLLEIKEAARDPGLRAKIAVKAN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP G C+GMRGSRVQ+V EL E++DIV+W+P+ A FVINAL PA V ++++DED Sbjct: 244 DPRIDPQGTCIGMRGSRVQSVTQELAGERVDIVLWAPEPAQFVINALSPAEVNRIMIDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V ++QL+LAIGR GQNVRLA++LTGW ++I+T E Q++ + FM+ Sbjct: 304 NHAMDVVVEEDQLALAIGRSGQNVRLAAELTGWYLNIMTVTEAEEKHQEEDAALRETFMK 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE A LV EGFA +EE+A V I+E+ IEGF+EE E++ RAR+ L + I Sbjct: 364 HLGVDEATAMTLVQEGFATLEEVAYVPIAEMLEIEGFEEEQVNELRSRARDALLTLAIAS 423 Query: 425 QKKIRELGVSEELCSIPGI-DSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++K+ VS++L I G+ D+ + L ENG+ T ++LA +VDDL+ + Sbjct: 424 EEKVE--SVSDDLKGIEGLEDADLVRKLAENGVTTRDELADLAVDDLVDMT--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G + ++I+ AR W + Sbjct: 473 --------GMEAEAARAIIMKAREH--WFAQ 493 >gi|229592637|ref|YP_002874756.1| transcription elongation factor NusA [Pseudomonas fluorescens SBW25] gi|229364503|emb|CAY52353.1| transcription termination factor [Pseudomonas fluorescens SBW25] Length = 493 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 319/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE ++++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEEADLDDPAIETWPSKVAETHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+T E++ RA++ L I Sbjct: 364 ELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|330969650|gb|EGH69716.1| transcription elongation factor NusA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 493 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKVAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|253995583|ref|YP_003047647.1| transcription elongation factor NusA [Methylotenera mobilis JLW8] gi|253982262|gb|ACT47120.1| NusA antitermination factor [Methylotenera mobilis JLW8] Length = 488 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 205/507 (40%), Positives = 334/507 (65%), Gaps = 25/507 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++D+ V+ + + ++ A + + +D+RV I+ E+G+ FR + Sbjct: 4 EILLLVDALAHEKNVDKSVIFTALELALASATKKKHHDDADVRVAIDRESGEYQTFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+ +EN QI + +R + IG +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 YVDYDLLENSAYQIDEED--ERSKGLTIGDYYEEPLENLEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++++G +KR+E GN I+++G + ++ R++ I +ENLR GDRV++Y Sbjct: 122 EREQILQDFLARDEKLVTGVIKRMEKGNAIIEVGRIESLLPREQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F+V+LF +EVPEI G++++++ +RDPG R+K+AV S+D Sbjct: 182 LLRIERSGRGPQLILSRIIPEFLVRLFELEVPEIEEGLLEIRSAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMEPAQFVINAMSPAEVSSIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +EQL+LAIGR GQNVRLAS+LTGWT++I+T ++ + Q+++ +Q FM+ Sbjct: 302 HSMDVVVEEEQLALAIGRSGQNVRLASELTGWTLNILTVDQAAQKNQEEYAGVSQLFMEK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDEEVAEILVQEGFSTLEEIAYVPLAEMNQIEAFDEDTVEELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E +L ++ G+D L GI TM+DLA ++D+L+ + Sbjct: 422 EKVEEAAE--DLLTLEGMDDATAHQLAAKGISTMDDLAELAIDELVELT----------- 468 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 +++ +++I+ AR W Sbjct: 469 ------NMDEERAKTLIMTARAP--WF 487 >gi|330950306|gb|EGH50566.1| transcription elongation factor NusA [Pseudomonas syringae Cit 7] Length = 493 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 323/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ + ++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAHEFAVDQAQAKKPGAVAGDLIEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + V+E +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELQVEEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDCLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|28871625|ref|NP_794244.1| N utilization substance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|213966648|ref|ZP_03394799.1| N utilization substance protein A [Pseudomonas syringae pv. tomato T1] gi|301383158|ref|ZP_07231576.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato Max13] gi|302063407|ref|ZP_07254948.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato K40] gi|302133780|ref|ZP_07259770.1| transcription elongation factor NusA [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854877|gb|AAO57939.1| N utilization substance protein A [Pseudomonas syringae pv. tomato str. DC3000] gi|213928498|gb|EEB62042.1| N utilization substance protein A [Pseudomonas syringae pv. tomato T1] gi|330877234|gb|EGH11383.1| transcription elongation factor NusA [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016647|gb|EGH96703.1| transcription elongation factor NusA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 493 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|77457005|ref|YP_346510.1| transcription elongation factor NusA [Pseudomonas fluorescens Pf0-1] gi|77381008|gb|ABA72521.1| transcription termination factor [Pseudomonas fluorescens Pf0-1] Length = 493 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 317/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGSYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE ++++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEENDLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|54307814|ref|YP_128834.1| transcription elongation factor NusA [Photobacterium profundum SS9] gi|46912237|emb|CAG19032.1| putative transcription pausing L factor [Photobacterium profundum SS9] Length = 495 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 196/511 (38%), Positives = 317/511 (62%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+RV I+ +TG ++ FR Sbjct: 2 NKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAIDRKTGQVATFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+EV T +++++ A+ D +I++GG V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER++ +F D GE+I+G VK+V VI+DLGN+ + VI+RD+ + REN R GDR++ Sbjct: 122 EREQIVEQFMDNEGELITGIVKKVNRDAVIIDLGNNAEAVIQRDDQLPRENFRSGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR E RG Q+ ++R+ + +++LF +EVPEI ++++ +RDPGSRAK+AV ++ Sbjct: 182 LLYAVRPEARGFQLFMTRSKAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W ++A +VINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V K+ L+ AIGR GQN+RLASQLTGW ++++T E+ +++ F + Sbjct: 302 SHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHKEEAQVSIDTFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE A LLV EGF +EE+A V +SE+ +EG DE+ E++ A+E L + + Sbjct: 362 YLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDEDAINELRKCAKEALTTLALAQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + + +L + G++ ++ L GI T+EDLA DDLL E Sbjct: 422 EESFEGVEPAADLLGLDGLERELAFRLAAKGICTLEDLADQGTDDLLDLEE--------- 472 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 + + +I+ AR + W E Sbjct: 473 --------MGEAKAGELIMAAR-NICWFSDE 494 >gi|66047408|ref|YP_237249.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae B728a] gi|289676023|ref|ZP_06496913.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae FF5] gi|302185431|ref|ZP_07262104.1| transcription elongation factor NusA [Pseudomonas syringae pv. syringae 642] gi|63258115|gb|AAY39211.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Pseudomonas syringae pv. syringae B728a] gi|330937945|gb|EGH41732.1| transcription elongation factor NusA [Pseudomonas syringae pv. pisi str. 1704B] Length = 493 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|89900917|ref|YP_523388.1| NusA antitermination factor [Rhodoferax ferrireducens T118] gi|89345654|gb|ABD69857.1| NusA antitermination factor [Rhodoferax ferrireducens T118] Length = 498 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 194/518 (37%), Positives = 320/518 (61%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +A++ EK+++ DVV + ++ +A R +Y DIRV ++ ++G+ FR Sbjct: 2 NREMLMLVEAISREKNVELDVVFGAVEAALAQATRKIYPGDVDIRVALDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A+++ P I++ + + + + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEETVESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + I GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDNIFVGTVKRMDKGDLIVESGRVEGRLRRTEMIPKENLRVGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDVGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINILDAAESAQKQASETDSGRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA LL+AEGF +E++A V + E+ IE FDE+TA E++ RA++ L ++I Sbjct: 362 MEHLDVDEEIADLLIAEGFTSLEQVAYVPLEEMLEIESFDEDTANELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ ++ VS +L + G+ ++ L +G+ ++DLA +VD+L + Sbjct: 422 AHEESVQA--VSLDLRDLQGLTPELIAKLATSGVNNLDDLADLAVDELTEITGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 D +++I+ AR W + + E Sbjct: 474 -----------SADDAKTLIMKAREH--WFTNDAASQE 498 >gi|88812961|ref|ZP_01128204.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231] gi|88789739|gb|EAR20863.1| transcription elongation factor NusA [Nitrococcus mobilis Nb-231] Length = 500 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 201/511 (39%), Positives = 319/511 (62%), Gaps = 23/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA++ EK + ++V+ + ++ A R + D RV +N TG+ FR Sbjct: 4 EVLLVVDAISNEKGVSKEVIFEAVEAALASATRKRHPEDIDARVAVNRTTGEYETFRRWL 63 Query: 68 VVEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV++ E+ +I+L AR ++P+I+ G + P+ ++FGR+A Q+AKQVI+QKVRE Sbjct: 64 VVDDAESVQVPQREIALAEARAQEPTIEAGQYIEQPMESVEFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + +KD+ GE+++G VKRVE G+V +DLG + + I R+E I RE +RPGDR++ Sbjct: 124 AERAKVITAYKDRQGELMTGIVKRVERGHVYLDLGGNAEAFIAREEMIPREAVRPGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++ ++ E RGPQ+++SRT P+F+++LF +EVPE+ ++Q+ +RD G RAK+AV + Sbjct: 184 GWLREICTEARGPQLVVSRTAPEFLIELFKLEVPEVGQDLLQLMGAARDAGQRAKIAVRA 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D+ IDPVGACVGMRGSRVQAV EL E+IDI++W + A +VINA+ PA V +++DE Sbjct: 244 LDARIDPVGACVGMRGSRVQAVSNELAGERIDIILWDENPAQYVINAMAPAEVESIIVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +++ V +EQLS AIGR GQNVRLA +LTGW ++++T EE + + +E + F+ Sbjct: 304 DRHSMDIAVSQEQLSQAIGRGGQNVRLAGELTGWELNVMTSEEAQAKSEAEADELIELFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++VDE +A +L EGF+ VEE+A V ++E IE FDE+ ++ RAR+ L ++ Sbjct: 364 SSLDVDEEVAEILAREGFSSVEEIAYVPVAEFLEIEEFDEDIVELLRNRARDALLTRELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + EL ++ G+D + G+ T+EDLA SVD+L+ Sbjct: 424 EVEQDSPAKPTPELLALEGMDEALAWQFAARGVVTVEDLADQSVDELMEIE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G + + ++I+ AR W Sbjct: 475 --------GMDEQRAAALIMKAREP--WFAD 495 >gi|223042074|ref|ZP_03612250.1| transcription elongation protein NusA [Actinobacillus minor 202] gi|223017149|gb|EEF15585.1| transcription elongation protein NusA [Actinobacillus minor 202] Length = 498 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 190/513 (37%), Positives = 306/513 (59%), Gaps = 25/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG FR Sbjct: 4 EILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSELDIDVRVVVDRKTGSFQTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V N T +ISL+ A+ +P I +G VV D + ++FGRVA+Q+ QV+ K+REAE+ Sbjct: 64 VVEDVHNMTREISLEAAQFENPDIQLGDVVEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181 + EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPGDR Sbjct: 124 GKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIAREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+AV Sbjct: 184 VRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ + + Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSITI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE + Q++ + Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELAKKNQEEDGKVINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGI 420 A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ + Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAITKQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L E Sbjct: 424 ALAEEEALKQAHIDEQLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDELADIEE----- 478 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + +I+ AR ++ W Sbjct: 479 ------------LSAEAAGELIMAAR-QICWFS 498 >gi|254284119|ref|ZP_04959087.1| N utilization substance protein A [gamma proteobacterium NOR51-B] gi|219680322|gb|EED36671.1| N utilization substance protein A [gamma proteobacterium NOR51-B] Length = 499 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 205/517 (39%), Positives = 326/517 (63%), Gaps = 22/517 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + D++ + ++ AA+ Y SDI V+I+ ETGD R Sbjct: 2 NKEILMVAEAVSNEKGVSEDIIFEAIELALATAAKKRYDEESDIEVQIDRETGDYVTTRR 61 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + E Q + + A + + + G V + + +DFGR+A Q+AKQVI+Q+VR Sbjct: 62 WLVVPDSELALLGTQFTTEEAIEVNAELKPGDVHEEVVDNVDFGRIAAQTAKQVIVQRVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 +AER + +++ +VGE+++GTVK+V NVIVDLG + +G++ R E + RE R DRV Sbjct: 122 DAERAQIVEQYQSRVGELLAGTVKKVTRDNVIVDLGGNAEGLLPRTELVGRETFRINDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + ++ E RGPQ++LSR + +++LF +EVPEI G++Q++A +RDPGSRAK+AV Sbjct: 182 RAILTEINTESRGPQLILSRACKEMLIELFKIEVPEIAEGVIQIRAAARDPGSRAKIAVK 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D IDPVGACVGMRGSRVQAV EL +E++DI++W ++A VINA+ PA V +V+D Sbjct: 242 TGDQRIDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNAAQLVINAMSPAEVESIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +EV V ++ L+ AIGR GQNVRLAS LT WTI++++ ++ ++ + + + F Sbjct: 302 EDSNTMEVAVAEDNLAQAIGRGGQNVRLASDLTEWTINVMSVDDAIEKQEAEAIQVMETF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M A++VDE +A +LV EGF +EE+A V + E+ SIEGFDE+ + E++ RA++ L + I Sbjct: 362 MNALDVDEDVAGVLVEEGFTTLEEVAYVPLEEMMSIEGFDEDISEELRARAKDALLTMAI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ +E+L ++ G++ + L GI TMEDLA VDD++ Sbjct: 422 ASEEQLGANEPAEDLLAMEGMERHLAFVLASRGIVTMEDLAEQGVDDIMDIE-------- 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 +++ ++I+ AR W +E+ A Sbjct: 474 ---------DMTEERAAALIMTAREP--WFAEEESAS 499 >gi|289624601|ref|ZP_06457555.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868245|gb|EGH02954.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 493 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIHAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|330958050|gb|EGH58310.1| transcription elongation factor NusA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 493 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRMRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|240949224|ref|ZP_04753568.1| transcription elongation factor NusA [Actinobacillus minor NM305] gi|240296340|gb|EER46984.1| transcription elongation factor NusA [Actinobacillus minor NM305] Length = 498 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 191/513 (37%), Positives = 308/513 (60%), Gaps = 25/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TG+ FR Sbjct: 4 EILFAAEAVSNEKQLPKEAIFEALETALTIATKKSSDLDIDVRVSVDRKTGNFQTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV N T +ISL+ A+ DP+I +G +V D + ++FGRVA+Q+ QV+ K+REAE+ Sbjct: 64 VVEEVHNMTREISLEAAQFEDPNIQLGDIVEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181 + EF+ G+IIS TVK+V N+ ++L + VI R++ + REN RPGDR Sbjct: 124 GKIIDEFRSDEGKIISATVKKVTRDNIFLELQGKTEDIKGEAVIVREDMLPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI +++K +RDPGSRAK+AV Sbjct: 184 VRGVLYAIKPESKGPQIFLTRAKPVMLTELFKLEVPEIGEQTIEIKGAARDPGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +++ Sbjct: 244 KSNDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMAPADVSSIII 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +++ +++ V + L+ AIGR GQNVRLA+QLTGWT++++T EE Q++ + Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWTLNVMTVEELEKKNQEEDGKVINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGI 420 A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ + Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDALTAIDGLEDEDLVEELQARAKNAITKQ 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++ +++ + E+L ++ G++ I L E GI T+EDLA D+L E Sbjct: 424 ALAEEEALKQAHIDEKLLNLEGMERHIAFRLAEKGITTLEDLAEQGTDELADIEE----- 478 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + +I+ AR ++ W Sbjct: 479 ------------LSAEAAGELIMAAR-QICWFS 498 >gi|146308624|ref|YP_001189089.1| transcription elongation factor NusA [Pseudomonas mendocina ymp] gi|145576825|gb|ABP86357.1| NusA antitermination factor [Pseudomonas mendocina ymp] Length = 493 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 318/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+ Sbjct: 304 AHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ SI+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEEIVNELRARAKDRLLTKAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +++L + G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|330888659|gb|EGH21320.1| transcription elongation factor NusA [Pseudomonas syringae pv. mori str. 301020] Length = 493 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSR+K+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRSKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|71734581|ref|YP_276312.1| transcription elongation factor NusA [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482262|ref|ZP_05636303.1| transcription elongation factor NusA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289646960|ref|ZP_06478303.1| transcription elongation factor NusA [Pseudomonas syringae pv. aesculi str. 2250] gi|298488455|ref|ZP_07006486.1| Transcription termination protein NusA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71555134|gb|AAZ34345.1| N utilization substance protein A [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157080|gb|EFH98169.1| Transcription termination protein NusA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330987054|gb|EGH85157.1| transcription elongation factor NusA [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011498|gb|EGH91554.1| transcription elongation factor NusA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 493 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|330504828|ref|YP_004381697.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01] gi|328919114|gb|AEB59945.1| transcription elongation factor NusA [Pseudomonas mendocina NK-01] Length = 493 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 318/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RV IN + G FR Sbjct: 4 EVLLVVESVSNEKGVPAGVIFEALELALATATKKRFEDEVDLRVSINRQNGSYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+E E+ Q++ + + + IG V+ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDESEFEDPAYQLTEDMPQAVEAKAKIGDVLEEKVESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ I RE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G++ VKA SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIDVKAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V ++ L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + Q F+ Sbjct: 304 AHAMDIAVGEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQAETGDIMQSFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ SI+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVEEGFTSLEEIAYVPMEEMLSIDGFDEDIVNELRARAKDRLLTKAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +++L + G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPADDLLELEGMDKALALELALRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G +++ +I+ AR W E Sbjct: 467 DDLLDIDGIDEERAGKLIMAARAH--WFE 493 >gi|171058383|ref|YP_001790732.1| NusA antitermination factor [Leptothrix cholodnii SP-6] gi|170775828|gb|ACB33967.1| NusA antitermination factor [Leptothrix cholodnii SP-6] Length = 492 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 202/511 (39%), Positives = 324/511 (63%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + DA++ EK++DR+VV + ++ A + LY DIRV ++ +TG FR Sbjct: 2 NRELLMLVDAISREKNVDREVVFGAVEAALASATKKLYEGEVDIRVAVDRDTGVYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I A+++ I++ + + + + GR+ Q+AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPEAEILHFEAKEQIDDIEVDDYLEESVESVPIGRIGAQAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F + +I GTVKR++ G+++V+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREQLLNDFMSRGEKIFVGTVKRLDKGDLVVESGRVEGRLRRSELIPKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RGPQ++LSR+ P+FM++LF +EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAIIVEVDPTLRGPQIVLSRSAPEFMIELFRLEVPEIEQGLLEIKSCARDSGSRAKIAVV 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDRRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMTAEESQAKQATESDSIRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE +A +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 VDKLDVDEDVADILIAEGFTSLEEVAYVPMQEMLEIESFDEDTVHELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ E VS++L + G+++++ L + GI T +DLA +VD+L + Sbjct: 422 VNEEKVDE--VSQDLRDLEGLNAELIGKLSDGGIHTRDDLADLAVDELTEMT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + +++I+ AR W Sbjct: 472 ---------GIDDNAAKALILKAREH--WFT 491 >gi|145589410|ref|YP_001156007.1| transcription elongation factor NusA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047816|gb|ABP34443.1| NusA antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 493 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 199/510 (39%), Positives = 328/510 (64%), Gaps = 25/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +ADA+A EK++D+ +V + ++ A + Y DIRV I+ E+G+ FR Sbjct: 4 EVLMLADALAREKNVDQAIVFEALEMALASATKKRYATEDVDIRVSIDRESGEYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ +I A+++ I++G + + + + FGR+ Q+AKQVI+Q++R Sbjct: 64 LVVPDEAGLQEPDKEILQFEAKEQLSDIEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ ++ ++ ++++GTVKR + +I++ G + ++RRD+ I +ENLR GDRV+ Sbjct: 124 DAEREQILNDYLERGEKVMTGTVKRADKNGLIIESGRVEALLRRDQMIPKENLRSGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV + Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VD+ +A +L+ EGF +EE+A V +SE+ I+ FDE+T E++ RAR+ L +++ Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDEDTVNELRTRARDSLLTMELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 +++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ ++ Sbjct: 424 KEERIGE--VSQDLRSLDGMTTELIAKLADNQVHTRDDLAELAVDELVEATQ-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +++I+ AR W Sbjct: 474 ---------IDEETAKTLIMKAREH--WFT 492 >gi|239815725|ref|YP_002944635.1| NusA antitermination factor [Variovorax paradoxus S110] gi|239802302|gb|ACS19369.1| NusA antitermination factor [Variovorax paradoxus S110] Length = 494 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 201/514 (39%), Positives = 324/514 (63%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR Sbjct: 2 NREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A++ P I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEEMPDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQASETDASRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L++EGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS+ L + G+D ++ L E G+ T +DLA +VD+L + + Sbjct: 422 AKEEGVE--TVSQNLRDLEGLDPELIPKLAEAGVHTRDDLADLAVDELTEITGH------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 D +++I+ AR W ++ Sbjct: 474 -----------SADDAKALILKAREH--WFAGQE 494 >gi|94676752|ref|YP_589057.1| transcription termination factor NusA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219902|gb|ABF14061.1| transcription termination factor NusA [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 495 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 191/511 (37%), Positives = 310/511 (60%), Gaps = 19/511 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y ++R+ I+ ++GD R Sbjct: 2 NKEILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+V T +I+L+ A+ +P+ +GG + D + + F R+ Q+AKQVI+QKVR A Sbjct: 62 WLIVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRAA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+I+ G VK+V N+ +D+GN+ + +I R++ + REN R GDR++ Sbjct: 122 ERAMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y +R E RG Q+ +SRT P+ +V+LF +EVPEI ++++KAV+RDPGSRAK+AV ++ Sbjct: 182 VLYSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDIV+W + FVINA+ PA V +++DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQL+GW +++IT E + + + + F + Sbjct: 302 TQIMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E +A +L+ G + +EELA V I E+ I+ DE E++ +A++ + + IT+ Sbjct: 362 TLNINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTITM 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 Q+ ++L + ++ I L GI T+E+LA +DDLL Sbjct: 422 QENNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +Q +I+ AR K+ W + Sbjct: 472 -------GLSSEQAGELIMAAR-KICWFGDQ 494 >gi|260221430|emb|CBA29985.1| Transcription elongation protein nusA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 498 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 198/518 (38%), Positives = 322/518 (62%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVEAALAQATKKLYAGDVDIRVALDRDSGNYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A+++ I++ + +P+ + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEQIADIEVDEYIEEPVASVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFVGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIVLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV V EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNGVTNELAGERVDIVLWSEDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F Sbjct: 302 EERHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKLANETDSGRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFTSLEEVAYVPLQEMLEIESFDEDTVHELRNRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + E VS+ L + G+ ++ L + G+ T ++LA +VD+L + Sbjct: 422 AHEESVEE--VSQNLRDLEGLTPELIGKLADGGVHTRDELADLAVDELTDITGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 D+ +++I+ AR W + + E Sbjct: 474 -----------SADEAKALIMKAREH--WFTNDGASQE 498 >gi|312963084|ref|ZP_07777569.1| N utilization substance protein A [Pseudomonas fluorescens WH6] gi|311282595|gb|EFQ61191.1| N utilization substance protein A [Pseudomonas fluorescens WH6] Length = 493 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 317/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE ++++ + P +G VV + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEEDDLDDPAIETWPSKVAQTHPGAQVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|33152524|ref|NP_873877.1| transcription elongation factor NusA [Haemophilus ducreyi 35000HP] gi|33148747|gb|AAP96266.1| transcription termination-antitermination factor nusA, N utilization substance protein A [Haemophilus ducreyi 35000HP] Length = 493 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 194/508 (38%), Positives = 318/508 (62%), Gaps = 20/508 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ + + G DIRV IN +TG+ FR Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKGIDIDIRVVINRKTGEFQTFRRWL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+V N T +ISL A+ DP++ +G V D + + F R+ +Q+A+QVI K+REAER Sbjct: 64 IVEQVHNMTREISLAAAQYEDPNVQLGDFVEDEIESIPFDRITMQTARQVISTKIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 ++ +F+ ++ I++ TVK+V +I+DLGN ++ VI R++ + REN RPGDR++ + Sbjct: 124 NKVIEQFRTQLNCIVTATVKKVNREQIILDLGNQAEAVIIREDMLPRENFRPGDRIRGVL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y ++ E +GPQ+ ++R P + LF +EVPEI ++++K SRD GSR+K+AV S+D Sbjct: 184 YAIKPESKGPQLFVTRAKPVMLEVLFKLEVPEIGEEVIEIKGASRDAGSRSKIAVKSNDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+DED Sbjct: 244 RIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMSPAEVSHIVVDEDKH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +++ V + L+ AIGR GQNVRLA+QLTGW+++++T E+ + Q + N+ F+ ++ Sbjct: 304 AMDIAVETKNLAQAIGRNGQNVRLATQLTGWSLNVMTTEDLNEKHQAEDNKIIDLFVTSL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE-TAVEIQGRAREYLEGIDITLQ 425 +DE AHLLV EGF+ +EE+A + ++E+ I+G D+E A E+Q RA+ + + + Sbjct: 364 QIDEEFAHLLVDEGFSSLEEIAFIAVNELVDIDGIDDENLAEELQTRAKAAITEKALAEE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + ++ + + L ++ G++ I L E GI T+E+LA +DDL E Sbjct: 424 EALKRADIEDRLLNLDGLERHIAFKLAEKGIVTLEELAEQGIDDLADIQE---------- 473 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +I++AR ++ W Sbjct: 474 -------LSAEKAGELIMNAR-QICWFS 493 >gi|330807482|ref|YP_004351944.1| transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375590|gb|AEA66940.1| Putative transcription elongation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 493 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 318/509 (62%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + +V+ + ++ A + + D+RVEIN TG FR Sbjct: 4 EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE ++++ + + P +G VV + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G R+++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F+ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFID 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|320322529|gb|EFW78622.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. B076] Length = 493 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|320330002|gb|EFW85989.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. race 4] gi|330875221|gb|EGH09370.1| transcription elongation factor NusA [Pseudomonas syringae pv. glycinea str. race 4] Length = 493 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 208/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQVKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRIGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDEE E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLGGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|121594900|ref|YP_986796.1| NusA antitermination factor [Acidovorax sp. JS42] gi|120606980|gb|ABM42720.1| NusA antitermination factor [Acidovorax sp. JS42] Length = 494 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 201/514 (39%), Positives = 322/514 (62%), Gaps = 24/514 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVVL + ++ +A + LY DIRV I ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDVVLGAVESALAQATKKLYQGEVDIRVSIERDSGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L AR+R I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEELLMDARERVADIEVGEYIEEAVESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRNEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA VT +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSDDPAQFVIGALAPANVTSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDAAESAQKQANETDAARRLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGFA +EE+A V + E+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIANILIEEGFASLEEVAYVPLQEMLEIESFDEDTVNELRARAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L + G+ ++ L E G+ T +DLA ++D+L + Sbjct: 422 VREESVE--SVSQDLRDLEGLTPELIAKLAEGGVHTRDDLADLAIDELTELTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 + ++I+ AR W ++ Sbjct: 474 -----------SAEDATALIMKAREH--WFTGQE 494 >gi|124267111|ref|YP_001021115.1| NusA antitermination factor [Methylibium petroleiphilum PM1] gi|124259886|gb|ABM94880.1| NusA antitermination factor [Methylibium petroleiphilum PM1] Length = 492 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 210/511 (41%), Positives = 327/511 (63%), Gaps = 24/511 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL DA+A EKS++RDVV + ++ A++ L+G DIRV ++ +TG+ FR Sbjct: 2 NRDLLDFVDAIAREKSVERDVVFEAVEAALASASKKLHGGEVDIRVSVDRDTGEYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L ARDR I+ G + + + + GR+ Q+AKQVI+QKV Sbjct: 62 WLVVPDSAGLQNADAEELLTDARDRIEDIEEGDYIEEAIESVSIGRIGAQAAKQVILQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ +F + +I GTVKR++ G+++V+ G +G ++R E I++ENLR GDRV Sbjct: 122 RDAEREQLLNDFLSRGDKIFVGTVKRLDKGDLVVESGRVEGRLKRSELIAKENLRTGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++YI +V QRGPQ++LSR+ P FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAYITEVDTTQRGPQIMLSRSAPGFMVELFRHEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RGSRV AV EL E++DIV+WS D A FVI AL PA V +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGSRVNAVTNELAGERVDIVLWSADPAQFVIGALAPANVQSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I++ EE + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWRINIMSAEESQDKQATESESIRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ ++VD +A +L+AEGF +EE+A V + E+ +E FDE+T E++ RA++ L ++I Sbjct: 362 VEKLDVDAEVADILIAEGFTSLEEVAYVPLQEMLEMESFDEDTVHELRTRAKDALLTMEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K+ VS++L + G+D+++ L E GI T +DLA +VD+L + Sbjct: 422 AQEEKLE--SVSQDLRDLEGLDAELIARLAEGGIHTRDDLADLAVDELTELT-------- 471 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +Q +++I+ AR W Sbjct: 472 ---------GVADEQAKALIMKAREH--WFT 491 >gi|237798562|ref|ZP_04587023.1| transcription elongation factor NusA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021415|gb|EGI01472.1| transcription elongation factor NusA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 493 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKRPGAVAGELIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|330895306|gb|EGH27644.1| transcription elongation factor NusA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 493 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 206/509 (40%), Positives = 323/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ A GR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQASGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|90416134|ref|ZP_01224066.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2207] gi|90331859|gb|EAS47073.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2207] Length = 497 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 203/511 (39%), Positives = 325/511 (63%), Gaps = 22/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK +D++V+ + ++ A + Y ++IRV I+ ETGD FR + Sbjct: 4 EILMVAEAVSNEKGVDQEVIFQAIEQALSTATKKRYDEGANIRVVIDRETGDYDSFRWWD 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + Q + + A ++DP++ +G + + + FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVADDVMAELGTQFTTEEAHEKDPTLAVGDTFEETVENIAFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER+ F +++GE+++GTVK+V ++IVD G++ +G++ R+E + RE R DR + Sbjct: 124 ERELIISRFVNRIGEMLNGTVKKVTRDHIIVDFGDNAEGLLPREELVGREIFRINDRTRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +R + RGPQ+L+SR + +V+LFH+EVPEI GI+++K +RDPG RAK+AV S Sbjct: 184 ILTSIRDDTRGPQLLVSRAASEMLVQLFHIEVPEISEGIIEIKGAARDPGQRAKIAVKSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ IDPVGACVGMRG+RVQAV +L DE+IDI++W + A VINA+ PA V +V+DED Sbjct: 244 DARIDPVGACVGMRGARVQAVSNDLDDERIDIILWDDNPAQLVINAMAPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E L+ AIG+ GQNVRLAS+LTGWTI+++T ++ +Q++ + M Sbjct: 304 SHSMDVAVSEENLAQAIGKGGQNVRLASELTGWTINVMTMDQAQEKQQEESLNVVENLMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+++DE +A +LV EGF +EE+A V + E+ IEGFDE A E++ RA++ L + + Sbjct: 364 ALDIDEDVAIVLVEEGFTSLEEVAYVPLEEMIDIEGFDEGIATELRARAKDALLTMALAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L ++ G++ + L GI TMEDLA +VDDL+ Sbjct: 424 EEQLANAQPAEDLLTMDGMNDALANTLAGKGIITMEDLAEQAVDDLMEVD---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR W + Sbjct: 474 -------GMDEETAAALIMTARAP--WFVDQ 495 >gi|332528893|ref|ZP_08404863.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624] gi|332041650|gb|EGI78006.1| NusA antitermination factor [Hylemonella gracilis ATCC 19624] Length = 511 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 198/528 (37%), Positives = 325/528 (61%), Gaps = 28/528 (5%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ELL + +A++ EK+++RDVV + ++ +A + LY DIRV ++ +TG Sbjct: 1 MSSIKNSELLMLVEAISREKNVERDVVFGAVEAALAQATKKLYEGDVDIRVAVDRDTGLY 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 FR VV + ++ +I L A+++ P I++ + + + + GR+ +AKQV Sbjct: 61 ETFRRWHVVPDEAGLQLPDQEILLFEAKEQIPDIEVDEYIEEAVESVPIGRIGAMAAKQV 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 I+QK+R+AER+ +F + +I G+VKR++ G++IV+ G +G ++R+E I +EN R Sbjct: 121 ILQKIRDAEREMLLNDFMSRGEKIFVGSVKRMDKGDLIVESGRVEGRLKRNEMIPKENFR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRV++ I +V EQRGP +LLSR+ P+FM++LF EVPEI G++++K+ +RD GSRA Sbjct: 181 AGDRVRAMIMEVNTEQRGPAILLSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ Sbjct: 241 KIAVLSHDKRVDPIGTCVGVRGARVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DE+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Sbjct: 301 SIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADETTT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM+ ++VDE IA +L+ EGF +EE+A V + E+ IE FDE+T E++ RA++ L Sbjct: 361 LRKLFMEKLDVDEEIADILITEGFTSLEEVAYVPLQEMLEIESFDEDTVNELRARAKDAL 420 Query: 418 EGIDITLQKKIRELGVSEELCSI----PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++I ++ + E VS++L + + + + L + G+ T++DLA ++D+L Sbjct: 421 LTLEIAREESVDE--VSQDLRDLQFQGKPLSADVIAKLADGGVHTLDDLADLAIDELTVI 478 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEE 521 + + ++ +++I+ AR W E Sbjct: 479 TGH-----------------SEEDAKALILKAREH--WFTDEPATAAS 507 >gi|330963974|gb|EGH64234.1| transcription elongation factor NusA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 493 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 207/509 (40%), Positives = 324/509 (63%), Gaps = 22/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELVGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L S+ G+D + + L G+ T EDLA S Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVVTREDLAEQS-----------------I 466 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D L G D+ +I+ AR W E Sbjct: 467 DDLLDIDGIDDDRAGKLIMAARAH--WFE 493 >gi|121609702|ref|YP_997509.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121554342|gb|ABM58491.1| NusA antitermination factor [Verminephrobacter eiseniae EF01-2] Length = 494 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 198/510 (38%), Positives = 323/510 (63%), Gaps = 24/510 (4%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LELL + DA++ EK+++RDVVL + ++ +A + LY DIRV ++ ++G FR Sbjct: 3 LELLMLIDAISREKNVERDVVLDAVESALAQATKKLYQGEVDIRVAVDRKSGGHETFRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++N + L A++R I++G + + + + GR+ +AKQVI+QK+R Sbjct: 63 LVVPDEAGLQNPDAEELLMDAKERIADIEVGEYIEETVDSVPIGRIGAMAAKQVILQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER+ +F + +I +GTVKR++ G++IV+ G +G +RR E I +ENLR GDRV+ Sbjct: 123 DAEREMLLNDFMSRGEKIFTGTVKRMDKGDIIVESGRVEGRLRRSELIPKENLRSGDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I +V RG ++LSR+ P+FM++LF EVPEI ++++K+ +RDPGSRAK+AV S Sbjct: 183 AMIMEVDLSLRGAPIILSRSAPEFMIELFRQEVPEIEQSLLEIKSCARDPGSRAKIAVLS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 243 HDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLA+ LTGW I+I+ E + + K+ + + FM Sbjct: 303 EKHAMDVVVDEENLAIAIGRGGQNVRLAADLTGWKINIMDAAESAQKQAKESDTARRLFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VDE IA +L+AEGF +EE+A V + E+ I+ FDE+T E++ RA++ L ++I Sbjct: 363 EKLDVDEEIADILIAEGFNSLEEVAYVPLQEMLEIDSFDEDTVNELRARAKDALLTMEIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + E VS++L + G+ + L + G+ T +DLA ++D+L + Sbjct: 423 REESVEE--VSQDLRDLGGLSPALIAQLAKGGVHTRDDLADLAIDELTDLTGQ------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +++ +++I+ AR W Sbjct: 474 ----------SEEEAKALIMKAREH--WFA 491 >gi|88797622|ref|ZP_01113211.1| N utilization substance protein A [Reinekea sp. MED297] gi|88779794|gb|EAR10980.1| N utilization substance protein A [Reinekea sp. MED297] Length = 503 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 200/513 (38%), Positives = 322/513 (62%), Gaps = 24/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM--SDIRVEINPETGDISLFRL 65 E+L + DAVA EK + RDV+ M ++ AA+ D+ V I+ +TG+ FR Sbjct: 10 EILLVVDAVANEKGVSRDVIFDAMELALATAAKKRLDDEGEPDVYVVIDRKTGEYETFRR 69 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EV+ + V Q + + A + D ++ G V + FGR++ Q+AKQ+I+QKVR Sbjct: 70 WEVMGDDVVPELGSQWTTEEAHEVDTNLKPGDVYEVQIENEGFGRISAQAAKQIIVQKVR 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 +AER R ++++VGE+++GTVK+V +I+DLGN+ + V+ RD+ I RE R DRV Sbjct: 130 DAERARIVDNYRERVGEMVTGTVKKVTRDALIIDLGNNAEAVLPRDQMIGREAFRLADRV 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + +++ E RGPQ++LSRT + +V+LF +EVPEI ++++++ +RDPGSRAK+AV Sbjct: 190 RAVLQEIKSEGRGPQLVLSRTSNEMLVELFRIEVPEIQEELIEIRSCARDPGSRAKIAVK 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+D Sbjct: 250 TNDGRIDPVGACVGMRGSRVQAVSNELGNERVDIILWDDNPAQLVINAMAPAEVASIVMD 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +EV V ++ L++AIGR GQNVRLA+ LTGW I+++TE+E ++++ + F Sbjct: 310 EDTNTMEVAVAEDNLAIAIGRNGQNVRLAADLTGWIINVMTEDEAGARQEQEAGQLVSHF 369 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + VD+ +A +LV EGF +EE+A V I+E+ I+GF+E+ E++ RA++ L ++ Sbjct: 370 VEKLGVDDELAMILVEEGFTTLEEVAYVPINEMLDIDGFEEDLVNELRQRAKDELLTQEL 429 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++++ E+L + G+ + L NG+ +MED+A S+D+L+ +S Sbjct: 430 ATEERLDSAEPQEDLLGLDGMTDHLARVLASNGVVSMEDVAELSIDELMEFS-------- 481 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G +D +I+ AR W E E Sbjct: 482 ---------GLDEDASGKLIMAARAP--WFENE 503 >gi|254482493|ref|ZP_05095732.1| NusA N-terminal domain family [marine gamma proteobacterium HTCC2148] gi|214037184|gb|EEB77852.1| NusA N-terminal domain family [marine gamma proteobacterium HTCC2148] Length = 497 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 203/513 (39%), Positives = 321/513 (62%), Gaps = 22/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + ++ + ++ A + Y SDI V I+ TGD R Sbjct: 4 EILLVAEAVSNEKGVAESIIFEAIELALATATKKRYDEESDIEVTIDRSTGDYVTKRRWL 63 Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E Q + + A ++D S+ G + + + + FGR+A Q+AKQVI+Q+VR+A Sbjct: 64 VVPDDELALLGTQFTTEEAAEQDTSLQPGDIYEEVIDNVGFGRIAAQTAKQVIVQRVRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER++ ++ +VGE+++GTVK+V NVIVDLGN+ +G++ R E + RE R DRV++ Sbjct: 124 EREQVVEQYMGRVGELVAGTVKKVTRDNVIVDLGNNAEGLLPRSELVGRETFRVNDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ E RGPQ++LSR P+ +++LF +EVPEI ++Q++A +RDPGSRAK+AV ++ Sbjct: 184 ILKEISTEARGPQLILSRACPEMLIELFKIEVPEISEEVIQIRAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL +E++DIV+W + A VINA+ PA V +V+DED Sbjct: 244 DQRIDPVGACVGMRGSRVQAVSNELDNERVDIVLWDDNPAQLVINAMAPAEVESIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 G ++V V +E L+ AIGR GQNVRLA++LT WTI++++ EE + + + E F + Sbjct: 304 SGTMDVAVSEENLAQAIGRSGQNVRLAAELTEWTINVMSLEEAADKHEAEAGEVIGVFCK 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ A E++ RA++ L I Sbjct: 364 ALDVDEDVAEILVEEGFTTLEEVAYVPLEEMTAIDGFDEDIAEELRARAKDALLTQAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ +E+L ++ G+D + L I TMEDLA +V+DL+ Sbjct: 424 EEQLGANEPAEDLLTMEGMDRHLAYILSSREIVTMEDLAEQAVEDLMDIE---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 +++ +I+ AR W + + Sbjct: 474 -------DMTEERAGELIMTARAP--WFAEAEE 497 >gi|78066110|ref|YP_368879.1| transcription elongation factor NusA [Burkholderia sp. 383] gi|77966855|gb|ABB08235.1| NusA antitermination factor [Burkholderia sp. 383] Length = 491 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 215/508 (42%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L ARD++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEARDQNPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDLT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|254252537|ref|ZP_04945855.1| Transcription elongation factor [Burkholderia dolosa AUO158] gi|124895146|gb|EAY69026.1| Transcription elongation factor [Burkholderia dolosa AUO158] Length = 491 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRTLFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|161524929|ref|YP_001579941.1| transcription elongation factor NusA [Burkholderia multivorans ATCC 17616] gi|189350321|ref|YP_001945949.1| transcription elongation factor NusA [Burkholderia multivorans ATCC 17616] gi|221197756|ref|ZP_03570802.1| transcription termination factor NusA [Burkholderia multivorans CGD2M] gi|221204686|ref|ZP_03577703.1| transcription termination factor NusA [Burkholderia multivorans CGD2] gi|160342358|gb|ABX15444.1| NusA antitermination factor [Burkholderia multivorans ATCC 17616] gi|189334343|dbj|BAG43413.1| N utilization substance protein A [Burkholderia multivorans ATCC 17616] gi|221175543|gb|EEE07973.1| transcription termination factor NusA [Burkholderia multivorans CGD2] gi|221181688|gb|EEE14089.1| transcription termination factor NusA [Burkholderia multivorans CGD2M] Length = 491 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|221214880|ref|ZP_03587848.1| transcription termination factor NusA [Burkholderia multivorans CGD1] gi|221165107|gb|EED97585.1| transcription termination factor NusA [Burkholderia multivorans CGD1] Length = 491 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMT 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|107022573|ref|YP_620900.1| transcription elongation factor NusA [Burkholderia cenocepacia AU 1054] gi|116689521|ref|YP_835144.1| transcription elongation factor NusA [Burkholderia cenocepacia HI2424] gi|254245586|ref|ZP_04938907.1| Transcription elongation factor [Burkholderia cenocepacia PC184] gi|105892762|gb|ABF75927.1| NusA antitermination factor [Burkholderia cenocepacia AU 1054] gi|116647610|gb|ABK08251.1| NusA antitermination factor [Burkholderia cenocepacia HI2424] gi|124870362|gb|EAY62078.1| Transcription elongation factor [Burkholderia cenocepacia PC184] Length = 491 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|319793511|ref|YP_004155151.1| nusa antitermination factor [Variovorax paradoxus EPS] gi|315595974|gb|ADU37040.1| NusA antitermination factor [Variovorax paradoxus EPS] Length = 497 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 201/515 (39%), Positives = 324/515 (62%), Gaps = 23/515 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DA++ EK+++RDVV + ++ +A + L+ DIRV ++ ++GD FR Sbjct: 2 NREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVAVDRDSGDYETFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++ +I L A++ I++G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVDSVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ +F + +I GTVKR++ G++IV+ G +G +RR E I++ENLR GDRV Sbjct: 122 RDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FM++LF EVPEI G++++K+ +RDPGSRAK+AV Sbjct: 182 RAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS LTGW I+I+ E + + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA +L+AEGF +EE+A V ISE+ IE FDE+T E++ RA++ L ++I Sbjct: 362 MEKLDVDEEIADILIAEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTMEI 421 Query: 423 TLQKKIR-ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++ + + VS+ L + G+D ++ L E G+ T +DLA +VD+L + + Sbjct: 422 AKEEGVETQSSVSQNLRDLEGLDPELIPKLAEAGVNTRDDLADLAVDELTEITGH----- 476 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 D +++I+ AR W ++ Sbjct: 477 ------------SADDAKALILKAREH--WFAGQE 497 >gi|170732825|ref|YP_001764772.1| transcription elongation factor NusA [Burkholderia cenocepacia MC0-3] gi|169816067|gb|ACA90650.1| NusA antitermination factor [Burkholderia cenocepacia MC0-3] Length = 491 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|82702986|ref|YP_412552.1| transcription elongation factor NusA [Nitrosospira multiformis ATCC 25196] gi|82411051|gb|ABB75160.1| NusA antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 495 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 209/513 (40%), Positives = 331/513 (64%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++++++V + + ++ A + + +D+RV I+ +TGD R + Sbjct: 4 EVLLLVDALAREKNVEKNIVFAALELALASATKKRFNEDADVRVSIDHQTGDYQSLRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ QISL A ++P I + + + L P++FGR+ Q+AKQVI QK+R+A Sbjct: 64 VVADDAVEDPARQISLSEAFRQNPEIQLDEYIEEILEPVEFGRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ +++GT+KR+E GN I++ G + V+ RD+ I +ENLR GDRV++Y Sbjct: 124 EREQILNDFLERKEYMVTGTIKRMERGNAIIESGRVEAVLPRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ + R RGPQ++LSR P+F++KLF +EVPEI G++++K +RDPGSRAK+AV S+D Sbjct: 184 LHRIDRTTRGPQLILSRIVPEFLIKLFELEVPEIEEGLLEIKVAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+G CVGMRGSRVQAV EL E++DI++WS D ATFVINAL PA ++ +++DE+ Sbjct: 244 QRVDPIGTCVGMRGSRVQAVTGELAGERVDIILWSDDPATFVINALAPAEISSILVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++F+ FM+ Sbjct: 304 HSMDIVVDEGNLAQAIGRGGQNVRLASELTGWELNIMTMEESQAKNEEEFSVLRHLFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L EGF +EE+A V +SE+ IE FDE+T E++ RAR L I + Sbjct: 364 LDVDEEVADILAQEGFTTLEEVAYVPLSEMMEIEAFDEQTVNELRNRARNALLTEAIVSE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ ++E+L ++ G+DS+ L G+ T EDLA +VDDL+ E Sbjct: 424 EKVE--HIAEDLLALEGMDSQTARELAAKGVSTQEDLADLAVDDLVEMVE---------- 471 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 ++ +I+ AR W A Sbjct: 472 -------MDTERARQLIMAARAP--WFAPADRA 495 >gi|307546728|ref|YP_003899207.1| transcription elongation factor NusA [Halomonas elongata DSM 2581] gi|307218752|emb|CBV44022.1| transcription elongation factor NusA [Halomonas elongata DSM 2581] Length = 497 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 205/513 (39%), Positives = 316/513 (61%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA++ EK + R+V+ + ++ A+R + + +RV I+ TGD FR Sbjct: 4 EILAVVDAISNEKGVPREVIFEAVEAALASASRKRFEDEEASVRVHIDRNTGDYETFRRW 63 Query: 67 EVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 EVVE+ + QI L A RDP + +G VV + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 EVVEDDDFDGPDAQIKLSFAERRDPPLGLGDVVEERIENAVFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + ++ GE+++G VK+ +I+DLG++ + + R E I E R +RV+ Sbjct: 124 AERAEVVSLYAEREGELVAGIVKKTTRDGLIIDLGDNAEAFLPRSEMIPGERYRMNERVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V E RG Q++LSRT P+ +++LF +EVPEI ++++K +RDPGSRAK+AV + Sbjct: 184 ALLTKVDPEARGAQLILSRTCPELIIELFKIEVPEIAEQLIEIKGAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV TEL++E++DIV+W + A VINA+ PA V +++DE Sbjct: 244 NDRRIDPVGACVGMRGSRVQAVSTELQNERVDIVLWDDNPAQLVINAMAPADVASILVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLAS+LTGW ++++TE E R ++ + + F+ Sbjct: 304 DAHAMDVAVGEDNLAQAIGRSGQNVRLASELTGWRLNVMTEAEAETKRDQEIDSLVEHFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q ++VD+ +A LLV EGF +EE+A V + E+ IE DEE E++ RA++ L + I Sbjct: 364 QHLDVDDDVARLLVEEGFTSLEEVAYVPVEEMLEIEELDEELIEELRARAKDELLNLAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++++ +++L ++ G++ + L GI TMEDLA SVDDL E Sbjct: 424 SEEELDGAQPADDLLAMDGMERHLAFILASRGIVTMEDLAEQSVDDLTDIEE-------- 475 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 ++ S+I+ AR W E E+ Sbjct: 476 ---------LDDERAASLIMTARAP--WFESEQ 497 >gi|254361245|ref|ZP_04977388.1| N utilization substance A [Mannheimia haemolytica PHL213] gi|261492531|ref|ZP_05989084.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496806|ref|ZP_05993180.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092741|gb|EDN73784.1| N utilization substance A [Mannheimia haemolytica PHL213] gi|261307553|gb|EEY08882.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311690|gb|EEY12840.1| N utilization substance A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 498 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 188/513 (36%), Positives = 308/513 (60%), Gaps = 25/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L A+AV+ EK + ++ + + ++ A + D+RV ++ +TGD FR Sbjct: 4 EILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDIDVRVVVDRKTGDFQTFRRWA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V N T +ISL+ A+ DP++ +G + D + ++FGRVA+Q+ QV+ K+REAE+ Sbjct: 64 VVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEFGRVAIQTFGQVVKTKIREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETISRENLRPGDR 181 + EF+ +G+II TVK+V N+ ++L + VI R++ I REN RPGDR Sbjct: 124 TKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSEDIKGEAVIVREDMIPRENFRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ +Y+++ E +GPQ+ ++R P + +LF +EVPEI G++++K +RD GSRAK+AV Sbjct: 184 VRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEVPEIGEGVIEIKGSARDVGSRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A FVINA+ PA V+ +V+ Sbjct: 244 KTHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDENPAQFVINAMAPADVSSIVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +++ +++ V + L+ AIGR GQNVRLA+QLTGW ++++T EE + +++ + Sbjct: 304 NDETHSMDIAVEAKNLAQAIGRNGQNVRLATQLTGWALNVMTVEELTKKSEEEDGKVINL 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVEIQGRAREYLEGI 420 A+ +DE A +L+ EGF +E +A V + + +I+G DE+ E+Q RA+ + Sbjct: 364 LTSALEIDEEFAQVLIEEGFTSLEAIAYVPVDTLTAIDGLEDEDLVEELQSRAKNAITKK 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + +K ++ + E+L ++ G+D I L E I T+E+LA VDDL E Sbjct: 424 ALEEEKLLKSAQIEEKLLTLEGMDRHIAFKLAEKQITTLEELAEQGVDDLADIEE----- 478 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +++ +I+ AR ++ W Sbjct: 479 ------------LSEEKAGELIMAAR-QICWFN 498 >gi|325526251|gb|EGD03870.1| transcription elongation factor NusA [Burkholderia sp. TJI49] Length = 491 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGVTPELLAKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|326794269|ref|YP_004312089.1| NusA antitermination factor [Marinomonas mediterranea MMB-1] gi|326545033|gb|ADZ90253.1| NusA antitermination factor [Marinomonas mediterranea MMB-1] Length = 496 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 194/512 (37%), Positives = 320/512 (62%), Gaps = 22/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + + V+ + ++ AA+ + IRV I+ TGD + FR Sbjct: 4 EILLVAEAVSNEKDVPKQVIFEAVETALASAAKRRFEEDVKIRVSIDQRTGDYNTFRQWN 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E+ ++++ + ++ + IG + + +P +FGR+A Q+AKQVI+QKVREA Sbjct: 64 IVADEDYSYPDSELTIDDSVEQSLGLAIGEIYEEEIPSEEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + + +KVG+++ G VK+V ++IVDLG + + + +D+ I+RE R DR+++ Sbjct: 124 ERAKVVARYSEKVGKLVHGQVKKVTRDSLIVDLGENAEAALPKDQLINREMFRMNDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R + RGPQ++LSR P+FM++LF +EVPEI +++++ SRDPG RAK+AV ++ Sbjct: 184 LLSEIREDGRGPQLVLSRNVPEFMIELFKLEVPEIAEEVIEIRGASRDPGLRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+DED Sbjct: 244 DRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVIDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V + L+ AIGR GQNVRLA+ LTGW ++++T EE +Q++ + F+ Sbjct: 304 AHSMDVAVKSDNLAQAIGRNGQNVRLATSLTGWALNVMTSEEAQSKQQEESQKLIDVFVN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++D+ +A LV EGF +EE+A V + E+ I+GFDE+ E++ RA+E L + Sbjct: 364 SLDIDDDLALQLVDEGFETLEEVAYVPMEEMLDIDGFDEDLVNELRSRAKESLLNQALQA 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +E+L ++ G+DS + + GI TMEDLA SVD+LL Sbjct: 424 EEKLDDAKPAEDLLTMEGMDSHLALVFASKGIITMEDLAEQSVDELLEIE---------- 473 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ S+I+ AR W + + Sbjct: 474 -------GITEERAASLILTARAP--WFAESE 496 >gi|221134838|ref|ZP_03561141.1| transcription elongation factor NusA [Glaciecola sp. HTCC2999] Length = 494 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 206/512 (40%), Positives = 316/512 (61%), Gaps = 25/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK + ++ + + ++ A + ++RV I+ TGD FR Sbjct: 4 EILLVAEAVSNEKQVPKEKIFEALEFALSTATKKKNEGEIEVRVAIDRATGDFDTFRQWL 63 Query: 68 VVEEV---ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+ + EN ++++ A+ +P I IG V + + + F R+ Q+AKQVI QKVRE Sbjct: 64 VIPDDQVQENPYAEMTISAAQIDEPEIQIGDFVEEQIESIKFDRITTQTAKQVIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + E++D+VGE+++GTVK+V NVI+DLGN+ +GVI RD+ + REN RPGDRV+ Sbjct: 124 AERAQMIAEYEDRVGELVTGTVKKVNRDNVIIDLGNNAEGVIYRDDMLPRENFRPGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y +R E RG Q+ +SRTHP +V+LF +EVPEI +++K+ +RDPGSRAK+AV + Sbjct: 184 GLLYVIRPEARGAQLFISRTHPDMIVELFRLEVPEIAEETLEIKSAARDPGSRAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRGSRVQAV +EL E++DIV+W ++ FVINA+ PA V +V DE Sbjct: 244 NDKRLDPVGACVGMRGSRVQAVSSELGGERVDIVLWDEEAPQFVINAMAPAEVASIVADE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V + L+ AIG+ GQNVRLASQLTGW ++++T E+ +Q + + F+ Sbjct: 304 DTMTMDVAVEPDNLAQAIGKSGQNVRLASQLTGWELNVMTIEDLEKKQQDESAQIIDVFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +++DE A +L +EGF +EE+A V +SE+ IEG DE+ E++ RAR YL + Sbjct: 364 TGLDIDEEFAGVLASEGFTSLEEIAYVPVSELLEIEGLDEDIIEELRNRARAYLTTKALA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ L EEL ++ G+ ++I VAL + G+ +E+LA D++ Sbjct: 424 DEES---LEPKEELLNLAGMTNEIAVALAKQGVTDLEELAEQGTDEICDIE--------- 471 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + I+ AR + W +E Sbjct: 472 --------GLDEKSAGDFIMAAR-NIKWFNEE 494 >gi|167582087|ref|ZP_02374961.1| transcription elongation factor NusA [Burkholderia thailandensis TXDOH] Length = 491 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|291613948|ref|YP_003524105.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291584060|gb|ADE11718.1| NusA antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 491 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 203/508 (39%), Positives = 320/508 (62%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA+A EK++D+++V + ++ A + + +D+RV I+ ++G+ FR Sbjct: 4 EVLLLVDALAREKNVDKEIVFGALESALASATKKRFSDEEADVRVSIDRQSGEYESFRRW 63 Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V+++ E I L+ A+ RDP I + + +PL +DFGR+ Q+AKQVI QK+R+ Sbjct: 64 QVMDDETFETPELHIKLEEAQKRDPHIQLEEFIEEPLENIDFGRIGAQAAKQVIFQKIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ ++SGT+KR+E GN IV+ G + ++ RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILADFMERNEHLVSGTIKRIERGNAIVEFGKIEALLPRDQMIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V R RGPQ++LSR +F+ KLF +EVPEI G++++ + +RDPGSRAK+AV S Sbjct: 184 YLLRVDRTVRGPQIILSRITTEFLSKLFELEVPEIEEGLLEIVSAARDPGSRAKIAVRSH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +DP+G CVGMRGSRVQAV EL E++DI++WS + AT+VINAL PA VT +V+DE+ Sbjct: 244 DQRLDPIGTCVGMRGSRVQAVTNELAGERVDIILWSEEPATYVINALAPAEVTSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L+ AIGR GQNVRLAS +TGW I+++T E+ + +++F++ F+ Sbjct: 304 KHSMDVVVEEENLAQAIGRGGQNVRLASDMTGWEINLMTVEQSAEKNEQEFSKIRDLFVA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V + E+ +IE FDE T E++ RAR L I Sbjct: 364 KLDVDEEVADILVQEGFNTLEEVAYVPLEEMQAIESFDEATVNELRSRARNALLTAAIVN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ E+L I G+D + L G+ T E LA D+L+ + Sbjct: 424 EEQVE--HNIEDLLKIAGMDEETARTLAGKGVGTQEQLADLDGDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +I+ AR W Sbjct: 472 -------GMDAERANQLIMTARAP--WF 490 >gi|134295573|ref|YP_001119308.1| transcription elongation factor NusA [Burkholderia vietnamiensis G4] gi|134138730|gb|ABO54473.1| NusA antitermination factor [Burkholderia vietnamiensis G4] Length = 491 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERERLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLTKLAEHGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GVEEDAAKALIMKAREH--WF 490 >gi|254468012|ref|ZP_05081418.1| transcription termination factor NusA [beta proteobacterium KB13] gi|207086822|gb|EDZ64105.1| transcription termination factor NusA [beta proteobacterium KB13] Length = 485 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 202/506 (39%), Positives = 329/506 (65%), Gaps = 21/506 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + DA+A+EK++ +++V + + ++ A + Y +DIRV+I+PE+G FR V Sbjct: 1 MLILVDALAHEKNVSKEIVFNALELALASATKKKYPHGTDIRVKIDPESGAYESFRCWTV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEE + + + DR IG V+ + +P +FGR+ Q+AKQVI+QKVREAER+ Sbjct: 61 VEEENLENEEAEILLIDDRAKDKQIGDVIEESIPSEEFGRIGAQAAKQVILQKVREAERE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + +++ G ++R+E GN I+++G + ++ RD+ I +ENLR GDR+++ + Sbjct: 121 QVLNEFLARDEKLVMGQIRRMERGNAIIEIGKLEAILPRDQMIPKENLRVGDRIRAALLK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + RGPQ++LSRT P+F++KLF +EVPEI G++++ + SRDPGSR+K+AV ++D + Sbjct: 181 IETSMRGPQLILSRTSPEFIIKLFEIEVPEIEEGLLEIMSASRDPGSRSKIAVKANDQRL 240 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG CVGMRGSRVQAV TEL E++DIV+WS + A FVIN++ PA V+ +V+DE+ + Sbjct: 241 DPVGTCVGMRGSRVQAVTTELSGERVDIVLWSIEPAQFVINSMAPAEVSSIVVDEEKRSM 300 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 +++V ++QL+LAIGR GQN+RLASQLTGW ++I+TEEE +++++ +Q F++ ++V Sbjct: 301 DIVVDEDQLALAIGRNGQNIRLASQLTGWELNIMTEEESEKKHEEEYSTVSQLFIEKLDV 360 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE +A +LV EGF +EE+A V E+ ++ FDE+T E++ RA+ + I ++K+ Sbjct: 361 DEEVADILVKEGFTSLEEIAYVPTEELNQMDIFDEDTIEELRSRAKAAILTAAIANEEKV 420 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488 E E+L ++ G+D L GI +MEDLA +VD+LL Sbjct: 421 PEA--QEDLLTMEGMDQNTANLLASKGIVSMEDLAELAVDELLDI--------------- 463 Query: 489 SSLGTPKDQVESMIIHARYKMGWIEK 514 + +++ + +I+ AR W + Sbjct: 464 --IKIDEEKAKELIMTARAP--WFTE 485 >gi|171463768|ref|YP_001797881.1| NusA antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193306|gb|ACB44267.1| NusA antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 493 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 198/510 (38%), Positives = 325/510 (63%), Gaps = 25/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +ADA+A EK++ + +V + ++ A + Y DIRV I+ ETG+ FR Sbjct: 4 EVLMLADALAREKNVGQAIVFEALEMALASATKKCYATEDVDIRVSIDRETGEYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV ++ +I A+++ +++G + + + + FGR+ Q+AKQVI+Q++R Sbjct: 64 LVVPNEAGLQEPDKEILQFEAQEQLADMEVGDYIEEQIESLAFGRIGAQAAKQVILQRIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ + ++ ++++GTVKR + VI++ G + ++RRD+ I +ENLR GDRV+ Sbjct: 124 DAEREQILNDHLERGEKVMTGTVKRADKNGVIIESGRVEALLRRDQMIPKENLRSGDRVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V RE RGPQ+ LSRT P F++KLF EVPE+ G++++K +RDPG RAK+AV + Sbjct: 184 AYILKVDREARGPQIELSRTCPDFLIKLFENEVPEMEQGLLEIKGAARDPGIRAKIAVIT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+G CVG+RG+RV AV E+ E +DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 244 YDKRIDPIGTCVGVRGTRVTAVRNEVAGEAVDIVLWSEDPAQFVIGALAPAQVSSIVVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V+V +E L++AIGR GQNVRLAS LTGW I+I+T EE + +K+ + Q FM Sbjct: 304 ERHAMDVVVDEENLAIAIGRSGQNVRLASDLTGWQINIMTPEESAEKTEKEASSVRQLFM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 ++VD+ +A +L+ EGF +EE+A V +SE+ I+ FD++T E++ RAR+ L +++ Sbjct: 364 DKLDVDQEVADILIEEGFNTLEEVAYVPLSEMLEIDSFDKDTVNELRTRARDSLLTMELA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 +++I E VS++L S+ G+ +++ L +N + T +DLA +VD+L+ ++ Sbjct: 424 KEERIGE--VSQDLRSLEGMTTELIAKLADNQVHTRDDLAELAVDELVEATQ-------- 473 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +++I+ AR W Sbjct: 474 ---------IDEETAKTLIMKAREH--WFT 492 >gi|171317091|ref|ZP_02906294.1| NusA antitermination factor [Burkholderia ambifaria MEX-5] gi|171097725|gb|EDT42552.1| NusA antitermination factor [Burkholderia ambifaria MEX-5] Length = 491 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L + GI ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKGLDGITPELLAKLAEHGMQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|115351434|ref|YP_773273.1| transcription elongation factor NusA [Burkholderia ambifaria AMMD] gi|170700023|ref|ZP_02891048.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10] gi|172060473|ref|YP_001808125.1| transcription elongation factor NusA [Burkholderia ambifaria MC40-6] gi|115281422|gb|ABI86939.1| NusA antitermination factor [Burkholderia ambifaria AMMD] gi|170135082|gb|EDT03385.1| NusA antitermination factor [Burkholderia ambifaria IOP40-10] gi|171992990|gb|ACB63909.1| NusA antitermination factor [Burkholderia ambifaria MC40-6] Length = 491 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR+++P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L + G+ ++ L E+G++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|160871616|ref|ZP_02061748.1| NusA antitermination factor [Rickettsiella grylli] gi|159120415|gb|EDP45753.1| NusA antitermination factor [Rickettsiella grylli] Length = 512 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 209/529 (39%), Positives = 316/529 (59%), Gaps = 37/529 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L +A+ V+ EK +D++++ + ++ A + G D+R+ I+ TGD FR Sbjct: 2 KKEILLVAETVSNEKDVDKELIFKAIEAALAMATKKKAGEDIDVRIAIDRRTGDYETFRT 61 Query: 66 LEVVEEV------------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 VV + + I L A+ R P+ IG ++ + +P ++FGR+A Q+ Sbjct: 62 WTVVADEAEFNHSDEIPVSFDPLKHIQLSEAKKRHPNSQIGDIIEERMPSVEFGRIAAQT 121 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETIS 172 AKQVIIQKVREAER + + ++VGE++SG VKRV +IVDLG + + + R+E I Sbjct: 122 AKQVIIQKVREAERAKIAEAYTNRVGELLSGIVKRVTREGLIVDLGASVEAFVPREEMIP 181 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 RE +R DR++ Y+Y V + RGPQ+L+SRT P+ +++LF +EVPEI ++++K+ +RD Sbjct: 182 REEIRSEDRLRGYLYAVNPQVRGPQLLMSRTRPEMLIELFKIEVPEIGEELIEIKSAARD 241 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 PGSRAK+AV ++D IDP+GACVGMRG+RVQAV +EL E+IDIV+W + VINA+ Sbjct: 242 PGSRAKIAVKTNDGRIDPIGACVGMRGARVQAVSSELAGERIDIVLWDDNPVQLVINAMA 301 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V +V+DED ++V V ++QLS AIGR GQNVRLAS+LTGW I++IT EE + Sbjct: 302 PAEVASIVVDEDTKVMDVAVQEDQLSQAIGRNGQNVRLASELTGWIINVITVEEAAKKIV 361 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 K+ F++ + +DE +A +LV EGF +EE+A V E+ +IEGFD +Q R Sbjct: 362 KESENLQNLFIEQLTIDEALAEMLVREGFTSLEEIAYVSAQELLAIEGFDSILVEMLQTR 421 Query: 413 AREYLEGIDITLQ-----KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 A+E L T Q + + L +L S+ G+ +I L + G+ + E LA +V Sbjct: 422 AKEVLALQAPTKQKSSTTEHEKFLEPHRDLLSLEGMTEEIATTLAKRGVSSREALAELAV 481 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 DDLL E +++ +I+ AR W +EK Sbjct: 482 DDLLDIIE-----------------LDREKAGKLIMSARAP--WFVEEK 511 >gi|167562940|ref|ZP_02355856.1| transcription elongation factor NusA [Burkholderia oklahomensis EO147] Length = 491 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+ Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMDEESAKALIMKAREH--WF 490 >gi|92115190|ref|YP_575118.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043] gi|91798280|gb|ABE60419.1| NusA antitermination factor [Chromohalobacter salexigens DSM 3043] Length = 497 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 201/513 (39%), Positives = 310/513 (60%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA++ EK + R+V+ + ++ A+R + G RV+I+ TGD FR Sbjct: 4 EILLVVDAISNEKGVPREVIFEAVESALASASRKRFDGQEVSTRVKIDRATGDYDTFRRW 63 Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ EN +I L A RDP + +G VV + + + FGR+A Q+AKQVI+QKVRE Sbjct: 64 TVVEDEAFENPDSEIPLSEAERRDPPLALGDVVEEQVESVAFGRIAAQTAKQVIVQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER ++ ++ GE+++G VK+ +IVDLG + + + R E I E R +RV+ Sbjct: 124 AERAEVVRQYAEREGELVAGIVKKTTREGLIVDLGENAEAFLPRSEMIPGERYRMNERVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + ++ V E RG Q++L+RT P +V+LF +EVPEI ++++K +RDPG+RAK+AV + Sbjct: 184 ALLWKVDAEARGSQLILTRTRPDMIVELFKIEVPEIAEQLIEIKGAARDPGARAKIAVKT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQAV ELR+E++DI++W + A VINA+ PA V +++DE Sbjct: 244 NDKRIDPVGACVGMRGSRVQAVSNELRNERVDIIMWDDNPAQLVINAMAPAEVGSILVDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++V V ++ L+ AIGR GQNVRLAS+LTGWT++++TEEE R+++ + ++F+ Sbjct: 304 DAHSMDVAVAEDNLAQAIGRSGQNVRLASELTGWTLNVMTEEEAEGKREQEIDSLIEYFI 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + VDE +A LLV EGF +EELA V + E+ IE DE ++ RA++ L + I Sbjct: 364 NHLEVDEELARLLVEEGFTSLEELAYVPLEELLEIEELDEALIETLRARAKDELLTLAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + ++L + G+D + L GI T EDLA S+ Sbjct: 424 SEEALDGAQPDDDLLEMEGMDRHLAFTLASRGIVTREDLAEQSI---------------- 467 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 D +++ ++I+ AR W E E+ Sbjct: 468 -DDLKDIDDVDEERAAALIMTARAP--WFESEQ 497 >gi|186476488|ref|YP_001857958.1| transcription elongation factor NusA [Burkholderia phymatum STM815] gi|184192947|gb|ACC70912.1| NusA antitermination factor [Burkholderia phymatum STM815] Length = 491 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 215/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFDEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKADAQIDDFLEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGESIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ GV+ +L S+ G+D+++ L E+ I+T +DLA +VD+L+ + Sbjct: 424 EEKVE--GVALDLKSLDGMDAELLAKLAEHQIQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GVTEDAAKALIMKAREH--WF 490 >gi|53719533|ref|YP_108519.1| transcription elongation factor NusA [Burkholderia pseudomallei K96243] gi|53724824|ref|YP_102761.1| transcription elongation factor NusA [Burkholderia mallei ATCC 23344] gi|76808602|ref|YP_333313.1| transcription elongation factor NusA [Burkholderia pseudomallei 1710b] gi|121598320|ref|YP_992838.1| transcription elongation factor NusA [Burkholderia mallei SAVP1] gi|124384704|ref|YP_001026181.1| transcription elongation factor NusA [Burkholderia mallei NCTC 10229] gi|126439048|ref|YP_001058778.1| transcription elongation factor NusA [Burkholderia pseudomallei 668] gi|126449841|ref|YP_001080549.1| transcription elongation factor NusA [Burkholderia mallei NCTC 10247] gi|126455004|ref|YP_001066030.1| transcription elongation factor NusA [Burkholderia pseudomallei 1106a] gi|134282331|ref|ZP_01769036.1| transcription termination factor NusA [Burkholderia pseudomallei 305] gi|167004351|ref|ZP_02270109.1| transcription termination factor NusA [Burkholderia mallei PRL-20] gi|167719819|ref|ZP_02403055.1| transcription elongation factor NusA [Burkholderia pseudomallei DM98] gi|167738820|ref|ZP_02411594.1| transcription elongation factor NusA [Burkholderia pseudomallei 14] gi|167816041|ref|ZP_02447721.1| transcription elongation factor NusA [Burkholderia pseudomallei 91] gi|167824417|ref|ZP_02455888.1| transcription elongation factor NusA [Burkholderia pseudomallei 9] gi|167845949|ref|ZP_02471457.1| transcription elongation factor NusA [Burkholderia pseudomallei B7210] gi|167894526|ref|ZP_02481928.1| transcription elongation factor NusA [Burkholderia pseudomallei 7894] gi|167902931|ref|ZP_02490136.1| transcription elongation factor NusA [Burkholderia pseudomallei NCTC 13177] gi|167911167|ref|ZP_02498258.1| transcription elongation factor NusA [Burkholderia pseudomallei 112] gi|167919191|ref|ZP_02506282.1| transcription elongation factor NusA [Burkholderia pseudomallei BCC215] gi|217423351|ref|ZP_03454852.1| transcription termination factor NusA [Burkholderia pseudomallei 576] gi|226199712|ref|ZP_03795265.1| transcription termination factor NusA [Burkholderia pseudomallei Pakistan 9] gi|237812041|ref|YP_002896492.1| transcription elongation factor NusA [Burkholderia pseudomallei MSHR346] gi|238562584|ref|ZP_00440122.2| transcription termination factor NusA [Burkholderia mallei GB8 horse 4] gi|242314941|ref|ZP_04813957.1| transcription termination factor NusA [Burkholderia pseudomallei 1106b] gi|254178511|ref|ZP_04885166.1| transcription termination factor NusA [Burkholderia mallei ATCC 10399] gi|254179981|ref|ZP_04886580.1| transcription termination factor NusA [Burkholderia pseudomallei 1655] gi|254188607|ref|ZP_04895118.1| transcription termination factor NusA [Burkholderia pseudomallei Pasteur 52237] gi|254198017|ref|ZP_04904439.1| transcription termination factor NusA [Burkholderia pseudomallei S13] gi|254206031|ref|ZP_04912383.1| transcription termination factor NusA [Burkholderia mallei JHU] gi|254260843|ref|ZP_04951897.1| transcription termination factor NusA [Burkholderia pseudomallei 1710a] gi|254358405|ref|ZP_04974678.1| transcription termination factor NusA [Burkholderia mallei 2002721280] gi|52209947|emb|CAH35919.1| N utilization substance protein A [Burkholderia pseudomallei K96243] gi|52428247|gb|AAU48840.1| N utilization substance protein A [Burkholderia mallei ATCC 23344] gi|76578055|gb|ABA47530.1| N utilization substance protein A [Burkholderia pseudomallei 1710b] gi|121227130|gb|ABM49648.1| transcription termination factor NusA [Burkholderia mallei SAVP1] gi|124292724|gb|ABN01993.1| N utilization substance protein A [Burkholderia mallei NCTC 10229] gi|126218541|gb|ABN82047.1| transcription termination factor NusA [Burkholderia pseudomallei 668] gi|126228646|gb|ABN92186.1| transcription termination factor NusA [Burkholderia pseudomallei 1106a] gi|126242711|gb|ABO05804.1| transcription termination factor NusA [Burkholderia mallei NCTC 10247] gi|134246369|gb|EBA46458.1| transcription termination factor NusA [Burkholderia pseudomallei 305] gi|147753474|gb|EDK60539.1| transcription termination factor NusA [Burkholderia mallei JHU] gi|148027532|gb|EDK85553.1| transcription termination factor NusA [Burkholderia mallei 2002721280] gi|157936286|gb|EDO91956.1| transcription termination factor NusA [Burkholderia pseudomallei Pasteur 52237] gi|160699550|gb|EDP89520.1| transcription termination factor NusA [Burkholderia mallei ATCC 10399] gi|169654758|gb|EDS87451.1| transcription termination factor NusA [Burkholderia pseudomallei S13] gi|184210521|gb|EDU07564.1| transcription termination factor NusA [Burkholderia pseudomallei 1655] gi|217393209|gb|EEC33230.1| transcription termination factor NusA [Burkholderia pseudomallei 576] gi|225928298|gb|EEH24332.1| transcription termination factor NusA [Burkholderia pseudomallei Pakistan 9] gi|237503145|gb|ACQ95463.1| transcription elongation factor NusA [Burkholderia pseudomallei MSHR346] gi|238522259|gb|EEP85704.1| transcription termination factor NusA [Burkholderia mallei GB8 horse 4] gi|242138180|gb|EES24582.1| transcription termination factor NusA [Burkholderia pseudomallei 1106b] gi|243060319|gb|EES42505.1| transcription termination factor NusA [Burkholderia mallei PRL-20] gi|254219532|gb|EET08916.1| transcription termination factor NusA [Burkholderia pseudomallei 1710a] Length = 491 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|21672641|ref|NP_660708.1| transcription elongation factor NusA [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090841|sp|Q8K9H0|NUSA_BUCAP RecName: Full=Transcription elongation protein nusA gi|21623276|gb|AAM67919.1| N utilization substance protein A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 495 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 187/509 (36%), Positives = 304/509 (59%), Gaps = 19/509 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV IN +TG+ S FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKYEQEIDVRVSINRKTGNFSTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+ V + T +I+L+ A + I V D + ++F R+ Q+AKQVI+QKVREA Sbjct: 62 WMVVDIVVHPTKEITLEAACFEGEQVKINDYVEDKIESVNFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ +G+II+G VK++ N+ +DLGN+ + +I R+ + REN RPGDR++ Sbjct: 122 ERAMLVDQFRKHIGQIITGIVKKISRDNLTLDLGNNAEALILREGMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ LSR+ + +++LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYGVYPEARGAQLFLSRSKTEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +++DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVVSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ F + Sbjct: 302 HHTMDIAVDSSNLAQAIGRNGQNVRLASQISGWELNVMTTEDLRSKHKEEAYAAFNIFKK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +NV E + LV EGF+ +EELA + ++E+ I E ++ A+ L +++ Sbjct: 362 NLNVSEKVIKTLVKEGFSSLEELAYIPLNELLEINNLTEREVQLVREGAKNGLLLLELDQ 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 + +I+ + + L ++ G++ + + L E I T+E+LA +DDL+ Sbjct: 422 KNQIKNKKIEQALLNVNGMNELLALKLAEKNIFTVEELANQGIDDLIDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 472 -------NLNSEQAGLLIMAAR-NICWFS 492 >gi|221067737|ref|ZP_03543842.1| NusA antitermination factor [Comamonas testosteroni KF-1] gi|220712760|gb|EED68128.1| NusA antitermination factor [Comamonas testosteroni KF-1] Length = 495 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 319/512 (62%), Gaps = 24/512 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK+ Sbjct: 62 WVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV Sbjct: 122 RDAEREMLLNEFLARGDKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L + Sbjct: 422 AREENVSKA--SEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDELTDITGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 ++ +++I+ AR W Sbjct: 474 -----------TAEEAKALIMKAREH--WFAD 492 >gi|87119792|ref|ZP_01075689.1| transcription elongation factor NusA [Marinomonas sp. MED121] gi|86165268|gb|EAQ66536.1| transcription elongation factor NusA [Marinomonas sp. MED121] Length = 496 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 190/512 (37%), Positives = 320/512 (62%), Gaps = 22/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD + +R + Sbjct: 4 DILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEEAKIRVSIDQRTGDYTTYRQWD 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E+ ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVREA Sbjct: 64 IVADEDYAQPAHELTIDDSVEQNLGLAIGEIFEEEVESEAFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + + +KVG+ + G VK+V ++IVDLG + + V+ +D+ I+RE R DR+++ Sbjct: 124 ERAKVVARYSEKVGKPVHGQVKKVTRDSLIVDLGENAEAVLPKDQLIARETFRMNDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R + RG Q++LSR P FMV+LF +EVPEI +++++ +RDPG RAK+AV ++ Sbjct: 184 LLLEIRDDSRGAQLILSRNDPAFMVELFRLEVPEIAEEMIEIRGAARDPGLRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV EL E++DIV+W + A VINA+ PA V +V+DED Sbjct: 244 DRRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQLVINAMSPAEVDSIVIDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V + L+ AIGR GQNVRLAS LTGW ++++T E+ +Q++ ++ F+ Sbjct: 304 THSMQVAVNADNLAQAIGRNGQNVRLASNLTGWQLNVMTSEDAVAKQQEESDKLINLFVN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++++D+ +A L EGFA +EE+A V + E+ I+ FDE+ E++ RA+E L + + Sbjct: 364 SLDIDDDLAGQLADEGFATLEEIAYVPMEEMLDIDDFDEDLVNELRSRAKEALLNLALQA 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ E +E+L ++ G+D+ + + L GI TMEDLA SVDDL+ E Sbjct: 424 EEQLEEATPAEDLLTMEGMDNHLALVLASKGICTMEDLAEQSVDDLIDIEE--------- 474 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ S+I+ AR W + + Sbjct: 475 --------INEERAASLIMTARAP--WFAESE 496 >gi|167570129|ref|ZP_02363003.1| transcription elongation factor NusA [Burkholderia oklahomensis C6786] Length = 491 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 211/508 (41%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P ++IG + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEIGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ + +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLVPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + F+ Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDALRGLFIA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ S++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTSELLAKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMDEESAKALIMKAREH--WF 490 >gi|167856225|ref|ZP_02478960.1| translation initiation factor IF-2 [Haemophilus parasuis 29755] gi|167852645|gb|EDS23924.1| translation initiation factor IF-2 [Haemophilus parasuis 29755] Length = 510 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 198/525 (37%), Positives = 319/525 (60%), Gaps = 37/525 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPE 56 E+L A+AV+ EK + +D + + ++ + + G D+RV I+ + Sbjct: 4 EILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVIDRK 63 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A+Q Sbjct: 64 TGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTARQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDE 169 VI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R++ Sbjct: 124 VITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVRED 183 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K Sbjct: 184 MLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIKGA 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+IN Sbjct: 244 SRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFLIN 303 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDELEK 363 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVE 408 Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G DE+ E Sbjct: 364 KHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLVEE 423 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 +Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA SVD Sbjct: 424 LQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQSVD 483 Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 DL E ++ +I+ AR ++ W Sbjct: 484 DLADIEE-----------------LTAEKAAELIMAAR-QICWFS 510 >gi|167836822|ref|ZP_02463705.1| transcription elongation factor NusA [Burkholderia thailandensis MSMB43] Length = 491 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 337/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPEVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILVDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ +++ L E G++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTAELLTKLAEQGVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|114331633|ref|YP_747855.1| transcription elongation factor NusA [Nitrosomonas eutropha C91] gi|114308647|gb|ABI59890.1| NusA antitermination factor [Nitrosomonas eutropha C91] Length = 490 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 208/508 (40%), Positives = 320/508 (62%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +A+A+EK++D+++V + + ++ AA+ D+RV I+ +TG+ FR Sbjct: 4 EILLLVNALAHEKNVDKNIVFTALEMALASAAKKHARDDIDVRVSIDRDTGEFQCFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V + VE+ QI+L A ++P G + + + F R+ Q+AKQVI QK+R+A Sbjct: 64 IVADDVVEHPERQIALVEAVKQNPQSVPGEYTEELMEDVTFDRIGAQAAKQVIFQKIRDA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ ++SG +KR++ GN I++ G + V+ RD+ IS ENLR GDRV++Y Sbjct: 124 EREQNLNDFLERGEYLVSGVIKRMDRGNAIIEFGKIEAVLPRDQMISHENLRMGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSRT F+VKLF +EVPEI GI++++A +RDPGSRAK+AV S+D Sbjct: 184 LLKIDRAVRGPQLVLSRTSADFLVKLFELEVPEIEEGILEIRAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DP+G CVGMRGSRVQAV EL E++DI+ WS D ATFV+NAL PA+++ +V+DED Sbjct: 244 ARVDPIGTCVGMRGSRVQAVTGELAGERVDIIQWSDDQATFVVNALAPAVISSIVMDEDK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V +E L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ + FM+ Sbjct: 304 HSMDVVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTVEESHEKSEEEAASICELFMEK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE + +LV EGF+ +EE+A + I E+ I+ FD ET E++ RAR L I + Sbjct: 364 LDVDEEVGRILVDEGFSTLEEIAYIPIEEMLEIQEFDHETIEELRNRARNVLLTAAIVTE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +KI SE L ++ G+D + L GI T E+LA + DDL+ + Sbjct: 424 EKIG--HASEALLALEGMDIDLVRELAAKGISTQEELADLAADDLVELT----------- 470 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +II AR W Sbjct: 471 ------GVDLDRASKIIIKAREP--WFT 490 >gi|206559872|ref|YP_002230636.1| transcription elongation factor NusA [Burkholderia cenocepacia J2315] gi|198035913|emb|CAR51805.1| N utilization substance protein A [Burkholderia cenocepacia J2315] Length = 491 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G V +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPDVEVGEYVEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVIAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLA +LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+ ++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHAVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|264677930|ref|YP_003277837.1| NusA antitermination factor [Comamonas testosteroni CNB-2] gi|299530199|ref|ZP_07043625.1| NusA antitermination factor [Comamonas testosteroni S44] gi|262208443|gb|ACY32541.1| NusA antitermination factor [Comamonas testosteroni CNB-2] gi|298721856|gb|EFI62787.1| NusA antitermination factor [Comamonas testosteroni S44] Length = 495 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 319/512 (62%), Gaps = 24/512 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RDVV + ++ +A + LY DIRV I+ E+GD FR Sbjct: 2 NRELLMLVEAISREKNVERDVVFGAVESALAQATKKLYQGEVDIRVSIDRESGDYDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A DR P I IG + + + + GR+ +AKQVI+QK+ Sbjct: 62 WVVVSDDAGLQNPDAEEMLMDAEDRVPGIQIGEFIEEQIESLPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ EF + +I +GTVKR++ G++IV+ G +G ++R E I +ENLR GDRV Sbjct: 122 RDAEREMLLNEFLARGEKIFTGTVKRMDKGDIIVESGRVEGRLKRGEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG +LLSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDATLRGAPILLSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDAGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + + F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVSRKLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIESFDEETVNELRSRAKDALLSQEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + + SE+L S+ G+ +++ L + + T +DLA ++D+L + Sbjct: 422 AREENVSKA--SEDLVSLDGMTAELLDKLAQADVHTRDDLADLAIDELTEITGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 ++ +++I+ AR W Sbjct: 474 -----------TAEEAKALIMKAREH--WFTD 492 >gi|330722350|gb|EGH00207.1| Transcription termination protein NusA [gamma proteobacterium IMCC2047] Length = 503 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 207/519 (39%), Positives = 326/519 (62%), Gaps = 27/519 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS--DIRVEINPETGDISLFRL 65 E+L +A+AV+ EK + V++ + ++ A R YG DIRV I+ TGD +R Sbjct: 4 EVLLVAEAVSNEKGVPESVIIEALELALATATRKRYGEDEQVDIRVTIDRRTGDYESYRR 63 Query: 66 LEVVEEVENY-----TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 V+ + + T ++ A+ +D S+++G V + + ++FGR+A Q+AKQVI+Q Sbjct: 64 WTVISDDDMDIEFHDTMHLTPAEAKKKDASLEVGDVWEEQIENVEFGRIAAQTAKQVIVQ 123 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 KVREAER + ++D+VGE+++GTVK+V VI+DLGN+ + + RD I +E R Sbjct: 124 KVREAERAKVVEAYRDRVGEVLNGTVKKVTRDQVIIDLGNNAEAQLTRDHLIPKEIFRMN 183 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+++ + V E RGPQ+++SRT P+F+++LF +EVPEI +V+++A +RD G+RAK+ Sbjct: 184 DRLRALLVSVGEETRGPQLVVSRTAPEFLIELFKIEVPEIAEQVVEIRAAARDAGTRAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A VINAL PA V + Sbjct: 244 AVKTNDGRIDPVGACVGMRGSRVQAVSNELAGERIDIVLWDDNPAQMVINALAPAEVESI 303 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++DE+ ++V V + L++AIGR GQNVRLAS+LTGWTI+++T E+ ++++ Sbjct: 304 IMDEESNTMDVAVSGDNLAIAIGRSGQNVRLASELTGWTINVMTAEDAEAKQEEEMVAII 363 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM+ ++V+E +A LLV EGF +EE+A V I E+ I+GFDEE ++ RA++ L Sbjct: 364 ERFMERLDVEEDLAVLLVEEGFTSLEEIAYVPIEEMLEIDGFDEEIVEALRLRAKDVLLT 423 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 I ++++ +++L + G+D + L G+ TMEDLA +VDDLLG Sbjct: 424 QAIASEEELEGTEPAQDLLEMDGMDKHLAYVLASKGVITMEDLAEQAVDDLLGIE----- 478 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G +++ ++I+ AR W +E+ + Sbjct: 479 ------------GLDEERAANLIMTARAP--WFAEEQES 503 >gi|167587339|ref|ZP_02379727.1| NusA antitermination factor [Burkholderia ubonensis Bu] Length = 491 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ +++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKGDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQGEERDRLRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+G+ T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLSKLAEHGVATRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GVEEDAAKALIMKAREH--WF 490 >gi|254297816|ref|ZP_04965269.1| transcription termination factor NusA [Burkholderia pseudomallei 406e] gi|157807196|gb|EDO84366.1| transcription termination factor NusA [Burkholderia pseudomallei 406e] Length = 487 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 209/507 (41%), Positives = 334/507 (65%), Gaps = 24/507 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR V Sbjct: 1 MLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLV 60 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + ++ +I L AR++ P +++G + + +P ++FGR+ Q+AKQVI+QKVR+A Sbjct: 61 VPDEAGLQEPDREILLFEAREQKPDVEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRDA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++Y Sbjct: 121 EREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRAY 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + D Sbjct: 181 IAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAYD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 241 KRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEK 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 301 HSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMAR 360 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I + Sbjct: 361 LDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIANE 420 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ + +L S+ G+ ++ L E G++T +DLA +VD+L+ + Sbjct: 421 EKVETAAL--DLKSLDGVTPELLAKLAEQGVQTRDDLAELAVDELVDMT----------- 467 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 468 ------GMEEEAAKALIMKAREH--WF 486 >gi|219870469|ref|YP_002474844.1| transcription elongation factor NusA [Haemophilus parasuis SH0165] gi|219690673|gb|ACL31896.1| transcription elongation factor NusA [Haemophilus parasuis SH0165] Length = 510 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 197/525 (37%), Positives = 318/525 (60%), Gaps = 37/525 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTMSDIRVEINPE 56 E+L A+AV+ EK + +D + + ++ + + G D+RV I+ + Sbjct: 4 EILLAAEAVSNEKLLPKDAIFEALETALAISTKKKAAAEREDRKTGNGIDIDVRVVIDRK 63 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG + +R VVE+V ++T +I+L+ A+ DP+I +G V D + + F R+ +Q+A+Q Sbjct: 64 TGAFTTYRRWLVVEKVHHHTREITLEAAQFEDPNIQLGDYVEDEIESIAFDRITMQTARQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-------NSDGVIRRDE 169 VI K+REAER++ +F+ + G+I+ GTVK+V ++I++L ++ VI R++ Sbjct: 124 VITMKIREAERNKVIEQFRSEEGKIVIGTVKKVSRESIILELAGKKDDTTKAEAVIVRED 183 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + REN RPGDRV+ +Y ++ E +GPQ+ ++R P + +LF +EVPEI ++++K Sbjct: 184 MLPRENFRPGDRVRGVLYAIKPESKGPQLFVTRAKPVMLQELFKLEVPEIGEEVIEIKGA 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 SRDPGSRAK+AV S+D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A F+IN Sbjct: 244 SRDPGSRAKIAVKSNDKRIDPVGACVGMRGARVQAITNELGGERVDIVLWDDNPAQFLIN 303 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T +E Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEANALAQAIGRNGQNVRLATQLTGWTLNVMTTDELEK 363 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVE 408 Q + N+ FM A+ +DE AHLL+ EGF +EE+A V + E+ +I+G DE+ E Sbjct: 364 KHQAEDNKVINLFMDALEIDEEFAHLLIEEGFTSLEEIAYVPVKELTAIDGLEDEDLVEE 423 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 +Q RA+ + + ++ +++ + ++L ++ G+D I L E I T+EDLA VD Sbjct: 424 LQVRAKNAITAKALAEEEALKQAHIEDKLLNLEGMDRHIAFKLAEKQITTLEDLAEQGVD 483 Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 DL E ++ +I+ AR ++ W Sbjct: 484 DLADIEE-----------------LTAEKAAELIMAAR-QICWFS 510 >gi|83719213|ref|YP_443082.1| transcription elongation factor NusA [Burkholderia thailandensis E264] gi|167620248|ref|ZP_02388879.1| transcription elongation factor NusA [Burkholderia thailandensis Bt4] gi|257139311|ref|ZP_05587573.1| transcription elongation factor NusA [Burkholderia thailandensis E264] gi|83653038|gb|ABC37101.1| N utilization substance protein A [Burkholderia thailandensis E264] Length = 491 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +++G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKPGVEVGDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ + FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNEERDALRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ ++ L E ++T +DLA +VD+L+ + Sbjct: 424 EEKVETAAL--DLKSLDGVTPELLAKLAEQSVQTRDDLAELAVDELVDMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GMEEEAAKALIMKAREH--WF 490 >gi|304414228|ref|ZP_07395596.1| transcription termination/antitermination L factor [Candidatus Regiella insecticola LSR1] gi|304283442|gb|EFL91838.1| transcription termination/antitermination L factor [Candidatus Regiella insecticola LSR1] Length = 506 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 187/521 (35%), Positives = 307/521 (58%), Gaps = 30/521 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + + ++RV I+ +TGD FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEIALATATKKKHEQEIEVRVNIDRKTGDFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSI-----------DIGGVVSDPLPPMDFGRVAVQSA 114 +VV EV T +I+L+ A++ +I + D + + F R+ Q+A Sbjct: 62 WKVVSEVVMPTREITLEAAQEISKEEAQQNTPISTESEIPTYIEDQIKSVVFDRITTQTA 121 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISR 173 KQVI+QKVREAER +F+++ G+I++ TVK+V ++I+DLGN+ +G+I +++ + R Sbjct: 122 KQVIVQKVREAERAVVIEQFREQEGKIVTATVKKVSRESIILDLGNNAEGIIGQEDMLPR 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 EN+RPGDR++ +Y++R E RGPQ+ +SR+ P+ +++LF +EVPEI ++++KA RDP Sbjct: 182 ENIRPGDRIRGILYEIRPEARGPQLFISRSRPEMLIELFRIEVPEIDEELIEIKAAIRDP 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 SRAK+AV ++D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FV+NA+ P Sbjct: 242 ASRAKIAVKTNDKRIDPIGACVGMRGARVQAVSNELGGERIDIVLWDDNPAQFVLNAMAP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 A V +V+DED + + V + + AIGR GQNVRL SQL+GW ++++T E Q Sbjct: 302 AEVASIVVDEDAKTMNIAVEEGNSAQAIGRNGQNVRLVSQLSGWELNVMTINELKEKCQA 361 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + F++ + +DE A +LV F+ +EELA V SE+ I+ FD++ E++ RA Sbjct: 362 ETRTAIDMFIEHLEIDEECATVLVEAEFSSLEELAYVPESELPEIDSFDKKRLQELRDRA 421 Query: 414 REYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + L + + ++ + +++L ++ +D + L G+ T+EDLA V DL Sbjct: 422 QNVLTTLALKKEESFGDNKPADDLLNLASLDRDMAFKLAACGVCTLEDLAEQGVSDLADI 481 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 E ++ +I+ AR + W Sbjct: 482 EE-----------------LDDEKAGKLIMAAR-NICWFGD 504 >gi|300113656|ref|YP_003760231.1| transcription termination factor NusA [Nitrosococcus watsonii C-113] gi|299539593|gb|ADJ27910.1| transcription termination factor NusA [Nitrosococcus watsonii C-113] Length = 506 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 215/524 (41%), Positives = 329/524 (62%), Gaps = 23/524 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR Sbjct: 2 NKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRS 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EV+E+ +E Q+ L A RD S ++GGVV +P+ + FGR+A Q+AKQVI+QKV Sbjct: 62 WEVIEDEAELEAPERQMCLSEACKRDSSAEVGGVVKEPMESIAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + ++ +V E++ G VKR++ GN+I+DLG++ +G+I ++E I RE +RPGDR Sbjct: 122 REAERAKVAAAYQGRVKEMVMGVVKRMDRGNIILDLGDNAEGIIPQEEMIPREAVRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV Sbjct: 182 LRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA +V+ Sbjct: 242 KTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEAVSIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q Sbjct: 302 DEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQM 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ I + + +EL + +D + AL GI T E+LA +VD+L+ Sbjct: 422 IANEETIETVQLDQELLDMEEVDHGLASALASKGITTKENLAEQAVDELMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G +++ +I+ AR W E+ +DE + Sbjct: 475 ----------GMKREKAARLIMAARES--WFADEEQSDETEERQ 506 >gi|91774422|ref|YP_544178.1| transcription elongation factor NusA [Methylobacillus flagellatus KT] gi|91708409|gb|ABE48337.1| NusA antitermination factor [Methylobacillus flagellatus KT] Length = 488 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 208/508 (40%), Positives = 325/508 (63%), Gaps = 25/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ + V+ + + ++ A + + +D+RVEI+ ++G+ FR + Sbjct: 4 EILLLVDALAHEKNVAKTVIFTALELALASATKKRFTEDADVRVEIDRDSGEYRSFRRWQ 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE +EN QI++ AR +G + +PL ++FGR+ Q+AKQVI+QKVREA Sbjct: 64 VVEADALENPAAQIAVDDARA--EGFAVGDYIEEPLESVEFGRIGAQAAKQVILQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + +++G +KR+E GN I+++G + V+ R++ I +ENLR GDRV++Y Sbjct: 122 EREQILDDFLARKEHLVTGVIKRMEKGNAIIEVGRLESVLPREQMIPKENLRVGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + R RGPQ++LSR P+F++KLF +EVPEI G++++K+ +RDPG R+K+AV S+D Sbjct: 182 LSRIERSGRGPQLILSRVAPEFLIKLFELEVPEIEEGLLEIKSAARDPGLRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG CVGMRGSRVQAV EL E++DIV+WS D A FVINA+ PA V+ +V+DED Sbjct: 242 QRLDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSMDPAQFVINAMAPAEVSGIVVDEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++VIV +EQL+ AIGR GQNVRLAS+LTGWT++I+TEEE + +++ + Q F++ Sbjct: 302 HSMDVIVDEEQLAQAIGRNGQNVRLASELTGWTLNILTEEEAAKKSEEEHSSILQLFVEK 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE +A +LV EGF+ +EE+A V ++E++ IE FDE+T E++ RAR L I + Sbjct: 362 LDVDEEVADILVQEGFSTLEEIAYVPLAEMSEIEAFDEDTINELRKRARAALLTEAIAKE 421 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K E SE+L + G+D L G+ TM D Sbjct: 422 EKAGEA--SEDLLHMEGMDEATARTLAGKGVATM-----------------DDLADLAVD 462 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G ++ + +I+ AR W Sbjct: 463 DLVELTGMDVERAKQLIMTARAP--WFA 488 >gi|238027585|ref|YP_002911816.1| transcription elongation factor NusA [Burkholderia glumae BGR1] gi|237876779|gb|ACR29112.1| Transcription elongation factor NusA [Burkholderia glumae BGR1] Length = 491 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 338/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVVL + ++ A++ L+ ++IRV+I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVQIDRESGEHETFRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P +D+G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQQPGVDVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR DRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVSDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQNEERDRLRGLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ G+ S++ L ENG++T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLEGMTSELLAKLAENGVQTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GVEEEAAKALIMKAREH--WF 490 >gi|118594129|ref|ZP_01551476.1| NusA antitermination factor [Methylophilales bacterium HTCC2181] gi|118439907|gb|EAV46534.1| NusA antitermination factor [Methylophilales bacterium HTCC2181] Length = 488 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 202/506 (39%), Positives = 328/506 (64%), Gaps = 21/506 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A+EK++ RD++ + + ++ A + + DIRVEI+ E+G+ FR Sbjct: 4 EILLLVDALAHEKNVARDIIFTALELALASATKKKFEADVDIRVEIDKESGEYESFRCWT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE+ + L DR +++G V+ + + ++FGR+ Q+AKQVI+QKVREAER Sbjct: 64 IVEDELLEIPEAELSPTDDRAKDLEVGDVIKEAIDSVEFGRIGAQAAKQVILQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 ++ +F + +++SG ++R+E GN I+++G D V+ RD I +ENLR GDRV++ + Sbjct: 124 EQILNDFLARDEKLVSGQIRRMERGNAIIEVGRLDAVLPRDHMIPKENLRVGDRVRAILS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + RGPQ++LSRT P+F+++LF +EVPEI G++++ + SRDPG R+K+AV ++D Sbjct: 184 KIETGMRGPQLILSRTAPEFLIRLFELEVPEIEEGLLEIMSASRDPGLRSKIAVKANDQR 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVGMRGSRVQAV EL E++DIV+WS + A FVINA+ PA V+ +V+DED Sbjct: 244 LDPVGTCVGMRGSRVQAVTGELAGERVDIVLWSIEPAQFVINAMAPAEVSSIVVDEDKHS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++++V ++QL+ AIGR GQN+RLAS+LTGW ++I+TEEE ++++ +Q F++ ++ Sbjct: 304 MDLVVVEDQLAQAIGRNGQNIRLASELTGWELNILTEEESDQKNKEEYTSASQLFIEKLD 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF+ +EE+A V + E+ IE FDE+T E++ RA + I ++ Sbjct: 364 VDEDVADILVQEGFSSIEEVAYVPLEEMVQIEAFDEDTVNELRSRASAAILTAAIAKEES 423 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 + + +E+L S+ G+D + + GI TMEDLA SVD+LL Sbjct: 424 VVD--PAEDLKSMDGMDIDMAKLMASKGIVTMEDLAELSVDELLEL-------------- 467 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIE 513 + +++ +++I+ AR W Sbjct: 468 ---VKIDEEKAKTLIMTARAP--WFA 488 >gi|152978792|ref|YP_001344421.1| transcription elongation factor NusA [Actinobacillus succinogenes 130Z] gi|150840515|gb|ABR74486.1| NusA antitermination factor [Actinobacillus succinogenes 130Z] Length = 511 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 202/526 (38%), Positives = 317/526 (60%), Gaps = 37/526 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----------GTMSDIRVEINPE 56 E+L A+AV+ EK++ ++V+ + +I + + + + D+RV I+P+ Sbjct: 4 EILLAAEAVSNEKALPKEVIFEALEAAIALSTKKKHAQKQERLGVDKPSEIDVRVAIDPK 63 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG+ FR VVEEV N T +I+L+ AR DP+I +G VV D + + F R+ +Q+A+Q Sbjct: 64 TGEFDTFRRWTVVEEVVNPTREITLEAARLDDPAIQLGDVVEDQIESVAFDRITMQTARQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-------GNSDGVIRRDE 169 VI K+R+AER + +F + G+I+ GTVK+V +++++L ++ VI R++ Sbjct: 124 VISTKIRDAERSKVVEQFLSEEGKIVIGTVKKVNRESIVLELLGNKEDPAKAEAVIARED 183 Query: 170 TISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I REN RPGDRV+ +Y V E +G Q+ ++R+ P + +LF +EVPEI I+++K Sbjct: 184 MIPRENFRPGDRVRGVLYKVSPESKGAQLFVTRSKPIMLEELFRLEVPEIGEQIIEIKGS 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RD GSRAK+AV SSD IDPVGACVGMRGSRVQ++ EL E++DIV+W + A +VIN Sbjct: 244 ARDAGSRAKIAVKSSDKRIDPVGACVGMRGSRVQSITNELGGERVDIVLWDENPAQYVIN 303 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V+ +V+DED +++ V L+ AIGR GQNVRLA+QLTGWT++++T EE + Sbjct: 304 AMAPADVSSIVVDEDNHSMDIAVEASNLAQAIGRNGQNVRLATQLTGWTLNVMTTEELAQ 363 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DEETAVE 408 Q + N+ FM A+ +DE A +LV EGF +EELA V +SE+ +I+G DE+ E Sbjct: 364 KHQAEDNKILNLFMTALEIDEDFAQILVDEGFTKLEELAYVSVSELTAIDGLEDEDLVEE 423 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 +Q RA++ + + +K + + + L ++ G++ + L E I T+E+LA VD Sbjct: 424 LQTRAKDAITAAALAEEKALENAQIEDRLLNLEGMERHLAFKLAEKQITTLEELAEQGVD 483 Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 DL E ++ +I+ AR + W + Sbjct: 484 DLADIEE-----------------LSAEKAADLIMAAR-NICWFGE 511 >gi|77165586|ref|YP_344111.1| transcription elongation factor NusA [Nitrosococcus oceani ATCC 19707] gi|76883900|gb|ABA58581.1| NusA antitermination factor [Nitrosococcus oceani ATCC 19707] Length = 506 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 212/524 (40%), Positives = 328/524 (62%), Gaps = 23/524 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV+ EK ++++V+ + ++ A R Y ++V I+ TGD FR Sbjct: 2 NKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRS 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EV+E+ ++ Q+ L A RDP+ ++ G V +P+ + FGR+A Q+AKQVI+QKV Sbjct: 62 WEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + ++ ++ E++ G VKR++ GN+I+DLG++ +G++ ++E I RE +RPGDR Sbjct: 122 REAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +VR E RGPQ+++SRT P+ +++LF +EVPEI ++VK +RDPG RAK+AV Sbjct: 182 LRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ IDPVGACVGMRGSRVQAV EL E++DIV+W D A FVINA+ PA V +V+ Sbjct: 242 KTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIVV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q Sbjct: 302 DEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQM 361 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ ++VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L Sbjct: 362 FMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRA 421 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ I + + +EL + ID + AL GI T E+LA +VD+L+ Sbjct: 422 IANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIE------- 474 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G +++ +I+ AR W EK +E + Sbjct: 475 ----------GMNREKAARLIMAARES--WFVSEKQDEETEERQ 506 >gi|312796186|ref|YP_004029108.1| N utilization substance protein A [Burkholderia rhizoxinica HKI 454] gi|312167961|emb|CBW74964.1| N utilization substance protein A [Burkholderia rhizoxinica HKI 454] Length = 491 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 209/508 (41%), Positives = 333/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++++DVV + + ++ A + L+ DIRV I+ E+G+ FR Sbjct: 4 EVLMLVDALAREKNVNKDVVFAALEAALASATKKLFDEDVDIRVSIDRESGEHETFRRWR 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V + ++ +I L AR++DP + G + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 IVPDEAGLQQPDQEILLFEAREQDPDAQLDGYIEEPIPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +I++G+VKR++ GN++V+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEKIMTGSVKRLDKGNLVVESGRVEALLRRDQLIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF EVPEI G++++K+ +RDPG RAK+AV + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEFEVPEIEQGLLEIKSAARDPGVRAKIAVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM+ Sbjct: 304 KHAMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAEKQSQERKVLRDLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + L S+ G+D ++ L E+ I T +DLA +VD+L+ + Sbjct: 424 EEKVENASLE--LKSLEGMDRELLAKLAEHEIHTRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GIDEEAAKALIMKAREH--WF 490 >gi|15836839|ref|NP_297527.1| transcription elongation factor NusA [Xylella fastidiosa 9a5c] gi|9105045|gb|AAF83047.1|AE003877_2 N utilization substance protein A [Xylella fastidiosa 9a5c] Length = 503 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 199/506 (39%), Positives = 321/506 (63%), Gaps = 22/506 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ ++G+ +R Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKSGNYETYRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++ Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + + Sbjct: 303 DEEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM+ + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 363 FMERLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ + Sbjct: 423 LAEEEGLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ----- 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARY 507 G + +I+ AR Sbjct: 478 ----------GMTVQRAAVLILAARA 493 >gi|28198121|ref|NP_778435.1| transcription elongation factor NusA [Xylella fastidiosa Temecula1] gi|71898654|ref|ZP_00680824.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|182680749|ref|YP_001828909.1| transcription elongation factor NusA [Xylella fastidiosa M23] gi|28056181|gb|AAO28084.1| N utilization substance protein A [Xylella fastidiosa Temecula1] gi|71731601|gb|EAO33662.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|182630859|gb|ACB91635.1| NusA antitermination factor [Xylella fastidiosa M23] gi|307579213|gb|ADN63182.1| transcription elongation factor NusA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 503 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 199/506 (39%), Positives = 319/506 (63%), Gaps = 22/506 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ +R Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKNGNYETYRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++ Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + + Sbjct: 303 DEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQLAARRL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 363 FMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ + Sbjct: 423 LAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ----- 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARY 507 G + +I+ AR Sbjct: 478 ----------GMTVQRAAVLILAARA 493 >gi|78485466|ref|YP_391391.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2] gi|78363752|gb|ABB41717.1| NusA antitermination factor [Thiomicrospira crunogena XCL-2] Length = 495 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 197/511 (38%), Positives = 308/511 (60%), Gaps = 24/511 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + ++ EK ++++++ + ++ A R + D RV I+ TGD FR E Sbjct: 4 EVLAVVEIMSNEKGVEKEIIFEAIEAALATATRKSHNDEIDARVSIDRHTGDYETFRRWE 63 Query: 68 VVEEVENYTCQ----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+E+ I A D +P I+ G + +P+ ++FGR+ Q+AKQVIIQKVR Sbjct: 64 VIEDDVEIEDHVGWYIRHMDAVDIEPHIEPGEFIEEPMESIEFGRIGAQTAKQVIIQKVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + E+ ++GEI++G VKR++ G+VI+DLG++ D VI R E I+REN + GDRV Sbjct: 124 EAERKKVVEEYSKRIGEILTGQVKRIDRGDVILDLGDNVDAVIPRSELINRENFKMGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ DV RGPQ+ +SR + +++LF +EVPEI + ++ + + +RD G RAK+AV Sbjct: 184 RAYVQDVSFRPRGPQIFMSRACKEMLMELFKIEVPEIGDDLIDIMSAARDVGLRAKVAVR 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D +DP+GACVGMRG RVQAV EL E+IDI++W + A FVINA+ PA VT +++D Sbjct: 244 ANDPRLDPIGACVGMRGGRVQAVTNELNGERIDIILWDSNDAQFVINAMAPAEVTSIMVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V EQLS AIG+ GQN+RLA++LTGW +++++E + + + + + F Sbjct: 304 EDKHTMDLAVDDEQLSQAIGKNGQNIRLATELTGWELNVMSETDMAAKHETESKGQMDLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + VDE +A +LVAEGF +EE+A V +E+ IEGFDEE ++ RA++ L I Sbjct: 364 VNGLEVDEELAEVLVAEGFTTLEEVAYVPAAEMLEIEGFDEEIVAALKERAKDALLTQAI 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++K +++L + G+ ++ L GI T EDLA D+LL E Sbjct: 424 ANEEKTAMAEPAQDLLDLEGMTEEMAKTLASKGIITQEDLAELGTDELLEIVE------- 476 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D +I+ AR W E Sbjct: 477 ----------MDADAASELILKARAP--WFE 495 >gi|71276363|ref|ZP_00652640.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Dixon] gi|71901435|ref|ZP_00683525.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|170729432|ref|YP_001774865.1| transcription elongation factor NusA [Xylella fastidiosa M12] gi|71162825|gb|EAO12550.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Dixon] gi|71728806|gb|EAO30947.1| Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication [Xylella fastidiosa Ann-1] gi|167964225|gb|ACA11235.1| N utilization substance protein A [Xylella fastidiosa M12] Length = 503 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 199/506 (39%), Positives = 319/506 (63%), Gaps = 22/506 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI--RVEINPETGDISLFRL 65 ELL + D VA EK + R ++ + ++ AA+ Y DI RV I+ + G+ +R Sbjct: 4 ELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRY-QDRDILTRVTIDQKNGNYETYRR 62 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + +E+ QI L A D +++G + + + DFGR++ Q+AKQVI+Q+V Sbjct: 63 WEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQIENPDFGRISAQAAKQVIVQRV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDR 181 REAER + +K++VGE+++G VKRVE GN+ VDLG ++ I +D+ I R+ +RPGDR Sbjct: 123 REAERQQVVDAWKNRVGELVTGVVKRVERGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ +VR E RGPQ+ +SR+ P+FM++LF +EVPE+ G+V++K +RDPG RAK+AV Sbjct: 183 VRGYLAEVRSESRGPQLFISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++ Sbjct: 243 IAHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + + Sbjct: 303 DEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQVAARRL 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + VDE IA +LV EGF +EE+A V + E+ ++EGFDE+ E++ RAR+ L Sbjct: 363 FMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAA 422 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + ++ + G + +L + G+D AL +G++T EDL+ + D+++ + Sbjct: 423 LAEEEVLEHSGPAPDLLELNGMDEITAHALAAHGVRTSEDLSDLAADEIVEFDIQ----- 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARY 507 G + +I+ AR Sbjct: 478 ----------GMTVQRAAVLILAARA 493 >gi|323525724|ref|YP_004227877.1| NusA antitermination factor [Burkholderia sp. CCGE1001] gi|323382726|gb|ADX54817.1| NusA antitermination factor [Burkholderia sp. CCGE1001] Length = 491 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|219682291|ref|YP_002468675.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622024|gb|ACL30180.1| transcription elongation factor NusA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086115|gb|ADP66197.1| transcription elongation factor NusA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086688|gb|ADP66769.1| transcription elongation factor NusA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 496 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 191/510 (37%), Positives = 306/510 (60%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREA Sbjct: 62 WMVVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+II+G VK++ N+++DLGN+ + +I R+ + REN RPGDR++ Sbjct: 122 ERAMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF + Sbjct: 302 CHTMDIAVDVNNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++ Sbjct: 362 NLNINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDK 421 Query: 425 QK-KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 K I+E +EL I G+++ + + L E I T+E+LA +DDL Sbjct: 422 NKMIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDLTDIK--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 473 --------NLNSEQAGLLIMTAR-NICWFS 493 >gi|325981567|ref|YP_004293969.1| NusA antitermination factor [Nitrosomonas sp. AL212] gi|325531086|gb|ADZ25807.1| NusA antitermination factor [Nitrosomonas sp. AL212] Length = 490 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 321/508 (63%), Gaps = 23/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EKS+++++V + + ++ A + + + R+ I+ ETGD FR Sbjct: 4 EILLLVDALAREKSVEKEIVFTALELALSSATKKRFQEDIETRISIDRETGDHQSFRRWL 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + VE+ Q++L A D +I +G + PL P++FGR+ Q+AKQVI QK+REA Sbjct: 64 VVNDDSVEDSARQVALSDAIKIDANIQVGDHLEKPLEPIEFGRIGAQAAKQVIFQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F ++ +I+GT+KR+E GN I++ G + ++RD+ I +ENLR GDRV++Y Sbjct: 124 EREQTLNDFLEREDYLINGTIKRMERGNAIIESGKIEAELQRDQMIPKENLRVGDRVRAY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 +Y V R RGPQ+ LSR P+F++KLF +EVPEI G++++KA +RDPGSRAK+AV S+D Sbjct: 184 LYKVDRAARGPQLKLSRISPEFLMKLFELEVPEIEEGLLEIKAAARDPGSRAKIAVKSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGMRGSRVQAV++EL E++DIV+WS D ATF+INAL PA ++ +++DE+ Sbjct: 244 QRIDPIGTCVGMRGSRVQAVISELAGERVDIVLWSDDPATFIINALAPAEISSIMVDEEK 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++++V + L+ AIGR GQNVRLAS+LTGW ++I+T EE +++ ++ Q FMQ Sbjct: 304 HSMDIVVDDDNLAQAIGRGGQNVRLASELTGWELNIMTIEESKTKHEQETSQICQLFMQK 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VDE IA +L+ EGF +EE+A + ++E+ IE DEET EI+ RAR L I + Sbjct: 364 LDVDEEIAEILMQEGFVSLEEVAYIPLNEMLEIESLDEETVNEIRNRARNVLLTDAIANE 423 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ V+E+L SI G+D I L GI T D Sbjct: 424 EKVE--HVAEDLLSIEGMDINIIRELAAKGIIT-----------------QSDLADLAAD 464 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIE 513 + G + +II AR W Sbjct: 465 DLVEMTGIDIELANQLIIKARAP--WFT 490 >gi|170696460|ref|ZP_02887586.1| NusA antitermination factor [Burkholderia graminis C4D1M] gi|170138613|gb|EDT06815.1| NusA antitermination factor [Burkholderia graminis C4D1M] Length = 491 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 213/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDDYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|209520195|ref|ZP_03268966.1| NusA antitermination factor [Burkholderia sp. H160] gi|209499354|gb|EDZ99438.1| NusA antitermination factor [Burkholderia sp. H160] Length = 491 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPDIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILSDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMGEDAAKALIMKAREH--WF 490 >gi|237746613|ref|ZP_04577093.1| transcription pausing [Oxalobacter formigenes HOxBLS] gi|229377964|gb|EEO28055.1| transcription pausing [Oxalobacter formigenes HOxBLS] Length = 518 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 205/494 (41%), Positives = 317/494 (64%), Gaps = 6/494 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LE+LQ+ DA+A EK++D+++VL + ++ A + Y DIRV I+ ++G++ FR Sbjct: 3 LEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDVDIRVAIDRQSGEVETFRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ ++ A+++ P I++G + D + +D GR Q KQ+++Q++R Sbjct: 63 HVVPDEAGLQQPDQEMLFFEAKEQFPDIEVGDYIEDHVESVDLGRRFAQDTKQIVLQRIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV+ Sbjct: 123 DAEREQILQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRIGDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AV++ Sbjct: 183 AYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVYT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE Sbjct: 243 ADKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + FM Sbjct: 303 DKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKTALEKAELQKLFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VD +A +L+ EGF +EE+A V I+E+ IE FDEET EI+ RAR+ L I Sbjct: 363 EKLDVDSEVADILIEEGFTSLEEIAYVPINEMLDIEAFDEETVNEIRQRARDALITEAIV 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + G+ E L + G+ + LG G+KT+E AG + D+ G + Sbjct: 423 SEEGM--AGMEEALSGLEGMSRSVAGKLGLAGVKTLERFAGLAYDEF-GAILALPVERAR 479 Query: 484 FDGFLSSLGTPKDQ 497 ++ Sbjct: 480 QLLENEFADVTDEE 493 >gi|307730029|ref|YP_003907253.1| transcription termination factor NusA [Burkholderia sp. CCGE1003] gi|307584564|gb|ADN57962.1| transcription termination factor NusA [Burkholderia sp. CCGE1003] Length = 491 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 214/508 (42%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I I + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQIDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|295676260|ref|YP_003604784.1| transcription termination factor NusA [Burkholderia sp. CCGE1002] gi|295436103|gb|ADG15273.1| transcription termination factor NusA [Burkholderia sp. CCGE1002] Length = 491 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 336/508 (66%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P+I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQQPNIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 RHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMGEDAAKALIMKAREH--WF 490 >gi|15616983|ref|NP_240196.1| transcription elongation factor NusA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681736|ref|YP_002468122.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471436|ref|ZP_05635435.1| transcription elongation factor NusA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386974|sp|P57459|NUSA_BUCAI RecName: Full=Transcription elongation protein nusA gi|25299780|pir||B84974 N utilization substance protein A [imported] - Buchnera sp. (strain APS) gi|10039048|dbj|BAB13082.1| N utilization substance protein A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624579|gb|ACL30734.1| transcription elongation factor NusA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087273|gb|ADP67353.1| transcription elongation factor NusA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 496 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 191/510 (37%), Positives = 306/510 (60%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + + DIRV IN +TG + FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALEMALATATKKKHEQEIDIRVSINRKTGGFTTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V T +I+L+ A + + + + + +DF R+ Q+AKQVI+QKVREA Sbjct: 62 WMVVETVTQPTREITLEAACFDGEKVYLNDYIEEQIESVDFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+II+G VK++ N+++DLGN+ + +I R+ + REN RPGDR++ Sbjct: 122 ERAMLVEQFRKYTGQIITGIVKKINRDNIMLDLGNNAEALILREGMLPRENFRPGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V E RG Q+ +SR+ + + +LF +EVPEI ++++KA +RDPGSRAK+AV ++ Sbjct: 182 ILYGVYPEARGAQLFISRSKTEMLTELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV +EL E+IDI++W + A FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSSELCGERIDIILWDDNPAQFVINAMAPADVASIVVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V L+ AIGR GQNVRLASQ++GW ++++T E+ +++ + FF + Sbjct: 302 CHTMDIAVDINNLAQAIGRNGQNVRLASQISGWELNVMTTEDLHSKHKEEAHTAFNFFKK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E I +LV EGF+ +EELA + +E+ ++ E+ A +++ A+ L ++ Sbjct: 362 NLNINENIIKILVKEGFSSLEELAYIPFNELLEVKNLTEDQAKKVREGAKSKLLLMESDK 421 Query: 425 QK-KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 K I+E +EL I G+++ + + L E I T+E+LA +DDL Sbjct: 422 NKMIIQERKTEKELLKINGMNAVLALQLAEKNIFTIEELADQGIDDLTDIK--------- 472 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 +Q +I+ AR + W Sbjct: 473 --------NLNSEQAGLLIMTAR-NICWFS 493 >gi|330816693|ref|YP_004360398.1| NusA antitermination factor [Burkholderia gladioli BSR3] gi|327369086|gb|AEA60442.1| NusA antitermination factor [Burkholderia gladioli BSR3] Length = 491 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 210/508 (41%), Positives = 334/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+VL + ++ A++ L+ ++IRV I+ E+G+ +R Sbjct: 4 EVLMLVDALAREKNVDKDIVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETYRRWL 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ I++G + + +P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDREILLFEAREQKAEIEVGDYIEESVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ ++ ++ +I++GTVKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E IDIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSDDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E ++ + ++ + FM Sbjct: 304 KHSMDVVVDESELAVAIGRSGQNVRLASELTGWQINIMTPDESALKQGEERDRLRSLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDEET E++ RAR+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEETVHELRNRARDALLTMAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ + +L S+ GI ++ L E+ + T +DLA +VD+L+ + Sbjct: 424 EEKVENAAL--DLKSLDGITPELLAKLAEHSVATRDDLAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G ++ +++I+ AR W Sbjct: 472 -------GVEEEAAKALIMKAREH--WF 490 >gi|161572974|ref|YP_208351.2| transcription elongation factor NusA [Neisseria gonorrhoeae FA 1090] gi|240014533|ref|ZP_04721446.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI18] gi|240121055|ref|ZP_04734017.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID24-1] Length = 500 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|297180949|gb|ADI17152.1| transcription elongation factor [uncultured gamma proteobacterium HF0070_08D07] Length = 506 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 205/519 (39%), Positives = 309/519 (59%), Gaps = 30/519 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + D+V+ EK + ++ + + ++ A R YG D RV I+ G FR Sbjct: 4 EILMVVDSVSNEKGVPKETLFEAVELALAVATRKRYGETFDFRVAIDRNDGSYETFRRWT 63 Query: 68 VVEEV-----------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VV+E N ++L A+ +D G V + + + FGR+A Q+AKQ Sbjct: 64 VVDEENMVDEEGEEKEFNPDAHLNLSQAQIKDSESSFGSVFEEQVESVGFGRIAAQTAKQ 123 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISREN 175 VI+QKVREAERD+ + K+ I+SGTVK++ +VIVDLGN+ +G++ R+ I RE Sbjct: 124 VIVQKVREAERDQIAAAYDGKINSIVSGTVKKLGRDSVIVDLGNNAEGILTREHLIPREI 183 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 R GDR+++ + +++ + RGPQ++LSRT Q +V+LF +EVPEI ++Q+ +RDPGS Sbjct: 184 FRVGDRLRAMLVEIKSDNRGPQLMLSRTSRQMLVELFKIEVPEISEDVIQILGAARDPGS 243 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDPVGACVGMRGSRVQAV EL E+IDIV+W + A INA+ PA Sbjct: 244 RAKIAVKTNDGRIDPVGACVGMRGSRVQAVSGELAGERIDIVLWDDNPAQLTINAMAPAE 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +VLDE+ ++V V +E L+ AIGR GQNVRLAS L+GW+++I+TE+E + + + Sbjct: 304 VASIVLDEESHSMDVAVTEENLAQAIGRGGQNVRLASDLSGWSLNIMTEQEAAQKQDDEA 363 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 F++ ++VDE +A LV EGF +EE+A V I E++SIEGFDEE E++ RA++ Sbjct: 364 KSFIDDFIKYLSVDEDVAGALVEEGFTTLEEVAYVPIEELSSIEGFDEEIVSELRDRAKD 423 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L I ++ G +E+L + G+ ++ L N + +MEDLA SV +L+ Sbjct: 424 SLLTKAIADEEANNLAGPNEDLLQMEGMTVELAKILSRNSVSSMEDLAELSVSELIEIEP 483 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + + +I+ AR W E+ Sbjct: 484 ----------------SIDESEGARLIMKAREP--WFEE 504 >gi|119504358|ref|ZP_01626438.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2080] gi|119459866|gb|EAW40961.1| transcription elongation factor NusA [marine gamma proteobacterium HTCC2080] Length = 490 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 201/509 (39%), Positives = 318/509 (62%), Gaps = 23/509 (4%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 +A+AV+ EK + D++ + ++ AA+ Y +DI V I+ +G+ R VV Sbjct: 1 MVAEAVSAEKGVSEDIIFEAIELALATAAKKRYEEEADIEVVIDRVSGEYQTRRRWLVVP 60 Query: 71 EVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + E Q + + A + D ++ IG V + + DFGR+A Q+AKQVI+Q+VR+AER Sbjct: 61 DTELALLGTQFTTEEAAEADANLQIGDVHEEIIENADFGRIAAQTAKQVIVQRVRDAERA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIY 187 + ++D++GE+++G VK+V NVIVDLGN+ +G++ R E + RE R DRV++ + Sbjct: 121 QIVDLYRDRIGELLAGIVKKVTRDNVIVDLGNNAEGLLPRGELVGRETFRINDRVRAILS 180 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 ++ E RGPQ+++SR + + +LF +EVPEI G++Q++A +RDPGSRAK+AV + D Sbjct: 181 EINTESRGPQLVMSRACREMLTELFKIEVPEISEGVIQIRAAARDPGSRAKIAVKTGDQR 240 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGMRGSRVQAV EL +E++DI++W + A VINA+ PA V +V+DED Sbjct: 241 IDPVGACVGMRGSRVQAVSNELDNERVDIILWDDNPAQLVINAMSPAEVESIVVDEDSNT 300 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV V ++ L+ AIGR GQNVRLAS LTGWTI++++ +E ++ + E + FM A++ Sbjct: 301 MEVAVAEDNLAQAIGRGGQNVRLASDLTGWTINVMSTDEAVERQEAEAVEIIETFMNALD 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF ++E+A V + E+ IEGFDE + E++ RA++ L + I ++K Sbjct: 361 VDEDVAVVLVEEGFTTLDEVAYVPLEEMMGIEGFDEAISEELRARAKDALLTMAIATEEK 420 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 + ++ +E+L ++ G++ + GI TMEDLA VDDL+ Sbjct: 421 L-DVEPAEDLLTMDGMERHLAFVFASRGIVTMEDLAEQGVDDLMDIE------------- 466 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +++ +I+ AR W +E+ Sbjct: 467 ----DMTEERAGELIMTARAP--WFAEEE 489 >gi|152995057|ref|YP_001339892.1| NusA antitermination factor [Marinomonas sp. MWYL1] gi|150835981|gb|ABR69957.1| NusA antitermination factor [Marinomonas sp. MWYL1] Length = 496 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 183/512 (35%), Positives = 317/512 (61%), Gaps = 22/512 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + + V+ + ++ AA+ + + IRV I+ TGD +R Sbjct: 4 EILLVVEAVSNEKDVPKQVIFEAVEIALASAAKRRFEEDALIRVSIDQRTGDYKTYRQWH 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E+ ++++ + +++ + IG + + + FGR+A Q+AKQVI+QKVREA Sbjct: 64 IVADEDYSAPAFELTIDDSEEQNLGVPIGEIYEEEVESEVFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + + +KVG+++ G VK+V ++I+DLG + + + +D+ I+RE+ R DR+++ Sbjct: 124 ERAKMVALYTEKVGKLVHGQVKKVTRDSLIIDLGENAEASLPKDQLIARESFRMNDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R + RG Q++LSR P FM++LF +EVPEI +++++ +RDPG RAK+AV ++ Sbjct: 184 LLLEIRDDSRGAQLILSRNAPAFMIELFRLEVPEISEEVIEIRGAARDPGLRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV E+ E++DIV+W + A VINA+ PA V +V+DED Sbjct: 244 DRRIDPIGACVGMRGARVQAVSNEMNGERVDIVLWDDNPAQLVINAMAPAEVDSIVIDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V + L+ AIGR GQNVRLAS LTGW+++++T E+ +Q++ + F+ Sbjct: 304 AHSMDVAVKSDNLAQAIGRNGQNVRLASTLTGWSLNVMTSEDAEAKQQEESQKLIDIFVN 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++D+ +A +V EGF +EE+A + + E+ I+GFDE+ E++ RA+E L + Sbjct: 364 GLDIDDDLAIQMVDEGFTSLEEVAYIPMEEMLDIDGFDEDLVNELRSRAKEALLNQALQA 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ + + +L ++ G+D+ + + L G+ TMEDLA SVD+L Sbjct: 424 EEQLDDAKPAADLLAMEGMDNHLALVLASMGVITMEDLAEQSVDEL-------------- 469 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 LS G +++ +I+ AR W + + Sbjct: 470 ---LSVEGMTEERAGRLILTARAP--WFTESE 496 >gi|293398726|ref|ZP_06642902.1| N utilization substance protein A [Neisseria gonorrhoeae F62] gi|59718534|gb|AAW89939.1| putative N utilisation substance protein A [Neisseria gonorrhoeae FA 1090] gi|291610866|gb|EFF39965.1| N utilization substance protein A [Neisseria gonorrhoeae F62] Length = 505 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|268597521|ref|ZP_06131688.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|268601718|ref|ZP_06135885.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|268604051|ref|ZP_06138218.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|268682510|ref|ZP_06149372.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|268686952|ref|ZP_06153814.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] gi|268551309|gb|EEZ46328.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|268585849|gb|EEZ50525.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|268588182|gb|EEZ52858.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|268622794|gb|EEZ55194.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|268627236|gb|EEZ59636.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] Length = 503 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 187 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 246 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 307 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 367 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 480 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503 >gi|91782988|ref|YP_558194.1| transcription elongation factor NusA [Burkholderia xenovorans LB400] gi|296158771|ref|ZP_06841600.1| NusA antitermination factor [Burkholderia sp. Ch1-1] gi|91686942|gb|ABE30142.1| NusA antitermination factor [Burkholderia xenovorans LB400] gi|295890976|gb|EFG70765.1| NusA antitermination factor [Burkholderia sp. Ch1-1] Length = 491 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVHIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEYIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L + I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTLAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|34496916|ref|NP_901131.1| transcription elongation factor NusA [Chromobacterium violaceum ATCC 12472] gi|34102772|gb|AAQ59136.1| N utilization substance transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 492 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 212/510 (41%), Positives = 325/510 (63%), Gaps = 24/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L + DA+A EK++ +DVV S + ++ A + + D+RVEI+ TG FR Sbjct: 4 EILLLVDALASEKNVSKDVVFSALEMALASATKKKFTDDEMDVRVEIDRHTGQYQTFRRW 63 Query: 67 EVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+ +E+ + +I L ARDRDP I++G + +P+ ++FGR+ Q+AKQVI+Q++R+ Sbjct: 64 LVVEDELLESESKEIGLIDARDRDPRIELGAFIEEPMEAVEFGRIGAQTAKQVILQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ EF + ++ GT+KR+E GN IV+ G + V+ RD+ I +ENLR GDRVK+ Sbjct: 124 AEREQLLNEFLQRREHLVIGTIKRIERGNAIVECGKLEAVLPRDQMIPKENLRVGDRVKA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + R+ RGPQ++LSRT P+F+VKLF +EVPEI G+++++A RDPG RAK+AV ++ Sbjct: 184 YLLRIDRQGRGPQLILSRTAPEFLVKLFELEVPEIEEGMLEIRAAVRDPGMRAKIAVKAN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ IDP G C+GMRGSRVQAV EL E++DIV+W+P+ A FVINAL PA V+++++DED Sbjct: 244 DARIDPQGTCIGMRGSRVQAVTQELAGERVDIVLWAPEPAQFVINALSPAEVSRIMVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++VIV +EQL+LAIGR GQNV+LA++LTGW ++I+T E Q + Q F+ Sbjct: 304 NHSMDVIVEEEQLALAIGRSGQNVKLAAELTGWYLNIMTVAEAEEKHQAEDAALRQLFVS 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A++VDE A LV EGFA +EE+A V + E+ IEGF+EE E++ RAR+ L I Sbjct: 364 ALSVDEDTAAKLVEEGFAALEEVAYVPLEEMLEIEGFNEELVGELRSRARDALLTQAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ V+++L + G+D+++ L G+ T Sbjct: 424 EEQVE--NVADDLKDVEGLDAELVRKLAAGGVTTR-----------------DDLADLAV 464 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 D + G + ++I+ AR W + Sbjct: 465 DDLVDMTGMEAEAARAIIMKAREH--WFNQ 492 >gi|194099046|ref|YP_002002127.1| transcription elongation factor NusA [Neisseria gonorrhoeae NCCP11945] gi|254494079|ref|ZP_05107250.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291] gi|268595172|ref|ZP_06129339.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|268599676|ref|ZP_06133843.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|268684674|ref|ZP_06151536.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] gi|193934336|gb|ACF30160.1| transcription elongation factor NusA [Neisseria gonorrhoeae NCCP11945] gi|226513119|gb|EEH62464.1| transcription elongation factor NusA [Neisseria gonorrhoeae 1291] gi|268548561|gb|EEZ43979.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|268583807|gb|EEZ48483.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|268624958|gb|EEZ57358.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] gi|317164606|gb|ADV08147.1| transcription elongation factor NusA [Neisseria gonorrhoeae TCDC-NG08107] Length = 503 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 187 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 246 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 307 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 367 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 480 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503 >gi|304386889|ref|ZP_07369151.1| transcription termination/antitermination protein NusA [Neisseria meningitidis ATCC 13091] gi|304339048|gb|EFM05140.1| transcription termination/antitermination protein NusA [Neisseria meningitidis ATCC 13091] Length = 503 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 212/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 7 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 66 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 67 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 126 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 127 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 186 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 187 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 246 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 247 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 306 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 307 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 366 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 367 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 426 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ + Sbjct: 427 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 480 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 481 -------------GVNEETAKAVILTAREH--WFTEDK 503 >gi|153207276|ref|ZP_01946040.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat Q177'] gi|154706434|ref|YP_001423972.1| transcription elongation factor NusA [Coxiella burnetii Dugway 5J108-111] gi|165918786|ref|ZP_02218872.1| transcription termination factor NusA [Coxiella burnetii RSA 334] gi|212212197|ref|YP_002303133.1| transcription elongation factor NusA [Coxiella burnetii CbuG_Q212] gi|212218228|ref|YP_002305015.1| transcription elongation factor NusA [Coxiella burnetii CbuK_Q154] gi|120576764|gb|EAX33388.1| transcription termination factor NusA [Coxiella burnetii 'MSU Goat Q177'] gi|154355720|gb|ABS77182.1| N utilization substance protein A [Coxiella burnetii Dugway 5J108-111] gi|165917510|gb|EDR36114.1| transcription termination factor NusA [Coxiella burnetii RSA 334] gi|212010607|gb|ACJ17988.1| N utilization substance protein A [Coxiella burnetii CbuG_Q212] gi|212012490|gb|ACJ19870.1| N utilization substance protein A [Coxiella burnetii CbuK_Q154] Length = 503 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 207/520 (39%), Positives = 327/520 (62%), Gaps = 27/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61 Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+A Q AKQVI+Q Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAAQQAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 KVREAER + +++ +VGE++ G VKRV ++I+D+G + + ++ R+E I RE R Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181 Query: 180 DRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+Y + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ + Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKI 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + ++I+ AR W +E+ Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEESE 501 >gi|134095611|ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans] gi|133739514|emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Herminiimonas arsenicoxydans] Length = 519 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 203/493 (41%), Positives = 317/493 (64%), Gaps = 6/493 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+LQ+ DA+A EK++D D+V + ++ +A + Y DIRV I+ +TG+ FR Sbjct: 4 EILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I A+++ I++ + +P+ ++FGR Q KQV++Q++R+ Sbjct: 64 VVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++ Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRILFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V I E+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + G+ E L ++ G+D + LG G+KT++ AG + D+ G + + Sbjct: 424 EEGME--GMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEF-GAILALPTDRARH 480 Query: 485 DGFLSSLGTPKDQ 497 ++ Sbjct: 481 LIENEFKDVTDEE 493 >gi|240016979|ref|ZP_04723519.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA6140] gi|240081421|ref|ZP_04725964.1| transcription elongation factor NusA [Neisseria gonorrhoeae FA19] gi|240116051|ref|ZP_04730113.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID18] gi|240118338|ref|ZP_04732400.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID1] gi|240123886|ref|ZP_04736842.1| transcription elongation factor NusA [Neisseria gonorrhoeae PID332] gi|240128559|ref|ZP_04741220.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-93-1035] gi|260440135|ref|ZP_05793951.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] Length = 500 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|239999349|ref|ZP_04719273.1| transcription elongation factor NusA [Neisseria gonorrhoeae 35/02] gi|240113616|ref|ZP_04728106.1| transcription elongation factor NusA [Neisseria gonorrhoeae MS11] gi|240126085|ref|ZP_04738971.1| transcription elongation factor NusA [Neisseria gonorrhoeae SK-92-679] Length = 500 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325204603|gb|ADZ00057.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240355] Length = 500 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 212/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|187923623|ref|YP_001895265.1| transcription elongation factor NusA [Burkholderia phytofirmans PsJN] gi|187714817|gb|ACD16041.1| NusA antitermination factor [Burkholderia phytofirmans PsJN] Length = 491 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 212/508 (41%), Positives = 335/508 (65%), Gaps = 24/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+DVV + + ++ A++ L+ +DIRV+I+ E+G+ FR + Sbjct: 4 EVLMLVDALAREKNVDKDVVFAALEAALASASKKLFEEDADIRVQIDRESGEHETFRRWK 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I L AR++ P I + + +P+P ++FGR+ Q+AKQVI+QKVR+ Sbjct: 64 VVPDEAGLQEPDQEILLFEAREQKPEIQLDEFIEEPVPSIEFGRIGAQAAKQVILQKVRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ I++G+VKR++ GN IV+ G + ++RRD+ I +ENLR GDRV++ Sbjct: 124 AEREQILNDFLERGEHIMTGSVKRLDKGNFIVETGRVEALLRRDQLIPKENLRVGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQ+ LSRT P+F++KLF MEVPEI G++++KA +RDPG RAK+ V + Sbjct: 184 YIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVVAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVG+RGSRVQAV EL E +DIV+WS D A FVI AL PA V +V+DE+ Sbjct: 244 DKRIDPIGTCVGIRGSRVQAVRNELGGENVDIVLWSEDPAQFVIGALAPAAVQSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V + +L++AIGR GQNVRLAS+LTGW I+I+T +E + + ++ FM Sbjct: 304 KHSMDVVVDENELAVAIGRSGQNVRLASELTGWQINIMTPDESAQKQNQERGVLRDLFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ R+R+ L I Sbjct: 364 RLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRSRDALLTQAIAN 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K+ V+ +L S+ G+D+ + L E+ I+T ++LA +VD+L+ + Sbjct: 424 EEKVE--NVALDLKSLDGMDADLLAKLAEHQIQTRDELAELAVDELVEMT---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 G +D +++I+ AR W Sbjct: 472 -------GMEEDAAKALIMKAREH--WF 490 >gi|325205639|gb|ADZ01092.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M04-240196] Length = 500 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 210/518 (40%), Positives = 325/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325136708|gb|EGC59308.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M0579] Length = 500 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 212/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|15677491|ref|NP_274647.1| transcription elongation factor NusA [Neisseria meningitidis MC58] gi|7226892|gb|AAF41991.1| N utilization substance protein A [Neisseria meningitidis MC58] gi|319410895|emb|CBY91289.1| transcription elongation protein nusA (N utilization substance protein A; L factor) [Neisseria meningitidis WUE 2594] gi|325140713|gb|EGC63227.1| transcription termination/antitermination protein nusA [Neisseria meningitidis CU385] gi|325144892|gb|EGC67179.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240013] gi|325199764|gb|ADY95219.1| transcription termination/antitermination protein nusA [Neisseria meningitidis H44/76] Length = 500 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|160898430|ref|YP_001564012.1| NusA antitermination factor [Delftia acidovorans SPH-1] gi|160364014|gb|ABX35627.1| NusA antitermination factor [Delftia acidovorans SPH-1] Length = 495 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 201/512 (39%), Positives = 320/512 (62%), Gaps = 24/512 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + +A++ EK+++RD+V + ++ +A + LY DIRV I+ ++G+ FR Sbjct: 2 NRELLMLVEAISREKNVERDLVFGAVESALAQATKKLYQGEVDIRVAIDRDSGNYDTFRR 61 Query: 66 LEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + ++N + L A+DR P I G + + + + GR+ +AKQVI+QK+ Sbjct: 62 WLVVPDDAGLQNPDAEEMLMDAQDRVPGISEGEYIEEEIESVPIGRIGAMAAKQVILQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER+ EF + I +GTVKR++ G++IV+ G +G +RR+E I +ENLR GDRV Sbjct: 122 RDAEREMLLNEFLSRGDRIFTGTVKRMDKGDIIVEAGRVEGRLRRNEMIPKENLRNGDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V RG ++LSR+ P+FMV+LF EVPEI G++++K+ +RD GSRAK+AV Sbjct: 182 RAMIMEVDATLRGAPIILSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDSGSRAKIAVL 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DP+G CVG+RG+RV AV EL E++DIV+WS D A FVI AL PA V+ +V+D Sbjct: 242 SHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+ E + + + Q F Sbjct: 302 EEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVARQLF 361 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+ ++VDE IA++L+ EGF +EE+A V + E+ IE FDEET E++ RA++ L +I Sbjct: 362 MEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIEAFDEETVNELRTRAKDALLTQEI 421 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + VS++L ++ G+ +I L E + T +DLA ++D+L + Sbjct: 422 AHEENVG--KVSQDLLTLEGMTPEIVDKLAEADVHTRDDLADLAIDELTELTGQ------ 473 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 +++ +++I+ AR W + Sbjct: 474 -----------TEEEAKALIMKAREH--WFTE 492 >gi|291043424|ref|ZP_06569145.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] gi|291012660|gb|EFE04645.1| transcription elongation factor NusA [Neisseria gonorrhoeae DGI2] Length = 505 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPDTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V Q++LSRT F+VKL+ EVPEI G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQIILSRTSGDFLVKLYANEVPEIAGGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV +++L+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVAEDRLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMNHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + ++L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGVDADMLLSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|29654724|ref|NP_820416.1| transcription elongation factor NusA [Coxiella burnetii RSA 493] gi|81628742|sp|Q83BS0|NUSA_COXBU RecName: Full=Transcription elongation protein nusA gi|29541992|gb|AAO90930.1| N utilization substance protein A [Coxiella burnetii RSA 493] Length = 503 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 208/520 (40%), Positives = 328/520 (63%), Gaps = 27/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61 Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+Q Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 KVREAER + +++ +VGE++ G VKRV ++I+D+G + + ++ R+E I RE R Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181 Query: 180 DRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+Y + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ + Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGKI 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + ++I+ AR W +E+ Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEESE 501 >gi|261400895|ref|ZP_05987020.1| transcription termination/antitermination protein NusA [Neisseria lactamica ATCC 23970] gi|269209254|gb|EEZ75709.1| transcription termination/antitermination protein NusA [Neisseria lactamica ATCC 23970] Length = 500 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD Sbjct: 124 RDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG RAK Sbjct: 184 RIRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GIDEETAKAVILTAREH--WFTEDK 500 >gi|261392135|emb|CAX49635.1| transcription elongation protein nusA (N utilization substance protein A; L factor) [Neisseria meningitidis 8013] gi|325134692|gb|EGC57331.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M13399] Length = 500 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|27904831|ref|NP_777957.1| transcription elongation factor NusA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340243|sp|Q89AF4|NUSA_BUCBP RecName: Full=Transcription elongation protein nusA gi|27904229|gb|AAO27062.1| N utilization substance protein A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 497 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 185/508 (36%), Positives = 313/508 (61%), Gaps = 19/508 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ R+ + + ++ A + Y D+RV+IN + G+ FR Sbjct: 2 NKEILAVVEAVSNEKSLPREKIFEALECALAIATKKKYDQEIDVRVKINRKNGNFETFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +V T +I+L+ A+ D ++ + + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVNQVLQPTKEITLEAAKFEDVTVKVNDYIEDKMISVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F+ G+I++G VK++ ++ +DLGN+ + +I +++ + REN R GDRV+ Sbjct: 122 ERAMIVEQFRKYFGKILTGIVKKINRESITLDLGNNAEALILKEDMLPRENFRLGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y + E RG Q+ ++R+ P+ +++LF +EVPEI I+++K+ +RDPGSRAK+AV S+ Sbjct: 182 VLYAIYPESRGAQLFVTRSKPEMLIELFKIEVPEIGEEIIEIKSAARDPGSRAKIAVKSN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +D VGACVGMRG+RVQAV +EL E+IDIV+W +SA F+IN++ PA V+ +VLDED Sbjct: 242 DKRVDAVGACVGMRGARVQAVSSELCGERIDIVLWDKNSAQFIINSMAPAEVSSIVLDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 I++ V L+ AIGR GQNVRLASQL+GW I+++T ++ + Q++ ++ F + Sbjct: 302 RHTIDIAVDSNNLAQAIGRNGQNVRLASQLSGWEINVMTVDDLKLKHQEEKDKILNIFTK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + +D+ I+++L+ EGF+ +EEL + +E+ +I +E A I+ A++ L I++ Sbjct: 362 YLKIDQKISNILIDEGFSSIEELVYIPFNELLNINSITQELAYSIRESAKKALCAIELEN 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +K I E + ++L ++ G++ K+ L + I ++EDLA +DDL+ Sbjct: 422 KKVINERKLHKDLLNLKGMNQKLAFKLAKKNIFSLEDLAEQGIDDLIDIE---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 + +I+ AR + W Sbjct: 472 -------NLNSNTAGMLIMAAR-NICWF 491 >gi|110833189|ref|YP_692048.1| transcription elongation factor [Alcanivorax borkumensis SK2] gi|110646300|emb|CAL15776.1| transcription elongation factor [Alcanivorax borkumensis SK2] Length = 525 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 204/520 (39%), Positives = 324/520 (62%), Gaps = 24/520 (4%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISL 62 A E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ E+G+ Sbjct: 23 AMNKEILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRESGNARS 82 Query: 63 FRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR+ VV + E + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+Q Sbjct: 83 FRVWHVVPDEELFEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQ 142 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 KVREAER + E++D++G+++SGTVK+ ++++DLG + + +I R+ I RE +R Sbjct: 143 KVREAERRQIVEEYRDRIGDLVSGTVKKASRDSIVLDLGGNAEALITREHMIPREAVRQN 202 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRV++Y+ V E RGPQ+ SR P +V+LF +EVPEI ++++K +RDPGSRAK+ Sbjct: 203 DRVRAYLLGVNEENRGPQLFASRACPDMLVELFKIEVPEIGEELIEIKGAARDPGSRAKI 262 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V + Sbjct: 263 AVKTNDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASI 322 Query: 300 VLDEDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+DE+ +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Sbjct: 323 VMDEESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAESKQEQEAEQA 382 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 Q F+ + VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L Sbjct: 383 LQTFINELEVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALL 442 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + ++K + +E+L ++ G+D ++ V L I TMEDLA +VDDLL Sbjct: 443 TKALVSEEKFDQAEPAEDLLNMEGMDRELAVELASRDIVTMEDLAEQAVDDLLEIE---- 498 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G +++ +I+ AR W E E A Sbjct: 499 -------------GLSEERAAELIMTARAP--WFEGEDEA 523 >gi|261856064|ref|YP_003263347.1| NusA antitermination factor [Halothiobacillus neapolitanus c2] gi|261836533|gb|ACX96300.1| NusA antitermination factor [Halothiobacillus neapolitanus c2] Length = 491 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 218/509 (42%), Positives = 321/509 (63%), Gaps = 24/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +ADAV+ EK +DR+V+ + ++ +AAR +G D RV+I+ ETGD FR + Sbjct: 4 EILFVADAVSNEKGVDREVIFEAIEAALAQAARKRHGGDIDTRVQIDHETGDYRTFRRWQ 63 Query: 68 VVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE E ++ L+ A+ DP I +G V + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEGDSSEFPEREMILEAAQMDDPDIKVGEFVEEEIESVEFGRIAAQAAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + + D+ G +I G +KR++ GNVI+DLG + + +I RDE I RE +RPGDR++ Sbjct: 124 ERRQIVDAYIDRKGSLIMGLIKRIDRGNVILDLGGNVEALIPRDEMIGREAVRPGDRLRG 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DVR E RGPQ+ +SRT PQF+++LF +EVPEI G++++K +RDPG RAK+AV S Sbjct: 184 YLADVRHEPRGPQLFVSRTAPQFLIELFKLEVPEIEQGLIEIKGAARDPGLRAKIAVESR 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DS IDPVG CVGMRGSRVQ+V EL E++DI++W + A FVINA+ PA V +V+DED Sbjct: 244 DSRIDPVGTCVGMRGSRVQSVTNELNGERVDIIIWDSNPAQFVINAMSPAEVVSIVVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V V +E+LS AIGR GQNVRLASQLTGW ++++ EEE + + T+ FM+ Sbjct: 304 RHSMDVAVTEEKLSQAIGRGGQNVRLASQLTGWHLNVMGEEEAVAKVETETRRATEAFMR 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VDE +A +LV GF+ +EE+A V +E+ +EGFDE E++ RAR+ L I+ Sbjct: 364 DLDVDEDVAAVLVEAGFSSLEEIAYVPTAELLDVEGFDEGIVEELRNRARDALLVQAISD 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 E ++ + G+ ++ L G+ T +DLA SVD++ + Sbjct: 424 DA--GESTEELDIAQLEGMTPELLTILNAAGVHTSDDLAELSVDEMTAFD---------- 471 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + + +I+ AR W Sbjct: 472 -------GVDEALAQQLIMAARAP--WFA 491 >gi|325130689|gb|EGC53429.1| transcription termination/antitermination protein nusA [Neisseria meningitidis OX99.30304] Length = 500 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALAGEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|218768664|ref|YP_002343176.1| transcription elongation factor NusA [Neisseria meningitidis Z2491] gi|121052672|emb|CAM09013.1| N utilisation substance protein A [Neisseria meningitidis Z2491] Length = 505 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|313667982|ref|YP_004048266.1| N utilisation substance protein A [Neisseria lactamica ST-640] gi|313005444|emb|CBN86879.1| N utilisation substance protein A [Neisseria lactamica 020-06] Length = 500 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 209/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GD Sbjct: 124 RDAEREQNLNEFLATREDIVAGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G++++++V+RDPG RAK Sbjct: 184 RIRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRSVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VSE++ ++ G+D+ + L E GI T +DLA SVD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSEDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GIDEETAKAVILTAREH--WFTEDK 500 >gi|309378387|emb|CBX22988.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 496 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 208/517 (40%), Positives = 322/517 (62%), Gaps = 30/517 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ G D+RV+I+ +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKAGREHMDVRVQIDRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDIEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I++GTVKRVE +IV++ G D +I RD++I REN R GDR Sbjct: 121 DAEREQNLNEFLATREDIVTGTVKRVERHGIIVEVVAGKLDALIPRDQSIPRENFRSGDR 180 Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG RAK+ Sbjct: 181 IRALFQRVEEIGNTGRKQVILSRTSADFLAKLYANEVPEISDGLLEIRAVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP A FV++AL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPKPAQFVMSALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VS+++ ++ G+D+ + L E GI T +DLA SVD+L+ + Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGVDADMLRNLAEAGITTRDDLAELSVDELIEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 474 ------------GIDEETAKAVILTAREH--WFTEDK 496 >gi|237748745|ref|ZP_04579225.1| transcription elongation protein [Oxalobacter formigenes OXCC13] gi|229380107|gb|EEO30198.1| transcription elongation protein [Oxalobacter formigenes OXCC13] Length = 519 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 205/494 (41%), Positives = 316/494 (63%), Gaps = 6/494 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LE+LQ+ DA+A EK++D+++VL + ++ A + Y +DIRV I+ TG++ FR Sbjct: 3 LEILQLVDALAREKNVDKEIVLGALEHALALATKKRYPGDADIRVSIDRTTGEVETFRRW 62 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV + ++ ++ A+++ P I++ + D + +D GR Q KQ+++Q++R Sbjct: 63 HVVPDEAGLQQPDQEMLYFEAKEQFPDIEVDDYIEDHIESIDLGRRFAQDTKQIVLQRIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AER++ +F D+ +++GTVKR+E G+ IV+ G + + R++ I +ENLR GDRV+ Sbjct: 123 DAEREQVLQDFLDRGDSLVTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRVGDRVR 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V R RGPQV+LSRT P+F+VKLF +EVPEI G++++K+ +RDPG RAK+AVF+ Sbjct: 183 AYILRVERGARGPQVILSRTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVFT 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE Sbjct: 243 SDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D ++VIV +E L++AIGR GQNVRLA++LTGW I+I+T EE + + E + FM Sbjct: 303 DKHAMDVIVDEENLAIAIGRSGQNVRLATELTGWKINIMTAEESADKSALEKAELQKLFM 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + ++VD+ +A +L+ EGF +EE+A V I E+ IE FDE+T EI+ RAR+ L I Sbjct: 363 ERLDVDQEVADILIEEGFTALEEIAYVPIGEMLEIEAFDEDTVNEIRQRARDALITEAIA 422 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++ + + L ++ G+D ++ LG G+KT++ A + D+ G + Sbjct: 423 SEEGMAGMEEE--LVNLEGMDRQVAGKLGLAGVKTLQRFAELAYDEF-GAILALPVERAR 479 Query: 484 FDGFLSSLGTPKDQ 497 D+ Sbjct: 480 QLLENEFADVTDDE 493 >gi|325132774|gb|EGC55456.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M6190] Length = 500 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325198741|gb|ADY94197.1| transcription termination/antitermination protein nusA [Neisseria meningitidis G2136] Length = 500 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 324/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNIGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|161830897|ref|YP_001597277.1| transcription elongation factor NusA [Coxiella burnetii RSA 331] gi|161762764|gb|ABX78406.1| transcription termination factor NusA [Coxiella burnetii RSA 331] Length = 503 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 208/520 (40%), Positives = 329/520 (63%), Gaps = 27/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFR 64 ++L I D+++ E+ + ++V+ + ++ Y IRV I+ +TGD FR Sbjct: 2 NKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESFR 61 Query: 65 LLEVVEE----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 VVE+ +E +++LK AR+ D +++G V+ +P+ + FGR+AVQ AKQVI+Q Sbjct: 62 CWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 KVREAER + +++ +VGE++ G VKRV ++I+D+G + + ++ R+E I RE R Sbjct: 122 KVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRIN 181 Query: 180 DRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+++Y+Y + ++RGPQ+L+SRT P+F+V+LF +EVPEI ++++K +RDPGSRAK Sbjct: 182 DRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRAK 241 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP+GACVGMRGSRVQAV EL E+IDIV+W + A VINA+ PA V Sbjct: 242 IAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVAS 301 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED +++ V K+QLS AIGR GQNVRLAS+LTGWT+++++E E + +K+ ++ Sbjct: 302 IVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEADKI 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 FM+ ++VDE +A LV GF ++EE+A V E+ +EGFDE+ + E+Q RA + L Sbjct: 362 KTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVLL 421 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 +I Q+ + E +E+L ++PG+ +++ L EN + T +DLA SV DL E Sbjct: 422 TQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIE--- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 + ++I+ AR W +E+ Sbjct: 478 --------------IDDEAAANLIMAARAH--WFAEEESE 501 >gi|152980158|ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille] gi|151280235|gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille] Length = 519 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 204/492 (41%), Positives = 315/492 (64%), Gaps = 5/492 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ ETG+ FR Sbjct: 4 EILLLVDALAREKNVDKDIVFGALEHALAQATKKRYEGDVDIRVSIDRETGEFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I A+++ I++ + +P+ +DFGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEILHFEAKEQIGDIEVDDYIEEPIESVDFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+TI +ENLR GDRV++ Sbjct: 124 AEREQILADFLERGDSLVTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI + R RGPQV+LSRT P+F++KLF +EVPEI G++++K+ +RD G RAK+AVF+S Sbjct: 184 YILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLAS+LTGW I+I+T EE + Q + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + G+ E L ++ G+D + LG GIKT+ + + D+ + Sbjct: 424 EEGLE--GMEEALANLEGMDRVMAGKLGLAGIKTLAAFSALAYDEFGAILALPADRARQL 481 Query: 485 DGFLSSLGTPKD 496 T ++ Sbjct: 482 IEDEFKDVTDEE 493 >gi|325128688|gb|EGC51554.1| transcription termination/antitermination protein nusA [Neisseria meningitidis N1568] Length = 500 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRCGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|325142812|gb|EGC65183.1| transcription termination/antitermination protein nusA [Neisseria meningitidis 961-5945] gi|325201699|gb|ADY97153.1| transcription termination/antitermination protein nusA [Neisseria meningitidis M01-240149] gi|325208565|gb|ADZ04017.1| transcription termination/antitermination protein nusA [Neisseria meningitidis NZ-05/33] Length = 500 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|254805397|ref|YP_003083618.1| N utilization substance protein A [Neisseria meningitidis alpha14] gi|254668939|emb|CBA07185.1| N utilization substance protein A [Neisseria meningitidis alpha14] Length = 500 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNESFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTEDK 500 >gi|316984984|gb|EFV63938.1| transcription elongation protein nusA [Neisseria meningitidis H44/76] Length = 496 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 210/517 (40%), Positives = 323/517 (62%), Gaps = 30/517 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GDR Sbjct: 121 DAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDR 180 Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+ Sbjct: 181 IRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 474 ------------GVNEETAKAVILTAREH--WFTEDK 496 >gi|121635282|ref|YP_975527.1| transcription elongation factor NusA [Neisseria meningitidis FAM18] gi|120866988|emb|CAM10751.1| N utilisation substance protein A [Neisseria meningitidis FAM18] Length = 505 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 211/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 69 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 128 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 129 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 188 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 189 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 248 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 249 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 308 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 309 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 368 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 369 RRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 428 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 429 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 482 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 483 -------------GVNEETAKAVILTAREH--WFTEDK 505 >gi|161870486|ref|YP_001599658.1| transcription elongation factor NusA [Neisseria meningitidis 053442] gi|161596039|gb|ABX73699.1| N utilisation substance protein A [Neisseria meningitidis 053442] Length = 496 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 210/517 (40%), Positives = 324/517 (62%), Gaps = 30/517 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 1 MLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGIAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GDR Sbjct: 121 DAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDR 180 Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+ Sbjct: 181 IRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + Sbjct: 301 VIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADERNAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 RLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 421 MAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 474 ------------GVNEETAKAVILTAREH--WFTEDK 496 >gi|289825801|ref|ZP_06544969.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 472 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 192/482 (39%), Positives = 297/482 (61%), Gaps = 24/482 (4%) Query: 40 RSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSD 99 + Y D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D Sbjct: 8 KKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVED 67 Query: 100 PLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL- 158 + + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++ Sbjct: 68 QIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIK 127 Query: 159 -----GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF Sbjct: 128 SEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFR 187 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+ Sbjct: 188 IEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGER 247 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQ Sbjct: 248 IDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQ 307 Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 L+GW ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + Sbjct: 308 LSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMK 367 Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 E+ I+G DE T ++ RA+ L + + + + +++L ++ G+D + L Sbjct: 368 ELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAA 427 Query: 454 NGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G+ T+EDLA +DDL G ++ +I+ AR + W Sbjct: 428 RGVCTLEDLADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFG 469 Query: 514 KE 515 E Sbjct: 470 DE 471 >gi|261379110|ref|ZP_05983683.1| L Factor [Neisseria cinerea ATCC 14685] gi|269144431|gb|EEZ70849.1| L Factor [Neisseria cinerea ATCC 14685] Length = 500 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 208/518 (40%), Positives = 320/518 (61%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EILQLAEALASEKNVDAEVVFQALEFALSSAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDIEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I++GTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVTGTVKRVERHGIIVEIIAGKLDALIPRDQAIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEISDGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV+ AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMGALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DE+ ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E + Sbjct: 304 IVIDEEKHAVDVIVSEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEADKRNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RTLFVSHLNVDEETADILVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VS+++ S+ G+D+ + + L E I T +DLA SVD+L+ + Sbjct: 424 TIAIAAEEKLGE--VSDDMRSLEGVDADMLLKLAEADITTRDDLAELSVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W + K Sbjct: 478 -------------GVNEETAKAVILTAREH--WFTENK 500 >gi|288940250|ref|YP_003442490.1| NusA antitermination factor [Allochromatium vinosum DSM 180] gi|288895622|gb|ADC61458.1| NusA antitermination factor [Allochromatium vinosum DSM 180] Length = 499 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 193/508 (37%), Positives = 306/508 (60%), Gaps = 25/508 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +AV+ EK + V+ + ++ A R +G D+RV I+ +TG FR E Sbjct: 4 EILNVVEAVSNEKDVPEGVIFEAIEAALASATRKKHGGEIDVRVTIDRKTGSYRTFRRWE 63 Query: 68 VVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V + E+ QI+ A +P + IG + + + FGR+A Q+AKQVI+QKV Sbjct: 64 IVSDPESGMLEAPARQITASAAAILEPELSIGDFMEEEIESELFGRIAAQTAKQVIVQKV 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 R+AER + F + G++++G VK+ E G +++DLGN+ + ++ RD I RE++RPGDR Sbjct: 124 RDAERAKIVDAFASRQGQLVTGIVKKAERGTILLDLGNNAEALVPRDHVIPRESVRPGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+YDVR EQ+GPQ+ +SRT P+ +++LF +EVPE+ G++++ +RDPG RAK+AV Sbjct: 184 LRGYLYDVRSEQKGPQLFVSRTAPELLIELFKLEVPEVGEGLIEILGAARDPGVRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVGMRGSRVQAV EL E++DI++W + A FVINA+ PA V +V+ Sbjct: 244 RTRDPRIDPVGACVGMRGSRVQAVSNELNGERVDIILWDENPAQFVINAMSPADVVSIVI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ ++V V +E L+ AIGR GQNVRLA+QL+GW ++++ E++ + +++ Q Sbjct: 304 DEEARSMDVAVKEENLAQAIGRFGQNVRLATQLSGWELNVMNEKDAAAKSEQEARRSAQV 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 FM + +DE +A LLV EGF+ V+E+A V + E+ +I+ D+ET ++ RA + L Sbjct: 364 FMDQLGIDEGLATLLVEEGFSSVDEVAYVPLDEMRAIDELDDETIELLRERANDVLVTRA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 I ++ G+S L ++ G+D + L E GI T Sbjct: 424 IATEEVDEVGGMS--LSALEGMDEALVEVLAERGIAT-----------------LDDLAD 464 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKM 509 D + G +++ +I+ AR M Sbjct: 465 LAVDDLMEIEGMDEERAARLIMKAREPM 492 >gi|157825875|ref|YP_001493595.1| transcription elongation factor NusA [Rickettsia akari str. Hartford] gi|157799833|gb|ABV75087.1| transcription elongation factor NusA [Rickettsia akari str. Hartford] Length = 503 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 358/511 (70%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILVSTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+V++Y QISL A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVQDYLTQISLAEALRKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I+ EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLINGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGSRAK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKIEVPEILEDIIQIKSVARDPGSRAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFVT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 TQ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STQLFMEALDVEEVIGQLLSVTGFNSVEQIASSEVSTLTRIEGFEEELAVEIKNRAVNYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILALPLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARRH 497 >gi|319944110|ref|ZP_08018388.1| N utilization substance A [Lautropia mirabilis ATCC 51599] gi|319742604|gb|EFV95013.1| N utilization substance A [Lautropia mirabilis ATCC 51599] Length = 496 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 207/510 (40%), Positives = 329/510 (64%), Gaps = 23/510 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + DA+A EK++ RDVV + + ++ A + Y DIRV I+ E G FR + Sbjct: 5 ELLLMVDALAREKNVPRDVVFAALESALASAMKKRYKDEVDIRVAISREDGSYRGFRRWQ 64 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + E ++ QI L AR +DP I + + + L ++FGR+ Q+AKQVI+QK+R+A Sbjct: 65 VVPDGELDDHDLQIILSEARKQDPDIQLEEFIEEELEEIEFGRIGAQAAKQVILQKIRDA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ +F + ++SGT+KRV+ I++ G + + RD+ I +ENLR GDRV+++ Sbjct: 125 EREQIINDFLSRGDSLLSGTIKRVDREGAIIESGRIEARLPRDQMIPKENLRNGDRVRAW 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + + RE RGPQ+ LSRT P+F++KLF +EVPEI G++Q++A +RDPG RAK+AV ++D Sbjct: 185 VSRINREGRGPQLFLSRTAPEFIMKLFELEVPEIEQGLLQIRAAARDPGVRAKIAVHATD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DP+G CVG+RGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +++DE+ Sbjct: 245 SRVDPIGTCVGVRGSRVQAVTQELAGERVDIVLWSEDPAQFVIGALAPANVSSILVDEER 304 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 ++V+V ++ L+LAIG G+NVRLAS+LTGW I++++ EE ++ + FM+ Sbjct: 305 HVMDVVVDEDNLALAIGTGGRNVRLASELTGWQINLMSAEESEKKQEDERAAIRGVFMER 364 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++VD +A +L+ EGF +EE+A V ++E+ IE FDE+T E++ RAR L I + Sbjct: 365 LDVDAEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVNELRERARNALLTQAIATE 424 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 +K+ E +++L S+ G+D ++ V L E ++T +DLA +VD+L+ +E Sbjct: 425 EKLNET--ADDLLSLEGMDRELAVKLAEANVRTRDDLAELAVDELIEITE---------- 472 Query: 486 GFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +++ +++I+ AR W +E Sbjct: 473 -------LDEERAKALILKAREH--WFVEE 493 >gi|261364309|ref|ZP_05977192.1| transcription termination/antitermination protein NusA [Neisseria mucosa ATCC 25996] gi|288567563|gb|EFC89123.1| transcription termination/antitermination protein NusA [Neisseria mucosa ATCC 25996] Length = 500 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 205/518 (39%), Positives = 319/518 (61%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RDLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ + Sbjct: 424 TMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ + +I+ AR W +E Sbjct: 478 -------------GVDEEAAKKVILAAREH--WFTEEN 500 >gi|329915249|ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gi|327544954|gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 198/492 (40%), Positives = 308/492 (62%), Gaps = 5/492 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D+D+V + ++ +A + Y DIRV I+ +TG FR Sbjct: 4 EVLLLVDALAREKNVDKDIVFGALEHALSQATKKRYEGDVDIRVTIDRDTGLFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ +I A ++ I++ + +P+ +DFGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEILHFEALEQISDIEVDDHIEEPIESVDFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F ++ +++GT+KR+E G+ IV+ G + + RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILQDFLERGDSMVTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +I V R RGPQV+LSRT P+F++KLF +EVPEI G++ +K+ +RD G RAK+AVF+S Sbjct: 184 FILRVDRNARGPQVILSRTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAVFTS 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA V+ +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRALFMA 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGFA +EE+A V ISE+ IE FDE+T E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVDEGFASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++ + G+ + L ++ G+D LG G+KT+ +G + D+ + Sbjct: 424 EEGLE--GMDDALATMEGMDRVTAGKLGLAGVKTLAAFSGLAYDEFGAILALPADRARQL 481 Query: 485 DGFLSSLGTPKD 496 T ++ Sbjct: 482 IDDEFKDVTDEE 493 >gi|255066627|ref|ZP_05318482.1| transcription termination/antitermination protein NusA [Neisseria sicca ATCC 29256] gi|255049211|gb|EET44675.1| transcription termination/antitermination protein NusA [Neisseria sicca ATCC 29256] Length = 500 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 203/518 (39%), Positives = 319/518 (61%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ +R Sbjct: 4 EMLQLAEALASEKNVEAEVVFQALEFALSTAAKKKADREHMDVRVEIDRDTGEYHTYRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDLEKTIEEIQEEIPGTDIQIGDYYEETLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R++ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVPGKLDALIPREQMIPRENFRGGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ MEVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYEMEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WS ++A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELAGERIDVVLWSSETAEFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+D+D ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDDDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTVEEADERTAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RDLFTAHLNIDDETADILVEEGFATLEEVAYVPAAELFAIEGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ G+DS + L E G+ T +DLA +VD+L+ + Sbjct: 424 TMAIASEEKLEE--VSDDMRNLDGVDSDMLRKLAEAGVTTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ + +I+ AR W +E Sbjct: 478 -------------GVDEEAAKKVILAAREH--WFTEEN 500 >gi|254428350|ref|ZP_05042057.1| NusA N-terminal domain family [Alcanivorax sp. DG881] gi|196194519|gb|EDX89478.1| NusA N-terminal domain family [Alcanivorax sp. DG881] Length = 502 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 202/518 (38%), Positives = 324/518 (62%), Gaps = 24/518 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64 E+L +A+ V+ EK + RDV+ + ++ A + + +IRV+I+ +G+ FR Sbjct: 2 NKEILLVAETVSNEKGVSRDVIFEAIELALAAATKKRFKQEDVEIRVDIDRVSGNAKSFR 61 Query: 65 LLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + VV + E + Q++L A ++D S+ IG + + + FGR+A Q+AKQVI+QKV Sbjct: 62 VWHVVPDEELYEFGKQLTLDEAHEQDTSLQIGDIWEEEVESEAFGRIAAQTAKQVIVQKV 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER + E++D++G+++SGTVK+ ++I+DLG + + +I R+ I RE +R DR Sbjct: 122 REAERRQIVEEYRDRIGDLVSGTVKKASRDSIILDLGGNAEALITREHMIPREAVRQNDR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+ V E RGPQ+ SR P +++LF +EVPEI ++++K +RDPGSRAK+AV Sbjct: 182 IRAYLLGVNEENRGPQLFASRACPDMLIELFKIEVPEIGEELIEIKGAARDPGSRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A VINA++PA V +V+ Sbjct: 242 KTNDQRIDPVGACVGMRGARVQAVSNELAGERIDIVLWDDNPAQLVINAMQPAEVASIVM 301 Query: 302 DEDVGRIEVIVPKEQ-LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +++ V E L+ AIGR GQN+RLAS+LTGW ++++T ++ ++++ + Q Sbjct: 302 DEESHSMDIAVEDESALAQAIGRSGQNIRLASELTGWELNVMTIDDAETKQEEEAEQALQ 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F+ ++VDE +A +LV EGF+ +EE+A V E+ +I+GFDEE ++ RA++ L Sbjct: 362 TFINELDVDEDVAGVLVDEGFSTLEEVAYVPEEEMLAIDGFDEEIVELLRQRAKDALLTK 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++K + +E+L ++ G+D ++ V L GI TMEDLA +VDDLL Sbjct: 422 ALVSEEKFEQAEPAEDLLNMEGMDRELAVELASRGIVTMEDLAEQAVDDLLEIE------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G +++ +I+ AR W E E A Sbjct: 476 -----------GLSEERAAELIMTARAP--WFEGEDEA 500 >gi|300312899|ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gi|300075684|gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 196/465 (42%), Positives = 306/465 (65%), Gaps = 5/465 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + DA+A EK++D++VV + ++ +A + Y DIRV I+ E+G+ FR Sbjct: 4 EILLLVDALAREKNVDKEVVFGALEHALAQATKKRYEGEVDIRVSIDRESGEFESFRRWH 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ ++ L A+++ P I++ + DP+ ++FGR Q KQV++Q++R+ Sbjct: 64 VVPDEAGLQLPDQEVLLFEAKEQFPDIEVDEYIEDPIESVEFGRRFAQDTKQVVLQRIRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER++ +F + +++GT+KR+E G+ I++ G + + RD+ I +ENLR GDRV++ Sbjct: 124 AEREQILADFLARGDALVTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V R RGPQV+LSRT P+F++KLF +EVPEI G +++K+ +RDPG RAK+AV+++ Sbjct: 184 YILRVDRSARGPQVILSRTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTA 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRVQAV EL E++DIV+WS D A FVI AL PA VT +V+DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V +E L++AIGR GQNVRLA++LT W I+I+T EE + + FM+ Sbjct: 304 KHAMDVVVDEENLAIAIGRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFME 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 ++VD+ +A +LV EGF+ +EE+A V I+E+ IE FDEET E++ RAR+ L I Sbjct: 364 KLDVDQEVADILVEEGFSTLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIAS 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 ++ + + + G+D + LG G+KT+ AG + D+ Sbjct: 424 EEGLEGMEEEL--INFEGLDRVLAGKLGLAGVKTLPAFAGLAYDE 466 >gi|308389761|gb|ADO32081.1| N utilization substance protein A [Neisseria meningitidis alpha710] Length = 500 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 210/518 (40%), Positives = 323/518 (62%), Gaps = 30/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTAIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV ++QL+LAIGR GQNVRLAS LTGW ++I+T E + Sbjct: 304 IVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 364 RRLFMDYLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 424 TMAIAAEEKLGE--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR ++K Sbjct: 478 -------------GVNEEPAKAVILTARDTG--FTEDK 500 >gi|238650318|ref|YP_002916170.1| transcription elongation factor NusA [Rickettsia peacockii str. Rustic] gi|238624416|gb|ACR47122.1| transcription elongation factor NusA [Rickettsia peacockii str. Rustic] Length = 503 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQTAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|319760247|ref|YP_004124185.1| transcription elongation protein nusA [Candidatus Blochmannia vafer str. BVAF] gi|318038961|gb|ADV33511.1| transcription elongation protein nusA [Candidatus Blochmannia vafer str. BVAF] Length = 507 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 187/520 (35%), Positives = 304/520 (58%), Gaps = 30/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EKS+ ++ + + ++ A + Y DIRV I+ ++G I FR Sbjct: 2 NKEILFVVEAVSNEKSVPKEKIFLALESALITATKKQYQQDIDIRVTIDRKSGKICTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++V + T +I+L+ AR + I I + D + + F R+ Q+AKQVIIQK+REA Sbjct: 62 WIVVDQVVHPTKEITLEAARLENSKISINDYIEDIVESVGFDRITTQTAKQVIIQKLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F ++ G II+G +K++ + VDLGN+ +G+I+R++ + REN R GDR++ Sbjct: 122 ERMIIIEQFLNRQGSIITGVIKKINRNAIHVDLGNNAEGIIKREDMLPRENFRLGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V+ E +G Q+ +SRT + +++LF +EVPEI ++ VK+ +RDPGSR+K+AV ++ Sbjct: 182 ILCLVKPESKGHQLFISRTCTEMLIELFRIEVPEIGEEVITVKSAARDPGSRSKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E+ID+++W + FVINA+ PA V +++DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELGGERIDVILWDDNPVQFVINAMSPADVVSIIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQN+RL SQL+GW ++++T E RQ + F+ Sbjct: 302 KHSMDISVDESNLAQAIGRNGQNIRLVSQLSGWALNVMTTHELEKKRQSELYNTINIFVH 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEG-FDEETAVEIQGRAREYLEGIDI- 422 +N+DE A +L+ GF+ +EELA V I+E+ SI G FD +T ++ +A++ L Sbjct: 362 VLNIDEKSARVLIDSGFSSLEELAYVPITELLSIGGVFDIKTVELLRSKAKQALTNFTES 421 Query: 423 ---------TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 + Q + EL + G+ +I + L E+GI T++DLA + L Sbjct: 422 GGSIGSMHKSNQDNCDSVNAVSELLKLSGLKYEIALKLVEHGIYTLQDLAEQDILSLSEI 481 Query: 474 SENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 E ++ +I+ AR + W Sbjct: 482 KE-----------------LTTKEIGDLIMEAR-NICWFN 503 >gi|225075066|ref|ZP_03718265.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens NRL30031/H210] gi|224953550|gb|EEG34759.1| hypothetical protein NEIFLAOT_00065 [Neisseria flavescens NRL30031/H210] Length = 501 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 209/519 (40%), Positives = 317/519 (61%), Gaps = 30/519 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR+ + Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +++ + +I+ AR W +E Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEENN 501 >gi|241760381|ref|ZP_04758476.1| transcription elongation factor NusA [Neisseria flavescens SK114] gi|241319259|gb|EER55737.1| transcription elongation factor NusA [Neisseria flavescens SK114] Length = 501 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 209/519 (40%), Positives = 317/519 (61%), Gaps = 30/519 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPEVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ SI+GFDEE ++ RAR+ + Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLSIDGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +++ + +I+ AR W +E Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEENN 501 >gi|157828686|ref|YP_001494928.1| transcription elongation factor NusA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933405|ref|YP_001650194.1| transcription elongation factor NusA [Rickettsia rickettsii str. Iowa] gi|157801167|gb|ABV76420.1| transcription elongation factor NusA [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908492|gb|ABY72788.1| N utilization substance protein A [Rickettsia rickettsii str. Iowa] Length = 503 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNVGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|94501385|ref|ZP_01307905.1| N utilization substance protein A [Oceanobacter sp. RED65] gi|94426498|gb|EAT11486.1| N utilization substance protein A [Oceanobacter sp. RED65] Length = 497 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 204/513 (39%), Positives = 326/513 (63%), Gaps = 23/513 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 E+L +A+AV+ EK ++++V+ + ++ AA+ Y DIRV I+ +G+ +R Sbjct: 4 EILLVAEAVSNEKGVEKEVIFEAIELALAAAAKKRYEDEEPDIRVAIDRRSGEYETYRHW 63 Query: 67 EVVEEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V +++++ A D D ++ G + + +FGR+A Q+AKQ+I+QKVRE Sbjct: 64 TIVSNEVVPALGSELNMQEAADIDTNLKEGDSYEEQIENPEFGRIAAQAAKQIIMQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER + ++D++GE++ GTVK+V N+IVDLGN+ +G++ R++ ++RE R GDR++ Sbjct: 124 AERAKITAAYEDRIGELVHGTVKKVTRDNIIVDLGNNAEGLLPREQLVAREVFRIGDRLR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V E RGPQ++LSR +++LF +EVPEI ++++KA +RDPGSRAK+AV S Sbjct: 184 AVLTSVNPENRGPQLILSRAAGSMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRG+RVQAV EL +E++DIV+W + A VINAL PA V +V+DE Sbjct: 244 NDQRIDPVGACVGMRGARVQAVSNELGNERVDIVLWDDNPAQLVINALAPAEVESIVMDE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++V V ++QL++AIGR GQNV+LAS+LTGW I+++TEEE +Q++ Q M Sbjct: 304 ETNSMDVAVAEDQLAIAIGRGGQNVKLASELTGWVINVMTEEEAGEKQQQEQGSLVQKLM 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 A+++DE +A +LV EGF ++E+A V E+ I+GFDEE E+Q RA++ L I Sbjct: 364 DALDIDEDMAAVLVGEGFTGLDEVAYVPREEMLEIDGFDEEVVDELQARAKDVLLTQAIA 423 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++K+ + +E+L ++ G+D + + L +GI TMEDLA VDD+ Sbjct: 424 SEEKLEDAQPAEDLLNMEGMDQHLALVLASHGIVTMEDLAEQGVDDISSLE--------- 474 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR W E+ + Sbjct: 475 --------GLDEEKAAQLIMTARKP--WFEESE 497 >gi|51473734|ref|YP_067491.1| transcription elongation factor NusA [Rickettsia typhi str. Wilmington] gi|51460046|gb|AAU04009.1| transcription elongation protein NusA (N utilization substance protein A) [Rickettsia typhi str. Wilmington] Length = 503 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 363/511 (71%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++++++ + +IQ A R YG +I+ +IN +TG+I Sbjct: 1 MSNIYNVEILQIIDSVAREKGISKEILIATVEQAIQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D+ RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDYARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ G+II+G VKR+EYG++IVDLG ++ +I++D+ I E+ +P D Sbjct: 121 RVIEAEREKQYNDFKDRKGDIINGIVKRIEYGDIIVDLGRAEAIIKKDQLIKGEHFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR + +VKLF +EVPEI I+QVK+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNKMLVKLFKLEVPEILEDIIQVKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLVPLAPSEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+ Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIRYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEQIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + D ++ +I AR+ Sbjct: 473 ------FKNLAPNSNITDDNIKLLIKTARHH 497 >gi|229586874|ref|YP_002845375.1| transcription elongation factor NusA [Rickettsia africae ESF-5] gi|228021924|gb|ACP53632.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia africae ESF-5] Length = 503 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|213580130|ref|ZP_03361956.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 464 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 191/481 (39%), Positives = 295/481 (61%), Gaps = 24/481 (4%) Query: 41 SLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDP 100 D+RVEI+ ++GD FR +VEEV T +I+L+ AR D S+++G V D Sbjct: 1 KNNEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQ 60 Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-- 158 + + F R+ Q+AKQVI+QKVREAER +F+D+ GEI++G VK+V N+ +++ Sbjct: 61 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKS 120 Query: 159 ----GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 GN++ VI R++ + REN RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF + Sbjct: 121 EGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRI 180 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+I Sbjct: 181 EVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI 240 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNV LASQL Sbjct: 241 DIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQL 300 Query: 335 TGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 +GW ++++T ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E Sbjct: 301 SGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKE 360 Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 + I+G DE T ++ RA+ L + + + + +++L ++ G+D + L Sbjct: 361 LLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAAR 420 Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G+ T+EDLA +DDL G ++ +I+ AR + W Sbjct: 421 GVCTLEDLADQGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFGD 462 Query: 515 E 515 E Sbjct: 463 E 463 >gi|319637701|ref|ZP_07992467.1| N utilization substance protein A [Neisseria mucosa C102] gi|317400856|gb|EFV81511.1| N utilization substance protein A [Neisseria mucosa C102] Length = 497 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 207/518 (39%), Positives = 316/518 (61%), Gaps = 30/518 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 1 MLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GDR Sbjct: 121 DAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGDR 180 Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK+ Sbjct: 181 IRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP+ A FV+NAL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPEPAQFVMNALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 301 VIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F +N+D+ A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + Sbjct: 361 NLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIEGFDEEIVETLRNRARDAILT 420 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 421 MTIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT----- 473 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +++ + +I+ AR W +E Sbjct: 474 ------------GVDEEEAKKVILAAREH--WFTEENN 497 >gi|34581537|ref|ZP_00143017.1| N utilization substance protein A [Rickettsia sibirica 246] gi|28262922|gb|EAA26426.1| N utilization substance protein A [Rickettsia sibirica 246] Length = 503 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q ++KLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLIKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|294085149|ref|YP_003551909.1| NusA antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] gi|292664724|gb|ADE39825.1| NusA antitermination factor [Candidatus Puniceispirillum marinum IMCC1322] Length = 531 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 260/511 (50%), Positives = 353/511 (69%), Gaps = 17/511 (3%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S +EL+Q+AD VA EKSIDR+ V+ M ++IQKA R+ YG DIR I+ ++G I L Sbjct: 5 SIPGMELIQVADVVAREKSIDREEVMLAMEEAIQKAGRAKYGLERDIRAMIDRKSGAIRL 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 R +EVVEEVE+ QIS+ P++ +G LPP++FGR+A Q+AKQVI QKV Sbjct: 65 ERWMEVVEEVEDDETQISVDEGAKLTPAVGLGEFSKQSLPPIEFGRIAAQTAKQVISQKV 124 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER RQ+ E+KD+VGEI+ GT+KR E ++ VDLG ++ VIRR+E I RENLR GDRV Sbjct: 125 RDAERARQFEEYKDRVGEIVVGTIKRAESYSITVDLGRAEAVIRREEMIPRENLRQGDRV 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++YI DVR EQRGPQ+ LSR +FM KLF EVPEIY+GI+++K V+R+ GSRAK++V Sbjct: 185 RAYIIDVREEQRGPQIFLSRACNEFMAKLFTQEVPEIYDGIIEIKGVAREAGSRAKISVL 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D IDPVGACVGMRGSRVQAVV EL+ EK++I+ ++ D A FV+NAL PA V KVV+D Sbjct: 245 SNDPGIDPVGACVGMRGSRVQAVVGELQGEKVEIIPFNDDPAAFVVNALAPAEVAKVVMD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E GR+EV+VP +QLSLAIGRRGQNVRLASQL+GW IDI+TE E+S RQ++F R+ F Sbjct: 305 EVAGRMEVVVPDDQLSLAIGRRGQNVRLASQLSGWYIDILTEAEESERRQEEFRTRSTGF 364 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++A+N+D++IAHLLVAEGF EE+A I E+A+I+GFDE+ A E+Q RA +Y+E Sbjct: 365 IEALNIDDVIAHLLVAEGFVLPEEIAESTIEELANIQGFDEDIATELQNRAVDYVERETT 424 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + + + +L V+++L + I + ++L EN I L + + E Sbjct: 425 RINEALDKLKVADDLRAFEYISLAMLLSLAENNI--------------LTLDDLADLDNE 470 Query: 483 KFDGFLSSLGTPKD-QVESMIIHARYKMGWI 512 + L G D + +I+ AR W Sbjct: 471 ELVSLLGEHGLSDDAEAGDIIMAARAH--WF 499 >gi|319787428|ref|YP_004146903.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317465940|gb|ADV27672.1| NusA antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 503 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 202/479 (42%), Positives = 319/479 (66%), Gaps = 5/479 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFEALEAALASAAKKRYVDQDVVTRVAIDRKDGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +++G + + + +FGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEADGVEVGDYIEEQIENPEFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+++G VKRVE GN+ VDLG + + I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELVTGVVKRVERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+Y+VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLYEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDNRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVAAKSEAEQAVARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF+ VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFSTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNDAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 +++++ E G +E+L ++ G+D AL +G++T EDL+ + D+++ + Sbjct: 424 AVEEQMGEEGPAEDLLALEGMDEDTAFALAAHGVRTSEDLSDLAADEVVEFGIEGLDET 482 >gi|15892740|ref|NP_360454.1| transcription elongation factor NusA [Rickettsia conorii str. Malish 7] gi|20139038|sp|Q92HF4|NUSA_RICCN RecName: Full=Transcription elongation protein nusA gi|15619917|gb|AAL03355.1| N utilization substance protein A [Rickettsia conorii str. Malish 7] Length = 503 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 244/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG DI+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYDIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILESIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF++DSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFAADSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STALFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILQFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|67459264|ref|YP_246888.1| transcription elongation factor NusA [Rickettsia felis URRWXCal2] gi|67004797|gb|AAY61723.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia felis URRWXCal2] Length = 503 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 241/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKVYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+A+ EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAITNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A ++S + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIATSEVSALTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|261379745|ref|ZP_05984318.1| L factor [Neisseria subflava NJ9703] gi|284797423|gb|EFC52770.1| L factor [Neisseria subflava NJ9703] Length = 501 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 208/519 (40%), Positives = 318/519 (61%), Gaps = 30/519 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVETEVVFKALEFALSTAAKKKADREHMDVRVEIDRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I R+E I REN R GD Sbjct: 124 RDAEREQNLNEFLASKEDIVSGTVKRVERHGIIVEVVAGKLDALIPREEMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+ KL+ EVPEI +G+++++ V+RDPG RAK Sbjct: 184 RIRALFLRVDEIGNTGRKQVILSRTSGDFLAKLYANEVPEIADGLLEIREVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+IDIV+WSP++A FV+NAL PA V++ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDIVLWSPETAQFVMNALSPAEVSR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++VIV + QL+LAIGR GQNVRLAS LTGW ++I+T EE + Sbjct: 304 IVIDEDKHAVDVIVDENQLALAIGRGGQNVRLASILTGWQLNIMTVEEADERNAAEDAVI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F +N+D+ A +LV EGFA +EE+A V +E+ +I+GFDEE ++ RAR+ + Sbjct: 364 RNLFTTHLNIDDETADILVEEGFATLEEVAYVPAAELLAIDGFDEEIVETLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 I I ++K+ E VSE++ ++ G+DS + L E G+ +DLA SVD+L+ + Sbjct: 424 TITIAAEEKLGE--VSEDMRNLDGVDSDMLRKLAEAGVTQRDDLAELSVDELVEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +++ + +I+ AR W +E Sbjct: 478 -------------GVDEEEAKKVILAAREH--WFTEENN 501 >gi|330981089|gb|EGH79192.1| transcription elongation factor NusA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 453 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 191/448 (42%), Positives = 304/448 (67%), Gaps = 3/448 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + ++V+ EK + V+ + ++ A + + ++RVEIN +TG+ FR Sbjct: 4 EVLLVVESVSNEKGVPASVIFEALELALATATKKRFEDEVELRVEINRQTGNYETFRRWT 63 Query: 68 VVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+ +++ ++++ A+ + P G ++ + + ++FGR+A Q+AKQVI+QKVREA Sbjct: 64 VVEDEDLDDPAYELAVDQAQAKKPGAVAGDLIEEKIDSIEFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER + +++++GEIISGTVK+V NVIVDLGN+ + ++ R++ ISRE R G RV++ Sbjct: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++R E RGPQ++LSRT P+ +++LF +EVPEI G+++V A SRDPGSRAK+AV S Sbjct: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP GAC+GMRGSRVQAV EL E++DIV+W + A FVINA+ PA V +++DED Sbjct: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ AIGR GQNVRLASQLTGWT++++TE + +Q + + + F++ Sbjct: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + VDE +A +LV EGF +EE+A V + E+ +I+GFDE+ E++ RA++ L I Sbjct: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKAIAT 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALG 452 ++K+ + +E+L S+ G+D + + L Sbjct: 424 EEKLADAHPAEDLLSLEGMDKDLAMELA 451 >gi|15604408|ref|NP_220925.1| transcription elongation factor NusA [Rickettsia prowazekii str. Madrid E] gi|20139314|sp|Q9ZCZ7|NUSA_RICPR RecName: Full=Transcription elongation protein nusA gi|3861102|emb|CAA15002.1| N UTILIZATION SUBSTANCE PROTEIN A (nusA) [Rickettsia prowazekii] gi|292572170|gb|ADE30085.1| N utilization substanceprotein A,transcription termination factor NusA [Rickettsia prowazekii Rp22] Length = 503 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 241/511 (47%), Positives = 361/511 (70%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIYNIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ G+II+G VKR+EYG++IVDL ++ +I++D+ I E+ +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGDIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGEHFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N+ L P+ +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F+ Sbjct: 301 KILIDEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFST 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ ELGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR+ Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARHH 497 >gi|157964683|ref|YP_001499507.1| transcription elongation factor NusA [Rickettsia massiliae MTU5] gi|157844459|gb|ABV84960.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia massiliae MTU5] Length = 503 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 243/511 (47%), Positives = 358/511 (70%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQAAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE+VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEAIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLASQLTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASQLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELSLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I A+ Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTAKQH 497 >gi|285017807|ref|YP_003375518.1| transcription elongation protein nusa [Xanthomonas albilineans GPE PC73] gi|283473025|emb|CBA15530.1| probable transcription elongation protein nusa [Xanthomonas albilineans] Length = 503 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 207/505 (40%), Positives = 317/505 (62%), Gaps = 20/505 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKEGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+++G VKR E GN+ VDLG + + I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELVTGVVKRAERGNIYVDLGGNAEAFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T E+ + + + Q F Sbjct: 304 EEKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAAKSEAEQAVARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LVAEGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAAILVAEGFNSVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ + +L S+PG+D AL +G++T EDL+ + D++L + Sbjct: 424 AAEESDDGGVPAADLLSLPGMDEATAYALAGHGVRTSEDLSDLAADEILEFGIE------ 477 Query: 483 KFDGFLSSLGTPKDQVESMIIHARY 507 ++ +I+ AR Sbjct: 478 ---------DMDHERAAVLILAARA 493 >gi|239946885|ref|ZP_04698638.1| transcription elongation factor NusA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921161|gb|EER21185.1| transcription elongation factor NusA [Rickettsia endosymbiont of Ixodes scapularis] Length = 503 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 242/511 (47%), Positives = 357/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE VE+Y QISL+ A ++P IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVENVEDYLTQISLEEALIKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER++QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAEREKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +VKLF +EVPEI I+Q+K+++RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSIARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA---LRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++NA L P +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T+ FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STELFMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + + KK+ +LGV +EL I + ++ + E GIKT+EDL SV++ Sbjct: 421 DLKNEKIIKKLEDLGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I AR Sbjct: 473 ------FKNLAPNSNITDENIKLLIKTARQH 497 >gi|254521780|ref|ZP_05133835.1| N utilization substance protein A [Stenotrophomonas sp. SKA14] gi|219719371|gb|EED37896.1| N utilization substance protein A [Stenotrophomonas sp. SKA14] Length = 503 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + +G I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 +++ + + +++L S+ G+D AL +G++T EDL+ + D+++ + Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDF 474 >gi|21243417|ref|NP_642999.1| transcription elongation factor NusA [Xanthomonas axonopodis pv. citri str. 306] gi|21108968|gb|AAM37535.1| N utilization substance protein A [Xanthomonas axonopodis pv. citri str. 306] Length = 503 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 200/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFVSRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|190575263|ref|YP_001973108.1| transcription elongation factor NusA [Stenotrophomonas maltophilia K279a] gi|190013185|emb|CAQ46818.1| putative N utilization substance protein A [Stenotrophomonas maltophilia K279a] Length = 503 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 203/471 (43%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + +G I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AQDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 +++ + + +++L S+ G+D AL +G++T EDL+ + D+++ + Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEDLSDLAADEVMDF 474 >gi|78048394|ref|YP_364569.1| transcription elongation factor NusA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294666762|ref|ZP_06731996.1| transcription elongation factor NusA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924690|ref|ZP_08186128.1| transcription termination factor NusA [Xanthomonas perforans 91-118] gi|78036824|emb|CAJ24517.1| N utilization substance (transcription elongation) protein A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292603423|gb|EFF46840.1| transcription elongation factor NusA [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544896|gb|EGD16241.1| transcription termination factor NusA [Xanthomonas perforans 91-118] Length = 503 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 200/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFEAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|325921396|ref|ZP_08183253.1| transcription termination factor NusA [Xanthomonas gardneri ATCC 19865] gi|325548154|gb|EGD19151.1| transcription termination factor NusA [Xanthomonas gardneri ATCC 19865] Length = 503 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGNYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQTSARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEIAAILVTEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|325915554|ref|ZP_08177865.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC 35937] gi|325538270|gb|EGD09955.1| transcription termination factor NusA [Xanthomonas vesicatoria ATCC 35937] Length = 503 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 201/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +++G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVEVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|289665188|ref|ZP_06486769.1| transcription elongation factor NusA [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667364|ref|ZP_06488439.1| transcription elongation factor NusA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 503 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 201/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|166712599|ref|ZP_02243806.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzicola BLS256] Length = 503 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 201/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQA+ EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAISNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 474 >gi|58582842|ref|YP_201858.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624709|ref|YP_452081.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58427436|gb|AAW76473.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368649|dbj|BAE69807.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 503 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 200/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDARTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + + F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARKLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 474 >gi|21231945|ref|NP_637862.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991044|ref|YP_001903054.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. B100] gi|21113674|gb|AAM41786.1| N utilization substance protein A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167732804|emb|CAP50998.1| N utilization substance (transcription elongation) protein A [Xanthomonas campestris pv. campestris] Length = 503 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|194366589|ref|YP_002029199.1| transcription elongation factor NusA [Stenotrophomonas maltophilia R551-3] gi|194349393|gb|ACF52516.1| NusA antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 503 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 314/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDEEVLTRVVIDHKDGSYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L A D +D+G + + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQIRLMDAVDEAEGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + +G I +D+ I R+ LR GDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIYVDLGGNAEGFIPKDKGIPRDVLRAGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVL 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDQRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNDNPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T+++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTQDQVTAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE IA +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDKLEVDEEIAGILVSEGFGTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNEAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 +++ + + +++L S+ G+D AL +G++T E+L+ + D+++ + Sbjct: 424 AVEEGLEDGQPAQDLLSLKGMDEATAYALAGHGVRTSEELSDLAADEVMDF 474 >gi|66767928|ref|YP_242690.1| transcription elongation factor NusA [Xanthomonas campestris pv. campestris str. 8004] gi|66573260|gb|AAY48670.1| N utilization substance protein A [Xanthomonas campestris pv. campestris str. 8004] Length = 503 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 202/471 (42%), Positives = 315/471 (66%), Gaps = 5/471 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 ELL + DAVA EK + R+V+ + ++ AA+ Y RV I+ + G+ FR Sbjct: 4 ELLLVVDAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLTRVTIDHKDGNYETFRRW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ Q+ L A + +D+G V + + DFGR+A Q+AKQVI+Q+VR Sbjct: 64 EVVADDVVMESPDRQVRLMDAIEEADGVDVGDYVEEQIENPDFGRIAAQAAKQVIVQRVR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRV 182 EAER + +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV Sbjct: 124 EAERQQVVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRV 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++KA +RDPG RAK+AV Sbjct: 184 RGYLAEVRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEIKACARDPGDRAKIAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D+ DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++D Sbjct: 244 AHDTRTDPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVD 303 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED +++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q F Sbjct: 304 EDKHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQASARQLF 363 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + VDE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + Sbjct: 364 MDRLEVDEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALVNAAL 423 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 ++ + +E+L ++ G+D + AL E+G++T EDL+ + D+++ + Sbjct: 424 AEEEGLEGTQPTEDLLALEGMDEETAFALAEHGVRTSEDLSDLAADEIVDF 474 >gi|298369368|ref|ZP_06980686.1| transcription termination/antitermination protein NusA [Neisseria sp. oral taxon 014 str. F0314] gi|298283371|gb|EFI24858.1| transcription termination/antitermination protein NusA [Neisseria sp. oral taxon 014 str. F0314] Length = 500 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 204/516 (39%), Positives = 322/516 (62%), Gaps = 30/516 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RVEI+ +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDTEVVFQALEFALSTAAKKKANREHMDVRVEIDRDTGEYRTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + L FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTEIQIGEYYEEQLENEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF + +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQILNEFLARKEDIVSGTVKRVERHGIIVEVVSGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ + V QV+LSRT F+ KL+ MEVPEI +G ++++AV+RDPG RAK Sbjct: 184 RIRALLLRVDEIGSTGRKQVILSRTDKNFLAKLYAMEVPEIEDGSLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDP G C+G+RGSRV AV EL E+ID+V+WSP++A FVINAL PA VT+ Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSPETAQFVINALSPAEVTR 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +V+DED ++V+V ++QL+LAIGR GQNVRLAS LT W ++I+T E + + Sbjct: 304 IVIDEDKHAVDVVVAEDQLALAIGRGGQNVRLASDLTEWQLNIMTVAEADERNEAEDEAI 363 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F + +N+DE A +L+ EGFA +EE+A V +E+ I+GFDEE ++ RAR+ + Sbjct: 364 RKLFTEHLNIDEETADILLQEGFATLEEVAYVPAAELLEIDGFDEEIVEVLRNRARDAIL 423 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + I ++K+ + V+++L S+ G+D+++ L + GI T +DLA +VD+L+ + Sbjct: 424 TLAIASEEKLED--VADDLRSLEGLDTEMLRDLAQAGIITRDDLAELAVDELIEIT---- 477 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G +++ + +I+ AR W + Sbjct: 478 -------------GVTEEEAKKVILAAREH--WFTE 498 >gi|157827030|ref|YP_001496094.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389] gi|157802334|gb|ABV79057.1| transcription elongation factor NusA [Rickettsia bellii OSU 85-389] Length = 500 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 233/508 (45%), Positives = 350/508 (68%), Gaps = 14/508 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++ Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+ Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+ Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K++ ELGV +EL I I ++ + E GIKT+EDL SV++ Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNE----------- 469 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYK 508 F + + ++ +I A+ Sbjct: 470 ---FKNLAPNSNITDENIKLLIKTAKQH 494 >gi|116515165|ref|YP_802794.1| NusA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257019|gb|ABJ90701.1| transcription pausing L factor [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 495 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 187/510 (36%), Positives = 287/510 (56%), Gaps = 19/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + DAV++EKSI R+ + + +++ A + Y +IRV IN TG + +R Sbjct: 2 NKEILSVVDAVSHEKSIPREKIFQALESALEIATKKKYNQDINIRVCINRSTGSFNTYRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV V N T +I+L+ AR + I + + D + + F R+A Q AKQVIIQKVREA Sbjct: 62 WLVVNNVFNPTKEITLEAARFENKKIQLCDYIEDCIDSVTFDRIATQIAKQVIIQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 E++ +F K G+II G VK++ +I+D+GN+ +G+I R++ + REN R DRV+ Sbjct: 122 EKEIILNKFDKKKGQIIIGIVKKISRDYIILDVGNNIEGIIMREDMLPRENFRINDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y++ E++G Q+ +SR+ +++LF +EVPEI +++KA++RDPG R+K+AV + Sbjct: 182 ILYNISYEKQGAQLFISRSKSDMLIELFRIEVPEIREKFIEIKAIARDPGLRSKIAVTTY 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRGSRVQAV EL E+IDI++W + FVIN++ PA V+ + LD Sbjct: 242 DERIDPVGACVGMRGSRVQAVSNELCGERIDIILWDNNPKKFVINSMAPADVSSIFLDNT 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 I + V L+ AIGR GQNVRLASQLTGW ++IIT ++ N Sbjct: 302 NHVINIEVKLCNLAQAIGRNGQNVRLASQLTGWELNIITSNPIIKIKKSKKNNFFDILKN 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 N E L++ GF+ ++ +A I+++ SI+G + + +Q +A LE Sbjct: 362 KFNFTENDILLVIHSGFSSIKSIAYASINQLLSIKGIKTDVVLNMQKKAIFILENDKKKS 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 K ++ ++ E ++ I+ I L E I T+E LA S+DDL S Sbjct: 422 IKIYKKKYLNSEFANLKNINKFIIQQLIEKKICTLEHLAEQSIDDLHDISFLFFRTSW-- 479 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 S+I+ AR + W + Sbjct: 480 ---------------SLIMEAR-NICWFNE 493 >gi|225023298|ref|ZP_03712490.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC 23834] gi|224943943|gb|EEG25152.1| hypothetical protein EIKCOROL_00151 [Eikenella corrodens ATCC 23834] Length = 498 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 201/517 (38%), Positives = 316/517 (61%), Gaps = 29/517 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK+++ +VV + ++ AA+ D+RV I+ TG+ FR Sbjct: 4 EMLQLAEALASEKNVESEVVFEALEFALSVAAKKKADREHMDVRVSIDRNTGEYHTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ Q +++ ++ P + IG + L + FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDTQKTIEEIQEEFPDSPLQIGEYYEEELENVAFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AER++ EF + +++ GTVKRVE +IV++G D +I RD+ I REN R GDR+ Sbjct: 124 RDAEREQILQEFLARREDVVMGTVKRVERHGIIVEIGRLDALIPRDQCIPRENFRSGDRI 183 Query: 183 KSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 ++ V + QV+LSRT +F+VKLF EVPEI +G++++K +RDPG RAK+A Sbjct: 184 RALFLRVDEQGNSGRKQVILSRTSREFLVKLFEQEVPEIEDGLLEIKEAARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D+ IDP G C+G+RGSRV AV EL E++D+V+WSP++A FVINAL PA V++++ Sbjct: 244 VKSNDARIDPQGTCIGVRGSRVNAVSNELAGERVDVVLWSPETAQFVINALSPAEVSRIL 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + + + Sbjct: 304 IDEDNHSVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVQEAEERHEAEDAQIRS 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FMQ +NVDE A LL+ EGFA +EE+A V +E+ I GFDE T ++ RAR+ + Sbjct: 364 LFMQHLNVDEQTADLLIEEGFAALEEVAYVPAAELVEI-GFDEATVETLRNRARDAILT- 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + + + V EEL ++ GID + L + GI T + LA S D+L+ + Sbjct: 422 -LAIMSEEKLDEVEEELKTLNGIDQDMLRDLAQAGITTRDSLAELSTDELIEIT------ 474 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 G +++ +++I+ AR W + + Sbjct: 475 -----------GVSEEEAKTVILAAREH--WFAETQE 498 >gi|91205427|ref|YP_537782.1| transcription elongation factor NusA [Rickettsia bellii RML369-C] gi|91068971|gb|ABE04693.1| N utilization substance protein A, transcription termination factor NusA [Rickettsia bellii RML369-C] Length = 500 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 234/508 (46%), Positives = 351/508 (69%), Gaps = 14/508 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI D+VA EK I ++V++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNIEILQIIDSVAREKGISKEVLISTVEQAVQVAVRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L+VVE VE+Y QIS+ A +DP I G + + LP +D RVA Q+AKQVI Q Sbjct: 61 NLLRVLKVVENVEDYLTQISITEALQKDPEAKIDGEIYEYLPSIDHARVAAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ EAER++QY +FKD+ GE+I+G VKR+EYG++IVDL ++ +I+R++ I EN + GD Sbjct: 121 RIIEAEREKQYHDFKDRKGEVINGVVKRIEYGDIIVDLNRAEAIIKREQQIKGENFKVGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ DVR E +GPQ+ LSR + + KLF +EV EIY G +++KAV+RDPGS+AK+A Sbjct: 181 RVKAYVQDVRHETKGPQIFLSRADDRMLAKLFELEVTEIYEGGIEIKAVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VF+S++ IDP+G+CVG++G+RV+A+ EL EKIDI++W+ D A F+INAL PA + K++ Sbjct: 241 VFASENGIDPIGSCVGIKGNRVRAITNELNGEKIDIILWNRDVAQFIINALAPAEILKIL 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++EV+V +E SLAIGRRGQNVRLA++LTGW IDI+TEE++S R ++F T+ Sbjct: 301 IDEDKRKVEVVVSQENQSLAIGRRGQNVRLAAKLTGWNIDIMTEEQESKRRNEEFVTSTE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM+A++V+E+I LL GF VE++ I+ + +IEGF+EE AVEI+ RA Y+ Sbjct: 361 LFMEALDVEEVIGQLLSVSGFNTVEQIVNSDINALMNIEGFEEELAVEIRNRAINYVNLR 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K++ ELGV +EL I I ++ + E GIKT+EDL SV++ Sbjct: 421 NEKIVKELEELGVEQELIDILEIQPELILKFAEYGIKTIEDLGEMSVNE----------- 469 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYK 508 F S+ + ++ +I A+ Sbjct: 470 ---FKNLASNSNITDENIKLLIKTAKQH 494 >gi|319778227|ref|YP_004129140.1| Transcription termination protein NusA [Taylorella equigenitalis MCE9] gi|317108251|gb|ADU90997.1| Transcription termination protein NusA [Taylorella equigenitalis MCE9] Length = 490 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 192/509 (37%), Positives = 302/509 (59%), Gaps = 25/509 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ DA+A+EK++ + + + + ++ A + + +D+ V I+ +TG+ R E Sbjct: 4 EIIHFIDAMAHEKNLPVEEIFAAIEGALASAMKKQFKEGADVVVRIDRDTGNYVGVRRWE 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV + ++ + A + P I +G + +PL P +FGR+ Q A+QVI+QK+R+ Sbjct: 64 VVPDEHGIQEPEREEIYSDAVEDHPDIKVGDFIEEPLEPQEFGRIGAQIARQVILQKMRD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 +ER + EF + +I+SG VKR++ G+V+V++G + + + E I +E+ R GDRV++ Sbjct: 124 SERKQWIDEFVAQNDKIVSGVVKRIDKGDVVVEVGKLEARLPKAEMIPKESFRIGDRVRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ + +E +G + LSR P+F+ +LF EVPEI G++++KA +RDPG RAK+AV + Sbjct: 184 YVQKIDKEAKGQIIQLSRIDPEFLRELFEYEVPEIEQGLLEIKAAARDPGIRAKIAVQAY 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+G CVGMRGSRV AV EL E+IDIV+WS + A FVI+AL PA V+ +++DE+ Sbjct: 244 DKRIDPIGTCVGMRGSRVGAVRHELNGEQIDIVLWSDEPAEFVISALSPAHVSSIIVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++V+V E L+ AIG RGQNVRLAS LTGW I+I+T EE +Q++ + F Sbjct: 304 KHVMDVVVDDENLAKAIGTRGQNVRLASDLTGWQINIMTPEESQARQQEEDQSIMKLFTD 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +++DE IA +L+ EGF +EE+A V E+ IEGFDEE E++ RAR L Sbjct: 364 KLDIDEEIATVLIEEGFTGLEEIAYVPEQELLEIEGFDEELVHELRNRARHSLSVAAAER 423 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 +++ S+ L I G+ +++ L EN I T +DLA + D+LL Sbjct: 424 DERVAS---SKGLIDIDGLTTEMVSKLVENNISTRDDLAELATDELLEI----------- 469 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIE 513 L + +I+ AR W E Sbjct: 470 ------LDVDEATAYDIILKARAH--WFE 490 >gi|329120394|ref|ZP_08249061.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200] gi|327462349|gb|EGF08675.1| N utilization substance A [Neisseria bacilliformis ATCC BAA-1200] Length = 502 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 200/523 (38%), Positives = 313/523 (59%), Gaps = 31/523 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +LQ+A+A+A EK++D DVV + ++ AAR G ++RVEI+ +TG+ +R Sbjct: 1 MLQLAEALASEKNVDADVVFDALEVALSTAARKKSGREHMNVRVEIDRDTGEHRTYRRWL 60 Query: 68 VV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +V E+ + +++ ++ PS I IG + + FGR A +AKQ+I+Q++R Sbjct: 61 IVADEDYTYPDEEKTIEEIQEEIPSTQIQIGEYYEEQIENESFGRQAAMTAKQIILQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDR 181 +AER++ +F + +II+GTVKR E ++V+L G D +I RD+ I REN R GDR Sbjct: 121 DAEREKVLNDFLENRDDIITGTVKRTERHGIVVELIPGKLDALIPRDQCIPRENFRSGDR 180 Query: 182 VKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +++ V + QV+LSR +F+ KLF EVPEI +G+++++ +RDPG RAK+ Sbjct: 181 IRALFLRVEEIGQSGRKQVILSRASREFLAKLFEQEVPEIADGLLEIREAARDPGHRAKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+WSPD+A FVINAL PA V+++ Sbjct: 241 AVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVLWSPDTAQFVINALSPAEVSRI 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED ++VIV ++QL+ AIGR GQNVRLA+ LTGW ++I+T +E + Sbjct: 301 VIDEDNHAVDVIVAEDQLAPAIGRGGQNVRLAADLTGWQLNIMTVKEAEERHAAEDAAIR 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + +NVDE A +LV EGF +EE+A V E+ I GFDE T ++GRAR+ + Sbjct: 361 SLFTEHLNVDEETATVLVEEGFTSLEEIAYVPSEELVEI-GFDEATVDALRGRARDAILS 419 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + ++K++E ++E+L ++ G D + L + GI + LA SVD+L+ + + G Sbjct: 420 LAMAKEEKLQE--IAEDLRTLDGTDEDMLRDLAQAGITDRDALAELSVDELIEITGVETG 477 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEV 522 + E +I+ AR W E+ E Sbjct: 478 -----------------EAEKIILAARAH--WFEENNQEQGEA 501 >gi|307256660|ref|ZP_07538439.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864708|gb|EFM96612.1| Transcription termination factor NusA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 453 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 194/470 (41%), Positives = 299/470 (63%), Gaps = 20/470 (4%) Query: 46 MSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD 105 D+RV I+ +TGD FR VVE+V N T +ISL+ A+ +PS+ +G +V D + + Sbjct: 2 DIDVRVVIDRKTGDFQTFRRWIVVEQVHNMTREISLEAAQYENPSVQLGDIVEDEVDSIP 61 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGV 164 F R+ +Q+A+QVI K+REAER++ +F+ ++ II+ TVK+V +I+DLGN ++ V Sbjct: 62 FDRITMQTARQVISTKIREAERNKVIEQFRSQLNTIITATVKKVNREQIILDLGNQAEAV 121 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 I R++ + REN RPGDRV+ +Y ++ E +GPQ+ L+R P + +LF +EVPEI ++ Sbjct: 122 IVREDMLPRENFRPGDRVRGVLYAIKPESKGPQLFLTRAKPVMLEELFKLEVPEIGEDVI 181 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++K SRDPGSRAK+AV S D IDPVGACVGMRG+RVQA+ EL E++DIV+W + A Sbjct: 182 EIKGASRDPGSRAKIAVKSHDKRIDPVGACVGMRGARVQAISNELGGERVDIVLWDDNPA 241 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FVINA+ PA V+ +V+DED +++ V + L+ AIGR GQNVRLA+QLTGWT++++T Sbjct: 242 QFVINAMAPAEVSAIVVDEDKHAMDIAVEGKNLAQAIGRNGQNVRLATQLTGWTLNVMTT 301 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF-DE 403 E+ Q + N+ F+ A+ +D+ A LLV EGF+ +EE+A + +SE+ +I+G DE Sbjct: 302 EDLDKKHQAEDNKVISLFVSALEIDDEFAQLLVDEGFSSLEEIAFIPVSELTAIDGIEDE 361 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 A E+Q RA+ + + ++ +++ + + L ++ G+D I L E GI T+E+LA Sbjct: 362 NLAEELQTRAKNAITAKALAEEEALKQAHIEDRLLNLEGLDRHIAFKLAEKGITTLEELA 421 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + DDL E D+ +I+ AR ++ W Sbjct: 422 EQATDDLSDIEE-----------------LSADKASELIMAAR-QICWFS 453 >gi|71891890|ref|YP_277620.1| transcription elongation factor NusA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795996|gb|AAZ40747.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 505 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 197/520 (37%), Positives = 315/520 (60%), Gaps = 27/520 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ ++ + + ++ A + Y ++RV I+ ++G I+ FR Sbjct: 2 NKEILAVIEAVSNEKAVPQEKIFEALETALAAATKKKYEQDVEVRVVIDRKSGQINTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V T +I+L AR +P + I V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WVVVEQVTQPTKEITLDAARFENPKVQICDYVEDVIESISFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F ++ G+I++G VK++ ++ +DLGN+ +G+I R+E + REN R GDR++ Sbjct: 122 ERAIIIEQFLNRQGDIVTGIVKKINRDSISIDLGNNAEGMINREEMLPRENFRLGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y VR + +GPQ+L+SRT + +++LF +EVPEI ++ +KA +RDPGSRAK+AV ++ Sbjct: 182 ILYLVRPDFKGPQLLISRTRTEMLIELFRIEVPEIGEELITIKAAARDPGSRAKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL E++D+++W + FVINA+ PA V +V+DED Sbjct: 242 DKRIDPVGACVGMRGARVQAVSGELGGERVDVILWDDNPVQFVINAMSPADVASIVIDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L AIGR GQN+RL SQL+GW ++I+T +E RQ + T F+ Sbjct: 302 KHTMDISVEETNLPQAIGRNGQNIRLVSQLSGWELNIMTVDELEKKRQVEICTITNIFIH 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID-IT 423 ++N+ E A +L+ GF+ +EELA V ++E+ SI+ FD +T I+ RA+ L+ I Sbjct: 362 SLNISEQFAKILIDSGFSSLEELAYVPMTELLSIKEFDRKTVEIIRDRAKSALKNFSVIH 421 Query: 424 LQKKIRE-------LGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 +K I+E + L +P I+ K+ + L E GI T+E+LA + DL Sbjct: 422 NEKNIKEDNYTAAVIHPVTGLLRLPNIEYKLALTLVERGISTLEELAEQDISDLSDIE-- 479 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G K+++ +I+ AR + W + Sbjct: 480 ---------------GLTKEKIGELIMEAR-NICWFNNDN 503 >gi|325267087|ref|ZP_08133756.1| N utilization substance A [Kingella denitrificans ATCC 33394] gi|324981440|gb|EGC17083.1| N utilization substance A [Kingella denitrificans ATCC 33394] Length = 499 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 185/515 (35%), Positives = 305/515 (59%), Gaps = 28/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L + +A+A EK+++ DVV + ++ AA+ ++ V IN +TG+ R Sbjct: 4 EILALVEALASEKNVEPDVVFEALEVALGIAAKKKADREHMNLEVRINRDTGEYRTVRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I++G + +P FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEIPGIDINVGDYFEEDIPNEAFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181 R+AER++ F +I+ GTVKRVE ++V+L D +I RD+ + REN R GD+ Sbjct: 124 RDAEREQILNAFLATREDIVVGTVKRVERHGIVVELAPKLDALIPRDQMLPRENYRGGDK 183 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ V Q+LLSRT +F+ KLF EVPEI +G++ ++ V+RDPG RAK+A Sbjct: 184 IRALFLRVEEFNGGRKQILLSRTSGEFLRKLFEQEVPEIADGLLDIREVARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP G C+G+RGSRV AV EL E+ID+V+WS D+A FVINAL PA V+++V Sbjct: 244 VKSNDQRIDPQGTCIGVRGSRVNAVSNELSGERIDVVLWSDDTADFVINALSPAQVSRIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E +++ + Sbjct: 304 IDEEKNAVDVIVTEDQLALAIGRGGQNVRLAAELTGLQLNIMTVQEAEQRSEEEAAALRE 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + DE +A LV F +EE+A V +S++ IE D+E A ++ +AR+ L Sbjct: 364 LFTSQLGADETVAQALVDAEFTSIEEVAFVPMSDLTDIEEIDDELAETLRAKARDVLLQT 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++K+ V+++L + G+D + L + I EDLA S+D+L+ + Sbjct: 424 ELAAEEKLN--SVADDLRELEGVDDDMLRDLVDANITNREDLAELSIDELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ E +I+ AR W ++ Sbjct: 476 -----------GVSHEEAEQVIMAARAH--WFAQD 497 >gi|157803622|ref|YP_001492171.1| transcription elongation factor NusA [Rickettsia canadensis str. McKiel] gi|157784885|gb|ABV73386.1| transcription elongation factor NusA [Rickettsia canadensis str. McKiel] Length = 503 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 240/511 (46%), Positives = 353/511 (69%), Gaps = 17/511 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + +E+LQI ++VA EK I +++++S + ++Q A R YG +I+ +IN +TG+I Sbjct: 1 MSNIGNVEILQIINSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +L R+L++VE VE+Y QIS + A ++P+ IG + + LPP+D RV+ Q+AKQVI Q Sbjct: 61 NLLRILKIVENVEDYLTQISFEEALIKNPAAKIGDEIYEYLPPIDHARVSAQAAKQVITQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +V EAER +QY +FKD+ GEII+G VKR+EYG++IVDL ++ +I++D+ I EN +P D Sbjct: 121 RVIEAERAKQYHDFKDRKGEIINGIVKRIEYGDIIVDLSRAEAIIKKDQLIKGENFKPND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ DVR+E +GPQ+ LSR Q +V LF +EVPEI+ I+Q+K+V+RDPGS+AK+A Sbjct: 181 RIKAYVQDVRQETKGPQIFLSRVDNQMLVNLFKLEVPEIFEDIIQIKSVARDPGSKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN---ALRPAIVT 297 VF+SDSSIDPVG+CVG+RG+RV+AV EL EKIDIV+WS D A F++N L A +T Sbjct: 241 VFASDSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNALAPLAAAAIT 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 K+++DED ++EV+V +E S+AIGRRGQNVRLAS+LTGW IDI+TEE++S R ++F Sbjct: 301 KILIDEDSHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFLT 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 T FM+A++V+E+I LL GF VE++A +IS + IEGF+EE AVEI+ RA Y+ Sbjct: 361 STGLFMEALDVEEVIGQLLSVTGFNSVEQIANSEISTLTRIEGFEEELAVEIKNRAINYV 420 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + KK+ ELGV +E+ I + ++ + E GIKT+EDL SV++ Sbjct: 421 NLKNEKIIKKLEELGVEQEVIDILELPLELILKFAEYGIKTIEDLGEMSVNE-------- 472 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYK 508 F S + ++ +I AR Sbjct: 473 ------FKNLAPSANITDENIKLLIKTARQH 497 >gi|148651972|ref|YP_001279065.1| transcription elongation factor NusA [Psychrobacter sp. PRwf-1] gi|148571056|gb|ABQ93115.1| NusA antitermination factor [Psychrobacter sp. PRwf-1] Length = 495 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 183/515 (35%), Positives = 296/515 (57%), Gaps = 30/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + +++ + + +RVEI+ +TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + IG + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER F+ ++GE++ G VK+ I+DLG++ +G + RD+ + RE LR R Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V R+ RG Q+LLSRT P +V L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLVALMNKEVPEINEQIIEIRDVARQPGVRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + + Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR W +E Sbjct: 474 -----------GLDEKTAGELIMKARES--WFNEE 495 >gi|319941974|ref|ZP_08016295.1| N utilization substance protein A [Sutterella wadsworthensis 3_1_45B] gi|319804627|gb|EFW01497.1| N utilization substance protein A [Sutterella wadsworthensis 3_1_45B] Length = 514 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 205/531 (38%), Positives = 321/531 (60%), Gaps = 29/531 (5%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--LYGTMSDIRVEINPETGDIS 61 N ++L++ D +A EK++ +DVV V+ ++ A + G +DI V ++ TG+ S Sbjct: 1 MNSRDMLELVDVLASEKNVAKDVVFGVLELALASAVKRARFPGEDADIVVRVDRTTGEFS 60 Query: 62 LFRLLEVVEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF---GRVAVQSAK 115 R VV + E Q D P + G + PL +D GR Q AK Sbjct: 61 AVRRWLVVPDEEGLQEPDHQEMYSDIHDEFPDLQPGDYIERPLENVDVDSAGRRFAQDAK 120 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175 QVI+Q++R+AER++ EF ++ I++GT+KR++ G+ IV++G + + R++ I REN Sbjct: 121 QVILQRLRDAEREQILAEFLERHETIVTGTIKRMDKGDAIVEVGRLEARLPRNQMIPREN 180 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 +R GDRV++Y+ V +G V+LSRT P+F+ KLF +EVPEI GI+++KA +RDPG+ Sbjct: 181 MRTGDRVRAYVDHVGDTPKGRTVILSRTSPEFIKKLFELEVPEIEEGIIEIKAAARDPGA 240 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV S D +DP+G C+GMRGSRV AV TEL E+IDIVVW+ D A FV+ AL PA Sbjct: 241 RAKIAVASHDQRVDPIGTCIGMRGSRVNAVTTELSGERIDIVVWNADPAQFVVGALEPAK 300 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V+ ED +EV+V ++ L++AIGR GQNVRLAS+LTGW I+I+T +E S R + Sbjct: 301 VRSIVMLEDSHTMEVVVDEDNLAVAIGRGGQNVRLASELTGWQINILTAQEASEKRAAEV 360 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 N + FM+++++DE A++L+ EGF+ VEE+A V E+ SIE FD ET E++ RAR Sbjct: 361 NRIREEFMKSLDIDEAAANVLIDEGFSSVEEIAYVPEKELFSIEAFDHETIEELRQRARN 420 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L IT ++ +R+ + ++ G+D+ + L G+KT++DL +V++L+ + Sbjct: 421 KLLADAITREENLRKADPK--MLALEGMDNDLANKLVARGVKTLDDLGDLAVEELVEMT- 477 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 G +++ + +I+ AR W + AD+ + + Sbjct: 478 ----------------GLDEERAKKLIMGARAH--WFGDGESADQPAETKA 510 >gi|332976700|gb|EGK13538.1| N utilization substance A [Psychrobacter sp. 1501(2011)] Length = 495 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 182/515 (35%), Positives = 296/515 (57%), Gaps = 30/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + +++ + + +RVEI+ +TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEEALVVSTKKRVYTEQPEVAVRVEIDRDTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + IG + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER F+ ++GE++ G VK+ I+DLG++ +G + RD+ + RE LR R Sbjct: 122 REAERALTADAFEPRIGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V R+ RG Q+LLSRT P ++ L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 INAILYHVNRDNRGAQLLLSRTSPDMLIALMNKEVPEISEQIIEIRDVARQPGVRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV +EL E+ID++VWS D A ++I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQSELDGERIDVIVWSDDPAQYIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E E +Q + + Sbjct: 302 DEDAKTADIIFTANDQLARAIGAQGQNVRLASELTGYKLNMMLEAEYLERQQNETKAYLE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + VDE +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYNRLEVDEDLAQALVDVGFTSIEEVAYVPVETFYDIEGLDDDAIEMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL ++ G+ + L + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSKELLTMDGMTTDWAYKLAQRDIITLDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G + +I+ AR W +E Sbjct: 474 -----------GLDEKTAGELIMKARES--WFNEE 495 >gi|188577681|ref|YP_001914610.1| transcription elongation factor NusA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522133|gb|ACD60078.1| N utilization substance protein A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 495 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 198/465 (42%), Positives = 310/465 (66%), Gaps = 5/465 (1%) Query: 14 DAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVEE- 71 DAVA EK + R+V+ + ++ AA+ Y RV I+ + G +R EVV + Sbjct: 2 DAVANEKGVPREVIFDAIEAALASAAKKRYPDQDVLARVTIDHKDGTYETYRRWEVVADD 61 Query: 72 --VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E+ Q+ L A D +D+G + + + DFGR+A Q+AKQVI+Q+VREAER + Sbjct: 62 VVMESPDRQVRLMDAIDEADGVDVGDYIEEQIENPDFGRIAAQAAKQVIVQRVREAERQQ 121 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYD 188 +KD+VGE+I+G VKR E GN+ VDLG + + I +D+ I R+ LRPGDRV+ Y+ + Sbjct: 122 VVDAWKDRVGELITGVVKRAERGNIFVDLGGNAEAFIPKDKGIPRDVLRPGDRVRGYLAE 181 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR E RGPQ+ +SR P+FM++LF +EVPE+ G+V++ A +RDPG RAK+AV + D+ Sbjct: 182 VRSEPRGPQLFISRAAPEFMIELFKLEVPEVGQGLVEINACARDPGDRAKIAVIAHDART 241 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DP+GAC+GMRGSRVQAV EL E++DIV+W+ + A FVINA+ PA V +++DED + Sbjct: 242 DPIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSIIVDEDKHSM 301 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 ++ V +++L+ AIG+ GQNVRLAS+LTGW ++++T ++ + + + Q FM + V Sbjct: 302 DLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTADQVAAKSEAEQAAARQLFMDRLEV 361 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE I+ +LV+EGF VEE+A V + E+ ++EGFDE+ E++ RAR+ L + ++ + Sbjct: 362 DEEISAILVSEGFNTVEEIAYVPVGELLAVEGFDEDIVEELRARARDALLNAALAEEEGL 421 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGW 473 +E+L ++ G+D + VAL E+G++T EDL+ + D+++ + Sbjct: 422 EGTQPTEDLLALEGMDEETAVALAEHGVRTSEDLSDLAADEIVDF 466 >gi|294788742|ref|ZP_06753983.1| transcription termination/antitermination protein NusA [Simonsiella muelleri ATCC 29453] gi|294483224|gb|EFG30910.1| transcription termination/antitermination protein NusA [Simonsiella muelleri ATCC 29453] Length = 500 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 186/518 (35%), Positives = 305/518 (58%), Gaps = 28/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK+++ +VV + ++ AA+ D+ V I+ +TG+ R Sbjct: 4 EILALAEALASEKNVEPNVVFEALETALGIAAKKKADREHMDLEVRIHRDTGEYRTVRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I +G + +P FGR A Q+AKQ+I+QK+ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEIPGIDIQVGDYYEEDIPNEAFGRQAAQTAKQIILQKI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181 R+AER++ F +I+ GTVKRVE ++V++ D +I R++ + REN R GD+ Sbjct: 124 RDAEREQILNAFLATREDIVVGTVKRVERHGIVVEIAPKLDALIPREQALPRENYRSGDK 183 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ + V QV+LSR+ +F+ KLF EVPEI +G+++++ VSRDPG RAK+A Sbjct: 184 IRALFWKVEELNGGRKQVMLSRSSGEFLRKLFEQEVPEIADGLLEIREVSRDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+ F+INAL PA V +++ Sbjct: 244 VKSNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDAGDFIINALSPANVGRII 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ +VIV ++QL+LAIGR GQNVRLA+ LTGW ++I+T +E + + Sbjct: 304 IDEEKHACDVIVEEDQLALAIGRGGQNVRLAADLTGWQLNIMTVKEAEERNAAEDAAIRE 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM +N+ E IA++LV EGF +EE+A V I E+ IE + +I+ +AR+ + Sbjct: 364 IFMSQMNLSEDIANILVQEGFTSIEEVAYVAIDELQEIEDLSADDVDDIRTKARDAVLKA 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++K+ + ++L ++ G+D + L E I +DLA S+D+L+ + Sbjct: 424 ALEAEEKLN--QIDQDLKNLDGMDEDMLRDLAEANITHRDDLAELSLDELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G KD+ E +I+ AR W E A Sbjct: 476 -----------GVSKDEAEKVIMAARAH--WFADETNA 500 >gi|32490976|ref|NP_871230.1| transcription elongation factor NusA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166182|dbj|BAC24373.1| nusA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 494 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 182/510 (35%), Positives = 308/510 (60%), Gaps = 20/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + + D+R+ I+ ++G FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALEKALAAATKKKHEKDIDVRISIDRKSGSFGTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+EV T +I+L+ A+ +P + + D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WMIVDEVTQPTKEITLEAAKIENPEAKLKEYIEDKIKSVLFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ER +FK++ GEII+G VK++ V +DLG +++ VI +++ + +E RPGDRV+ Sbjct: 122 ERSMIVNKFKERKGEIITGIVKKLNRDGVSLDLGSHAEAVINKEDMLPKEYFRPGDRVRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y + E +G Q+ +SR+ + +++LF +EVPEI ++ +KA +RDPG R+K+AV ++ Sbjct: 182 VLYYINPESKGAQLFISRSKKEMLIELFRIEVPEIGEEVINIKATARDPGLRSKIAVQTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV EL E+IDIV+W + A FVINA+ PA VT +V+DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSRELGGERIDIVLWDENPAQFVINAMSPADVTSIVIDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V E L+ AIG+ GQN+RLASQL+GW ++++TE++ + + F++ Sbjct: 302 NHTMDIAVNSENLAQAIGKNGQNIRLASQLSGWELNVMTEKDLKNKNKAEEENSMNLFLE 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N+++ +A LV EGF+ +E++A + I+E+ SI+ +E+TA ++ +A+ L I + Sbjct: 362 HLNINQELAKNLVKEGFSKIEDIAYIPINELLSIDILNEKTAKLLKEQAQYALTKIALMK 421 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++K + E+L + G++S I E GI T+EDLA +DD+ Sbjct: 422 EEK-ELTSLDEKLIKLSGVNSNIAYKFAEKGIFTLEDLAEQGIDDISDIK---------- 470 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + +I+ AR + W Sbjct: 471 -------DLSNKKAGELIMAAR-NICWFNN 492 >gi|257453568|ref|ZP_05618858.1| transcription elongation factor NusA [Enhydrobacter aerosaccus SK60] gi|257449026|gb|EEV23979.1| transcription elongation factor NusA [Enhydrobacter aerosaccus SK60] Length = 493 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 179/515 (34%), Positives = 289/515 (56%), Gaps = 30/515 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISL 62 E+L + + V+ EK ++ + + + ++ + + +RV IN +TGD Sbjct: 2 NREILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYSEQPEVAVRVHINRKTGDYDT 61 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV E+ E CQ+++ + IG V + + ++FGR+A AKQVIIQ Sbjct: 62 YRYWTVVADEDHEMPACQLAISDLDEN--EWKIGDVKEEQIESIEFGRIAATQAKQVIIQ 119 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER F+ ++GE+I+G VK+ I+DLG++ +G + RD+ + RE LR Sbjct: 120 KIREAERSLVADAFEHRIGEMITGEVKKPARDGYIIDLGDNVEGYLPRDKMLPREQLRIK 179 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + + V R+ RG Q++LSRT PQ + L EVPEI I++++ V+R PG RAK+ Sbjct: 180 GRINAILEQVNRDNRGAQLVLSRTSPQMLTALMQKEVPEIAEQIIEIRDVARQPGLRAKI 239 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 +V ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D+ ++I+AL PA V ++ Sbjct: 240 SVKTNDHRIDPVGACIGMRGTRIQAVQQELEGERIDVVVWSDDAVQYIISALEPADVDRI 299 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +LDED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E + ++ + Sbjct: 300 ILDEDTKTADIIFATNDQLARAIGSQGQNVRLASELTGYRLNMMLEDEYNAQQESETKVY 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F + VDE +A LV GF +EE+A V I+G D++ IQ RA+E + Sbjct: 360 RDLFYTRLEVDEDLAQALVDIGFTSLEEVAYVPAETFYDIDGLDDDAIDAIQERAKEAVI 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 ++ Q+ I+E S+EL ++ G+ L E + T++DLA ++ D+ Sbjct: 420 ADELVKQQNIKE--PSQELLNLEGMTQAWAYKLAERDVITVDDLAEQAIFDIQDIE---- 473 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G + +I+ AR W Sbjct: 474 -------------GLDEKTAGELIMKARES--WFN 493 >gi|323144579|ref|ZP_08079168.1| transcription termination factor NusA [Succinatimonas hippei YIT 12066] gi|322415655|gb|EFY06400.1| transcription termination factor NusA [Succinatimonas hippei YIT 12066] Length = 493 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 198/513 (38%), Positives = 311/513 (60%), Gaps = 27/513 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ IA+A++ E++I RD + + ++ A + Y +RV I+ + G +R Sbjct: 4 EIIAIAEALSNERAIPRDKIFEALETALATATKKKYPVDIAVRVAIDRKDGSYRTYRRWN 63 Query: 68 VVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V++ +EN ++SL A++ I G VV + +P + F R+ +Q+AKQV+ QKV++ Sbjct: 64 VIDTDGPLENPASEVSLAAAKEDHQGIQAGDVVEEEIPSVKFDRITIQTAKQVLSQKVKD 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 AER++ E ++ +G +++ TVK+ +I+DLGN+ + V+RRD+ I E GDR+K Sbjct: 124 AEREQIIAEQREHLGHVVNATVKKQGRDFLILDLGNNAEAVLRRDQIIPHETFGRGDRIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + ++R + +GPQ++ SRT +F+ +LF +EVPEI I+++ +V+RDPGSRAK++V S Sbjct: 184 VLLSEIRADGKGPQIICSRTANEFLSELFRIEVPEIGEDIIEIMSVARDPGSRAKISVRS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP GAC+GMRG+RV AV EL EKID+V+W + A +V NA+ PA V+K++++E Sbjct: 244 KDRRIDPRGACIGMRGARVMAVSNELAGEKIDVVLWDENLAQYVNNAMEPAEVSKIIINE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I+V V E L+LAIGR GQNVRLASQ+ GW + ++TE E + + + + F+ Sbjct: 304 DSHTIDVAVADENLALAIGRNGQNVRLASQILGWNLKVMTESEMEEGLKAEEGKVIKTFV 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 A+N+D+ A L + GF +EE+A V I E SIEG D ETA+ +Q AR+ L Sbjct: 364 DALNIDDEFAEALSSVGFTTLEEIAYVPIEEFESIEGIDRETAIILQENARKALA----E 419 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 ++K++E G SE L + GIDS + + L GIK E+LA +VDDLL Sbjct: 420 REEKLKESG-SESLTKLEGIDSDLAMKLVAVGIKDPEELAEQAVDDLLDIE--------- 469 Query: 484 FDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 G +++ +I+ AR W + EK Sbjct: 470 --------GMTEEKAGQIIMAAR-NECWFKDEK 493 >gi|238020478|ref|ZP_04600904.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147] gi|237867458|gb|EEP68464.1| hypothetical protein GCWU000324_00360 [Kingella oralis ATCC 51147] Length = 500 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 192/518 (37%), Positives = 306/518 (59%), Gaps = 28/518 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS-DIRVEINPETGDISLFRLL 66 E+L +A+A+A EK++ ++V + ++ AA+ D+ + I+ ETGD R Sbjct: 4 EILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTIRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I I G + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181 R+AER++ F + I++GTVKR+E ++V+L D +I R++ + REN R GDR Sbjct: 124 RDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRGGDR 183 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ + + QVLLSRT P F+ +LF EVPEI +G++++K V+RDPG RAK+A Sbjct: 184 IRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++V Sbjct: 244 VLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D+++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+T +E + Sbjct: 304 IDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAAARN 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ + V E IA LV EGF VEE+A V SE+ +EGFD E A ++ +ARE + Sbjct: 364 LFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVVLKA 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + K+ E + E+L ++ G+D + L E I + +DLA S+ +L+ + Sbjct: 424 AEEAEAKLNE--IDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVA 518 G ++ E I+ AR W +E A Sbjct: 476 -----------GVSHEEAEKAILAARAH--WFAEEDNA 500 >gi|93004904|ref|YP_579341.1| transcription elongation factor NusA [Psychrobacter cryohalolentis K5] gi|92392582|gb|ABE73857.1| NusA antitermination factor [Psychrobacter cryohalolentis K5] Length = 494 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 185/514 (35%), Positives = 292/514 (56%), Gaps = 30/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + D++ + + ++RV I+ TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRTTGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ IG + + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAITD--LDQEEWSIGDIKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER+ F+ +VGE++ G VK+ I+DLG++ +G + RD+ + RE LR R Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I+AL PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISALEPADVSSIIL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE + + + Sbjct: 302 DEDTQTADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEEYQQRQANESKAFIE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + VD+ +A LV GF +EE+A V + IEG D+E IQ RA+E + Sbjct: 362 LFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDEAIDMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL + G+ + + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + +I+ AR W + Sbjct: 474 -----------DLDTETAGKLIMKARES--WFNE 494 >gi|332968911|gb|EGK07958.1| N utilization substance A [Kingella kingae ATCC 23330] Length = 499 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 182/515 (35%), Positives = 309/515 (60%), Gaps = 28/515 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+L +A+A+A EK++D +VV + ++ AA+ ++ V I+ ETG+ R Sbjct: 4 EILALAEALASEKNVDPNVVFEALETALGIAAKKKADREHMNLEVRIHRETGEYKTVRKW 63 Query: 67 EVVEEVEN--YTCQISLKVARDRDP--SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +VE+++ + +++ ++ P I++G + +P FGR A Q+AKQ+I+QK+ Sbjct: 64 LIVEDLDYTYPELEKTIEQIQEEQPGIEIEVGDYYEEEIPNEAFGRQAAQTAKQIILQKI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDR 181 R+AER++ F +++ GTVKRVE ++V++ D +I R+ + REN R GD+ Sbjct: 124 RDAEREQILNGFLANREDVVVGTVKRVERHGIVVEIAPKLDALIPREHMLPRENYRGGDK 183 Query: 182 VKSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ V QV+LSR +F+ KLF EVPEI +GI++++ V+RDPG RAK+A Sbjct: 184 IRALFLKVEEFNGGRKQVMLSRASTEFLRKLFEQEVPEIRDGILEIREVARDPGQRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V ++D IDP G C+G+RGSRV AV E+ E+ID+V+WS D+A FVINAL PA V+++V Sbjct: 244 VHTNDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVSRIV 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +++++ ++VIV ++QL+LAIGR GQNVRLA++LTG ++I+TE+E ++ Sbjct: 304 INDEMQSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTEQEAEQRNAEEELALRD 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FM + DE +A LVA F +EE+A V +S++ ++G D+ TA ++ +ARE L Sbjct: 364 LFMSQLGADESVALALVAAEFTSIEEVAFVPMSDLTDLDGVDDATAENLRNKAREVLLQT 423 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ ++K+ ++++L ++ G+D + L + I +DLA S+D+L+ + Sbjct: 424 ELEAEEKLN--SIADDLRNLDGLDDDMLRDLVDANITNRDDLAELSIDELIEIT------ 475 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G K++ E +I+ AR W + Sbjct: 476 -----------GVSKEEAEQVILTARAH--WFADD 497 >gi|71064649|ref|YP_263376.1| transcription elongation factor NusA [Psychrobacter arcticus 273-4] gi|71037634|gb|AAZ17942.1| NusA antitermination factor [Psychrobacter arcticus 273-4] Length = 494 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 184/514 (35%), Positives = 292/514 (56%), Gaps = 30/514 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + D++ + + ++RV I+ TGD +R Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEDALVVSTKKKVYTDQPEVEVRVSIDRATGDYDTYR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ IG V + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAITD--LDQDEWSIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 REAER+ F+ +VGE++ G VK+ I+DLG++ +G + RD+ + RE LR R Sbjct: 122 REAERNLVADAFEPRVGEMMYGEVKKQTRDGYIIDLGDNAEGYLSRDQMLPREQLRAKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + +Y V RE RG Q+LLSRTHP+ + L EVPEI I++++ V+R PG+RAK+AV Sbjct: 182 INAILYHVNRENRGAQLLLSRTHPEMLSALMQKEVPEIAEQIIEIRNVARLPGTRAKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A F+I++L PA V+ ++L Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVVVWSDDPAQFIISSLEPADVSSIIL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ EEE + + + Sbjct: 302 DEDTQSADIIFSTNDQLARAIGSQGQNVRLASELTGYKLNMMLEEEYQQRQANESKAFIE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + VD+ +A LV GF +EE+A V + IEG D++ IQ RA+E + Sbjct: 362 LFYERLEVDKDLAQALVDIGFTSIEEVAYVPVETFYDIEGLDDDAIDMIQERAKEVVIAD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 ++ Q+ ++E S+EL + G+ + + I T++DLA +V DL Sbjct: 422 ELVKQQNMKE--PSQELQDLEGMTVSWAYKMAQKDIITVDDLAEQAVFDLEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 + +I+ AR W + Sbjct: 474 -----------DLDTETAGKLIMKARES--WFNE 494 >gi|118602111|ref|YP_903326.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567050|gb|ABL01855.1| NusA antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 491 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 187/516 (36%), Positives = 291/516 (56%), Gaps = 32/516 (6%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + EL + +A++ EK+I ++ VL + +++ A + D VEIN +TG+ F Sbjct: 1 MDGKELFLMVEAISNEKNISKEEVLESLEEALAIATKKR--NNIDAYVEINRQTGEFLTF 58 Query: 64 RLLEVVEE----VENYTCQIS--LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 R VV + V++ + L V + + V P+ FGR+A Q KQV Sbjct: 59 RQWMVVADGETFVDDDGTEFDSELHVYAKDASGVAVDDYVRKPIETQKFGRIAAQIVKQV 118 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENL 176 I+QKVREAER+ ++ ++GE++ TVKRV+ GNV VD G DG+I + + I E++ Sbjct: 119 IVQKVREAEREVIVNDYSSRIGEVVMVTVKRVDRGNVYVDTGGGVDGMIPKFDLIPNESV 178 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R DR+++YI +V+ RG Q+ LSR+ P+ M++LF MEVPEI G++++ SRDPG R Sbjct: 179 RKNDRLRAYIKEVKPSVRGAQIFLSRSMPEMMIELFKMEVPEISEGVIEIMGGSRDPGLR 238 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V Sbjct: 239 SKLAVRAKDRRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDHAQFVINAMAPAQV 298 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + +++DED +++ V +QL+LAIGR GQN++LAS+LTGW +++++ + + ++ Sbjct: 299 SSIIVDEDKHSMDIAVEDDQLALAIGRGGQNIKLASRLTGWRLNVMSTTQADEKQAQETL 358 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + + VD +A +L+ EGF V EL + +IE FD E+Q RA + Sbjct: 359 KISDKLADQLGVDSEVAGVLIEEGFGSVGELVDADAQVLENIEEFDASMVEELQERASDA 418 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 + + SE L S+ G+ + AL E I T++DLA S+DDLL Sbjct: 419 QLVQA------LGDAEASELLMSVEGVGEDLASALIEADIVTVDDLAELSIDDLLDIQ-- 470 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + S+I+ AR GW Sbjct: 471 ---------------NMDTEIASSVIMIARENEGWF 491 >gi|260550521|ref|ZP_05824731.1| transcription termination/antitermination L factor [Acinetobacter sp. RUH2624] gi|260406436|gb|EEW99918.1| transcription termination/antitermination L factor [Acinetobacter sp. RUH2624] Length = 494 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 194/516 (37%), Positives = 294/516 (56%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLDHEKAGQLIMKARES--WFN 494 >gi|262280758|ref|ZP_06058541.1| transcription termination/antitermination L factor [Acinetobacter calcoaceticus RUH2202] gi|299771783|ref|YP_003733809.1| transcription elongation factor NusA [Acinetobacter sp. DR1] gi|262257658|gb|EEY76393.1| transcription termination/antitermination L factor [Acinetobacter calcoaceticus RUH2202] gi|298701871|gb|ADI92436.1| transcription elongation factor NusA [Acinetobacter sp. DR1] Length = 494 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 194/516 (37%), Positives = 295/516 (57%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD S Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYST 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---LDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRMNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 361 YLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 --------------GLDHEKAGQLIMKARES--WFN 494 >gi|148244225|ref|YP_001218919.1| transcription termination factor NusA [Candidatus Vesicomyosocius okutanii HA] gi|146326052|dbj|BAF61195.1| transcription termination factor NusA [Candidatus Vesicomyosocius okutanii HA] Length = 491 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 183/516 (35%), Positives = 294/516 (56%), Gaps = 31/516 (6%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + EL + +A++ EK+I ++ VL + ++ A + D VEIN +TG+ F Sbjct: 1 MDGKELFLMVEAISNEKNISKEEVLESLEKALAIATKKR--NNIDAYVEINRQTGEFLTF 58 Query: 64 RLLEVVEE----VENYTCQISLK--VARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 R VV + V++ + L+ + + + + P+ +FGR+A Q KQV Sbjct: 59 RQWMVVADGELFVDDDGTEFDLELHIYEKDTDGLVVDDYMRKPIETQEFGRIAAQIVKQV 118 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 IIQKVREAER+ ++ ++GE+I TVKRV+ GN+ VD+G DG+I + + I E++R Sbjct: 119 IIQKVREAEREVIVNDYSSRIGEVIMVTVKRVDRGNIYVDMGGVDGMIPKFDLIPNESVR 178 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 DR+++YI +V+ RG Q+ LSR+ + M++LF MEVPEI G++++ SRDPG R+ Sbjct: 179 KNDRLRAYIKEVKSSIRGVQIFLSRSVSEMMIELFKMEVPEISAGVIEIMGGSRDPGLRS 238 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ Sbjct: 239 KLAVRAKDKRIDPIGSCIGMRGARVQAVSNELNAERVDIILWDEDPAQFVINAMAPAEVS 298 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++DE+ +++ V EQL+LAIGR GQN++LAS+LTGW +++++ + + ++ + Sbjct: 299 SIIVDENKHSMDIAVEDEQLALAIGRGGQNIKLASRLTGWKLNVMSTIQADEEQVQEMQK 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + + VD +A +L+ EGF V+EL + +IE FD E+Q RA + Sbjct: 359 ISDKLADQLGVDSEVAGVLIEEGFDSVDELVDADTQVLGNIEEFDASMVEELQERASDAQ 418 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + + SE L S+ G++ + L E I T++DLA S+D+LL Sbjct: 419 LVQA------LGDAEASEILMSVEGVNEDLASVLIEVDIFTVDDLAELSIDELLDIQ--- 469 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + S+I+ AR GW + Sbjct: 470 --------------DMDIEIASSIIMTARENEGWFD 491 >gi|293610134|ref|ZP_06692435.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827366|gb|EFF85730.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124307|gb|ADY83830.1| nusA; transcription elongation factor NusA [Acinetobacter calcoaceticus PHEA-2] Length = 494 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 191/515 (37%), Positives = 291/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKRFYEGTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 RV + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRVNAILYNVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDARSADIIFATSDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 421 TDALKQQENIQE--PSADLLTMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 -------------GLGHEKAGQLIMKARES--WFN 494 >gi|184156669|ref|YP_001845008.1| transcription elongation factor NusA [Acinetobacter baumannii ACICU] gi|332873077|ref|ZP_08441034.1| transcription termination factor NusA [Acinetobacter baumannii 6014059] gi|183208263|gb|ACC55661.1| Transcription elongation factor [Acinetobacter baumannii ACICU] gi|322506556|gb|ADX02010.1| nusA [Acinetobacter baumannii 1656-2] gi|323516435|gb|ADX90816.1| transcription elongation factor NusA [Acinetobacter baumannii TCDC-AB0715] gi|332738589|gb|EGJ69459.1| transcription termination factor NusA [Acinetobacter baumannii 6014059] Length = 494 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 192/515 (37%), Positives = 289/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 421 TDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 -------------GLGHDKAGQLIMKARES--WFN 494 >gi|169634554|ref|YP_001708290.1| transcription elongation factor NusA [Acinetobacter baumannii SDF] gi|169153346|emb|CAP02459.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter baumannii] Length = 494 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 190/515 (36%), Positives = 289/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VV ++ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTVVADDDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 421 TDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 -------------GLGHEKAGQLIMKARES--WFN 494 >gi|169797408|ref|YP_001715201.1| transcription elongation factor NusA [Acinetobacter baumannii AYE] gi|213155778|ref|YP_002317823.1| transcription elongation factor NusA [Acinetobacter baumannii AB0057] gi|215484847|ref|YP_002327084.1| Transcription elongation protein nusA [Acinetobacter baumannii AB307-0294] gi|239500931|ref|ZP_04660241.1| transcription elongation factor NusA [Acinetobacter baumannii AB900] gi|260556300|ref|ZP_05828519.1| transcription termination factor NusA [Acinetobacter baumannii ATCC 19606] gi|301346315|ref|ZP_07227056.1| transcription elongation factor NusA [Acinetobacter baumannii AB056] gi|301513268|ref|ZP_07238505.1| transcription elongation factor NusA [Acinetobacter baumannii AB058] gi|301596448|ref|ZP_07241456.1| transcription elongation factor NusA [Acinetobacter baumannii AB059] gi|332855373|ref|ZP_08435838.1| transcription termination factor NusA [Acinetobacter baumannii 6013150] gi|332867631|ref|ZP_08437763.1| transcription termination factor NusA [Acinetobacter baumannii 6013113] gi|169150335|emb|CAM88232.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter baumannii AYE] gi|193076182|gb|ABO10797.2| transcription termination/antitermination L factor [Acinetobacter baumannii ATCC 17978] gi|213054938|gb|ACJ39840.1| transcription elongation factor NusA [Acinetobacter baumannii AB0057] gi|213986270|gb|ACJ56569.1| Transcription elongation protein nusA [Acinetobacter baumannii AB307-0294] gi|260410355|gb|EEX03654.1| transcription termination factor NusA [Acinetobacter baumannii ATCC 19606] gi|332727505|gb|EGJ58931.1| transcription termination factor NusA [Acinetobacter baumannii 6013150] gi|332733825|gb|EGJ64972.1| transcription termination factor NusA [Acinetobacter baumannii 6013113] Length = 494 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 191/515 (37%), Positives = 289/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRRTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 RV + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRVNAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDAKSADIIFATNDQLARAIGSQGQNVRLASDLTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+E S +L ++ G+ S+I +L GI T++DLA + DD+ Sbjct: 421 TDALKQQENIQE--PSADLLNMEGMTSEIAYSLAARGIITVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 -------------GLGHEKAGQLIMKARES--WFN 494 >gi|254700792|ref|ZP_05162620.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] gi|261751301|ref|ZP_05995010.1| transcription elongation protein nusA [Brucella suis bv. 5 str. 513] gi|261741054|gb|EEY28980.1| transcription elongation protein nusA [Brucella suis bv. 5 str. 513] Length = 356 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 259/354 (73%), Positives = 309/354 (87%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EKSIDR++VL+ MAD+IQKAARS YG S+IR +IN ++G+I Sbjct: 3 VSANRLELLQIADAVAREKSIDREIVLAAMADAIQKAARSRYGQESNIRADINAKSGEIK 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVVE VE+Y QISL +ARDR+P +G ++D LPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVENVEDYATQISLFMARDRNPDAQVGDFIADQLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQY E+KD+VGEI++GTVKRVEYGNVIVDLG + ++RRDE I RE R GDR Sbjct: 123 VREAERDRQYDEYKDRVGEIVNGTVKRVEYGNVIVDLGRGEAIVRRDELIPREAFRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +++Y+YDVRREQRGPQ+ LSRTHPQFM KLF MEVPEIY+GI+++K+V+RDPGSRAK+AV Sbjct: 183 IRAYVYDVRREQRGPQIFLSRTHPQFMAKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D+SIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVL Sbjct: 243 VSRDASIDPVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVL 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 DED RIEV+VP +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F Sbjct: 303 DEDAERIEVVVPNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEF 356 >gi|119713529|gb|ABL97582.1| transcription elongation factor NusA [uncultured marine bacterium EB0_35D03] Length = 491 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 189/516 (36%), Positives = 309/516 (59%), Gaps = 31/516 (6%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + EL + +A++ EK+I +D V+ + +++ A + D+RVE++ +G+ + F Sbjct: 1 MDGKELFLMIEAISNEKNITKDDVIESLEEALAVATKKR--NNIDVRVEVDRHSGEFNTF 58 Query: 64 RLLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 R +V+E+ E + T L + + +++ V +P+ M+FGR+A Q AKQV Sbjct: 59 RRWQVIEDGEQFVDDDGNTFDSELHIYQAESGGLEVDAYVEEPMESMEFGRIAAQVAKQV 118 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 IIQKVREAER F +VGE++ TVKRV+ GNV VD+G DG+I + + I E++R Sbjct: 119 IIQKVREAERTVVVDNFTQRVGEVVMATVKRVDRGNVFVDMGGIDGMISKYDLIPNESIR 178 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 DR+++YI +V+ RG Q+ LSRT M++LF MEVPEI G++++KA +RDPG R+ Sbjct: 179 KNDRLRAYIKEVKSTPRGAQIFLSRTVNDMMIELFEMEVPEISEGVIEIKAGARDPGLRS 238 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV + D IDP+G+C+GMRG+RVQAV EL E++DI++W D A FVINA+ PA V+ Sbjct: 239 KLAVKAKDKRIDPIGSCIGMRGARVQAVSNELNGERVDIILWDEDPAQFVINAMAPAEVS 298 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DE+ G +++ V ++QL+LAIGR GQN++LAS+LTGW +++++ + + K+ + Sbjct: 299 SIVVDEEKGSMDIAVEEDQLALAIGRGGQNIKLASKLTGWKLNVMSLADADDMQAKELQK 358 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + + + VD +A +L+ EG+ ++E+A + ++ IE FD E E+Q RA++ Sbjct: 359 TGEKLAEKLGVDAEVAGVLIDEGYTSLDEIADAESDVLSKIEEFDSEMVGELQERAQDA- 417 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 L K + + +E L + G+D + +L + I T+E LA ++ +LL Sbjct: 418 -----QLVKALNDSEATEILLGVEGVDDALANSLVDAEITTVEALAELAIVELLEIQ--- 469 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 D ++I+ AR K GW + Sbjct: 470 --------------DVGNDNASAIIMAAREKEGWFD 491 >gi|262374026|ref|ZP_06067303.1| transcription termination factor NusA [Acinetobacter junii SH205] gi|262311037|gb|EEY92124.1| transcription termination factor NusA [Acinetobacter junii SH205] Length = 494 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 296/516 (57%), Gaps = 35/516 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYEGTHSEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 FR VV E+ E CQ ++ DPS IG V + ++FGR+A Q AKQVI+ Sbjct: 64 FRQWTVVADEDHEMPACQDAISD---VDPSKWSIGDVRELEVESIEFGRIAAQIAKQVIV 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRP 178 QK+REAER ++ KVGE+I G VK+ I+DLG++ + + R+ETI +E LRP Sbjct: 121 QKIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRP 180 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+ + +Y V RE RG Q+LLSR+ P+ ++ L E+PEI I+++KA +R PG RAK Sbjct: 181 KQRINAILYSVNREGRGAQLLLSRSRPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAK 240 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ Sbjct: 241 IAVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSG 300 Query: 299 VVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 301 IVLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQ 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F+ +++DE +A LV GF +EE+A V IE + + +Q RA+E Sbjct: 361 YLDMFVSRLDIDEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LEADLVELLQSRAKEAA 419 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ Sbjct: 420 LTDALKQQENIQE--PSAELLGMEGMTTEIAYALAARGVITIDDLADQATDDISDIE--- 474 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 --------------GLGHDKAGQLIMKARES--WFN 494 >gi|255319713|ref|ZP_05360921.1| transcription termination/antitermination, L factor [Acinetobacter radioresistens SK82] gi|262380005|ref|ZP_06073160.1| transcription termination factor NusA [Acinetobacter radioresistens SH164] gi|255303242|gb|EET82451.1| transcription termination/antitermination, L factor [Acinetobacter radioresistens SK82] gi|262298199|gb|EEY86113.1| transcription termination factor NusA [Acinetobacter radioresistens SH164] Length = 494 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 188/515 (36%), Positives = 291/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTTAEEARLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR EVV E+ E CQ ++ IG + + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWEVVADEDHEMPACQDAISDV--DPAKWSIGDIRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I++E LRP Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRINAILYSVNREGRGAQLLLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ E+E +Q + + Sbjct: 302 VLDEDTHSADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEDEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEVAYVPAETFDEIE-LDTELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I++ SEEL ++ G+ +I +L G+ T++DLA + DD+ Sbjct: 421 ADALKQQENIQD--PSEELLNMEGMTREIAYSLAARGVVTVDDLADQATDDIADIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +I+ AR W Sbjct: 475 -------------GLDAASAGQLIMKARES--WFN 494 >gi|294649082|ref|ZP_06726525.1| transcription elongation factor NusA [Acinetobacter haemolyticus ATCC 19194] gi|292825028|gb|EFF83788.1| transcription elongation factor NusA [Acinetobacter haemolyticus ATCC 19194] Length = 494 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 192/515 (37%), Positives = 293/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAQWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+ETI +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ Sbjct: 421 TDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 -------------GLGHDKAGQLIMKARES--WFN 494 >gi|50083628|ref|YP_045138.1| transcription elongation factor NusA [Acinetobacter sp. ADP1] gi|49529604|emb|CAG67316.1| transcription termination/antitermination, L factor (N utilization substance protein A) [Acinetobacter sp. ADP1] Length = 494 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 186/515 (36%), Positives = 292/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVSREAIFEALEQALVAATKKKFYEGTNAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR +V E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTLVADEDHEMPACQDAISDV--DASKWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I++E LRP Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + +Y V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRMNAILYSVNREGRGAQLLLSRARPEMLMALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 302 VLDEDTRSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D+E +Q RA+E Sbjct: 362 LDMFVTRLDIEEDLAMALVEMGFTSLEEIAYVPPETFDEIE-LDQELVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ ++E V L ++ G+ ++ AL G+ T++DLA + DD+ Sbjct: 421 TDALKQQENVQEPSVE--LLAMAGMTQELAYALAARGVVTVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +I+ AR W Sbjct: 475 -------------GLSEEKAGQLIMKARES--WFN 494 >gi|226951828|ref|ZP_03822292.1| transcription elongation factor [Acinetobacter sp. ATCC 27244] gi|226837368|gb|EEH69751.1| transcription elongation factor [Acinetobacter sp. ATCC 27244] Length = 494 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 193/515 (37%), Positives = 293/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L +A+ V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVAETVSNEKGVSREAIFQALEQALVAATKKKFYENTHAEEAQLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR VV E+ E CQ ++ IG V + ++FGR+A Q AKQVI+Q Sbjct: 64 FRQWTVVADEDHEMPACQDAISDV--DPAQWSIGDVRELEVESIEFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+ETI +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREETIHKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+ + +Y+V RE RG Q+LLSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRINAILYNVNREGRGAQLLLSRARPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 VLDED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + E Sbjct: 302 VLDEDARSADIIFATNDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYRARQQNEAQEY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D + +Q RA+E Sbjct: 362 LDMFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDADLVELLQSRAKEAAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+E S EL + G+ ++I AL G+ T++DLA + DD+ Sbjct: 421 TDALKQQENIQE--PSAELLGMDGMTTEIAYALAARGVITVDDLADQATDDISDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G D+ +I+ AR W Sbjct: 475 -------------GLGHDKAGQLIMKARES--WFN 494 >gi|262370081|ref|ZP_06063408.1| transcription termination/antitermination protein [Acinetobacter johnsonii SH046] gi|262315120|gb|EEY96160.1| transcription termination/antitermination protein [Acinetobacter johnsonii SH046] Length = 494 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 185/515 (35%), Positives = 293/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TG+ S Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTNSEEAQLRVEIDRKTGEYST 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR EVV E+ E CQ ++ IG + +P +DFGR+A Q AKQVI+Q Sbjct: 64 FRQWEVVADEDHEMPACQDAISDV--DPAQWSIGDIRELEVPSIDFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I++E LRP Sbjct: 122 KIREAERALIADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIAKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 RV + +++V RE RG Q+ LSR P+ ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRVNAILFNVNREGRGAQLQLSRAKPEMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSGI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+DE+ ++I +QL+ AIG +GQNVRLAS+LTG+ ++++ E+E +Q + + Sbjct: 302 VIDEEERTADIIFATSDQLARAIGSQGQNVRLASELTGYKLNMMLEDEYHARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ ++++E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDLFVSRLDIEEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAEVVELLQSRAKEVAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I++ S EL ++ G+ +I AL G+ T++DLA + DD+ Sbjct: 421 ADALQQQENIQD--PSAELVAMEGMTQEIAYALAARGVITIDDLADQATDDIADIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 ++ +I+ AR W Sbjct: 475 -------------SLGTEKAGQLIMKARES--WFN 494 >gi|262377017|ref|ZP_06070243.1| transcription termination factor NusA [Acinetobacter lwoffii SH145] gi|262308055|gb|EEY89192.1| transcription termination factor NusA [Acinetobacter lwoffii SH145] Length = 494 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 189/515 (36%), Positives = 289/515 (56%), Gaps = 33/515 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-----GTMSDIRVEINPETGDISL 62 E+L + + V+ EK + R+ + + ++ A + + + +RVEI+ +TGD Sbjct: 4 EILTVVETVSNEKGVPREAIFEALEQALVAATKKKFYEGTHSEEARLRVEIDRKTGDYRT 63 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 FR EVV E+ E CQ ++ IG + + +DFGR+A Q AKQVI+Q Sbjct: 64 FRQWEVVADEDHEMPACQDAISDV--DPAKWSIGDIRELEVESIDFGRIAAQIAKQVIVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPG 179 K+REAER ++ KVGE+I G VK+ I+DLG++ + + R+E I +E LRP Sbjct: 122 KIREAERALVADAYESKVGELIYGEVKKQTKDGFIIDLGDNAEAYLAREEMIPKEILRPK 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 RV + +++V RE RG Q+ LSR P ++ L E+PEI I+++KA +R PG RAK+ Sbjct: 182 QRVNAILFNVNREGRGAQLQLSRAKPDMLIALMKKEIPEISEEIIEIKAAARQPGVRAKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGAC+GMRG+R+QAV EL E+ID+VVWS D A ++ +AL PA V+ + Sbjct: 242 AVKTNDHRIDPVGACIGMRGTRIQAVQQELNGERIDVVVWSDDPAQYIASALEPADVSSI 301 Query: 300 VLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V+DED ++I +QL+ AIG +GQNVRLAS+LTG+ +D++ EEE +Q + + Sbjct: 302 VIDEDARTADIIFATSDQLARAIGSQGQNVRLASELTGYKLDMMLEEEYYARQQNEAQQY 361 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 F+ +++ E +A LV GF +EE+A V IE D E +Q RA+E Sbjct: 362 LDMFVTRLDIAEDLAMALVEMGFTSLEEIAYVPAETFDEIE-LDAELVELLQSRAKEIAL 420 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + Q+ I+ SEEL ++ G+ +I AL G+ T++DLA + DD+ Sbjct: 421 ADALQQQENIQA--PSEELVAMEGMTVEIAQALAARGVVTVDDLADQATDDIEDIE---- 474 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G ++ +I+ AR W Sbjct: 475 -------------GLGAEKAGQLIMKARES--WFN 494 >gi|33519578|ref|NP_878410.1| transcription elongation factor NusA [Candidatus Blochmannia floridanus] gi|33517241|emb|CAD83624.1| transcription pausing; L factor [Candidatus Blochmannia floridanus] Length = 501 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 178/513 (34%), Positives = 301/513 (58%), Gaps = 19/513 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + + V+ EK++ ++ + + ++ A R Y DIRV I+ ++G IS FR Sbjct: 2 NKEILAVVEVVSNEKAVPKEKIFLALEMALAAATRKKYSQDIDIRVSIDRKSGKISTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +V T +++L+ A+ + I I V D + + F R+ Q+AKQVIIQK+REA Sbjct: 62 WVVVNQVIQPTREMTLEAAQLENLEIKINDYVEDIVESVTFDRITTQTAKQVIIQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER +F + GEI++G +K++ +V VDLGN+ +G+I+R+E + REN R GDR++ Sbjct: 122 ERMIIIEQFLSRQGEIVTGIIKKISRYSVSVDLGNNAEGIIKREEMLPRENFRVGDRIRG 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 +Y V+ + +G + +SRT + +++LF +EVPEI ++ ++A +RDPGSR+K+AV ++ Sbjct: 182 ILYLVKTDSKGSNLFISRTCTEMLIELFRIEVPEIGEELITIQAAARDPGSRSKIAVKTN 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDP+GACVGMRG+RVQAV +EL E++D+++W + FV+NA+ PA + +++DED Sbjct: 242 DKRIDPIGACVGMRGARVQAVSSELGGERVDVILWDDNPVQFVVNAMIPADIVSMIVDED 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +++ V + L+ IGR GQN+RL SQL W ++++T E RQ + FM+ Sbjct: 302 KHTMDIAVEESNLAQIIGRNGQNIRLISQLIDWELNVMTVVELEKKRQSEDRNILDIFMR 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 +N++E A +L+ GF+ +EELA + ISE+ SI FD+E ++ +A++ L+ + Sbjct: 362 VLNINEESAKVLIDSGFSSLEELAYIPISELLSIGVFDKEEIDLLRFKAKDALKDLSNKD 421 Query: 425 QKKIRELGVS--EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 ++ EL + + +I + L GI +EDLA + L G Sbjct: 422 NNDDNSTIMNSVSELLKLSSLKYEIALKLINYGIYKLEDLAEQDIVSLSGI--------- 472 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 L ++++ +I+ AR + W + Sbjct: 473 ------KDLNLTEEEIGELIMEAR-NICWFNHD 498 >gi|148284846|ref|YP_001248936.1| transcription elongation factor NusA [Orientia tsutsugamushi str. Boryong] gi|146740285|emb|CAM80660.1| N utilization substance protein A, transcription termination factor [Orientia tsutsugamushi str. Boryong] Length = 500 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 209/509 (41%), Positives = 324/509 (63%), Gaps = 14/509 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+ E+L++ + +A +K I +D ++S++ + IQ ++ YG +I+VEIN ++G+ Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKKYGAEHNIKVEINKKSGEC 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q Sbjct: 61 KLYRVLDVVEETEDMCSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARYFIAQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A Sbjct: 181 RIKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTISIKAVARDPGSRAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS DSSID VG+C+GMRG+R++ + EL E+I+++ W+ D A F INA+ P +TKV+ Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISNELSGERINVIKWNQDIAGFAINAMSPVQITKVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE+IV QLS++IGRRGQNVRL S+L GW IDIITEE++S R +F T Sbjct: 301 IDESRHLIELIVSANQLSISIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +DE++A LLVAEG +E++A ++ + SI+ + E +E+Q +A +Y+ Sbjct: 361 LFTKNLGIDEMLAQLLVAEGLISIEQIAHADLNVLTSIDRLNSELVLELQQKAIDYVNNQ 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K+ ELGV +EL I + + L ENGIK +EDL + + Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSE----------- 469 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKM 509 F+ + + +++ +I+ + + Sbjct: 470 ---FNTLVPNNCLSEEEFNYIILTNKKHL 495 >gi|258545583|ref|ZP_05705817.1| N utilization substance A [Cardiobacterium hominis ATCC 15826] gi|258519283|gb|EEV88142.1| N utilization substance A [Cardiobacterium hominis ATCC 15826] Length = 496 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 205/511 (40%), Positives = 301/511 (58%), Gaps = 26/511 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLL 66 +LL I +AVA EK +DR V++ + ++ A R Y +V INP TG+ FRL Sbjct: 4 DLLNIIEAVANEKEVDRSVIIEALEAALAAATRKRYPDEEIGAKVVINPRTGEYKSFRLW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VV++ +EN ++ VA P +G V P+ FGR++ Q AKQ+IIQK Sbjct: 64 TVVDDEAILENPDAEMRESVAAIEFPEAHLQVGDVHEVPIENEPFGRISAQQAKQIIIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER + Y +F + G ++ G V+R E GNVIVD+ ++ I RD I RE+LR GDR Sbjct: 124 LREAERRKVYDQFIAEEGTLVHGIVRRHERGNVIVDINGAEATILRDGMIPRESLRIGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V E RGPQ+ +SR P+ + +LF +EVPEI +GI+++ V+RDPG RAK+AV Sbjct: 184 IRGYLAKVNLEMRGPQLEVSRVAPEMLKQLFTLEVPEIGSGIIEIMGVARDPGLRAKIAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG+RGSRVQ V+ EL E+IDIV+W D T+V A+ PA +T Sbjct: 244 RTFDPRIDPVGACVGIRGSRVQGVMNELAGERIDIVLWDEDPETYVRKAMAPAQITNAAA 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE +++ VP+ +L A+GR GQNVRLAS+LTGWTI++++E E ++ + + Q Sbjct: 304 DEARRVMDIAVPENKLPQAVGRGGQNVRLASELTGWTINVLSEAEFEARQEAVQDAQEQA 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 +A++VD+ IA +L+ G+ E +A + E+ IE FDEET + RA +YL Sbjct: 364 LAEALDVDDEIADILIDAGYTAPEMVAYAERDELLGIEAFDEETVDALMARAADYLLQQA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 + + E + L ++ GID AL ENG+ T EDLA +VD+L+ ++ Sbjct: 424 FVAEVEPEE-EMQLPLENVEGIDEATIAALQENGLHTQEDLAELAVDELVAYT------- 475 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G K+Q ++I+ AR W Sbjct: 476 ----------GLDKEQASALILKAREP--WF 494 >gi|146329748|ref|YP_001208968.1| transcription termination factor [Dichelobacter nodosus VCS1703A] gi|146233218|gb|ABQ14196.1| transcription termination factor [Dichelobacter nodosus VCS1703A] Length = 495 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 193/511 (37%), Positives = 300/511 (58%), Gaps = 26/511 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66 ELL I +AVA EK +DR+V+ + ++ A R +G + RV I+ ++G+ FR+ Sbjct: 4 ELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETFRVW 63 Query: 67 EVVEE---VENYTCQISLKVARDRDPSIDI--GGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++V++ +EN +I VA P D+ G + + + FGR++ Q AKQ+IIQK Sbjct: 64 KIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQIIIQK 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER++ Y +F ++ G ++ G V+R E GN IVDLG +G I R++ I RE LR GDR Sbjct: 124 LREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLGGVEGTILRNDMIPREPLRSGDR 183 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + Y+ V RE RGPQ+ +SR P+ +++LF EVPEI +G++++ +RDPG RAK++V Sbjct: 184 ILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRAKISV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG+RGSRVQ VV EL E+IDIV+W D+ T+V A+ PA+++ + Sbjct: 244 RTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVISDTCV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E I++ VP+E+L A+GR GQNVRLAS+LTGWTI++++E E + Q + + Q Sbjct: 304 NEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSAQEQS 363 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++VDE +A L+A G E +A E+ +I+ FD E ++ RA Y+ Sbjct: 364 LSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYVMVEA 423 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++ E + + + G+DS + L GI T EDLA SV++L+ Sbjct: 424 FK-EEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNT----- 477 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 +++ ++I+ AR W Sbjct: 478 ------------TQNEAAALILKAREP--WF 494 >gi|189183523|ref|YP_001937308.1| transcription elongation factor NusA [Orientia tsutsugamushi str. Ikeda] gi|189180294|dbj|BAG40074.1| N utilization substance protein A [Orientia tsutsugamushi str. Ikeda] Length = 500 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 213/509 (41%), Positives = 327/509 (64%), Gaps = 14/509 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV+ E+L++ + +A +K I +D ++S++ + IQ ++ +YG +I+VEIN ++G+ Sbjct: 1 MVNPINAEVLRVVNYIARDKDISQDALISIVEEMIQLISKKIYGAEHNIKVEINKKSGEC 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+R+L+VVEE E+ QISL A + +I +G + + LPP++ GRV+ Q+A+ I Q Sbjct: 61 KLYRVLDVVEETEDMYSQISLNDALQLNANIKVGEQIFETLPPINLGRVSAQTARHFIAQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+ E ER +QYLE KD+VGEII+ V R++ GN+I + G + +I RD+ I E + D Sbjct: 121 KIAEIERRKQYLEVKDRVGEIITVIVSRIDAGNIIGEFGGVEVIIPRDQLIKSEAYKKND 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK+Y+ V E +GP + LSRT Q +VKL MEVPEIY G + +KAV+RDPGSRAK+A Sbjct: 181 RVKAYVQRVNEELKGPLMFLSRTDNQMLVKLLEMEVPEIYEGTIIIKAVARDPGSRAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS DSSID VG+C+GMRG+R++ + EL E+I+++ WS D A F INA+ P +TKV+ Sbjct: 241 VFSPDSSIDAVGSCIGMRGNRIKNISHELAGERINVIKWSQDIAGFAINAMSPVQITKVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE IE+IV QLS+AIGRRGQNVRL S+L GW IDIITEE++S R +F T Sbjct: 301 IDESRRLIELIVSANQLSIAIGRRGQNVRLVSKLLGWNIDIITEEQESSRRTDEFTSATD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +DE++A LLVAEGF +E++A ++ + SI+ + E +E+Q +A +Y+ Sbjct: 361 LFTKNLGIDEMLAQLLVAEGFISIEQIAHADLNALTSIDKLNSELVLELQQKAIDYVNNQ 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + K+ ELGV +EL I + + L ENGIK +EDL + + Sbjct: 421 NKLILTKLEELGVEQELLETLEIPLESFITLAENGIKNLEDLEELTFSE----------- 469 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKM 509 F+ + + +++ +I+ + ++ Sbjct: 470 ---FNTLVQNNCLSEEEFNYIILTNKKRL 495 >gi|296113981|ref|YP_003627919.1| transcription termination/antitermination protein NusA [Moraxella catarrhalis RH4] gi|295921675|gb|ADG62026.1| transcription termination/antitermination protein NusA [Moraxella catarrhalis RH4] gi|326559307|gb|EGE09734.1| transcription elongation factor NusA [Moraxella catarrhalis 7169] gi|326564317|gb|EGE14547.1| transcription elongation factor NusA [Moraxella catarrhalis 103P14B1] gi|326565082|gb|EGE15275.1| transcription elongation factor NusA [Moraxella catarrhalis 46P47B1] gi|326567250|gb|EGE17370.1| transcription elongation factor NusA [Moraxella catarrhalis 12P80B1] gi|326568244|gb|EGE18326.1| transcription elongation factor NusA [Moraxella catarrhalis BC8] gi|326569945|gb|EGE19992.1| transcription elongation factor NusA [Moraxella catarrhalis BC1] gi|326570023|gb|EGE20069.1| transcription elongation factor NusA [Moraxella catarrhalis BC7] gi|326572881|gb|EGE22866.1| transcription elongation factor NusA [Moraxella catarrhalis CO72] gi|326573671|gb|EGE23629.1| transcription elongation factor NusA [Moraxella catarrhalis O35E] gi|326574706|gb|EGE24642.1| transcription elongation factor NusA [Moraxella catarrhalis 101P30B1] Length = 493 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 185/513 (36%), Positives = 287/513 (55%), Gaps = 30/513 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 E+L + + V+ EK ++ + + + ++ + + IRV I+ +TG+ FR Sbjct: 4 EILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKVYTEQPEVAIRVHIDRKTGNYDTFR 63 Query: 65 LLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV E+ E CQ+++ + IG V + + ++FGR+A AKQVIIQK+ Sbjct: 64 YWTVVADEDHEMPACQLAISDLDEN--EWQIGDVKEEQIESIEFGRIAATQAKQVIIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 REAER F+ ++G++ISG +K+ IVDLG +G + +D+T+ RE LR R Sbjct: 122 REAERALVADAFESRIGDLISGEIKKQSRDAYIVDLGEGGEGYLAKDQTLPRETLRVKSR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V + + V R+ R PQ++LSRT + ++ L + EVPEI I++++ V+R PG RAK++V Sbjct: 182 VSAILSQVNRDGRSPQLMLSRTSNEMLIALMNKEVPEISEQIIEIRDVARLPGLRAKISV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++D IDPVGAC+GMRG+R+QAV EL E+ID++VW+ D A ++I+AL PA V +VL Sbjct: 242 KTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVIVWNEDPAQYIISALEPADVIGLVL 301 Query: 302 DEDVGRIEVIV-PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DED EVI +QL+ AIG +GQNVRLAS+LTG+ +++I E E S + + Sbjct: 302 DEDAKTAEVIFATNDQLARAIGSQGQNVRLASELTGYKLNMILESEYSERQASENQAVID 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + + +D +A +L GFAD+E +A + E I+G D+ET IQ RA+E + Sbjct: 362 LFYERLELDRDLAEVLAEVGFADIETVAYAPVEEFYEIDGLDDETITAIQERAKEVIISD 421 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 +I Q+ I+E S EL ++ + I L E I T++DLA ++ D+ Sbjct: 422 EIAKQQNIKE--PSAELLALEDMTPAIAYKLAERDIITLDDLAEQAIFDIEDIE------ 473 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G I+ AR W E Sbjct: 474 -----------GLNSQSAGKFIMAARQS--WFE 493 >gi|88657698|ref|YP_507374.1| transcription elongation factor NusA [Ehrlichia chaffeensis str. Arkansas] gi|88599155|gb|ABD44624.1| N utilization substance protein A [Ehrlichia chaffeensis str. Arkansas] Length = 517 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 211/524 (40%), Positives = 340/524 (64%), Gaps = 32/524 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG ++ +R Sbjct: 8 DNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYG-NCKIKVTVDKKTGVVATYR 66 Query: 65 LLEVVEE------VENYTCQI-----------SLKVARDRDPSIDIGGVVSDPLPPMDFG 107 + V+ E +I +L A+ D ++++G ++ +PLP +D Sbjct: 67 QVLVINNNGDISVPEGKENEIDFSDVSKYKLITLAEAKQIDKNVEVGDIMLEPLPVIDLD 126 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 + + AKQ I Q + ER +QY +FKD+VG+I+ GT KR+EY NVIVDL ++G + Sbjct: 127 YSSAKIAKQKIAQVIISEERKKQYEDFKDRVGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +K Sbjct: 187 SNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTIK 246 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F+ Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKFI 306 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E + Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDETE 366 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 S + K+ + ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A Sbjct: 367 SSRKAKELSAGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAE 426 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 E++ RA +YL D +++ + L V +++ +P + +AL +NGI ++ED+AG Sbjct: 427 ELKSRAADYLVRKDAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLCT 486 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 D+ + + KDQV+S+I+ +R K+GW Sbjct: 487 DEFFDI--------------IPDIALTKDQVDSVILESRKKIGW 516 >gi|269958718|ref|YP_003328505.1| transcription elongation factor [Anaplasma centrale str. Israel] gi|269848547|gb|ACZ49191.1| transcription elongation factor [Anaplasma centrale str. Israel] Length = 524 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 215/523 (41%), Positives = 336/523 (64%), Gaps = 30/523 (5%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG IS+ R Sbjct: 17 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVISISR 75 Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 VV + ++ + I + A + +G ++ +PLPP+D + Sbjct: 76 QALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKDVKVGDILLEPLPPVDVDYNS 135 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T Sbjct: 136 AKVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 195 Query: 171 ISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV +KA+ Sbjct: 196 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 255 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A FV++ Sbjct: 256 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 315 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S Sbjct: 316 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 375 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE+ Sbjct: 376 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 435 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 + RA EYL + ++ + VSEE+ +P ++ + V L E GI+ +ED+A D+ Sbjct: 436 KKRAAEYLVRRREEALEILKSMSVSEEVLELPYLEIEDVVKLCEGGIRNVEDIASMCTDE 495 Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + K+QV+S+I+ +R +MGW+ Sbjct: 496 FYD--------------TVPKARLSKEQVDSIILESRRRMGWV 524 >gi|260893511|ref|YP_003239608.1| NusA antitermination factor [Ammonifex degensii KC4] gi|260865652|gb|ACX52758.1| NusA antitermination factor [Ammonifex degensii KC4] Length = 365 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 234/354 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E LQ + E+ + +V+LSV+ ++ A R +GT + RVEI+ TG+ + Sbjct: 2 NAEFLQALRDLERERGLKTEVLLSVIEAALLSAYRRNFGTAQNARVEIDRTTGECRVLAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ +ISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q+++EA Sbjct: 62 RTVVEEVKDPRTEISLAEAREIDPRYQVGDVVEIEVTPRDFGRIAAQTAKQVVMQRIKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y F + G+I++GTV R + NV +DLG ++ ++ E I E R GDRV++Y Sbjct: 122 ERNMIYEAFAGREGDIVTGTVHRADKQNVYLDLGKTEAILPAAEQIPGERYRQGDRVRAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VRR +GPQ++LSRTHP F+ +L +EVPE+ G V++K + R+PGSR+K+AV+S D Sbjct: 182 ILEVRRTPKGPQIILSRTHPGFLRRLLELEVPELQEGTVELKNLVREPGSRSKVAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RGSR+QAVV ELR EKID+V W PD + F+ AL PA VT V + E+ Sbjct: 242 PHVDPVGACVGPRGSRIQAVVNELRGEKIDVVRWDPDPSRFIAEALSPAKVTAVEIWEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + +++ Sbjct: 302 KIARVIVPDNQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYAREYASYY 355 >gi|167630355|ref|YP_001680854.1| transcription termination factor nusa [Heliobacterium modesticaldum Ice1] gi|167593095|gb|ABZ84843.1| transcription termination factor nusa [Heliobacterium modesticaldum Ice1] Length = 442 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 161/430 (37%), Positives = 254/430 (59%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E L + EK I ++++L + ++ A + +G++ ++RV I+ TG+ ++ Sbjct: 2 NVEFLTALKDLEREKGISKEILLEAIEAALISAYKKNFGSLQNVRVHIDRSTGEFKVYSR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEE+ + ++ L A+ DP+ + V+ + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KLIVEELTDPRVEVLLADAQRIDPNYQVNDVIETEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ G+I++G V+R E NV VDLG + ++ E ++ E R DR+K+Y Sbjct: 122 ERGMIYEEFSNREGDIVTGIVQRTENKNVFVDLGKVEALLAPSEQMNGETYRHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQVL+SRTHP + +LF +EVPEI++G V++KA SR+ G+R+K+AV+S D Sbjct: 182 IVEVKKTTKGPQVLISRTHPGLLKRLFELEVPEIHDGTVELKAASREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQAVV EL+ EKIDIV W+PD A FV NAL PA V V + E+ Sbjct: 242 ENVDPVGACVGPKGMRVQAVVNELKGEKIDIVKWNPDPAKFVANALSPAKVVSVDIIEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + + + Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTAKAAFIDHDENYDAEY 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 + DE + +E A + + +D + E D + Sbjct: 362 EDFDEQVGEDYNEAYDDAYDEEAYDDAYDGTYDDNYDCYEEYPEEYEDGYEEEADDAKIP 421 Query: 426 KKIRELGVSE 435 + EL + Sbjct: 422 QDFPELTNDK 431 >gi|222475232|ref|YP_002563648.1| transcription termination factor nusA (nusA) [Anaplasma marginale str. Florida] gi|255003215|ref|ZP_05278179.1| transcription elongation factor NusA [Anaplasma marginale str. Puerto Rico] gi|255004343|ref|ZP_05279144.1| transcription elongation factor NusA [Anaplasma marginale str. Virginia] gi|222419369|gb|ACM49392.1| transcription termination factor nusA (nusA) [Anaplasma marginale str. Florida] Length = 515 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 213/523 (40%), Positives = 337/523 (64%), Gaps = 30/523 (5%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG +S+ R Sbjct: 8 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVVSISR 66 Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 VV + ++ + + + A + +G ++ +PLPP+D + Sbjct: 67 QALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDVDYNS 126 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T Sbjct: 127 AKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 186 Query: 171 ISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV +KA+ Sbjct: 187 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 246 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A FV++ Sbjct: 247 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 306 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S Sbjct: 307 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 366 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE+ Sbjct: 367 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 426 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 + RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A D+ Sbjct: 427 KKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASMCTDE 486 Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + K+QV+S+I+ +R +MGWI Sbjct: 487 FYDM--------------VPKARLSKEQVDSIILESRKRMGWI 515 >gi|56416867|ref|YP_153941.1| transcription elongation factor NusA [Anaplasma marginale str. St. Maries] gi|56388099|gb|AAV86686.1| transcription termination factor A [Anaplasma marginale str. St. Maries] Length = 515 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 212/523 (40%), Positives = 337/523 (64%), Gaps = 30/523 (5%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG +S+ R Sbjct: 8 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVVSISR 66 Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 VV + ++ + + + A + +G ++ +PLPP+D + Sbjct: 67 QALVVNDDMSFDSEQYGIPPGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDVDYNS 126 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + A+Q + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T Sbjct: 127 AKVARQKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 186 Query: 171 ISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 I E RP DRVK+++ +VR+E+ GPQ+ LSR +FM LF E+PE+Y+GIV +KA+ Sbjct: 187 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 246 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+EL EKID+V++S D A FV++ Sbjct: 247 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 306 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 A+ PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S Sbjct: 307 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 366 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE+ Sbjct: 367 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 426 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 + RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A D+ Sbjct: 427 KKRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASMCTDE 486 Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + K+QV+S+I+ +R ++GWI Sbjct: 487 FYDM--------------VPKARLSKEQVDSIILESRKRVGWI 515 >gi|213425433|ref|ZP_03358183.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 431 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 278/447 (62%), Gaps = 24/447 (5%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREAER +F Sbjct: 2 PTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 61 Query: 135 KDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPGDR++ +Y Sbjct: 62 RDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYA 121 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+AV ++D I Sbjct: 122 VRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI 181 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V+DED + Sbjct: 182 DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTM 241 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 ++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + + F + +++ Sbjct: 242 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDI 301 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + + + Sbjct: 302 DEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASL 361 Query: 429 RELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488 + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 362 GDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE-------------- 407 Query: 489 SSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 408 ---GLTDEKAGELIMAAR-NICWFGDE 430 >gi|304316865|ref|YP_003852010.1| NusA antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778367|gb|ADL68926.1| NusA antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 345 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 154/344 (44%), Positives = 227/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + +K I +D + + ++ A + YGT +++V+++ ETGD+ ++ Sbjct: 2 NSEFIEALDQICKDKGIPKDTMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N +ISL+ A+ +G VV + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KTVVENVYNDLFEISLEDAQKLSKKYQVGDVVDIEVTPKSFGRIAAQNAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F K EI++G V+R+E NV+VDLG ++ + +E I E GDR+K Y Sbjct: 122 ERGIVYEDFLSKESEIVTGIVERIERKNVLVDLGKAEATLTPNEQIPNETYNHGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYTKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE Sbjct: 242 ENVDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 302 KIARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSESASKS 345 >gi|56419795|ref|YP_147113.1| transcription elongation factor NusA [Geobacillus kaustophilus HTA426] gi|56379637|dbj|BAD75545.1| transcription termination-antitermination factor [Geobacillus kaustophilus HTA426] Length = 383 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 161/370 (43%), Positives = 233/370 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F Sbjct: 2 NTQLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KDVVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K Y Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSLDFSD 361 Query: 366 INVDEIIAHL 375 D + Sbjct: 362 AAADNENSEE 371 >gi|78042921|ref|YP_360589.1| transcription elongation factor NusA [Carboxydothermus hydrogenoformans Z-2901] gi|77995036|gb|ABB13935.1| transcription termination factor NusA [Carboxydothermus hydrogenoformans Z-2901] Length = 346 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 154/341 (45%), Positives = 237/341 (69%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E LQ + +K I +V+L ++ A + YG + RV I+ TG++ ++ L Sbjct: 2 NTEFLQAVQEIEKQKGIPAEVLLEATEQALLSAYKKNYGINQNARVHIDRVTGEVKVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ +ISL+ AR++DP +++G V+ + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVKDPRLEISLEEAREKDPRLNLGDVLEIEVTPRNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER++ Y EF + G+II+G ++RV+ NV VDLG ++ ++ E I EN + GDR+K+Y Sbjct: 122 ERNQIYEEFSSREGDIITGIIRRVDQKNVYVDLGKTEAILPPQEQIPGENYKFGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GP ++LSRTHP + +L +E+PE+Y+G V++K+++R+ GSR+K+AV+S D Sbjct: 182 LVEVKKTSKGPNIILSRTHPGLLKRLLELEIPELYDGTVELKSIAREAGSRSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DP+GACVG +G R++ +V EL EKID+V WSPD A F+ NAL PA VT V + ED Sbjct: 242 ENVDPIGACVGNKGLRIKNIVEELNGEKIDVVKWSPDPAKFIANALSPAKVTSVEVFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQ 342 >gi|301063436|ref|ZP_07203968.1| transcription termination factor NusA [delta proteobacterium NaphS2] gi|300442375|gb|EFK06608.1| transcription termination factor NusA [delta proteobacterium NaphS2] Length = 474 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 192/429 (44%), Positives = 273/429 (63%), Gaps = 4/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L ++ D V+ EK +D+ V++ + ++++ AAR YG D+ V N E G++ F E Sbjct: 4 DLRKVIDQVSREKGVDQAVLIGALEEAVKAAARKKYGNEYDLEVIYNEEMGEVEAFEFKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE EN QISLK A + DP +IG + + P FGR+A QSAKQVI+Q+++EAER Sbjct: 64 VVEETENPNLQISLKEALELDPETEIGDSLGIKMDPDTFGRIAAQSAKQVIMQRLKEAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y +F D+ GEI++G V+R + G++IV+LG ++ + E I RE+ + GDRV++YI Sbjct: 124 DIVYDDFIDRRGEIVNGIVQRFDRGSIIVNLGRAEAELPHKEQIPRESYKQGDRVRAYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DVR+ RGPQ++LSRTHP + LF EVPEI GIVQ+ V+R+PG RAK+AV S D Sbjct: 184 DVRKISRGPQIILSRTHPNIVAILFENEVPEISEGIVQIIQVAREPGGRAKIAVSSKDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G RVQAVV ELR EKIDIV W PDSA F+ NAL PA +T+V++DED Sbjct: 244 VDPVGACVGMKGRRVQAVVQELRGEKIDIVTWDPDSAKFICNALAPAEITRVIVDEDNHS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QLSLAIG+RGQNVRLA++LTGW +D++ E + + + F Sbjct: 304 MEVVVPDDQLSLAIGKRGQNVRLAAKLTGWRLDVVGETKYNETLKDGFRSLLDLN----G 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E IA L F ++A + ++ ++G +E A + A YL ++ Sbjct: 360 VGEKIATELYDADFRSARDIAGSTVEDLMVVKGISQEKAEALIAEANAYLLAKSQETKED 419 Query: 428 IRELGVSEE 436 ++ Sbjct: 420 APGETDPDD 428 >gi|261419460|ref|YP_003253142.1| transcription elongation factor NusA [Geobacillus sp. Y412MC61] gi|297530565|ref|YP_003671840.1| transcription termination factor NusA [Geobacillus sp. C56-T3] gi|319766275|ref|YP_004131776.1| NusA antitermination factor [Geobacillus sp. Y412MC52] gi|261375917|gb|ACX78660.1| NusA antitermination factor [Geobacillus sp. Y412MC61] gi|297253817|gb|ADI27263.1| transcription termination factor NusA [Geobacillus sp. C56-T3] gi|317111141|gb|ADU93633.1| NusA antitermination factor [Geobacillus sp. Y412MC52] Length = 383 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 161/370 (43%), Positives = 233/370 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I ++VV+ + +I A + +G ++RV++N +TG I +F Sbjct: 2 NTQLLEALADLMREKGISKEVVMEAIEAAIVSAYKRNFGQAQNVRVDLNMDTGTIRVFTR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KDVVEEVADPRLEISLEDAQRINPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+RV+ V V LG ++ ++ +E + E +P DR+K Y Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPRGQRVQAIVDELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSLDFSD 361 Query: 366 INVDEIIAHL 375 D + Sbjct: 362 AAADNENSEE 371 >gi|138894780|ref|YP_001125233.1| transcription elongation factor NusA [Geobacillus thermodenitrificans NG80-2] gi|196247596|ref|ZP_03146298.1| NusA antitermination factor [Geobacillus sp. G11MC16] gi|134266293|gb|ABO66488.1| N utilization substance protein A [Geobacillus thermodenitrificans NG80-2] gi|196212380|gb|EDY07137.1| NusA antitermination factor [Geobacillus sp. G11MC16] Length = 383 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 156/370 (42%), Positives = 233/370 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL+ + EK I ++V++ + ++ A + +G ++RV++N +TG I + Sbjct: 2 NTQLLEALADLMREKGISKEVIMEAIEAALVSAYKRNFGQAQNVRVDLNMDTGTIRVLAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ A+ +P+ IG VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KDVVEEVTDPRLEISLEEAQRLNPNYQIGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R++ V V LG ++ ++ +E + E +P DR+K Y Sbjct: 122 ERSIIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKAEALLPANEQMPNETYKPHDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQA+V EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAIVDELHGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E T Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREMGIDPHAPSTSLDFDG 361 Query: 366 INVDEIIAHL 375 + D + Sbjct: 362 VTADNENSDE 371 >gi|88607683|ref|YP_505048.1| transcription elongation factor NusA [Anaplasma phagocytophilum HZ] gi|88598746|gb|ABD44216.1| N utilization substance protein A [Anaplasma phagocytophilum HZ] Length = 514 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 207/522 (39%), Positives = 331/522 (63%), Gaps = 29/522 (5%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A VA ++ +D V++ + +++ + YG S I+V I+ +TG IS+ R Sbjct: 8 DNLELIRVARDVAEQRGLDLGVIVEAIEQALEVVSHVKYG-DSKIKVSIDRKTGVISVAR 66 Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 + VV++ + + + + A +++G ++ +PLPP+D + Sbjct: 67 QVLVVKDDFTFDSEECGIAAEEVNKYKLVRISDALADGEQVEVGDILLEPLPPIDIDYNS 126 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + AKQ + Q + ER RQY EFKD+VG+++ G VKRVEY N+IVDL S+G + T Sbjct: 127 AKLAKQKVAQLIMMQERKRQYEEFKDRVGDLVYGVVKRVEYNNIIVDLNGSEGYLPVYNT 186 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 I E RP RVK+++ DVRRE GPQ+ LSR +FM LF E+ E+Y+GIV +KA++ Sbjct: 187 IRGEVFRPNARVKAHVEDVRREATGPQIFLSRVSKRFMELLFKQEISEVYDGIVTIKALA 246 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 RD GSR+K+AV+SSD ++DPVGAC+G RG R+Q +V EL EKID++ +SPD A FV++A Sbjct: 247 RDAGSRSKVAVYSSDKNVDPVGACIGARGVRIQNIVAELNGEKIDVIPYSPDLAKFVVSA 306 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + PA V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW+ID+I +E +S Sbjct: 307 IAPAEVVKVIIDEDVEKIELVVPESQVSLAIGRYGQNIRLASELVGWSIDVIGDETESTR 366 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + K+ + + F++ ++V+EII LLV+EGF+ +E+L ++ +IA+++GF+EE A E++ Sbjct: 367 KAKELSSGAKVFVEDLDVEEIIGQLLVSEGFSSIEDLDRAEVGDIAAVDGFNEEIARELK 426 Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 RA E L + + + VSEE+ +P + + V L ENG++++ED+A D+ Sbjct: 427 TRAAECLARKRKEAIEMLESMSVSEEVMQLPFLQVEDIVKLSENGVRSVEDIASLCTDEF 486 Query: 471 LGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 K+QV+S+I+ +R ++GW+ Sbjct: 487 YDIVPRAK--------------LSKEQVDSVILESRKRVGWV 514 >gi|218782565|ref|YP_002433883.1| transcription elongation factor NusA [Desulfatibacillum alkenivorans AK-01] gi|218763949|gb|ACL06415.1| NusA antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 488 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 194/430 (45%), Positives = 283/430 (65%), Gaps = 5/430 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ ++ D V+ +K ID++V+++ + +++Q AAR G +DI V+ N E G++ +F+ E Sbjct: 5 DIGRVIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFRE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++S++ R+ DP ++G + + FGR+A QSAKQVIIQK+++AER Sbjct: 65 VVEEVTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y F D+ GEII+G ++R++ G++IV+LG ++GV+ E + RE GDR++++I Sbjct: 125 DAVYSSFMDRKGEIINGIMQRMDRGDIIVNLGQTEGVLPSREQVPRETYHRGDRIRAFIL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV E RGPQ++LSRTHP F+ LF MEVPEI G+V V A +R+PG RAK+AV SSDS Sbjct: 185 DVVLEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSDSD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVGM+GSRVQ VV ELR EKIDIV W DSA FV NAL PA +++V++DE+ Sbjct: 245 IDAVGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEENHA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIVP E LS+AIG++GQNVRLAS+LTGW +D+ +E S + M+ Sbjct: 305 MEVIVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKSETRYSR----TMQDGYNSLMELAE 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 +DE IA L +GF VEEL+ ++ I+G D A + A+E + + + Q Sbjct: 361 LDENIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEAMASMAMEKQAS 420 Query: 428 I-RELGVSEE 436 +E +E+ Sbjct: 421 APQEAEAAED 430 >gi|255658253|ref|ZP_05403662.1| transcription termination factor NusA [Mitsuokella multacida DSM 20544] gi|260849564|gb|EEX69571.1| transcription termination factor NusA [Mitsuokella multacida DSM 20544] Length = 378 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 154/356 (43%), Positives = 232/356 (65%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E L + EK ID +V+ + ++ A + +G+ ++RV ++ ETG ++ Sbjct: 11 NGQEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYA 70 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VVE+ E+ +ISL AR P ++G V+ + P +FGR+A Q+AKQV++Q++RE Sbjct: 71 IKTVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIRE 130 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF + G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+ Sbjct: 131 AERGIIYEEFMSREGDILTGLVERVENHNVYIDLGKTEAVLTPAEQIPTETYAHGDRIKA 190 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V++ +GPQ+++SRTHP + +LF +EVPEI GIV++K+V+R+PG+R+K+AV+S Sbjct: 191 YVVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSK 250 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVG+CVG RG RVQ++V EL EKIDIV WS + A F+ NAL PA V V ++E Sbjct: 251 DENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNET 310 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + Sbjct: 311 EKVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAADEELDANMNEVE 366 >gi|323705403|ref|ZP_08116978.1| transcription termination factor NusA [Thermoanaerobacterium xylanolyticum LX-11] gi|323535305|gb|EGB25081.1| transcription termination factor NusA [Thermoanaerobacterium xylanolyticum LX-11] Length = 345 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 151/344 (43%), Positives = 227/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + +K I ++ + + ++ A + YGT +++V+++ ETGD+ ++ Sbjct: 2 NTEFIEALEQICKDKGIPKETMFEAIEAALVSAYKKNYGTAQNVKVKMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N +ISL+ A+ +G V + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KTVVENVYNDLLEISLEEAQKLSKKYLVGDTVDIEVTPKSFGRIAAQNAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F K EI++G V+R+E NV+VDLG ++ + +E I E + GDR+K Y Sbjct: 122 ERGIVYEDFLSKESEIVTGIVERIEKKNVLVDLGKTEATLTPNEQIPNETYKHGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF MEVPE+ GIV+++++SR+PGSR K+AV++ D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFEMEVPELQQGIVEIRSISREPGSRTKMAVYAKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG +G+RVQAVV EL+ EKIDIV WS FV NAL PA V + +DE Sbjct: 242 ENVDPVGSCVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFVTNALSPAKVLSIDIDEKE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQNVRLA++LTGW IDI +E Sbjct: 302 KIARVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDITSESTAKS 345 >gi|313901626|ref|ZP_07835063.1| NusA antitermination factor [Thermaerobacter subterraneus DSM 13965] gi|313468107|gb|EFR63584.1| NusA antitermination factor [Thermaerobacter subterraneus DSM 13965] Length = 473 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 166/344 (48%), Positives = 236/344 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ ETG+I + Sbjct: 2 NAEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRETGEIRVVAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ + QIS+ AR+ DP G VV + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RDVVEEVEDPSTQISVAEAREIDPRYKPGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF + G+I++G V+RV+ NV VDLG ++ V+ E I E RPGDR+K Y Sbjct: 122 ERDLIYEEFIAREGDIVTGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D Sbjct: 182 IVEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG+RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ + Sbjct: 242 ERVDPVGACVGPRGARVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + + Sbjct: 302 RVARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAAE 345 >gi|57239198|ref|YP_180334.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Welgevonden] gi|58579156|ref|YP_197368.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Welgevonden] gi|58617209|ref|YP_196408.1| transcription elongation factor NusA [Ehrlichia ruminantium str. Gardel] gi|57161277|emb|CAH58198.1| putative N utilization substance protein A [Ehrlichia ruminantium str. Welgevonden] gi|58416821|emb|CAI27934.1| Transcription elongation protein nusA [Ehrlichia ruminantium str. Gardel] gi|58417782|emb|CAI26986.1| Transcription elongation protein nusA [Ehrlichia ruminantium str. Welgevonden] Length = 517 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 211/524 (40%), Positives = 336/524 (64%), Gaps = 32/524 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A +A +K ++ DV++ + ++IQ +RS YG I+V ++ +TG IS +R Sbjct: 8 DNLELIRVAKDIADQKGLNLDVIIRAIEEAIQLTSRSRYG-NCKIKVTVDKKTGLISTYR 66 Query: 65 LLEVVEEV---------ENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFG 107 + V+ + EN I+L A+ D + +G ++ +PLP +D Sbjct: 67 QVLVISDNGEVVIPEGKENEIDHADVNKYKLITLTEAKQIDENAKLGDIMLEPLPVIDLD 126 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 + + AKQ I Q + ER +QY FKD++G+I+ GT KR+EY NVIVDL ++G + Sbjct: 127 YSSAKIAKQKIAQVIVSEERKKQYESFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 I E R GDRVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +K Sbjct: 187 SNLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRVNKGFMEQLFKQEIPEIYDGIVTIK 246 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID+V++SP+ F+ Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIAELHGEKIDVVLYSPELPKFI 306 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L W ID+I +E + Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVNWKIDVIGDETE 366 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 S + K+ ++ F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A+ Sbjct: 367 STRKAKELTVGSRIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAI 426 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 E++ RA +YL D +++ + L + +++ +P + +AL E+GI +ED+AG Sbjct: 427 ELKNRASDYLTRKDAEIKQILESLPIDKDVAVLPFLKPSDIIALSESGINNLEDIAGLCT 486 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 D+ + ++ KDQ++S+I+ +R K+GW Sbjct: 487 DEFYEI--------------VPNVALTKDQIDSIILESRRKIGW 516 >gi|212639524|ref|YP_002316044.1| transcription elongation factor NusA [Anoxybacillus flavithermus WK1] gi|212561004|gb|ACJ34059.1| Transcription elongation factor [Anoxybacillus flavithermus WK1] Length = 367 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 223/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL A+ +K I ++V++ + +I A + + ++RV+ N ETG I +F Sbjct: 2 NTELLDALTALERDKGISKEVLIEAIEAAIVSAYKRNFNQAQNVRVDFNQETGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL A+ +P+ +G VV + P +FGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVDEVYDSRLEISLDEAKRINPNYQVGDVVEIEVTPKNFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + V LG + ++ E + E +P DR+K Y Sbjct: 122 ERGVIYAEFVDREEDIMTGIVQRTDSKFIYVSLGKIEALLPVSEQMPNETYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIYVSRTHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSSDPVEFVANALSPSKVLDVIVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LT W IDI ++ E Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSQSEAEQ 345 >gi|239826654|ref|YP_002949278.1| transcription elongation factor NusA [Geobacillus sp. WCH70] gi|239806947|gb|ACS24012.1| NusA antitermination factor [Geobacillus sp. WCH70] Length = 382 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 160/368 (43%), Positives = 234/368 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL + EK I ++VV+ + +I A + +G ++RV++N ETG I +F Sbjct: 2 NTQLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNTETGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV + +ISL+ A+ +P+ IG V+ + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVDEVNDPRLEISLEEAQRINPNYQIGDVLELEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+RV+ V V LG ++ ++ E + E +P DR+K Y Sbjct: 122 ERSVIYAEFVDREEDIMTGIVQRVDPRFVYVSLGKTEALLPASEQMPNETYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LT W IDI +E E + + T + Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESEARELGIDPYAQSTFLDSEE 361 Query: 366 INVDEIIA 373 +V+ Sbjct: 362 TSVNNEND 369 >gi|295399850|ref|ZP_06809831.1| transcription termination factor NusA [Geobacillus thermoglucosidasius C56-YS93] gi|312111638|ref|YP_003989954.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1] gi|294978253|gb|EFG53850.1| transcription termination factor NusA [Geobacillus thermoglucosidasius C56-YS93] gi|311216739|gb|ADP75343.1| NusA antitermination factor [Geobacillus sp. Y4.1MC1] Length = 382 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 161/368 (43%), Positives = 233/368 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +LL + EK I ++VV+ + +I A + +G ++RV++N ETG I +F Sbjct: 2 NTQLLDALADIIREKGISKEVVMEAIEAAIISAYKRNFGQAQNVRVDLNMETGTIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + QISL+ A+ DP+ G VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVEEVTDPRLQISLEEAQRIDPNYQSGDVVELEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R++ V V LG ++G++ E + E +P DR+K Y Sbjct: 122 ERSVIYAEFVDREEDIMTGIVQRIDPRFVYVSLGKTEGLLPASEQMPNETYKPHDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+++R+ G R+K++V S + Sbjct: 182 ITKVEKTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGTVEIKSIAREAGDRSKISVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQAVV EL EKIDIV WS D FV NAL PA V +V+++E+ Sbjct: 242 PEVDPVGACVGPKGQRVQAVVEELNGEKIDIVRWSADPVEFVANALSPAKVLRVIVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LT W IDI +E E + + + + Sbjct: 302 KATTVIVPDYQLSLAIGKRGQNARLAAKLTNWKIDIKSESEARELGIDPYAQSSFLDPEE 361 Query: 366 INVDEIIA 373 ++ Sbjct: 362 TPINNEND 369 >gi|229544433|ref|ZP_04433491.1| NusA antitermination factor [Bacillus coagulans 36D1] gi|229324918|gb|EEN90595.1| NusA antitermination factor [Bacillus coagulans 36D1] Length = 399 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 156/350 (44%), Positives = 225/350 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + EK I RDV++ + ++ A R + ++R ++N G I +F + Sbjct: 4 ELVDALTILEKEKGISRDVLVEAIEAALVSAYRRNFNQAQNVRTDLNLANGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL+ A+ +PS +IG VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVFDPRLEISLEDAQKINPSYEIGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +F D+ E+++G V+R + V LG ++ ++ E E P DR+K YI Sbjct: 124 GIIYNQFIDREDEVMTGIVQRKDPRFTYVSLGKTEALLPPGEQSPNETYNPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R +GPQ+ +SRTHP + +LF +EVPEIY+GIV++++++R+ G R+K++V++ Sbjct: 184 KVERTTKGPQIFVSRTHPGLLKRLFELEVPEIYDGIVEIRSIAREAGDRSKISVYTDRPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL EKIDIV WS D A FV NAL PA V V++DE+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELHGEKIDIVKWSDDPAKFVANALSPAKVLDVLVDENNKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARESGIYPRSE 353 >gi|323701863|ref|ZP_08113533.1| transcription termination factor NusA [Desulfotomaculum nigrificans DSM 574] gi|323533167|gb|EGB23036.1| transcription termination factor NusA [Desulfotomaculum nigrificans DSM 574] Length = 386 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 155/362 (42%), Positives = 237/362 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L+ + EK I DV+L + ++ A + +G++ + RV I+ TGD ++ Sbjct: 2 NSEFLEALKDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRNTGDFKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ AR DP ++G VV + + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RTVVEEVEDDRLEISLEDARKIDPRFNLGDVVENEVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF ++ G+I++G V+R+E NV ++LG ++ ++ E + E RPGDR+K+Y Sbjct: 122 ERNIIFEEFANREGDILTGIVQRIENKNVFIELGKTEAILTPSEQMPGEEYRPGDRLKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SRTHP + +L MEVPE+Y G++++K+++R+ G R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLLEMEVPELYEGVIELKSIAREAGYRSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQ +V+EL EKIDIV W D + FV ++L PA V V + ED Sbjct: 242 ENVDPVGACVGPKGMRVQNIVSELNGEKIDIVKWDQDPSKFVASSLSPAKVVAVEVWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYPEYNQYEENPEDGD 361 Query: 366 IN 367 + Sbjct: 362 LE 363 >gi|251772259|gb|EES52829.1| transcription termination factor (NusA) [Leptospirillum ferrodiazotrophum] Length = 443 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 179/426 (42%), Positives = 255/426 (59%), Gaps = 14/426 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + D + EK I ++ ++ + +I AA+ YG + +VEI+P TG+I + L Sbjct: 3 NQELLSVIDQLHREKGIPQETLIEALQSAILTAAKKRYGGGDNFQVEIDPRTGEIQVLHL 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE V + ++SL A++ DP ++G + L DFGRVA Q+AKQVI QKVREA Sbjct: 63 RRIVEHVVSPMEEVSLAEAKESDPEAEVGDEIGAYLEIDDFGRVAAQAAKQVIFQKVREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E EF + G +++G E N I+DLG ++ V+ E I RE+ GDRVK+ Sbjct: 123 EWSVVAKEFGGRKGNVVAGVYIGQEKRNFIIDLGKTEAVLPFKEQIPRESFHRGDRVKAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R RGPQ++LSRTHP F+ +LF EVPEI G++++K V RDPG RAK+AV S D Sbjct: 183 LLDIRTTTRGPQLILSRTHPDFLARLFEKEVPEISEGLIEIKGVVRDPGERAKVAVLSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG+CVG++GSRVQA+V E+ EKIDI+ WSPD TF+ AL PA V +V E Sbjct: 243 PNIDPVGSCVGVKGSRVQAIVREIHGEKIDIIDWSPDPGTFIARALSPAKVLRVATRDSE 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 V+V +QLSL+IGRRGQNVRLA++LTGW IDI +E++ +RQ Sbjct: 303 FDKVATVVVANQQLSLSIGRRGQNVRLAAKLTGWKIDIFSEQQYEADRQARAGGDGAEEE 362 Query: 364 QA------------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + + +A L A G+ VE++A I +IA + +TA ++ Sbjct: 363 HSDAAPLLLGIEDLPGMGGNVADALKAAGYDTVEKIAEANIDDIAILPRLGPKTAAKLVE 422 Query: 412 RAREYL 417 AR++L Sbjct: 423 TARDFL 428 >gi|308173623|ref|YP_003920328.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens DSM 7] gi|307606487|emb|CBI42858.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens DSM 7] gi|328553445|gb|AEB23937.1| transcription elongation factor NusA [Bacillus amyloliquefaciens TA208] gi|328911764|gb|AEB63360.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus amyloliquefaciens LL3] Length = 373 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 232/368 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDIGIFPREHEEDDDLEPLF 363 Query: 368 VDEIIAHL 375 ++ A Sbjct: 364 MEPETAES 371 >gi|303256975|ref|ZP_07342989.1| transcription termination factor NusA [Burkholderiales bacterium 1_1_47] gi|330999163|ref|ZP_08322882.1| transcription termination factor NusA [Parasutterella excrementihominis YIT 11859] gi|302860466|gb|EFL83543.1| transcription termination factor NusA [Burkholderiales bacterium 1_1_47] gi|329575363|gb|EGG56907.1| transcription termination factor NusA [Parasutterella excrementihominis YIT 11859] Length = 499 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 174/512 (33%), Positives = 299/512 (58%), Gaps = 31/512 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--LYGTMSDIRVEINPETGDISLFRL 65 +LL + + +A+EK++D+ VVL+ + ++ A + G +DI V+++P TGD ++R Sbjct: 4 DLLTMVEVLAHEKNVDQSVVLAALESALASAVKKAEFPGEDADIVVKVDPTTGDQKVWRQ 63 Query: 66 LEVVEE---VENYTCQISLKVARDRDPS---IDIGGVVSDPLPPMDF-GRVAVQSAKQVI 118 VV + ++ QI A++ +++G V PLP ++ GR AKQVI Sbjct: 64 WLVVPDEQGLQEPDRQILQWEAKEDYSDQGEMNVGDYVRKPLPDVNVTGRRFATDAKQVI 123 Query: 119 IQKVREAERDRQYLEFKDKVGEI--ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENL 176 IQ++REAER++ EF ++ ++ ++G VKR + + I+++G D + R + I ENL Sbjct: 124 IQRLREAERNQLLNEFLERYKDVKVVTGQVKRFDKSDAIIEIGRIDARLPRHQMIPMENL 183 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 RPGDRV++Y+ + R Q+ LSRT +F+ +L VPEI G++++K ++RDPG R Sbjct: 184 RPGDRVRAYVLKIDPTSRQQQITLSRTCNEFLGELMRQVVPEINEGLLEIKGIARDPGIR 243 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV D IDP+G+C+G++GSR+Q+V EL +E+IDI+ W+ A +V++AL PA + Sbjct: 244 AKVAVQVKDKRIDPIGSCIGVKGSRIQSVSGELMNERIDIIRWADQPAEYVMSALSPATI 303 Query: 297 TKVVLDEDVGRIEVIVPK-EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +++ ED ++EV+ P + +AIG G N RLAS+LTGW I+++ +++ + R+ + Sbjct: 304 SSIIVHEDEHKVEVVTPDLDNSKIAIGSNGVNKRLASELTGWEIEVMDDDQAAKKREDEI 363 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 R Q +++DE +A +L+ G +EE+A + E+ SIE FDE+T E++ RAR Sbjct: 364 APRRQELCDRLDIDEEVAQVLIENGIETLEEVAYLPEEELLSIEQFDEDTVKELRSRART 423 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L + ++ ++ + L +PG+ +I L GIKT++ LA S D+L+ + Sbjct: 424 ALLTSALEREELLK--WADKSLVDLPGMTHEIANKLKPAGIKTLDQLADLSTDELVEMT- 480 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 G D+ ++I AR Sbjct: 481 ----------------GIDHDKAAALITKARE 496 >gi|154686077|ref|YP_001421238.1| transcription elongation factor NusA [Bacillus amyloliquefaciens FZB42] gi|154351928|gb|ABS74007.1| NusA [Bacillus amyloliquefaciens FZB42] Length = 373 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 231/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISLDDAQHIHPNYLVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V++ E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSDDPVEFVANALSPSKVLDVIVSEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDLGIYPREHEEDDDLEPLF 363 Query: 368 VDEIIAHL 375 ++ A Sbjct: 364 MEPETAES 371 >gi|227499045|ref|ZP_03929182.1| NusA antitermination factor [Acidaminococcus sp. D21] gi|226904494|gb|EEH90412.1| NusA antitermination factor [Acidaminococcus sp. D21] Length = 359 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 145/341 (42%), Positives = 222/341 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ +A EK I DV+ S + +++ A + +G+ ++RV +N E G+I ++ Sbjct: 2 NADFVRAIAQLAKEKHISPDVLYSAVEEALITAYKKNFGSTQNVRVSMNKENGEIHVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V EVEN +ISL A +P G VV + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KNIVTEVENPLTEISLDEAFKLNPRYQAGDVVEEEVTPKNFGRIAAQNAKQVIVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ D+ +I++GT++R+E N+ VDLG ++G + +E I E R+K Y Sbjct: 122 ERGMVYEKYSDRENDIVTGTIQRIEGRNIFVDLGTAEGTLLPNEQIPGETYEYHQRIKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++ Sbjct: 182 VVEVKKTTKGPQIILSRTHPGLLKRLFELEVAEIQDGTVIIDSVAREPGMRSKIAVHSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+DPVGACVG +G RVQ VV EL EKIDIV +S + +V +AL P+ V D + Sbjct: 242 PSVDPVGACVGPKGMRVQTVVDELGGEKIDIVKYSDNPEEYVASALSPSKVVSAAADAEH 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KICRVVVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342 >gi|295696156|ref|YP_003589394.1| transcription termination factor NusA [Bacillus tusciae DSM 2912] gi|295411758|gb|ADG06250.1| transcription termination factor NusA [Bacillus tusciae DSM 2912] Length = 383 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 157/345 (45%), Positives = 222/345 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ D + EK I +DV++ + ++ + + + +++RV++N ETGD+ +F Sbjct: 2 NQDFIEALDQLEREKGISKDVLIEAIEAALISGYKRNFNSAANVRVDVNRETGDVRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE + +ISL+ A P +G +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVEETADPRMEISLEAAEQISPHYTVGDIVEIEVTPKDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ D+ +I++G V+R + VDLG + ++ E I E L+ GDRVK++ Sbjct: 122 ERGLIYHEYLDREEDIVTGLVQRQDARYTYVDLGKVEALLPFHEQIPGEKLKQGDRVKAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQVLLSRTHP + +LF +EVPEIY G+V++K+V+R+ G R+K+AVFS Sbjct: 182 ITKVEKTTKGPQVLLSRTHPGLLKRLFELEVPEIYEGVVEIKSVAREAGHRSKIAVFSRK 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQ VV EL EK+DIV WS D FV NAL PA V V + ED Sbjct: 242 PEVDPVGACVGPRGMRVQHVVAELHGEKVDIVKWSEDPEEFVKNALSPAKVVSVEIAEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + N Sbjct: 302 RVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAN 346 >gi|121535260|ref|ZP_01667074.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306145|gb|EAX47073.1| NusA antitermination factor [Thermosinus carboxydivorans Nor1] Length = 348 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 150/346 (43%), Positives = 231/346 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q + + EK I +++ + ++ A + +G+ ++RV ++ TG+I ++ Sbjct: 3 NAEFMQAFEQLGKEKGIAPEILFDAIEAALISAYKRNFGSAQNVRVSLDRTTGEIHVYAR 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V++ ++SL+ AR D ++ VV + P DFGR+A Q+AKQV++Q++REA Sbjct: 63 KTVVEVVKDPRLEMSLEEARAIDVRYELDDVVEIEVTPKDFGRIAAQTAKQVVVQRIREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ +I++G V+R+E NV +DLG ++ ++ E I E + GDR+K+Y Sbjct: 123 ERGIIYEEFSNRESDIVTGIVQRIEQKNVYIDLGKAEAILTPSEQIPGEVYKHGDRLKTY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K+AV S D Sbjct: 183 IIEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREPGMRSKIAVHSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGACVG +G RVQ +V ELR EKIDIV WS D A F+ NAL PA V V ++E Sbjct: 243 ENVDAVGACVGHKGMRVQTIVNELRGEKIDIVKWSSDPAKFIANALSPAKVISVEVNETE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 303 KVSKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVQSTT 348 >gi|332976856|gb|EGK13681.1| N utilization substance protein A [Desmospora sp. 8437] Length = 377 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 150/343 (43%), Positives = 223/343 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + EK I ++V++ + ++ + + + ++RV+I+ +TG + +F Sbjct: 2 NAEFIDALNQLEKEKGISKEVLIEAIEAALISGYKRNFHSAQNVRVDIDRDTGRVRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL+ A + +PS ++ +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVEEVTDPRLEISLEAATEINPSFELDDIVEIEVTPADFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + +DLG + ++ ET+ E + DRVK+Y Sbjct: 122 ERSIIYEEFVDREADIVTGVVQRADSRHYYIDLGRVEALLPFAETMPGERFKHNDRVKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQV +SRTHP + +LF +EVPEIY GIV++++V+R+ G R+K+AV S D Sbjct: 182 ITRVEKSTKGPQVFVSRTHPGLLKRLFELEVPEIYEGIVEIRSVAREAGHRSKIAVISRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQ VV ELR EKIDIV WS + FV NAL P+ V +V + E Sbjct: 242 EQVDPVGACVGHRGMRVQTVVNELRGEKIDIVRWSDEPVEFVSNALSPSKVVRVDIREAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E Sbjct: 302 KVAQVVVPDHQLSLAIGKEGQNARLAAKLTGWKIDIKSESESD 344 >gi|332999998|gb|EGK19581.1| transcription elongation protein nusA [Shigella flexneri K-218] Length = 407 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 177/423 (41%), Positives = 265/423 (62%), Gaps = 19/423 (4%) Query: 94 GGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN 153 G V D + + F R+ Q+AKQVI+QKVREAER +F++ GEII+G VK+V N Sbjct: 2 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 61 Query: 154 VIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLF 212 + +DLGN+ + VI R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF Sbjct: 62 ISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELF 121 Query: 213 HMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +EVPEI ++++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E Sbjct: 122 RIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGE 181 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 +IDIV+W + A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLAS Sbjct: 182 RIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLAS 241 Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 QL+GW ++++T ++ Q + + F + +++DE A +LV EGF+ +EELA V + Sbjct: 242 QLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPM 301 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L Sbjct: 302 KELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLA 361 Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 G+ T+EDLA +DDL G ++ ++I+ AR + W Sbjct: 362 ARGVCTLEDLAEQGIDDLADIE-----------------GLTDEKAGALIMAAR-NICWF 403 Query: 513 EKE 515 E Sbjct: 404 GDE 406 >gi|83589895|ref|YP_429904.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073] gi|83572809|gb|ABC19361.1| NusA antitermination factor [Moorella thermoacetica ATCC 39073] Length = 362 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 154/341 (45%), Positives = 234/341 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q + EK I+ D++L + ++ A + +G++ ++RV+I +TG+I + Sbjct: 2 NSEFIQALRDLEREKGINADILLEAIEAALISAYKKNFGSLQNVRVDIQRDTGEIKVLAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV + +ISL+ AR + ++G +V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RQVVEEVTDPRQEISLEEARAINSKYELGDIVEKEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF + ++++G V+R E N+I+DLG ++ ++ E E R G+R+K Y Sbjct: 122 ERGLIYEEFIGRENDLVTGVVQRQEGKNIILDLGRAEAILLPSEQSPGETYRQGERLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +GPQ+L+SRTHP + +LF +EVPEI++GIV++K V+R+PG+R+K+AV S D Sbjct: 182 VLEVRKTNKGPQILVSRTHPGLIKRLFELEVPEIHDGIVEIKGVAREPGARSKIAVHSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G+RVQAVV ELR EK+DI+ WS D A +V N+L PA V V +DE+ Sbjct: 242 EKVDPVGSCVGPKGARVQAVVQELRGEKVDIIKWSDDPAVYVANSLSPARVLDVTVDEEN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIG+ GQN RLA+++TGW IDI E E Sbjct: 302 KVSQVIVPDNQLSLAIGKEGQNARLAARITGWKIDIKPESE 342 >gi|20807843|ref|NP_623014.1| transcription elongation factor NusA [Thermoanaerobacter tengcongensis MB4] gi|20516405|gb|AAM24618.1| Transcription terminator [Thermoanaerobacter tengcongensis MB4] Length = 346 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 153/345 (44%), Positives = 227/345 (65%), Gaps = 1/345 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I ++ + + ++ A R YGT ++++ ++ ETGD+ ++ Sbjct: 2 NAEFIEALNSICEEKGIPKETMFEAIEAALVSAYRKNYGTAQNVKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV+N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVKNDLLEISLEDARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K Y Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 ++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V + DE Sbjct: 242 PNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346 >gi|284048695|ref|YP_003399034.1| transcription termination factor NusA [Acidaminococcus fermentans DSM 20731] gi|283952916|gb|ADB47719.1| transcription termination factor NusA [Acidaminococcus fermentans DSM 20731] Length = 362 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 147/340 (43%), Positives = 226/340 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ +A EKSI DV+ S + +++ A + YG+ ++RV ++ ETG+I ++ Sbjct: 2 NADFVKAIALLAKEKSISPDVLYSAVEEALITAYKKNYGSAQNVRVSMHKETGEIHVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV + T +ISL+ A+ + G ++ + P +FGR+A Q+AKQVI+Q++REA Sbjct: 62 KNIVEEVTDPTTEISLEDAQKMNAHYQAGDILETEVTPKNFGRIAAQNAKQVIVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y + D+ +I++GTV+R+E NV +DLG ++G++ +E I E R+K Y Sbjct: 122 ERGMVYERYSDRENDIVTGTVQRIEGRNVFIDLGTAEGLLLPNEQIPHETYDYHQRLKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQ++LSRTHP + +LF +EV EI +G V + +V+R+PG R+K+AV S++ Sbjct: 182 VVEVKKTTKGPQIILSRTHPGLLKRLFELEVSEIQDGTVIIDSVAREPGMRSKIAVHSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+DPVGACVG +G RV+ +V ELR EKIDIV +S D +V NAL P+ V D+D Sbjct: 242 PSVDPVGACVGPKGMRVRTIVDELRGEKIDIVKYSEDPEEYVANALSPSKVVSARADKDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 KICRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSES 341 >gi|325290363|ref|YP_004266544.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271] gi|324965764|gb|ADY56543.1| NusA antitermination factor [Syntrophobotulus glycolicus DSM 8271] Length = 429 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 152/341 (44%), Positives = 231/341 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + EK I + + + ++ A + Y ++ ++R +++ TG+I ++ Sbjct: 2 NIEFIEAVGELEKEKGISSEKLFEAIEAALVSAYKKNYSSLQNVRPQVDRNTGEIKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV++ QISL+ A+ DP+ D+ +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KNVVEEVDDSRQQISLEEAKKIDPNYDLNDIVEFEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ ++ G+I++G V+R E NVIVDLG + V+ E I E +P +R+K+Y Sbjct: 122 ERELIYGEYINREGDIVTGVVQRYEQRNVIVDLGKVEAVLPPSEQIPGETYQPFERIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQVLLSRTHP + +LF +EVPEI++G V++KAV+R+ G+R+K+AV+S D Sbjct: 182 VVEVKKTPKGPQVLLSRTHPGLIKRLFELEVPEIHDGFVEIKAVAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +GSRVQ +V EL+ EK+DI+ WS D FV NAL PA V V + Sbjct: 242 ENVDPVGACVGPKGSRVQNIVNELKGEKMDIITWSQDPVEFVSNALSPAKVLGVFPRFED 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + Sbjct: 302 KVTLVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKNETQ 342 >gi|73667087|ref|YP_303103.1| transcription elongation factor NusA [Ehrlichia canis str. Jake] gi|72394228|gb|AAZ68505.1| Transcription termination factor NusA C-terminal duplication [Ehrlichia canis str. Jake] Length = 517 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 214/524 (40%), Positives = 343/524 (65%), Gaps = 32/524 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A +A +K ++ D+++ + ++IQ +RS YG I+V ++ +TG +S +R Sbjct: 8 DNLELIRVAKDIADQKGLNLDIIIRAIEEAIQLTSRSKYG-NCKIKVTVDRKTGVVSTYR 66 Query: 65 LLEVVEE------VENYTCQI-----------SLKVARDRDPSIDIGGVVSDPLPPMDFG 107 + V+ + EN +I +L A+ D + ++G ++ + LP +D Sbjct: 67 QVLVINDNGEIVIPENKKSEIDSSDISKYKLITLTEAKQIDENAEVGDIMLEHLPVIDLD 126 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRR 167 + + AKQ I Q + ER +QY +FKD++G+I+ GT KR+EY NVIVDL ++G + Sbjct: 127 YSSAKIAKQKIAQVIISEERKKQYEDFKDRIGDIVYGTAKRIEYNNVIVDLNGNEGYLSA 186 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 I E R GDRVK++I DVR+E GPQ+ LSR FM +LF E+PEIY+GIV +K Sbjct: 187 ANLIKGEVFRVGDRVKAHIEDVRKENSGPQIFLSRISKGFMEQLFKQEIPEIYDGIVTIK 246 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 A++RDPGSR+K+AVFSSD +IDPVGACVG RG R+Q+++ EL EKID++++SP+ A F+ Sbjct: 247 AIARDPGSRSKVAVFSSDKNIDPVGACVGARGVRIQSIIYELHGEKIDVILYSPELAKFI 306 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +NA+ PA V KV++DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW ID+I +E + Sbjct: 307 VNAIAPAEVLKVIIDEDKEKVELIIPENQLSLAIGRYGQNIRLASELIGWKIDVIGDETE 366 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 S + K+ +E ++ F++ ++V+EII LL EGF +E++ +S+IA+I+GF+EE A Sbjct: 367 SSRKAKELSEGSKIFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDIAAIDGFNEEIAE 426 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSV 467 E++ RA +YL D +++ + L V +++ ++P + +AL ENGIK++ED+AG Sbjct: 427 ELKSRAADYLTRKDAEIKQILDNLSVDKDVTTLPFLKPSDIIALSENGIKSLEDIAGLCT 486 Query: 468 DDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 D+ + ++ KDQ++S+I+ +R K+GW Sbjct: 487 DEFFDI--------------VPNIALTKDQIDSVILESRKKIGW 516 >gi|311068183|ref|YP_003973106.1| transcription elongation factor NusA [Bacillus atrophaeus 1942] gi|310868700|gb|ADP32175.1| transcription elongation factor NusA [Bacillus atrophaeus 1942] Length = 372 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 150/363 (41%), Positives = 226/363 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A DP+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISIDDAHAIDPNYVVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSNDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LT W IDI +E + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIYPRELEEDLDEPLFT 363 Query: 368 VDE 370 E Sbjct: 364 EPE 366 >gi|294670565|ref|ZP_06735444.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307690|gb|EFE48933.1| hypothetical protein NEIELOOT_02287 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 457 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 187/479 (39%), Positives = 285/479 (59%), Gaps = 30/479 (6%) Query: 47 SDIRVEINPETGDISLFRLLEVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLP 102 D RVEI+ TG+ FR +V E+ + +++ ++ P I IG + + Sbjct: 1 MDARVEIDRNTGEHRTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQIE 60 Query: 103 PMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GN 160 FGR A +AKQ+I+Q++R+AER++ +F +I+ GTVKRVE +IV+L G Sbjct: 61 NEGFGRQAAMTAKQIILQRIRDAEREKVLNDFLATREDIVIGTVKRVERHGIIVELVPGK 120 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPE 218 D +I RD++I REN R GDR+++ V + QV+LSRT +F+ KLF EVPE Sbjct: 121 LDALIPRDQSIPRENFRSGDRIRALFLRVEEIGQSGRKQVILSRTSREFLAKLFEQEVPE 180 Query: 219 IYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 I +G+++++ +RDPG RAK+AV ++D IDP G C+G+RGSRV AV E+ E+ID+V+ Sbjct: 181 IADGLLEIREAARDPGHRAKIAVKANDQRIDPQGTCIGVRGSRVNAVTNEIGGERIDVVL 240 Query: 279 WSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 WSPD+A FVINAL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLA+ LTGW Sbjct: 241 WSPDTAQFVINALSPAEVSRIVIDEDHHAVDVIVAEDQLALAIGRGGQNVRLAADLTGWQ 300 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 ++I+T E + F + ++VDE A +LV EGFA +EE+A V E+ I Sbjct: 301 LNIMTITEAEERHAAEDAALRSLFTEHLDVDEETADVLVQEGFASLEEIAYVPSEELEEI 360 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 GFD T ++ RAR+ + + ++K+ E ++E+L ++ GID + L + GI T Sbjct: 361 -GFDAATVDTLRNRARDAILTQAMAQEEKLEE--IAEDLRTLDGIDEDLLRDLAQAGITT 417 Query: 459 MEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 + LA S+D+L + + G + E +I+ AR W E ++ Sbjct: 418 RDGLAELSIDELREITGVEPG-----------------EAEKIILAARAH--WFETDEQ 457 >gi|317121853|ref|YP_004101856.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885] gi|315591833|gb|ADU51129.1| NusA antitermination factor [Thermaerobacter marianensis DSM 12885] Length = 486 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 166/344 (48%), Positives = 236/344 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + + +K ID+D +L + ++ A R +GT ++ V I+ E+G+I + Sbjct: 2 NVEFIEALEDLERQKGIDKDTLLEAIEAALVAAFRRHFGTAQNVAVRIDRESGEIRVVAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEV++ + QISL AR+ DP +G VV + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RDVVEEVQDPSTQISLAEAREIDPRYQVGDVVEQEVTPRDFGRIAAQTAKQVVLQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF + G+II+G V+RV+ NV VDLG ++ V+ E I E RPGDR+K Y Sbjct: 122 ERDLIYEEFIAREGDIITGVVQRVQGRNVFVDLGRTETVLFPSEQIPGERYRPGDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SR+HP + +LF +EVPEI++GIV++K R+PG RAK+AV + D Sbjct: 182 IVEVRKTPKGPQILISRSHPNLIKRLFELEVPEIHDGIVEIKEAVREPGVRAKVAVDTRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG RG RVQAVV ELR E+ID++ W+ + FV NAL PA VT+V+L+ + Sbjct: 242 ERVDPVGACVGPRGVRVQAVVAELRGERIDVIRWAEEPEQFVANALSPAKVTRVILEPET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI E + Sbjct: 302 RVARVIVPDHQLSLAIGKEGQNARLAARLTGWKIDIHAESQAQE 345 >gi|224367580|ref|YP_002601743.1| transcription elongation factor NusA [Desulfobacterium autotrophicum HRM2] gi|223690296|gb|ACN13579.1| NusA [Desulfobacterium autotrophicum HRM2] Length = 482 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 178/431 (41%), Positives = 278/431 (64%), Gaps = 8/431 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ++ ++ + V+ EK I+ +V++S + ++++ AA+ GT +DI V ++G++ +F+ E Sbjct: 5 DIKRVIEQVSREKGINIEVLISTIKEAVESAAKKKLGTRADIEVHYEEKSGEVEVFQFKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +++LK + DP+ +IG + + +FGR+A QSAKQVIIQK++EAER Sbjct: 65 VVLEVNDPDIELTLKDGQQYDPACEIGDSLGIKVDTSEFGRIAAQSAKQVIIQKMKEAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y F K GEII+G V+R++ GN+IV+LG ++ V+ E + RE+ R GDR+++YI Sbjct: 125 NAVYENFIHKKGEIINGIVQRIDRGNIIVNLGQAEAVLTSREQMPRESYRRGDRIRAYIL 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV E RG QV+LSRTHP+F+ KLF EVPEI GIV ++ +R+ G R+K+AV S+DS Sbjct: 185 DVLEEARGSQVILSRTHPEFVAKLFATEVPEIAEGIVTIRGTAREAGVRSKIAVSSTDSD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQ++V ELR EK+DIV W+PD A FV NAL PA + +V++DED Sbjct: 245 VDPVGACVGMKGNRVQSIVQELRGEKVDIVPWNPDVAKFVCNALAPAEIARVIIDEDNRS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIVP + LS+AIG+ GQNVRLA +LTGW +++++E+E S + + M Sbjct: 305 MEVIVPDDFLSIAIGKNGQNVRLACRLTGWHLEVMSEDEYSS----ELKQGYDSLMSIPG 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG----IDIT 423 V +A L GF+ ++++ ++ S+ E + RA++ LE Sbjct: 361 VSLALAEKLFKGGFSSFKDVSLANPGDLISVTDLSESDVEALVLRAKKMLEADHTSQVED 420 Query: 424 LQKKIRELGVS 434 +++E Sbjct: 421 GDSEVQENEPE 431 >gi|302342324|ref|YP_003806853.1| transcription termination factor NusA [Desulfarculus baarsii DSM 2075] gi|301638937|gb|ADK84259.1| transcription termination factor NusA [Desulfarculus baarsii DSM 2075] Length = 436 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 191/421 (45%), Positives = 279/421 (66%), Gaps = 4/421 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D VA EK +DR++++S + +++Q AAR G+ ++ V N E G++ +F E Sbjct: 3 ELRRMIDHVAREKGLDREILISTLEEAMQSAARRKLGSKVEVDVAYNDEIGEVEVFEFKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE+ + QI + AR DP ++G + + DFGR+A QSAKQVIIQ++++AER Sbjct: 63 VVEELTDPDTQIGFEDARRLDPDCELGDELGIKVETADFGRIAAQSAKQVIIQRMKDAER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D + +FKD+ GEII+G V+R + G+++V+LG ++ ++ E + RE RPGDRV++Y+ Sbjct: 123 DIIFEDFKDRKGEIINGIVQRFDKGSIVVNLGRTEAILLAREQVPREGYRPGDRVRAYVL 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV+R RGPQ++LSRTHP F+ LF +EVPEI GIV ++ V+R+ GSR KL V SSD Sbjct: 183 DVKRVSRGPQIILSRTHPGFVEALFELEVPEIAEGIVTIEGVAREAGSRTKLGVSSSDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+GSRVQAVV ELR EKIDI+ + D A +V+NAL PA +++VV+DE Sbjct: 243 VDPVGACVGMKGSRVQAVVQELRGEKIDIIAYDSDPARYVVNALAPAEISRVVVDESNNT 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIV E LSLAIGRRGQNVRLAS+LTGW ID+ +E + S + + + + Sbjct: 303 MEVIVADEMLSLAIGRRGQNVRLASKLTGWKIDVKSESKYSESLRDGYRSLLD----VVG 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V +I A L G+A + LA +++A++ G D+E A + AR+Y++ Sbjct: 359 VSDIGADTLFQAGYASADALAYANAADLAALPGIDDERAQRLIDDARDYIQRRRQASDAA 418 Query: 428 I 428 Sbjct: 419 R 419 >gi|52080267|ref|YP_079058.1| transcription elongation factor NusA [Bacillus licheniformis ATCC 14580] gi|52785644|ref|YP_091473.1| transcription elongation factor NusA [Bacillus licheniformis ATCC 14580] gi|319645953|ref|ZP_08000183.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2] gi|52003478|gb|AAU23420.1| NusA [Bacillus licheniformis ATCC 14580] gi|52348146|gb|AAU40780.1| NusA [Bacillus licheniformis ATCC 14580] gi|317391703|gb|EFV72500.1| transcription elongation protein nusA [Bacillus sp. BT1B_CT2] Length = 372 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 147/342 (42%), Positives = 225/342 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV++N +TG I +F + Sbjct: 4 ELLDALTVLEKEKGISKDIIIEAIEAALISAYKRNFNQAQNVRVDLNRDTGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISIEDAVNINPNYIVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ E + E +P DR+K +I Sbjct: 124 GVIYSEFIDREEDIMTGIVQRIDNKFIYVSLGKIEALLPVAEQMPNEVYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 IDPVGACVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARE 345 >gi|332184778|gb|AEE27032.1| Transcription termination protein NusA [Francisella cf. novicida 3523] Length = 489 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 163/515 (31%), Positives = 296/515 (57%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSENEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y +IVDLGN+ +G++ + + I+RE R GD+++ Sbjct: 124 FEREKTARFYQNKIGDIVYGEIKRATYEILIVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + + V+LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVESVECDDSGKPNTVMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASTLIGWKINVLSDAEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + ++Q ++I+ AR W E Sbjct: 469 ------------VDMDEEQATNLIMQARAP--WFE 489 >gi|258516334|ref|YP_003192556.1| transcription elongation factor NusA [Desulfotomaculum acetoxidans DSM 771] gi|257780039|gb|ACV63933.1| NusA antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 235/362 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L + EK I DV++ + ++ A + +G++ + RV I+ ETGD ++ Sbjct: 2 NTEFLDALRELEREKGIAVDVLIDAIEAALLSAYKRNFGSLQNARVHIDRETGDFKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EEV++ +I+L A+ DP ++G VV + + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RTVTEEVQDDRLEITLADAQKIDPRFELGDVVENEVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y F + +II+G V+R+E N+ ++LG ++ ++ E + E + GDR+K+Y Sbjct: 122 ERNIIYETFSSRESDIITGVVQRIEQKNIYIELGKTEAILTPSEQMPNETYKHGDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+ +SRTHP + +LF +EVPE+ GIV++K+V+R+ G+R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQIYVSRTHPGLLKRLFELEVPELEEGIVELKSVAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQ +V EL EKIDI+ W PD++ +V ++L PA V V + ED Sbjct: 242 ENVDPVGACVGPKGARVQNIVNELNGEKIDIIKWDPDASKYVASSLSPAKVVAVEIWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LTG IDI +E + + + + E A Sbjct: 302 KVARVVVPDYQLSLAIGKEGQNARLAAKLTGCKIDIKSESQMAALYPEGYGEAYDEESHA 361 Query: 366 IN 367 N Sbjct: 362 HN 363 >gi|302389798|ref|YP_003825619.1| transcription termination factor NusA [Thermosediminibacter oceani DSM 16646] gi|302200426|gb|ADL07996.1| transcription termination factor NusA [Thermosediminibacter oceani DSM 16646] Length = 351 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 146/349 (41%), Positives = 239/349 (68%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ D + EK I ++++L + ++ A + YGT ++++ I+ ETG++ ++ Sbjct: 2 NIEFIEALDQIEKEKGISKEILLEAIEAALVSAYKKNYGTSQNVKINIDRETGEVKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E+V++ +ISL A+ +P + IG ++S + P FGR+A Q+AKQV++Q+++EA Sbjct: 62 KTVKEDVKDPLLEISLLDAKKINPLVKIGDIISVEVTPKKFGRIAAQTAKQVVMQRIKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF + ++++G V+R + NVI+DLG ++ ++ +E I E PG+R+K Y Sbjct: 122 ERNIIYEEFAGRETDLVTGVVQRFDKKNVIIDLGKTEVILPPNEQIPNETYTPGERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +++SR+HP + +LF +EVPEIY GIV++K+++R+ GSR K+AV+S D Sbjct: 182 ILEVKKTTKGPVIIVSRSHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKVAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G+RVQAVV EL+ EKIDI+ WS + ++ NAL PA V V ++ED Sbjct: 242 ENVDPVGACVGPKGTRVQAVVEELKGEKIDIIKWSKNVTEYISNALSPAKVISVDVEEDS 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+V +QLSLAIG+ GQN RLA++LTGW IDI + + DS + + Sbjct: 302 KIARVLVSDQQLSLAIGKEGQNARLAAKLTGWKIDIKSSKTDSRGDENE 350 >gi|308272453|emb|CBX29057.1| Transcription elongation protein nusA [uncultured Desulfobacterium sp.] Length = 432 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 179/429 (41%), Positives = 275/429 (64%), Gaps = 5/429 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ ++ D V+ ++ ID++V++ + ++++ AAR YG DI ++ N E+GDI F+ + Sbjct: 5 EIKRVVDQVSRDRGIDKNVLIKAIEEALKSAARKKYGNKIDIEIQYNEESGDIEAFQFKK 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + QISL+ + DP +IG + + FGR+A QSAKQVIIQK+++AER Sbjct: 65 VVETVTDSMTQISLEEGQTLDPECEIGDSLGTKMDTTAFGRIAAQSAKQVIIQKMKDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y F ++ GEII+G V+R+E+ ++IV+LG ++G++ +E IS+E + GDR+++ + Sbjct: 125 NAVYSSFIERKGEIINGIVQRIEHSGDIIVNLGQTEGILPINEQISKETYKRGDRIRALL 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V ++ RGPQ++LSRTH F+ LF EVPEI GIV++ R+PG RAK+AV S+DS Sbjct: 185 LEVLQDSRGPQIVLSRTHSNFLANLFKTEVPEISEGIVKIMGAVREPGVRAKIAVSSNDS 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 I PVGACVGM+GSRVQ VV ELR EKIDI+ W DSA +V NAL PA + +V++DED Sbjct: 245 DIHPVGACVGMKGSRVQNVVQELRGEKIDIIPWHVDSAKYVCNALAPAEIIRVIIDEDNH 304 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EVIVP E LS+AIG+RGQNVRLAS+LTGW +D+ +E + + Sbjct: 305 AMEVIVPDESLSIAIGKRGQNVRLASKLTGWNLDVQSESHYNE----VLKNGYDSLVSLP 360 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 V + + L+ +GF V+E++ S++ I+G +E A ++ A E + + + Sbjct: 361 GVGINLVNSLIEKGFTSVDEISNASASDLMQIKGIAKEKAEKLINSATEAISKDEDKVSA 420 Query: 427 KIRELGVSE 435 + + Sbjct: 421 EEENPDIEN 429 >gi|167037624|ref|YP_001665202.1| transcription elongation factor NusA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|307264912|ref|ZP_07546474.1| transcription termination factor NusA [Thermoanaerobacter wiegelii Rt8.B1] gi|320116039|ref|YP_004186198.1| transcription termination factor NusA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389438|ref|ZP_08211005.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|166856458|gb|ABY94866.1| NusA antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|306920170|gb|EFN50382.1| transcription termination factor NusA [Thermoanaerobacter wiegelii Rt8.B1] gi|319929130|gb|ADV79815.1| transcription termination factor NusA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325994443|gb|EGD52868.1| NusA antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 346 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 154/345 (44%), Positives = 227/345 (65%), Gaps = 1/345 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++ Sbjct: 2 NAEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V RV+ NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTRVDKKNVLINLGRVEAILGPSEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + + DE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346 >gi|289578389|ref|YP_003477016.1| transcription termination factor NusA [Thermoanaerobacter italicus Ab9] gi|297544665|ref|YP_003676967.1| transcription termination factor NusA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528102|gb|ADD02454.1| transcription termination factor NusA [Thermoanaerobacter italicus Ab9] gi|296842440|gb|ADH60956.1| transcription termination factor NusA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 346 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 154/345 (44%), Positives = 225/345 (65%), Gaps = 1/345 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++ Sbjct: 2 NTEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+I+G V R + NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLSKETEVITGIVTRADKKNVLINLGRVEAILGPAEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F+INAL PA + + DE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIINALSPARALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346 >gi|254375031|ref|ZP_04990511.1| transcription elongation factor [Francisella novicida GA99-3548] gi|151572749|gb|EDN38403.1| transcription elongation factor [Francisella novicida GA99-3548] Length = 489 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 161/515 (31%), Positives = 296/515 (57%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKLSTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + ++Q ++I+ AR W E Sbjct: 469 ------------VDMDEEQATNLIMQARAP--WFE 489 >gi|118498223|ref|YP_899273.1| transcription elongation factor NusA [Francisella tularensis subsp. novicida U112] gi|194324407|ref|ZP_03058180.1| transcription termination factor NusA [Francisella tularensis subsp. novicida FTE] gi|208780250|ref|ZP_03247592.1| transcription termination factor NusA [Francisella novicida FTG] gi|118424129|gb|ABK90519.1| transcription elongation factor [Francisella novicida U112] gi|194321472|gb|EDX18957.1| transcription termination factor NusA [Francisella tularensis subsp. novicida FTE] gi|208743899|gb|EDZ90201.1| transcription termination factor NusA [Francisella novicida FTG] gi|332678959|gb|AEE88088.1| Transcription termination protein NusA [Francisella cf. novicida Fx1] Length = 489 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 161/515 (31%), Positives = 296/515 (57%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ VA+++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + ++Q ++I+ AR W E Sbjct: 469 ------------VDMDEEQATNLIMQARAP--WFE 489 >gi|134299807|ref|YP_001113303.1| transcription elongation factor NusA [Desulfotomaculum reducens MI-1] gi|134052507|gb|ABO50478.1| NusA antitermination factor [Desulfotomaculum reducens MI-1] Length = 384 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 159/370 (42%), Positives = 241/370 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L+ + EK I DV+L + ++ A + +G++ + RV I+ +TGD ++ Sbjct: 2 NSEFLEALRDLEKEKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRDTGDYKVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ AR DP ++ VV D + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RAVVEEVEDDRVEISLEDARKIDPRFNLEDVVEDEVTPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF ++ G+I++G V+R+E NV ++LG ++ ++ E I E+ R GDR+K+Y Sbjct: 122 ERNIIFEEFSNREGDILTGIVQRIENKNVFIELGKTEAILTPSEQIPNEDYRHGDRLKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SRTHP + +LF +EVPE+ G+V++K+++R+ G R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLFELEVPELQEGVVELKSIAREAGYRSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RVQ +VTEL EKIDI+ W+ D + +V ++L PA V V + ED Sbjct: 242 ENIDPVGACVGPKGMRVQNIVTELNGEKIDIIKWNQDPSKYVASSLSPAKVVAVEVWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + E F Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMTDIYPEYDAEENDGFSTD 361 Query: 366 INVDEIIAHL 375 N E Sbjct: 362 DNYLETFEDE 371 >gi|115372730|ref|ZP_01460036.1| NusA protein [Stigmatella aurantiaca DW4/3-1] gi|310823422|ref|YP_003955780.1| transcription termination factor NusA [Stigmatella aurantiaca DW4/3-1] gi|115370211|gb|EAU69140.1| NusA protein [Stigmatella aurantiaca DW4/3-1] gi|309396494|gb|ADO73953.1| Transcription termination factor NusA [Stigmatella aurantiaca DW4/3-1] Length = 565 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 195/496 (39%), Positives = 286/496 (57%), Gaps = 47/496 (9%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + D VA +K I+R V+++ + D+++ AA+ +G ++ + + E G + LF+ + VVE Sbjct: 13 LVLDQVAKDKGIERSVLIATLEDAMKTAAKKHFGQDRNLEAKYDVEKGVVELFQAITVVE 72 Query: 71 EVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMD---------------------- 105 E+ + QI++ A + ++ G + + D Sbjct: 73 EIVDPVQAVNQITMAEAHKKGMEVEPGDELVFQIMYRDEDAAEAKAQDDQYGDILRLKTF 132 Query: 106 ---FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162 FGR+A Q+AKQVI+Q+ R+AER+ + E+KD+ EI++G +R E GN+IVDLG ++ Sbjct: 133 RRGFGRIAAQTAKQVILQRTRDAERENVFNEYKDRKNEIVTGIARRFERGNIIVDLGRAE 192 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI G Sbjct: 193 AVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEG 252 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 IV ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + D Sbjct: 253 IVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDED 312 Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A+FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI Sbjct: 313 PASFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDIN 372 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 +E R+ V+E++ L A GF +++A ++ I G D Sbjct: 373 SESRVREMREFANRSLGSLP----GVNEMLIETLYAHGFRQAKDVAEASPEVLSQIPGLD 428 Query: 403 EETAVEIQGRAREY------------LEGIDITLQKKIR---ELGVSEELCSIPGIDSKI 447 +Q AR+ E + + R EL SE + + G+ K Sbjct: 429 PTRLPAMQESARKQMVDDAAELSRMDHEREAARIAEARRHPDELSQSERMARVRGLGEKT 488 Query: 448 KVALGENGIKTMEDLA 463 AL +G KT+ED+A Sbjct: 489 IEALIVSGYKTVEDIA 504 >gi|328953957|ref|YP_004371291.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454281|gb|AEB10110.1| NusA antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 442 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 182/419 (43%), Positives = 282/419 (67%), Gaps = 5/419 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLL 66 +L ++ + V+ +K ID+D++L+ + ++++ AA+ YG D I V + +TG+I +F+ Sbjct: 4 DLRRLIEQVSRDKGIDKDLLLNTVMEAVRSAAKKRYGAKQDNIEVGFSEDTGEIEVFQFK 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVV+EV + QI+L AR DP D+G + L FGR+A QSAKQVIIQ +R+AE Sbjct: 64 EVVDEVIDSDRQITLPEARQLDPECDLGDSLGIKLDAGSFGRIAAQSAKQVIIQGMRDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + ++KD+ GEII+G V+R + +IV+LG ++ ++ E + RE R GDR+++Y+ Sbjct: 124 RDIVFEDYKDRKGEIINGIVQRQDKSGIIVNLGRTEALLPITEQVPRELYRQGDRIRAYV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV+R+ +GPQ++LSR F++ LF EVPEI GIV++ AV+R+PGSR+K+AV S D+ Sbjct: 184 VDVKRQTKGPQIILSRVDENFLIMLFEAEVPEIQEGIVKIMAVAREPGSRSKIAVASRDA 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ +V ELR EKIDI+ W+PD A FV AL PA V+++++DED Sbjct: 244 DVDPVGACVGMKGSRVQNIVQELRGEKIDIIPWNPDPAKFVTQALAPAEVSRIIIDEDSQ 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +E+IVP +QL LAIG+RGQNVRLA++LTGW ID+ +E + S + ++ + + Sbjct: 304 NMEIIVPDDQLFLAIGKRGQNVRLAAKLTGWKIDVKSESKYSKSMKEGYLSLLKIP---- 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 V E+ A L GF +E+A ++E+ + G +E+ A +I G A+ ++ + + Sbjct: 360 GVGEMTASALYEAGFTSAKEVAEANLAELMQVPGINEKKATQILGAAQTLMKASEDNPE 418 >gi|116748667|ref|YP_845354.1| transcription elongation factor NusA [Syntrophobacter fumaroxidans MPOB] gi|116697731|gb|ABK16919.1| NusA antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 449 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 179/429 (41%), Positives = 264/429 (61%), Gaps = 4/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D V+ EK IDR ++ + ++I+ A + YGT D+ V N E G++ F+ E Sbjct: 4 ELKRLIDQVSREKGIDRQTLIHTLEEAIKSAIKKKYGTRQDLDVTYNEEYGELEAFQFKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A DP +IG + + GR+A QSAKQVIIQK+++AER Sbjct: 64 VVETVTDPDKQVSLAEAIKLDPESEIGDELGIRMDTETLGRIAAQSAKQVIIQKMKDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFK + GEI G V+RV+ ++V++G ++ ++ E I RE R GDRV++Y+ Sbjct: 124 EVVYEEFKSRKGEIAHGVVQRVDKSGIVVNMGQAEAILPPKEQIPREVFRQGDRVRAYVL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++ +GPQ++LSRTHP F+++LFH EVPEI GIV + + +R+PGSRAK+AV S + Sbjct: 184 DVKKISKGPQIVLSRTHPHFLIQLFHGEVPEIVEGIVSIISAAREPGSRAKIAVISKATD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQ VV ELR EKIDIV W+ D A FV+NAL PAI++KV++D+ Sbjct: 244 VDPVGACVGMKGTRVQNVVQELRGEKIDIVPWNMDPAKFVVNALAPAIISKVIIDQANRS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EVIVP +QLSLAIG++GQNVRLAS+LT W ID+ E ++ Q ++ Sbjct: 304 MEVIVPDDQLSLAIGKKGQNVRLASRLTNWRIDVKNESR----HERQKQTGYQSMLRING 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 + +A L G ++E SE+ + E++ A + + T + Sbjct: 360 LTAQLADRLYEAGITSLQEFIDASGSELEELTQLAGPVIEEMKAEAGRLVLENETTAEAA 419 Query: 428 IRELGVSEE 436 ++ Sbjct: 420 SEGNETQQD 428 >gi|147677601|ref|YP_001211816.1| transcription elongation factor NusA [Pelotomaculum thermopropionicum SI] gi|146273698|dbj|BAF59447.1| transcription elongation factor [Pelotomaculum thermopropionicum SI] Length = 360 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 155/359 (43%), Positives = 236/359 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L+ + EK I DV+L + ++ A + +G++ + RV I+ ETG+ ++ Sbjct: 2 NTEFLEALKDLEREKGIAVDVLLEAIEAALLSAYKRNFGSLQNARVHIDRETGEFKVYTQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E VE+ +I +K AR +P+ G +V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 RTVSEHVEDPRQEIDIKEARAINPNYAPGDIVESEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF ++ G+I++G V+RVE NV ++LG ++ ++ E I E R GDR+K+Y Sbjct: 122 ERNIIYEEFANREGDIVTGIVQRVEQKNVYIELGKTEAILAPSEQIPGEEYRQGDRIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+ +GPQ+L+SRTHP + +L MEVPE+ GIV++K ++R+ G+R+K+AV+S D Sbjct: 182 IVEVRKTTKGPQILVSRTHPGLLKRLLEMEVPELQEGIVELKGIAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQ +V+EL EKIDI+ W+PD + FV ++L PA V V + E+ Sbjct: 242 ENVDPVGACVGPKGMRVQNIVSELNGEKIDIIKWNPDPSKFVASSLSPAKVIAVEIWEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + +++NE + Sbjct: 302 KVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQMREIYPEEYNELFSDEYE 360 >gi|167040285|ref|YP_001663270.1| transcription elongation factor NusA [Thermoanaerobacter sp. X514] gi|300914369|ref|ZP_07131685.1| transcription termination factor NusA [Thermoanaerobacter sp. X561] gi|307724395|ref|YP_003904146.1| transcription termination factor NusA [Thermoanaerobacter sp. X513] gi|166854525|gb|ABY92934.1| NusA antitermination factor [Thermoanaerobacter sp. X514] gi|300889304|gb|EFK84450.1| transcription termination factor NusA [Thermoanaerobacter sp. X561] gi|307581456|gb|ADN54855.1| transcription termination factor NusA [Thermoanaerobacter sp. X513] Length = 346 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 153/345 (44%), Positives = 227/345 (65%), Gaps = 1/345 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YGT ++++ ++ ETGD+ ++ Sbjct: 2 NAEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGTSQNVKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQNAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLAKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + + DE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 346 >gi|297569836|ref|YP_003691180.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus AHT2] gi|296925751|gb|ADH86561.1| transcription termination factor NusA [Desulfurivibrio alkaliphilus AHT2] Length = 449 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 187/407 (45%), Positives = 270/407 (66%), Gaps = 5/407 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D ++ +K I+RD+++ + +++ AA+ YG +I N E G+I LF+ Sbjct: 4 ELKRIIDQISRDKGINRDLLIEAIEEAVMSAAKKKYGHRREIEARYNDEYGEIELFQFRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +ISL A++ DP +++G + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVTDEQTEISLAEAKELDPEVEMGDELGSKMDSAADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D Y FK++ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVYDLFKERKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F+ KLF MEVPEI GIV+V V+R+PGSRAK+AV S++S Sbjct: 184 LDVRQSSKEPQLVLSRTCNEFLTKLFTMEVPEIAEGIVKVMGVAREPGSRAKIAVSSTES 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A +V NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARYVSNALAPAQVSMVVVDEENN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L GW ID+ +E S + ++ F Q + Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLGWRIDVKSETRYSRSIEEGF----QSLLDVA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + E A L G + ELA +E+A+ G +E A + A Sbjct: 360 GISEKQAEKLYDGGISSAAELAAADPAEVATTLGLEEPEAQALVSAA 406 >gi|94272101|ref|ZP_01292067.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] gi|93450237|gb|EAT01518.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] Length = 476 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 185/410 (45%), Positives = 270/410 (65%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+ Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EVE+ QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVEDEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++ Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E + + + Q ++ Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSESRYARFIE----DGFQSLLELA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD--EETAVEIQGRAR 414 + E A LL G+ V ELA E+ I+GFD EE + AR Sbjct: 360 GMTEKRAELLAENGYGSVTELAAASAEELQEIDGFDLGEEDTEALLVVAR 409 Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 15/72 (20%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L + G+ K L ENG ++ +LA S ++L Sbjct: 353 QSLLELAGMTEKRAELLAENGYGSVTELAAASAEELQEID---------------GFDLG 397 Query: 495 KDQVESMIIHAR 506 ++ E++++ AR Sbjct: 398 EEDTEALLVVAR 409 >gi|256750788|ref|ZP_05491673.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|256750371|gb|EEU63390.1| NusA antitermination factor [Thermoanaerobacter ethanolicus CCSD1] Length = 346 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 151/345 (43%), Positives = 226/345 (65%), Gaps = 1/345 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ +++ EK I +D + + ++ A + YG+ + ++ ++ ETGD+ ++ Sbjct: 2 NTEFIEALNSICEEKGIPKDTMFEAIEAALVSAYKKNYGSSQNAKIVMDRETGDVKVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N +ISL+ AR + IG +V + P +FGR+A Q+AKQV+IQ++R+A Sbjct: 62 KTVVEEVYNDLLEISLEEARKINKKYQIGDIVDIEVTPKNFGRIAAQTAKQVVIQRIRKA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF K E+++G V +V+ NV+++LG + ++ E I E PGDRVK Y Sbjct: 122 ERNVIYEEFLSKETEVVTGIVTKVDKKNVLINLGRVEAILSPAEQIPGETFAPGDRVKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SR+HP + +LF +E PEI GIV++++++R+ GSR K+AVFS D Sbjct: 182 IVEVKKTTKGPQILISRSHPGLVKRLFELESPEIQQGIVEIRSIAREAGSRTKMAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 ++DPVGACVG +G+RVQAVV EL+ EKIDIV WS F++NAL PA + + DE Sbjct: 242 ENVDPVGACVGYKGARVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKALSIEILDEK 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 302 EKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIKSESMVKS 346 >gi|304437178|ref|ZP_07397139.1| transcription termination factor NusA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369840|gb|EFM23504.1| transcription termination factor NusA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 379 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 158/363 (43%), Positives = 232/363 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F + Sbjct: 16 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFAIKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVE+ +I L AR +P +G VV + P +FGR+A Q+AKQV++Q++REAER Sbjct: 76 VVDEVESDVTEIGLAQARAINPDYVVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ EI++G V+RVE NV VD+G ++ V+ E + E GD V++YI Sbjct: 136 GIVYEEYMNRSSEIVTGIVQRVEGHNVFVDIGRAEAVLMATEQLPNETYNYGDTVRAYII 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS+ Sbjct: 196 EVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSSEER 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 256 VDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEAEKI 315 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D Sbjct: 316 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQARETEQADGAPTDAPSEDQAT 375 Query: 368 VDE 370 +E Sbjct: 376 PEE 378 >gi|238927232|ref|ZP_04658992.1| transcription elongation factor NusA [Selenomonas flueggei ATCC 43531] gi|238884907|gb|EEQ48545.1| transcription elongation factor NusA [Selenomonas flueggei ATCC 43531] Length = 379 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 159/366 (43%), Positives = 233/366 (63%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N E LQ +AYEK ID +++ + ++ A R +G ++R+ ++ ETG +F Sbjct: 13 NGKEFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGAAQNVRISLSRETGAFHVFA 72 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV+EVE+ +ISL AR +P +G VV + P +FGR+A Q+AKQV++Q++RE Sbjct: 73 IKTVVDEVESDVTEISLARARAINPDYTVGDVVEIEMTPANFGRIAAQTAKQVVMQRLRE 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y E+ ++ EI++G V+R+E NV VD+G ++ V+ E + E GD V++ Sbjct: 133 AERGIVYEEYMNRSSEIVTGIVQRIEGHNVFVDIGRAEAVLMATEQLPTETYNYGDTVRA 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V+R RGPQ++LSRTHP + KLF ++VPEI G+V++++++R+ GSR+K+AV+SS Sbjct: 193 YIIEVKRTSRGPQIMLSRTHPGLLKKLFELQVPEIQEGVVEIRSIAREAGSRSKVAVWSS 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 253 EERVDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSDDPATYIANSLNPAKVISVAVNEA 312 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Q D Sbjct: 313 EKISRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAREEEQADGATTDAPSED 372 Query: 365 AINVDE 370 E Sbjct: 373 QAAAGE 378 >gi|94263057|ref|ZP_01286876.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] gi|93456600|gb|EAT06708.1| Transcription termination factor NusA [delta proteobacterium MLMS-1] Length = 472 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 184/410 (44%), Positives = 269/410 (65%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL +I D + +K IDR++++ + +++ AA+ YG ++ N E G++ LF+ Sbjct: 4 ELKRIIDQICRDKGIDRELLIEAIEEAVMSAAKKRYGMRREVEARFNDELGEVELFQFRA 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VV+EV + QIS A+ DP +++G + + + D GR+A QSAKQVIIQK++EAE Sbjct: 64 VVDEVADEQTQISYADAKALDPEVEMGDELGSKMESVADLGRIAAQSAKQVIIQKMKEAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 D + FKD+ G+I++G V+R E GN+IV+LG +D ++ E + R++ R GDR+++Y+ Sbjct: 124 SDVVFDMFKDRKGDIVNGIVQRFERGNMIVNLGRTDAILPSREQMPRKSYRQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+ + PQ++LSRT +F++KLF +EVPE+ GIV + V+R+PGSRAK+AV S+++ Sbjct: 184 LDVRQSSKDPQLILSRTCNEFLIKLFALEVPEVAEGIVNILGVAREPGSRAKIAVSSTET 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ EKIDIV WSPD A FV NAL PA V+ VV+DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGEKIDIVPWSPDPARFVSNALSPAQVSLVVVDEESK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS L W ID+ +E + + + Q ++ Sbjct: 304 TLLVVVPDDQLSLAIGRQGQNVRLASALLDWRIDVKSESRYARFIE----DGFQSLLELA 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD--EETAVEIQGRAR 414 + E A LL G+ V ELA E+ I+GFD EE + AR Sbjct: 360 GMTEKRAELLAENGYGSVTELAAASAEELQEIDGFDLGEEDTEALLVVAR 409 Score = 38.8 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 15/72 (20%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L + G+ K L ENG ++ +LA S ++L Sbjct: 353 QSLLELAGMTEKRAELLAENGYGSVTELAAASAEELQEID---------------GFDLG 397 Query: 495 KDQVESMIIHAR 506 ++ E++++ AR Sbjct: 398 EEDTEALLVVAR 409 >gi|158523046|ref|YP_001530916.1| transcription elongation factor NusA [Desulfococcus oleovorans Hxd3] gi|158511872|gb|ABW68839.1| NusA antitermination factor [Desulfococcus oleovorans Hxd3] Length = 475 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 184/432 (42%), Positives = 273/432 (63%), Gaps = 6/432 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + V+ +K IDRD ++ + ++I+ AAR YG DI + +TG+I +F+ Sbjct: 4 QDVKRVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFK 63 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVE V++ QI+ R DP ++G + + FGR+A QSAKQVIIQK+REAE Sbjct: 64 EVVETVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F +K GEII+G V R+E GNVIV++G ++ ++ E I E R GDRV++ + Sbjct: 124 RSAVYKNFVEKEGEIINGIVSRMERGNVIVNIGEAEAILNSREQIPGEGYRRGDRVRANV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V E GPQ++LSR HP F+V LF EVPEI GI+ +KA++R+ G R K+AV S+D Sbjct: 184 MKVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSNDM 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVG+RG+R+Q VV EL+ EKIDIV W+PD A FV NAL PA + +V++DED Sbjct: 244 DIDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDNA 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +E+IVP E SLAIGRRGQNVRLAS+LTGW +D+ +E + ++ ++ Q Sbjct: 304 AMEIIVPDESHSLAIGRRGQNVRLASKLTGWHLDVQSESIYTQAMERGYDTLLQIP---- 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE--GIDITL 424 VD +A+ L GF ++++ + ++ +EG DE +A + A + E + + Sbjct: 360 GVDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKALIRDAVKVAEQAAREQAI 419 Query: 425 QKKIRELGVSEE 436 ++K + ++E Sbjct: 420 REKAAKEQAAKE 431 >gi|58584795|ref|YP_198368.1| transcription elongation factor NusA [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419111|gb|AAW71126.1| Transcription elongation factor, NusA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 520 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 191/510 (37%), Positives = 317/510 (62%), Gaps = 17/510 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L++++ A ++ +K +D +V++ + +I+ A YG+ S + V I+ TG++ +R Sbjct: 21 NLDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYRE 80 Query: 66 LEVVEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 L+VV++ N I+L A+ +G ++ L ++ + + A+Q I Q Sbjct: 81 LKVVDDEPNGEEHNGYGSITLTQAKLIKEDAKVGDTIN-ELLSLNTDLASARIAQQRIAQ 139 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + I E R GD Sbjct: 140 VIKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLIGGELFREGD 199 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 ++K+YI V+R G Q++LSR F+ L E+PEI +G+V VK ++RD GSR+K+A Sbjct: 200 KIKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRSKVA 259 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D +IDPVGACVG++G R++A++ EL EKID+V + D FVI A+ PA V+KV+ Sbjct: 260 VFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVSKVI 319 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE +E+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R ++ ++ + Sbjct: 320 IDESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQCSA 379 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E++ RA YL+ Sbjct: 380 LFAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYLKAE 439 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + ++++ LG+ ++ ++P + K+AL E+GIKT+E++A S + + + Sbjct: 440 NDRKIEELKSLGMESDVINLP-LSIDDKIALSEHGIKTLENIADLSSYEFCSILSSSASD 498 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 E K+ V S+I+ AR K+G Sbjct: 499 KENL----------KNTVNSIIMEARKKLG 518 >gi|225677161|ref|ZP_03788159.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590785|gb|EEH12014.1| transcription elongation factor NusA [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 523 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 199/511 (38%), Positives = 323/511 (63%), Gaps = 14/511 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAYQKYGSKSKIVVNIDRNTGKVTSYRKL 81 Query: 67 EVVEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V+++ N I+L A+ IG VS L ++ + + A+Q I Q Sbjct: 82 KVIDDESNREENTEYESITLTQAKLIKEDAKIGDTVS-ELLSLNTDLASARIAQQKIAQI 140 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+ Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTKAYLPLRNLTGGESFREGDK 200 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV Sbjct: 201 VKTYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++ Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ + Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + N Sbjct: 441 DRKIEELKSLGMEDDVINLT-LSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSADNK 499 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + KD V+S+II AR K+G I Sbjct: 500 MNSENL-------KDTVDSIIIEARKKLGLI 523 >gi|187931005|ref|YP_001890989.1| transcription elongation factor NusA [Francisella tularensis subsp. mediasiatica FSC147] gi|187711914|gb|ACD30211.1| transcription termination factor NusA [Francisella tularensis subsp. mediasiatica FSC147] Length = 489 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 160/515 (31%), Positives = 295/515 (57%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + ++Q ++I+ AR W E Sbjct: 469 ------------VDIDEEQATNLIMQARAP--WFE 489 >gi|218288337|ref|ZP_03492636.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|258511413|ref|YP_003184847.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241696|gb|EED08869.1| NusA antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|257478139|gb|ACV58458.1| NusA antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 373 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 162/363 (44%), Positives = 240/363 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ L+ D +A EK ID++V+L + ++ + R + + +++RVE+ +TG++ ++ Sbjct: 2 NVDFLEALDQLAREKGIDKEVLLEAIEAALIASYRRNFHSAANVRVEVKRDTGEVHVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE ++ +ISL ARD +PS IG VV + P DFGR+A Q+AKQV++Q+V+EA Sbjct: 62 KTVVEEPKDTRLEISLDAARDINPSYQIGDVVEIEVTPRDFGRIAAQAAKQVVMQRVKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ E++SG V R+E +DLG+++ ++ + E ++ + L+ G R+K + Sbjct: 122 ERSVIYSKFADREEEVVSGIVSRLEPRVAYIDLGDTEAILPQSEQMASDKLQVGKRLKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V R +GPQ+++SRTHP + +LF +EVPEIY GIV++KAV+R+ GSR+K+AV S + Sbjct: 182 IARVERTSKGPQIVVSRTHPGLLRRLFELEVPEIYEGIVEIKAVAREAGSRSKIAVHSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+GACVG RGSRVQA+V EL EK+DIV WS D ATFV NAL PA V V + ED Sbjct: 242 PEVDPIGACVGARGSRVQAIVNELNGEKVDIVEWSEDPATFVANALSPAKVIDVHIYEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + D E T Sbjct: 302 RVARTVVPDYQLSLAIGKEGQNARLAARLTGWKIDIKSESQMASHSLLDQLEDTNEEEPE 361 Query: 366 INV 368 Sbjct: 362 FAT 364 >gi|15614979|ref|NP_243282.1| transcription elongation factor NusA [Bacillus halodurans C-125] gi|20139215|sp|Q9KA74|NUSA_BACHD RecName: Full=Transcription elongation protein nusA gi|10175036|dbj|BAB06135.1| transcriptional terminator [Bacillus halodurans C-125] Length = 382 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 150/373 (40%), Positives = 229/373 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK I ++V++ + ++ + + ++RV++N E G I +F Sbjct: 2 NSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R + + VDLG + ++ E + E+ R DR+K+Y Sbjct: 122 ERGIIYADFIDREEDIMTGIVQRQDNRFIYVDLGKVEALLPLSEQMPNESYRHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + + Sbjct: 182 ITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHAEN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +GSRVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 242 PEVDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + Sbjct: 302 KTTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAQELGLLEDEAASHETLAL 361 Query: 366 INVDEIIAHLLVA 378 V Sbjct: 362 DQETADQPEATVE 374 >gi|56707228|ref|YP_169124.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis SCHU S4] gi|110669698|ref|YP_666255.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis FSC198] gi|134301263|ref|YP_001121231.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis WY96-3418] gi|224456289|ref|ZP_03664762.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis MA00-2987] gi|254369913|ref|ZP_04985921.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874067|ref|ZP_05246777.1| transcription factor nusA [Francisella tularensis subsp. tularensis MA00-2987] gi|56603720|emb|CAG44682.1| N utilization substance protein A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320031|emb|CAL08065.1| N utilization substance protein A [Francisella tularensis subsp. tularensis FSC198] gi|134049040|gb|ABO46111.1| transcription factor NusA [Francisella tularensis subsp. tularensis WY96-3418] gi|151568159|gb|EDN33813.1| hypothetical protein FTBG_01505 [Francisella tularensis subsp. tularensis FSC033] gi|254840066|gb|EET18502.1| transcription factor nusA [Francisella tularensis subsp. tularensis MA00-2987] gi|282158336|gb|ADA77727.1| transcription elongation factor NusA [Francisella tularensis subsp. tularensis NE061598] Length = 489 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 161/515 (31%), Positives = 295/515 (57%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + + ++LSR+ + LF +EVPE+ ++ + V R+PG R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ I+++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSIDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + ++Q ++I+ AR W E Sbjct: 469 ------------VDIDEEQATNLIMQARAP--WFE 489 >gi|228966761|ref|ZP_04127805.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar sotto str. T04001] gi|228792860|gb|EEM40418.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar sotto str. T04001] Length = 368 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 150/365 (41%), Positives = 224/365 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDEII 372 DEI Sbjct: 364 EDEIQ 368 >gi|253573564|ref|ZP_04850907.1| transcription termination factor NusA [Paenibacillus sp. oral taxon 786 str. D14] gi|251847092|gb|EES75097.1| transcription termination factor NusA [Paenibacillus sp. oral taxon 786 str. D14] Length = 365 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 146/363 (40%), Positives = 237/363 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +D++ + ++ + + + T ++RV++N TG+I ++ Sbjct: 3 MDFIEALNELEREKGISKDILFEAIEAALISSYKRNFNTAQNVRVDMNRHTGEIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV + +ISL+ AR+ +P+ + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LVVEEVLDPRTEISLQAAREINPNYHLDDITEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F +K +I++G V+R + N+ VDLG + + +E + E + GDR+K+YI Sbjct: 123 RGLIYNAFVEKEEDIVTGIVQRQDLRNIYVDLGKVEAHLPLNELMPNEKFKHGDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ+LLSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S +S Sbjct: 183 TKVENTTKGPQILLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRNS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E Sbjct: 243 EVDPVGSCVGPKGTRVQTIVNELRGEKIDIVRYSENVEEYVANALSPSKVLEVQVFEAEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + ++ ++ + +I Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEEFGREKTDQGEMPQDSI 362 Query: 367 NVD 369 +VD Sbjct: 363 SVD 365 >gi|319649523|ref|ZP_08003679.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2] gi|317398685|gb|EFV79367.1| transcription elongation factor NusA [Bacillus sp. 2_A_57_CT2] Length = 385 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 152/364 (41%), Positives = 229/364 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I RDV++ + ++ A R + ++R+++N G + +F E Sbjct: 4 ELLDALTLLEKEKGISRDVIIEAIEAALVSAYRRNFNQAQNVRIDLNLGNGTMRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVFDPRLEISVEDAQKINPNYQVEDVVEMEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I Sbjct: 124 GIIYSEFIDREEDIMTGIVQRTDPKFIYVSLGKIEAILPANEQMPNERYQPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVAREAGDRSKISVHSDNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WS D FV NAL P+ V V+++ED Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSSDPVVFVANALSPSKVLDVIVNEDDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + +E F Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPRDETLLNFDNDGY 363 Query: 368 VDEI 371 +E Sbjct: 364 ENED 367 >gi|317129165|ref|YP_004095447.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315474113|gb|ADU30716.1| NusA antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 374 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 151/365 (41%), Positives = 234/365 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + +K ID++++L + ++ + + + ++RV+I+ TG I +F Sbjct: 2 NSEFMDALTTIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRNTGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A++ P D+ VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KEVVEEVFDSRLEISLEAAKNIHPQYDVDDVVEIEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+Y Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPVSEQMPNETYKHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + D Sbjct: 182 ITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAED 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V +V ++E+ Sbjct: 242 PEVDPVGSCVGPKGQRVQTIVNELKGEKIDIVRWSEDPKVYVANALSPSNVVQVTVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG++GQN RLA++LTGW IDI ++ E + N T+ Sbjct: 302 KMTQVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSQSEAEELGLYNSNTDTEQDWTD 361 Query: 366 INVDE 370 +V+E Sbjct: 362 EDVEE 366 >gi|259046783|ref|ZP_05737184.1| N utilization substance protein A [Granulicatella adiacens ATCC 49175] gi|259036551|gb|EEW37806.1| N utilization substance protein A [Granulicatella adiacens ATCC 49175] Length = 366 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 139/343 (40%), Positives = 216/343 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I +DVV++ + ++ A + YG ++ VE + + G++ ++ + E Sbjct: 4 EMLRALTVLEEEKGISKDVVITALEAALVSAYKKNYGQAQNVEVEFDQKKGNMHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T ++SL+ A ++ + ++G + + P DFGR+A Q+AKQVI+Q++R+AER Sbjct: 64 VVEYVFDSTLEVSLEEAHEKHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF EI++G V R ++ V V+LG + + + I E P R+K + Sbjct: 124 TNIYNEFIQYENEIMTGVVDRQDFRYVYVNLGRIVAGMAKQDQIPTEEYLPDQRIKVLVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SRTHP + +LF EVPEIY+G+V++ +++R+ G RAK+AV ++D++ Sbjct: 184 KVDNTTKGPQIFVSRTHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRTNDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG RG RV +V EL E +DIV W+ D A ++ NAL PA V KV + D Sbjct: 244 LDPVGTCVGPRGQRVHNIVEELNGENMDIVEWNEDPAIYIKNALNPAQVLKVEFNSDNNG 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 CIVVVPDHQLSLAIGKRGQNARLAAKLTGYRIDIKSETAYEEY 346 >gi|206972659|ref|ZP_03233600.1| N utilization substance protein A [Bacillus cereus AH1134] gi|218235265|ref|YP_002368617.1| transcription elongation factor NusA [Bacillus cereus B4264] gi|228922570|ref|ZP_04085870.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954092|ref|ZP_04116121.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960032|ref|ZP_04121696.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047502|ref|ZP_04193092.1| Transcription elongation protein nusA [Bacillus cereus AH676] gi|229071314|ref|ZP_04204537.1| Transcription elongation protein nusA [Bacillus cereus F65185] gi|229081071|ref|ZP_04213581.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2] gi|229111287|ref|ZP_04240840.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15] gi|229146387|ref|ZP_04274758.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24] gi|229152015|ref|ZP_04280210.1| Transcription elongation protein nusA [Bacillus cereus m1550] gi|229180092|ref|ZP_04307436.1| Transcription elongation protein nusA [Bacillus cereus 172560W] gi|296504311|ref|YP_003666011.1| transcription elongation factor NusA [Bacillus thuringiensis BMB171] gi|206732416|gb|EDZ49597.1| N utilization substance protein A [Bacillus cereus AH1134] gi|218163222|gb|ACK63214.1| N utilization substance protein A [Bacillus cereus B4264] gi|228603301|gb|EEK60778.1| Transcription elongation protein nusA [Bacillus cereus 172560W] gi|228631364|gb|EEK87998.1| Transcription elongation protein nusA [Bacillus cereus m1550] gi|228637020|gb|EEK93479.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST24] gi|228672063|gb|EEL27354.1| Transcription elongation protein nusA [Bacillus cereus Rock1-15] gi|228702115|gb|EEL54591.1| Transcription elongation protein nusA [Bacillus cereus Rock4-2] gi|228711768|gb|EEL63720.1| Transcription elongation protein nusA [Bacillus cereus F65185] gi|228723749|gb|EEL75104.1| Transcription elongation protein nusA [Bacillus cereus AH676] gi|228799548|gb|EEM46501.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805658|gb|EEM52248.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836999|gb|EEM82340.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325363|gb|ADH08291.1| transcription elongation factor NusA [Bacillus thuringiensis BMB171] Length = 368 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 147/363 (40%), Positives = 225/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|229191985|ref|ZP_04318955.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876] gi|228591536|gb|EEK49385.1| Transcription elongation protein nusA [Bacillus cereus ATCC 10876] Length = 368 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 148/363 (40%), Positives = 226/363 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + +R F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDRVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|323141193|ref|ZP_08076094.1| transcription termination factor NusA [Phascolarctobacterium sp. YIT 12067] gi|322414336|gb|EFY05154.1| transcription termination factor NusA [Phascolarctobacterium sp. YIT 12067] Length = 357 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 145/341 (42%), Positives = 231/341 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + + EK ID +++ + D++ A + GT ++RVE+N ETG+I ++ Sbjct: 2 NADFISAIQELGKEKGIDPELLFQAVDDALVAAYKKNTGTNQNVRVEMNKETGEIHVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE + +++L+ A+ +P G +V + P +FGR+A Q+AKQ ++Q++REA Sbjct: 62 RTVVEGEADGINEMTLEDAQAINPQYLAGDIVEVEVTPKNFGRIAAQNAKQFVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + Y F+ + +I++G ++R+E NV +DLG + V+ +E I E + +R+K+Y Sbjct: 122 ERGQVYERFQSRANDIVTGIIERMENQNVYIDLGKVEAVLTPNEQIPGEIYQYHERMKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+R +GPQ+++SRTHP + +LF +EVPEI++G+V++K+V+R+PG R+K++V+++D Sbjct: 182 IVEVKRTNKGPQIMVSRTHPGLLKRLFELEVPEIHDGVVEIKSVAREPGMRSKISVYTAD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG +G RVQ +V ELR EKIDIV +S D A +V NAL PA V K ++E Sbjct: 242 SNVDPVGACVGHKGMRVQTIVNELRGEKIDIVKYSEDPAQYVANALSPAKVVKTNVNEAD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 KICRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQ 342 >gi|220931626|ref|YP_002508534.1| NusA antitermination factor [Halothermothrix orenii H 168] gi|219992936|gb|ACL69539.1| NusA antitermination factor [Halothermothrix orenii H 168] Length = 377 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 155/371 (41%), Positives = 240/371 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E L D + EK I ++V++ + ++ A + +G+ ++RV I P++G++ ++ Sbjct: 2 NIEFLHALDDIEKEKGISKEVLIEAIETALLSAYKKEFGSKENVRVHIVPDSGEVHVYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VV+EV N +ISL+ A+ + + + G +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KKVVDEVNNERKEISLEEAQKLNKNYEPGDIVEKEVTPANFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y E+K K GEII+GTV+R NV++DLG ++ ++ E I E G R+K Y Sbjct: 122 ERDVIYEEYKQKEGEIITGTVQRFHNNNVLIDLGRTEALLPPSEQIPGELYEMGRRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V +GP++L+SR+HP + +LF +EVPEI++GIV++KAV+R+ G R+K+AV S D Sbjct: 182 VVEVASTTKGPRILVSRSHPGLLKRLFEVEVPEIFDGIVEIKAVAREAGYRSKMAVSSYD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG +G RVQAVV +L EKIDI+ WS D A V NAL PA V V LDE+ Sbjct: 242 ENVDPVGSCVGPKGMRVQAVVDQLNGEKIDIIEWSEDPAILVANALNPAKVINVSLDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 EV+VP QLSLAIG+ GQN RLA++LTGW +DI +E + + + + Sbjct: 302 KVAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKSESQFEKETGEVEKKIPADDGEK 361 Query: 366 INVDEIIAHLL 376 ++ + L Sbjct: 362 VDEVGVEDDSL 372 >gi|125973509|ref|YP_001037419.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405] gi|256003327|ref|ZP_05428318.1| NusA antitermination factor [Clostridium thermocellum DSM 2360] gi|281417712|ref|ZP_06248732.1| NusA antitermination factor [Clostridium thermocellum JW20] gi|125713734|gb|ABN52226.1| NusA antitermination factor [Clostridium thermocellum ATCC 27405] gi|255992617|gb|EEU02708.1| NusA antitermination factor [Clostridium thermocellum DSM 2360] gi|281409114|gb|EFB39372.1| NusA antitermination factor [Clostridium thermocellum JW20] gi|316940252|gb|ADU74286.1| NusA antitermination factor [Clostridium thermocellum DSM 1313] Length = 404 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 154/391 (39%), Positives = 245/391 (62%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +L+ + + EK ID+D ++ + ++ A + +G+ +++V I+ ETGD ++ L Sbjct: 3 ADLIHALEQLEKEKGIDKDTLIEAIEAALISAYKRSFGSSQNVKVSIDRETGDFKVYALK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V +N +IS++ A+ +P + +V + P FGR+A Q+AKQV++Q++REAE Sbjct: 63 KVTANPQNELLEISIENAKKINPDFEENDIVEIEVTPRKFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF +K GEI++G V+R+E NVI+DLG ++ ++ E I E + DR+K+YI Sbjct: 123 RGIIYNEFSNKEGEIVTGVVQRIERKNVIIDLGKAEAILAPSEQIPGEEYKFNDRIKTYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+L+SRTHP + +LF +EVPEIY GIV++K+++R+PGSR K+AV+S D Sbjct: 183 IEVKKTTKGPQILVSRTHPGIIKRLFELEVPEIYEGIVEIKSIAREPGSRTKIAVYSKDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G+RVQAVV ELR EKIDI+ WS + ++ ++L PA V +V ++E+ Sbjct: 243 NVDPVGACVGQKGTRVQAVVDELRGEKIDIIKWSSNPEEYISSSLSPAKVIRVDINEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +V VP QLSLAIG+ GQN RLA++LTGW IDI +E + ++ + Sbjct: 303 SAKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRAAIEQQLLNFNGSYSTEK 362 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 I L + +E A+ Sbjct: 363 QDTPITPDQLFKTNVEESSNDTVDDNAENAA 393 >gi|311030088|ref|ZP_07708178.1| transcription elongation factor NusA [Bacillus sp. m3-13] Length = 374 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 146/358 (40%), Positives = 227/358 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + EK I +DV++ + ++ A + + ++RV++N ETG + +F + Sbjct: 4 ELFDALTLMEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDMNLETGTMRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ AR DP+ VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVFDSRLEISIQEARQIDPNYQENDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K ++ Sbjct: 124 GVIYSEYIEREEDIMTGIVQRLDSKFIYVSLGKIEALLPVNEQMPNEHYKPHDRIKVFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + Sbjct: 184 KVEKTTKGPQIFVSRSHPGLLKRLFELEVPEIYDGTVEIKSVAREAGDRSKISVHCDNPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V +V ++E+ Sbjct: 244 VDPVGACVGPKGQRVQAIVNELKGEKIDIVRWSKDPVEFVANALSPSKVLEVQVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E ++ + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAEELGIYPSLSLSKNDTEN 361 >gi|169831086|ref|YP_001717068.1| transcription elongation factor NusA [Candidatus Desulforudis audaxviator MP104C] gi|169637930|gb|ACA59436.1| NusA antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 359 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 159/358 (44%), Positives = 240/358 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L + E+SI +V+L + ++ A R +GT + RV+++ TGD ++ Sbjct: 2 NSEFLAALRDLEKERSISVEVLLEAIEAALLSAYRRNFGTSHNARVQVDRHTGDCKVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EVE+ QISL+ AR +P + V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 RTVVQEVEDPQDQISLEEARAINPGYQLEDTVESEITPRNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF + G+I++G V+R+E NV ++LG ++ V+ E I REN RPG R+K+Y Sbjct: 122 ERNMVFEEFASREGDIVTGVVQRIEQRNVYIELGKTEAVLPPAEQIPRENYRPGQRLKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +L+SRTHP + +LF +EVPE++ G+V++KAV+R+ G R+K+AV+S+D Sbjct: 182 IVEVKKTTKGPLILVSRTHPGLLKRLFEIEVPELHQGLVELKAVAREAGIRSKIAVYSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG +G+RVQA+V EL EKID+V WSPDS+ FV ++L PA V V + ED Sbjct: 242 EGIDPVGACVGPKGARVQAIVQELNGEKIDVVKWSPDSSKFVSSSLSPAKVIAVEVWEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ ++ + Sbjct: 302 KIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEIYREYLEQQGYEQV 359 >gi|225181381|ref|ZP_03734825.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225167962|gb|EEG76769.1| NusA antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 396 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 157/364 (43%), Positives = 243/364 (66%), Gaps = 1/364 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L DA+ EK + ++V+ + ++ A + + +++RV++N E+G+I ++ Sbjct: 2 NEEFLAAMDAIEKEKGVKKEVLFEAIEAALVSAYKRNFNAAANVRVQLNRESGEIKVYTR 61 Query: 66 LEVVEEV-ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 LEVVEE + +ISL+ A+ D + G +V + P +FGR+A Q+AKQV+IQ++RE Sbjct: 62 LEVVEEESNDPQLEISLQDAQKIDSRYEPGEIVEKEVTPKNFGRIAAQTAKQVVIQRIRE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER+ + E+ D+ +II+G V+R+E NVI+DLG ++ V+ E + ++ R +RVK+ Sbjct: 122 AEREIVFDEYIDREEDIITGIVQRMEQKNVIMDLGKTEAVLLPTEQMPGDDYRQSERVKA 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V++ +GPQ+ +SRTHP + +LF +EVPEI++G V++K+V+R+ G R+KLAV+S Sbjct: 182 YITEVKKTSKGPQIFVSRTHPGLLKRLFELEVPEIFDGTVEIKSVAREAGYRSKLAVYSK 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG +G+RVQA+VTELR EKIDIV W D FV N+L PA V V L ++ Sbjct: 242 NKDVDPVGACVGPKGARVQAIVTELRGEKIDIVKWDEDPVIFVANSLSPAKVMSVSLHQE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + + ER++ F Sbjct: 302 QKVASVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDITSESQAAERQGLPVEERSELFGN 361 Query: 365 AINV 368 +V Sbjct: 362 DEDV 365 >gi|218898968|ref|YP_002447379.1| N utilization substance protein A [Bacillus cereus G9842] gi|228909640|ref|ZP_04073463.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 200] gi|228940904|ref|ZP_04103463.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973833|ref|ZP_04134409.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980422|ref|ZP_04140732.1| Transcription elongation protein nusA [Bacillus thuringiensis Bt407] gi|218542029|gb|ACK94423.1| N utilization substance protein A [Bacillus cereus G9842] gi|228779242|gb|EEM27499.1| Transcription elongation protein nusA [Bacillus thuringiensis Bt407] gi|228785858|gb|EEM33861.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818740|gb|EEM64806.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849929|gb|EEM94760.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 200] gi|326941582|gb|AEA17478.1| transcription elongation factor NusA [Bacillus thuringiensis serovar chinensis CT-43] Length = 368 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 149/363 (41%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|323489587|ref|ZP_08094814.1| transcription elongation factor NusA [Planococcus donghaensis MPA1U2] gi|323396718|gb|EGA89537.1| transcription elongation factor NusA [Planococcus donghaensis MPA1U2] Length = 375 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 154/368 (41%), Positives = 235/368 (63%), Gaps = 3/368 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + +K I R+V++ + ++ A + + ++RV++N TG + ++ + Sbjct: 4 ELLDAFEVLEKQKGISREVLIEAIEAALVTAYKRNFNQAQNVRVDLNLNTGTMLVYSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ ++G VV + + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDERLQISLEDAKVINPAYELGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF D+ +I++G V+R++ N+ V LG + V+ + E + E+ +P DR+K YI Sbjct: 124 GLIFEEFVDRADDIVNGIVERMDARNLYVGLGKVEAVLPQTEQMPNEHYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV +SRTHP + +LF EVPEIY+GIV++K+++R+ G R+K++VF+ Sbjct: 184 KVERTTRGPQVFVSRTHPGLLRRLFENEVPEIYDGIVEIKSIAREAGDRSKISVFAHRDD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG+CVG +G RVQ +V EL EKIDIV WS + FV NAL P+ V V ++E+ Sbjct: 244 IDPVGSCVGSKGGRVQTIVNELSGEKIDIVEWSEEPVIFVANALSPSKVLDVQVNEEAKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E R+ ++ + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET---DARELGIYPNENSNIELLE 360 Query: 368 VDEIIAHL 375 E + Sbjct: 361 SGEELDDF 368 >gi|296132885|ref|YP_003640132.1| transcription termination factor NusA [Thermincola sp. JR] gi|296031463|gb|ADG82231.1| transcription termination factor NusA [Thermincola potens JR] Length = 535 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 169/398 (42%), Positives = 253/398 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + EK I DV+L + ++ A + +G+ ++RV+I+ ETG+I +F Sbjct: 2 NTEFIEALEELEREKGIAIDVLLEALEAALISAYKRNFGSAQNVRVDIDRETGEIKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ +ISL+ A+ RDP ++ +V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 KTVVEKVEDDRLEISLEEAQKRDPRYELSDIVEIEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ G+I++G V+R + NV VDLG ++ ++ E I+ E R GDR+K+Y Sbjct: 122 ERGIIYEEFSNREGDIVTGIVQRQDPKNVYVDLGKTEAILAPSEQIAGEEYRHGDRIKTY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+L+SRTHP + +LF +EVPEI++G+V++K+V+R+ G+R+K+AV+S D Sbjct: 182 IVEVKKTTKGPQILVSRTHPGLLKRLFELEVPEIHDGVVELKSVAREAGARSKIAVYSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RVQ +V EL+ EKIDIV WSPD A FV NAL PA V V ++E Sbjct: 242 ENVDPVGACVGPKGMRVQTIVNELKGEKIDIVKWSPDPARFVANALSPAKVLDVKVNEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + D + Sbjct: 302 KIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQMAEMADNDDLFEENDDITL 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 N D E + E E G++E Sbjct: 362 DNQDYAGEEYYEDEYNGEYAEGEYDYDQEDGEYLGYEE 399 >gi|241667733|ref|ZP_04755311.1| transcription elongation factor NusA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876277|ref|ZP_05248987.1| transcription elongation factor nusA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842298|gb|EET20712.1| transcription elongation factor nusA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 489 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 164/515 (31%), Positives = 292/515 (56%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ ++ K+G+I+ G VKR Y +++DLGN+ +G++ + + ISRE R GD+++ Sbjct: 124 FEREKTARFYQGKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 S + +V + V+LSR + LF +EVPE+ ++ V V R+PG R+K+ V Sbjct: 184 SCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +E+L ++ G++ ++ L +N I TME+LA SVD+LL Sbjct: 420 SQA------LGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + + Q +I+ AR W E Sbjct: 469 ------------VAIDEKQATDLIMQARAP--WFE 489 >gi|30263819|ref|NP_846196.1| transcription elongation factor NusA [Bacillus anthracis str. Ames] gi|42782904|ref|NP_980151.1| transcription elongation factor NusA [Bacillus cereus ATCC 10987] gi|47529243|ref|YP_020592.1| transcription elongation factor NusA [Bacillus anthracis str. 'Ames Ancestor'] gi|47569093|ref|ZP_00239782.1| transcription termination factor nusA [Bacillus cereus G9241] gi|49186666|ref|YP_029918.1| transcription elongation factor NusA [Bacillus anthracis str. Sterne] gi|49479412|ref|YP_037877.1| transcription elongation factor NusA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141674|ref|YP_085157.1| transcription elongation factor NusA [Bacillus cereus E33L] gi|65321143|ref|ZP_00394102.1| COG0195: Transcription elongation factor [Bacillus anthracis str. A2012] gi|118479036|ref|YP_896187.1| transcription elongation factor NusA [Bacillus thuringiensis str. Al Hakam] gi|165872619|ref|ZP_02217250.1| N utilization substance protein A [Bacillus anthracis str. A0488] gi|167639787|ref|ZP_02398056.1| N utilization substance protein A [Bacillus anthracis str. A0193] gi|170706870|ref|ZP_02897328.1| N utilization substance protein A [Bacillus anthracis str. A0389] gi|177652046|ref|ZP_02934592.1| N utilization substance protein A [Bacillus anthracis str. A0174] gi|190568469|ref|ZP_03021376.1| N utilization substance protein A [Bacillus anthracis Tsiankovskii-I] gi|196042176|ref|ZP_03109459.1| N utilization substance protein A [Bacillus cereus NVH0597-99] gi|196044653|ref|ZP_03111888.1| N utilization substance protein A [Bacillus cereus 03BB108] gi|206978435|ref|ZP_03239302.1| N utilization substance protein A [Bacillus cereus H3081.97] gi|217961236|ref|YP_002339804.1| transcription elongation factor NusA [Bacillus cereus AH187] gi|218904944|ref|YP_002452778.1| N utilization substance protein A [Bacillus cereus AH820] gi|222097260|ref|YP_002531317.1| transcription elongation factor nusa [Bacillus cereus Q1] gi|225865795|ref|YP_002751173.1| N utilization substance protein A [Bacillus cereus 03BB102] gi|227813276|ref|YP_002813285.1| N utilization substance protein A [Bacillus anthracis str. CDC 684] gi|228916453|ref|ZP_04080019.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928864|ref|ZP_04091896.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947535|ref|ZP_04109825.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986959|ref|ZP_04147085.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092856|ref|ZP_04223990.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42] gi|229123329|ref|ZP_04252533.1| Transcription elongation protein nusA [Bacillus cereus 95/8201] gi|229140457|ref|ZP_04269012.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26] gi|229186053|ref|ZP_04313223.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1] gi|229197926|ref|ZP_04324642.1| Transcription elongation protein nusA [Bacillus cereus m1293] gi|229602496|ref|YP_002868054.1| N utilization substance protein A [Bacillus anthracis str. A0248] gi|254721998|ref|ZP_05183787.1| transcription elongation factor NusA [Bacillus anthracis str. A1055] gi|254735854|ref|ZP_05193560.1| transcription elongation factor NusA [Bacillus anthracis str. Western North America USA6153] gi|254756007|ref|ZP_05208038.1| transcription elongation factor NusA [Bacillus anthracis str. Vollum] gi|254759332|ref|ZP_05211357.1| transcription elongation factor NusA [Bacillus anthracis str. Australia 94] gi|301055306|ref|YP_003793517.1| transcription elongation factor NusA [Bacillus anthracis CI] gi|30258463|gb|AAP27682.1| N utilization substance protein A [Bacillus anthracis str. Ames] gi|42738831|gb|AAS42759.1| N utilization substance protein A [Bacillus cereus ATCC 10987] gi|47504391|gb|AAT33067.1| N utilization substance protein A [Bacillus anthracis str. 'Ames Ancestor'] gi|47554255|gb|EAL12617.1| transcription termination factor nusA [Bacillus cereus G9241] gi|49180593|gb|AAT55969.1| N utilization substance protein A [Bacillus anthracis str. Sterne] gi|49330968|gb|AAT61614.1| N utilization substance protein A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975143|gb|AAU16693.1| N utilization substance protein A [Bacillus cereus E33L] gi|118418261|gb|ABK86680.1| N utilization substance protein A [Bacillus thuringiensis str. Al Hakam] gi|164711651|gb|EDR17197.1| N utilization substance protein A [Bacillus anthracis str. A0488] gi|167512188|gb|EDR87565.1| N utilization substance protein A [Bacillus anthracis str. A0193] gi|170128288|gb|EDS97157.1| N utilization substance protein A [Bacillus anthracis str. A0389] gi|172082415|gb|EDT67480.1| N utilization substance protein A [Bacillus anthracis str. A0174] gi|190560473|gb|EDV14451.1| N utilization substance protein A [Bacillus anthracis Tsiankovskii-I] gi|196024688|gb|EDX63360.1| N utilization substance protein A [Bacillus cereus 03BB108] gi|196027028|gb|EDX65652.1| N utilization substance protein A [Bacillus cereus NVH0597-99] gi|206743350|gb|EDZ54790.1| N utilization substance protein A [Bacillus cereus H3081.97] gi|217063696|gb|ACJ77946.1| N utilization substance protein A [Bacillus cereus AH187] gi|218538022|gb|ACK90420.1| N utilization substance protein A [Bacillus cereus AH820] gi|221241318|gb|ACM14028.1| N utilization substance protein A [Bacillus cereus Q1] gi|225790987|gb|ACO31204.1| N utilization substance protein A [Bacillus cereus 03BB102] gi|227004195|gb|ACP13938.1| N utilization substance protein A [Bacillus anthracis str. CDC 684] gi|228585644|gb|EEK43746.1| Transcription elongation protein nusA [Bacillus cereus m1293] gi|228597472|gb|EEK55122.1| Transcription elongation protein nusA [Bacillus cereus BGSC 6E1] gi|228643018|gb|EEK99294.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST26] gi|228660105|gb|EEL15741.1| Transcription elongation protein nusA [Bacillus cereus 95/8201] gi|228690478|gb|EEL44261.1| Transcription elongation protein nusA [Bacillus cereus Rock3-42] gi|228772737|gb|EEM21177.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812055|gb|EEM58386.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830671|gb|EEM76276.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843032|gb|EEM88114.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266904|gb|ACQ48541.1| N utilization substance protein A [Bacillus anthracis str. A0248] gi|300377475|gb|ADK06379.1| transcription elongation factor NusA [Bacillus cereus biovar anthracis str. CI] gi|324327710|gb|ADY22970.1| transcription elongation factor NusA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 368 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 146/363 (40%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|150390438|ref|YP_001320487.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF] gi|149950300|gb|ABR48828.1| NusA antitermination factor [Alkaliphilus metalliredigens QYMF] Length = 346 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 148/344 (43%), Positives = 233/344 (67%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LE ++ + + +K I RDV+ + ++ + + +G+ ++RVE+ +TGD+ ++ Sbjct: 3 LEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYSQK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE+ +I++ A++ DP+ + +V + P +FGR+A Q+AKQV++Q++REAE Sbjct: 63 KVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF ++ EII+GTV RV GNV ++LG ++ ++ +E I E DR+K+YI Sbjct: 123 RGIVYEEFINRESEIITGTVSRVAKGNVYINLGKTEAILGPNEQIPNEVYNHADRIKTYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GPQ+ +SRTHP + +LF +EVPEI++G+V+VK++SR+ GSR K+AVFS D Sbjct: 183 VEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFSIDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +GSRVQ +V EL+ EKIDI+ +S + F+ N+L PA V ++ + Sbjct: 243 NVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNPEDK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + Sbjct: 303 TARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTD 346 >gi|167627171|ref|YP_001677671.1| transcription elongation factor NusA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597172|gb|ABZ87170.1| transcription elongation factor [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 489 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 164/515 (31%), Positives = 292/515 (56%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ VA+++ ++ G V+ + + ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIRESVEVKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ ++ K+G+I+ G VKR Y +++DLGN+ +G++ + + ISRE R GD+++ Sbjct: 124 FEREKTARFYQSKIGDIVYGEVKRATYEILVIDLGNNAEGILPKKDLISRERFRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 S + +V + V+LSR + LF +EVPE+ ++ V V R+PG R+K+ V Sbjct: 184 SCVESVEVDEFGKPSTVMLSRASNMMLKALFKLEVPEVEEELINVVNVVREPGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W D + IN+L P + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWDEDMVQYAINSLSPVDSEDILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASALIGWKINVLSDTEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRDELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +E+L ++ G++ ++ L +N I TME+LA SVD+LL Sbjct: 420 SQA------LGGKKPAEDLLNMQGMNQELADKLAQNNIVTMENLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + + Q +I+ AR W E Sbjct: 469 ------------VAIDEKQATDLIMQARAP--WFE 489 >gi|163941553|ref|YP_001646437.1| transcription elongation factor NusA [Bacillus weihenstephanensis KBAB4] gi|229061419|ref|ZP_04198764.1| Transcription elongation protein nusA [Bacillus cereus AH603] gi|229134623|ref|ZP_04263433.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196] gi|229168555|ref|ZP_04296278.1| Transcription elongation protein nusA [Bacillus cereus AH621] gi|163863750|gb|ABY44809.1| NusA antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228614961|gb|EEK72063.1| Transcription elongation protein nusA [Bacillus cereus AH621] gi|228648884|gb|EEL04909.1| Transcription elongation protein nusA [Bacillus cereus BDRD-ST196] gi|228717842|gb|EEL69490.1| Transcription elongation protein nusA [Bacillus cereus AH603] Length = 368 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 148/363 (40%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSA 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|228935130|ref|ZP_04097957.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824495|gb|EEM70300.1| Transcription elongation protein nusA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 368 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 146/363 (40%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVLKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|108759193|ref|YP_630295.1| transcription termination factor NusA [Myxococcus xanthus DK 1622] gi|108463073|gb|ABF88258.1| transcription termination factor NusA [Myxococcus xanthus DK 1622] Length = 566 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 192/496 (38%), Positives = 281/496 (56%), Gaps = 47/496 (9%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + D VA +K IDR V+++ + D+++ AA+ +G ++ + +P+ G + LF+ + VVE Sbjct: 14 LVLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQAITVVE 73 Query: 71 EVENYT---CQISLKVARDRDPSIDIGGVVSDPLPPMD---------------------- 105 E+ + QISL A + ++ G + + D Sbjct: 74 EIVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDILRLKTF 133 Query: 106 ---FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSD 162 FGR+A Q+AKQVI+Q+ R+AER+ + E++D+ EI++G +R E GN+IVDLG ++ Sbjct: 134 RRGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVDLGRAE 193 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 V+ E + RE RPGDRV++Y+ DV RE +GPQ++LSR + KLF MEVPEI G Sbjct: 194 AVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEG 253 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 IV ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV + D Sbjct: 254 IVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDED 313 Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI Sbjct: 314 PARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDIN 373 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 +E R+ V+E++ L A GF ++A +A + G D Sbjct: 374 SESRVRELREFANRSLGSLP----GVNEMLVETLYAHGFRQARDIAEANAELLAQLPGID 429 Query: 403 EETAVEIQGRAR-------------EYLEGIDITLQKKI--RELGVSEELCSIPGIDSKI 447 +Q AR +Y + + EL E + + G+ K Sbjct: 430 PARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQPERMARVRGVGEKT 489 Query: 448 KVALGENGIKTMEDLA 463 L G +++ED+A Sbjct: 490 IEQLILAGYRSVEDIA 505 >gi|229019010|ref|ZP_04175852.1| Transcription elongation protein nusA [Bacillus cereus AH1273] gi|229162752|ref|ZP_04290709.1| Transcription elongation protein nusA [Bacillus cereus R309803] gi|228620634|gb|EEK77503.1| Transcription elongation protein nusA [Bacillus cereus R309803] gi|228742338|gb|EEL92496.1| Transcription elongation protein nusA [Bacillus cereus AH1273] Length = 368 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 147/363 (40%), Positives = 224/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|206602206|gb|EDZ38688.1| Transcription termination factor (NusA) [Leptospirillum sp. Group II '5-way CG'] Length = 452 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 172/431 (39%), Positives = 257/431 (59%), Gaps = 19/431 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++ Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE+VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREA Sbjct: 63 RRIVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+ Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D Sbjct: 183 LLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++DPVG+CVG++G RVQAVV EL EK+DI+ WSPD +TF+ AL PA +V + + Sbjct: 243 PNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSIKDMG 302 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ--- 360 V+V QLSLAIGRRG NVRLA++LTGW +DI +E + D Sbjct: 303 TEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVASL 362 Query: 361 --------------FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 V +A +L GF ++ +A + I+++ F +TA Sbjct: 363 AETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTA 422 Query: 407 VEIQGRAREYL 417 ++ A+++L Sbjct: 423 AKLIQTAQDFL 433 >gi|229031446|ref|ZP_04187446.1| Transcription elongation protein nusA [Bacillus cereus AH1271] gi|229098285|ref|ZP_04229232.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29] gi|229104378|ref|ZP_04235047.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28] gi|229117302|ref|ZP_04246680.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3] gi|229174482|ref|ZP_04302014.1| Transcription elongation protein nusA [Bacillus cereus MM3] gi|228609042|gb|EEK66332.1| Transcription elongation protein nusA [Bacillus cereus MM3] gi|228666202|gb|EEL21666.1| Transcription elongation protein nusA [Bacillus cereus Rock1-3] gi|228679076|gb|EEL33284.1| Transcription elongation protein nusA [Bacillus cereus Rock3-28] gi|228685183|gb|EEL39114.1| Transcription elongation protein nusA [Bacillus cereus Rock3-29] gi|228729735|gb|EEL80715.1| Transcription elongation protein nusA [Bacillus cereus AH1271] Length = 368 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 147/363 (40%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|23099050|ref|NP_692516.1| transcription elongation factor NusA [Oceanobacillus iheyensis HTE831] gi|22777278|dbj|BAC13551.1| transcriptional termination-antitermination factor [Oceanobacillus iheyensis HTE831] Length = 364 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 148/360 (41%), Positives = 232/360 (64%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++L + +A EK ID+D+++ + ++ A + + + S++RVE+N ETG ++++ Sbjct: 3 MQLFDAIENLAKEKGIDKDILMEALEAALISAYKKNFKSASNVRVELNEETGKMAVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+E+E+ +I L A+ DP+ ++ V+ + P DFGR+A Q+AKQV+ Q+VREAE Sbjct: 63 TVVDEIEDVQQEIPLDEAKKIDPNYEVDDVIEVEVTPKDFGRIAAQAAKQVVTQRVREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R + E+ D+ ++++G ++R + V V+LG + + E + E+ DR+K ++ Sbjct: 123 RGVIFSEYVDREEDVMTGIIQRKDPRFVYVNLGKIEAKLAESEQMPTEDYHVHDRLKVFV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ+ +SR+HP + +LF MEVPEIY+G V++K+V+R+ G R+K++V++ D Sbjct: 183 TKVENTSKGPQIFISRSHPGLLKRLFEMEVPEIYDGTVEIKSVAREAGDRSKISVYAPDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVG+CVG RG RVQA+VTEL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 243 EIDPVGSCVGQRGQRVQAIVTELKGEKIDIVQWSEDPVVYVSNALSPSKVVKVSVNEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E D E + Sbjct: 303 STTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAREEGLLDDGESYSDNENDL 362 >gi|89257073|ref|YP_514435.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica LVS] gi|115315429|ref|YP_764152.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica OSU18] gi|156503283|ref|YP_001429348.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009460|ref|ZP_02274391.1| transcription termination factor NusA [Francisella tularensis subsp. holarctica FSC200] gi|290954351|ref|ZP_06558972.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica URFT1] gi|295312215|ref|ZP_06803015.1| transcription elongation factor NusA [Francisella tularensis subsp. holarctica URFT1] gi|89144904|emb|CAJ80249.1| N utilization substance protein A [Francisella tularensis subsp. holarctica LVS] gi|115130328|gb|ABI83515.1| N utilization substance protein A [Francisella tularensis subsp. holarctica OSU18] gi|156253886|gb|ABU62392.1| transcription termination factor NusA [Francisella tularensis subsp. holarctica FTNF002-00] Length = 489 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 159/515 (30%), Positives = 294/515 (57%), Gaps = 38/515 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + VA EK I +D++ M +++ + +I V+I+ TGD R+ Sbjct: 4 ELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADRVWH 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V E++ +Y+ ++ V +++ ++ G V+ +P+ ++GR+A AKQ++++K++ Sbjct: 64 IVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEIKEYGRIAATMAKQILMKKIKN 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVK 183 ER++ +++K+G+I+ G +KR Y ++VDLGN+ +G++ + + I+RE R GD+++ Sbjct: 124 FEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGDKIR 183 Query: 184 SYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + + ++LSR+ + LF +EVPE+ ++ + V R+ G R+K+ V Sbjct: 184 ACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREHGFRSKVTV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTK 298 S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ D + IN+L P A + + Sbjct: 244 KSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILE 303 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +DE+ ++++V +E LS AIG+ G NVRLAS L GW I+++++ E + Sbjct: 304 VNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSI 359 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + F++A+++D A +L+ EG +E+LA + +E+ IEGFDEE E+Q RA+ + Sbjct: 360 VEKFVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVIL 419 Query: 419 GIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKG 478 + +++L + G+ + L +N I TMEDLA SVD+LL Sbjct: 420 SQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI----- 468 Query: 479 GNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 + ++Q ++I+ AR W E Sbjct: 469 ------------VDIDEEQATNLIMQARAP--WFE 489 >gi|30021905|ref|NP_833536.1| transcription elongation factor NusA [Bacillus cereus ATCC 14579] gi|229129092|ref|ZP_04258065.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4] gi|29897461|gb|AAP10737.1| N utilization substance protein A [Bacillus cereus ATCC 14579] gi|228654329|gb|EEL10194.1| Transcription elongation protein nusA [Bacillus cereus BDRD-Cer4] Length = 368 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 146/363 (40%), Positives = 224/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKI IV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIAIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|51892657|ref|YP_075348.1| transcription elongation factor NusA [Symbiobacterium thermophilum IAM 14863] gi|51856346|dbj|BAD40504.1| transcriptional termination-antitermination factor [Symbiobacterium thermophilum IAM 14863] Length = 360 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 150/346 (43%), Positives = 228/346 (65%), Gaps = 3/346 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E+L+ D + E+ I R+V++ + ++ A R +G+ ++RV + +TG+ ++ Sbjct: 2 KAEILEALDDLVRERGISREVLIEAIEAALISAYRRNFGSAQNVRVFFDDKTGEYRVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEV + Q+SL+ AR ++PS+ +G V + P DFGR+A Q+AKQV++Q++REA Sbjct: 62 KEIVEEVTDPRLQVSLEEARMKNPSLQLGDVFEVEVTPRDFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETISRENLRPGDRV 182 ER Y E+ + GEI++G V+R + V L + V+ +E I E R+ Sbjct: 122 ERGMIYEEYSSREGEIVTGLVQRQDPKTRTVYLELARGVEAVLTANEQIPGERYVENQRI 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+Y+ +V+R +GP + +SRTHP + +LF +EVPEI++G V++K ++R+ GSR+K+AV Sbjct: 182 KAYVIEVKRTTKGPAIAVSRTHPGLLKRLFELEVPEIHDGTVEIKGIAREAGSRSKIAVM 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + D ++DPVGACVG +G RVQ +V EL+ EKID+V WSPD FV AL PA VT+VV D Sbjct: 242 ARDPNVDPVGACVGQKGQRVQNIVDELQGEKIDVVEWSPDPEVFVAKALSPAKVTQVVCD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 E+ VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 EESRIARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAE 347 >gi|229157392|ref|ZP_04285470.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342] gi|228626119|gb|EEK82868.1| Transcription elongation protein nusA [Bacillus cereus ATCC 4342] Length = 368 Score = 362 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 146/363 (40%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSI 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|42521112|ref|NP_967027.1| transcription elongation factor NusA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410853|gb|AAS14961.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 520 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 197/511 (38%), Positives = 324/511 (63%), Gaps = 17/511 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKL 81 Query: 67 EVVEEV--ENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V+++ E + I+L A+ +G VS L ++ + + A+Q I Q Sbjct: 82 KVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVS-ELLSLNTDLASARIAQQKIAQV 140 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+ Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDK 200 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+YI V+ G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV Sbjct: 201 VKAYIQTVKHSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++ Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ + Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + + Sbjct: 441 DRKIEELKSLGMEDDVINLT-LSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSSDSK 499 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E KD V+S+II AR K+G I Sbjct: 500 EDL----------KDTVDSIIIEARKKLGLI 520 >gi|262197038|ref|YP_003268247.1| NusA antitermination factor [Haliangium ochraceum DSM 14365] gi|262080385|gb|ACY16354.1| NusA antitermination factor [Haliangium ochraceum DSM 14365] Length = 538 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 190/488 (38%), Positives = 283/488 (57%), Gaps = 39/488 (7%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + D V +K+I+RDV++ + +I AA+ +G ++ + N +TG + LF ++ VVE Sbjct: 7 MVIDQVGRDKNIERDVLVQALEQAILTAAKKTFGASRELEAQYNEDTGVVDLFLIVNVVE 66 Query: 71 EVEN--YTCQISLKVARDRDPSIDIGGVVSDPL-------------------------PP 103 + E+ Y +I+ A +IG + + Sbjct: 67 DEEDAIYGREITAPDAETHGLEAEIGDELLFQVFYRAEDNERASEQDAKFGDLIDLKNAH 126 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDG 163 FGR+A Q+AKQVI Q+VREAERD Y E+KD+ GE+I+G V+R E G+++VDLG ++ Sbjct: 127 KRFGRIAAQTAKQVIYQRVREAERDNVYNEYKDRKGELITGIVRRFERGSIVVDLGRAEA 186 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 ++ + + RE+ R GD +K+Y+ D+ R RGPQ++LSRTH + KLF EVPEIY I Sbjct: 187 ILPTRDQVPRESYRVGDSIKAYVLDIDRNARGPQIILSRTHKGLLEKLFEQEVPEIYEKI 246 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V++++ +R+PG+RAK+AV S D +DPVGACVGM+GSRVQAVV ELR EKIDIV + D Sbjct: 247 VRIESSAREPGARAKIAVSSRDRDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPYDEDP 306 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FV NA+ PA V++V++D D R+E++VP ++LSLAIG++GQNVRLASQLTGW IDI + Sbjct: 307 ARFVCNAIAPAEVSRVLIDADGHRMELVVPDDKLSLAIGKKGQNVRLASQLTGWRIDIHS 366 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E + + + +D+ +A + G+ V EL+ E+A + G D Sbjct: 367 ESKIQDLER----RAKEQLAAVEGMDDDLADTVFRLGWRSVGELSRAAPEELAGVPGIDG 422 Query: 404 -ETAVEIQGRAREYLEGIDITLQKKIRE------LGVSEELCSIPGIDSKIKVALG-ENG 455 E ++ AR +LE + + RE L E L + + I L E Sbjct: 423 VEVGRQVVAGARAFLEEEKLRQEHARREADRRNSLSDRERLLEVRDMSEAIADQLAEEAQ 482 Query: 456 IKTMEDLA 463 + +EDLA Sbjct: 483 VMRVEDLA 490 >gi|58696914|ref|ZP_00372417.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|58698399|ref|ZP_00373311.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225631019|ref|YP_002727810.1| transcription elongation factor NusA [Wolbachia sp. wRi] gi|13569584|gb|AAK31158.1|AF348330_4 N utilization substance protein A [Wolbachia sp. wRi] gi|58535081|gb|EAL59168.1| N utilization substance protein A, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58536861|gb|EAL60065.1| N utilization substance protein A [Wolbachia endosymbiont of Drosophila simulans] gi|225593000|gb|ACN96019.1| transcription elongation factor NusA [Wolbachia sp. wRi] Length = 520 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 195/511 (38%), Positives = 323/511 (63%), Gaps = 17/511 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D DVV+ + +I+ A YG+ S I V+I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFDVVIKALESAIEAVAHQKYGSKSKIVVDIDRNTGKVTSYRKL 81 Query: 67 EVVEEV--ENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +V+++ E + I+L A+ +G VS L ++ + + A+Q I Q Sbjct: 82 KVIDDESNEKENTECESITLTQAKLIKGDAKVGDTVS-ELLSLNTDLASARIAQQTIAQI 140 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +++ E +QY EFKDKVGEI G VK+VEY ++I+D+ + + E+ R GD+ Sbjct: 141 IKDEESKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDINGTRAYLPLRNLTGGESFREGDK 200 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+YI V+R G Q++LSRTH F+ L + E+PEI +G+V +K ++RD GSR+K+AV Sbjct: 201 VKAYIQTVKRSDDGRQIILSRTHEGFLEALLNQEIPEIADGLVTIKGIARDAGSRSKVAV 260 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 FS D +IDPVGACVG++G R++ ++ EL EKID++ +S D FVI A+ PA V+KV++ Sbjct: 261 FSPDKNIDPVGACVGVKGDRIKTIIHELNGEKIDVINYSSDLGQFVIKAITPAEVSKVII 320 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+ ++ + Sbjct: 321 DENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRSKELSQCSAL 380 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F +A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA +YL+ + Sbjct: 381 FAEALNLEEIMGQLLVTEGFSSVEDISSASIKELASIEGFNEDIANELHNRANKYLKAEN 440 Query: 422 ITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNI 481 ++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + + Sbjct: 441 DRKIEELKSLGMEDDVINLT-LSIDNKIALSKHDIKTLEDIADLSSYEFCSILSSSSDSK 499 Query: 482 EKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E + +S+II AR K+G I Sbjct: 500 EDLKDIV----------DSIIIEARKKLGLI 520 >gi|126652571|ref|ZP_01724736.1| transcription elongation factor NusA [Bacillus sp. B14905] gi|126590699|gb|EAZ84815.1| transcription elongation factor NusA [Bacillus sp. B14905] Length = 379 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 154/365 (42%), Positives = 231/365 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E RP DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYRPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSATSTFVPAEDEE 363 Query: 368 VDEII 372 D Sbjct: 364 SDFDE 368 >gi|294500900|ref|YP_003564600.1| transcription termination factor NusA [Bacillus megaterium QM B1551] gi|295706246|ref|YP_003599321.1| transcription termination factor NusA [Bacillus megaterium DSM 319] gi|294350837|gb|ADE71166.1| transcription termination factor NusA [Bacillus megaterium QM B1551] gi|294803905|gb|ADF40971.1| transcription termination factor NusA [Bacillus megaterium DSM 319] Length = 370 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 151/367 (41%), Positives = 225/367 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + EK I +DV++ + ++ A + + ++RV++N E G + +F + Sbjct: 4 ELFDALVILEKEKGISKDVIIEAIEAALISAYKRNFNQAQNVRVDLNLERGSMRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDPRLEISVEEAQTINPNFQLDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ + E + E +P DR+K YI Sbjct: 124 GVIYSEFSDREEDIMTGIVQRQDSRFIYVSLGKIEALLPQSEQMPNEQYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF EVPEIY+G V++K+V+R+ G R+K++V S + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEKEVPEIYDGTVELKSVAREAGDRSKISVHSEYAE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQAVV EL+ EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQAVVNELKGEKIDIVRWSNDPVEFVANALSPSKVVDVIVDENEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI ++ E N Q Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSQSEAEQEGMVVKNSDDMLVSQHAF 363 Query: 368 VDEIIAH 374 + Sbjct: 364 DSDEDME 370 >gi|85860522|ref|YP_462724.1| transcription elongation factor NusA [Syntrophus aciditrophicus SB] gi|85723613|gb|ABC78556.1| transcription elongation factor [Syntrophus aciditrophicus SB] Length = 420 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 177/419 (42%), Positives = 269/419 (64%), Gaps = 5/419 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ + + ++ +D+ V++ + ++ AAR G DI N E G+I +F+ Sbjct: 4 ELKRLIEQMGKDRGLDKSVIIEALETAMLTAARKKLGAHVDIEAHYNDELGEIEVFQFKT 63 Query: 68 VVEEVENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE+V + QIS++ A RD D + G + + FGR+AVQ+AKQ+I+Q+V++AE Sbjct: 64 VVEKVVDPDMQISIEAAHRDLDEEAEPGDSLGMKIDASTFGRIAVQTAKQIIVQRVKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y E+KD+ GE+++G V+R E G++IV+LG ++GVI E I RE + GDR++SYI Sbjct: 124 RDNVYDEYKDRKGELVNGFVQRFEAGSIIVNLGRAEGVIPVSEQIHREVYKRGDRIRSYI 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ++LSRTHP F+ LF +EVPEI G+++V V+R+PG RAK+AV + D Sbjct: 184 CEVKKVSKGPQIILSRTHPNFLKALFEVEVPEIAEGLIEVLGVAREPGKRAKIAVRTKDK 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 IDPVGACVGMRG+RVQ+VV ELR EKIDI+ +S D + +VI+AL PA V+ V + E+ Sbjct: 244 DIDPVGACVGMRGARVQSVVQELRGEKIDIIPYSEDPSQYVISALSPAKVSHVTVYENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QLSLAIG+ GQNVRLA +LTGW ID+ +E D+ + D+ + Sbjct: 304 AMEVVVPDDQLSLAIGKNGQNVRLAVKLTGWKIDVKSESVDAGSENADYRTLLKIP---- 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 ++E +A L +G V +A +++I G +E TA A ++ D + Sbjct: 360 GMEEAMAERLFNKGLKSVAMVAAADPEMLSAIPGVEERTATLWIEEAGRIIDEEDAASK 418 >gi|169827165|ref|YP_001697323.1| transcription elongation factor NusA [Lysinibacillus sphaericus C3-41] gi|168991653|gb|ACA39193.1| Transcription elongation protein [Lysinibacillus sphaericus C3-41] Length = 379 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 153/365 (41%), Positives = 229/365 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E P DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGETYHPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSATSTFVPAVDEE 363 Query: 368 VDEII 372 D Sbjct: 364 SDFEE 368 >gi|299534743|ref|ZP_07048073.1| transcription elongation factor NusA [Lysinibacillus fusiformis ZC1] gi|298729831|gb|EFI70376.1| transcription elongation factor NusA [Lysinibacillus fusiformis ZC1] Length = 379 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 154/365 (42%), Positives = 230/365 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL +A+ +K I RDV++ + ++ A + + ++RV++N + G I +F + Sbjct: 4 DLLDALNALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLDKGSIRVFSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ QISL+ A+ +P+ + +V + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLQISLEDAKVINPAYQLEDIVEQEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ D+ +I++G V+R++ N+ V LG + + +E I E+ P DR+K YI Sbjct: 124 GLIYEQYVDREDDIVTGVVERLDARNIYVGLGKVEAALPVNEQIQGESYHPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY GIV++K+++R+ G R+K++VF+ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYEGIVEIKSIAREAGDRSKISVFAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVIFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSATSTFIPADDEE 363 Query: 368 VDEII 372 D Sbjct: 364 SDFDD 368 >gi|167635811|ref|ZP_02394120.1| N utilization substance protein A [Bacillus anthracis str. A0442] gi|170687901|ref|ZP_02879115.1| N utilization substance protein A [Bacillus anthracis str. A0465] gi|254683477|ref|ZP_05147337.1| transcription elongation factor NusA [Bacillus anthracis str. CNEVA-9066] gi|254739620|ref|ZP_05197314.1| transcription elongation factor NusA [Bacillus anthracis str. Kruger B] gi|167528768|gb|EDR91526.1| N utilization substance protein A [Bacillus anthracis str. A0442] gi|170668217|gb|EDT18966.1| N utilization substance protein A [Bacillus anthracis str. A0465] Length = 368 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 146/363 (40%), Positives = 223/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NP+ G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPQVGIIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DE+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVVAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|288556945|ref|YP_003428880.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4] gi|288548105|gb|ADC51988.1| transcription elongation factor NusA [Bacillus pseudofirmus OF4] Length = 378 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 147/365 (40%), Positives = 230/365 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK I ++V++ + ++ + + ++RV++N + G I +F Sbjct: 2 NSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFSQAQNVRVDVNRDNGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV + +ISL A+ +P+ ++ VV + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KTIVEEVFDARLEISLDEAKSINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E + DR+K++ Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALLPLNEQMPNETYKHNDRIKAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV + + Sbjct: 182 ITKVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHAEN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV ++E+ Sbjct: 242 PEVDPVGSCVGPRGQRVQTIVDELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + + Sbjct: 302 KMTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEARELGLLNEEDSSASEYED 361 Query: 366 INVDE 370 +E Sbjct: 362 PASEE 366 >gi|325138675|gb|EGC61230.1| Transcription elongation protein nusA [Neisseria meningitidis ES14902] Length = 413 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 186/430 (43%), Positives = 275/430 (63%), Gaps = 25/430 (5%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 I IG + LP FGR A Q+AKQ+I+Q++R+AER++ EF +I+SGTVKRVE Sbjct: 5 IQIGEYYEEQLPNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVE 64 Query: 151 YGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR--GPQVLLSRTHPQ 206 +IV++ G D +I RD+ I REN R GDR+++ V QV+LSRT Sbjct: 65 RHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGD 124 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266 F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+RGSRV AV Sbjct: 125 FLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVS 184 Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQ 326 EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV + QL+LAIGR GQ Sbjct: 185 NELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVDENQLALAIGRGGQ 244 Query: 327 NVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 NVRLAS LTGW ++I+T E + + FM +NVDE A +LV EGFA +EE Sbjct: 245 NVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEE 304 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 +A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++ ++ GID+ Sbjct: 305 VAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDMRNLEGIDAD 362 Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHAR 506 + +L E GI T +DLA +VD+L+ + G ++ +++I+ AR Sbjct: 363 MLRSLAEAGITTRDDLAELAVDELIEIT-----------------GVNEETAKAVILTAR 405 Query: 507 YKMGWIEKEK 516 W ++K Sbjct: 406 EH--WFTEDK 413 >gi|190571750|ref|YP_001976108.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019234|ref|ZP_03335041.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190358022|emb|CAQ55491.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995343|gb|EEB55984.1| N utilization substance protein A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 517 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 194/508 (38%), Positives = 323/508 (63%), Gaps = 14/508 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L++++ A ++ +K +D +++++ + +I+ A+ YG+ S I V I+ TG ++ +R L Sbjct: 22 LDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQL 81 Query: 67 EVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V+ + EN I L A+ +G +S L ++ V+ + A+Q I + ++ Sbjct: 82 KVINDESNENECDLIKLTQAKLIKEDAKVGDTIS-ELISLNTDLVSARIAQQKISEIIKN 140 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E +QY EFKDKVGE+ G VK+VEY ++I+D+ + I E+ R GD+VK+ Sbjct: 141 EELKKQYEEFKDKVGEMRYGIVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVKA 200 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI V+R G Q++LSRTH F+ L + EVPEI +G++ +K ++RD GSR+K+AVFSS Sbjct: 201 YIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLITIKGIARDAGSRSKIAVFSS 260 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +IDPVGACVG++G R++ ++ EL EKID++ +S D F+I A+ PA V+KV++DE+ Sbjct: 261 DRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDEN 320 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 IE+IV ++QLSLAIG++GQNVRLAS+L GW I+I++ +++S R K+F++ + F + Sbjct: 321 ENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFAE 380 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 A+N++EI+ LLV EGF+ VE+++ I E+ASIEGF+E+ A E+ RA YL+ + Sbjct: 381 ALNLEEIMGQLLVTEGFSSVEDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDRK 440 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 ++++ LG+ +++ ++ + K+AL ++ IKT+ED+A S + + N + Sbjct: 441 IEELKNLGMEDDVINLA-LSIDNKIALSKHNIKTLEDIADLSNYEFCSILSSSTNNKDNL 499 Query: 485 DGFLSSLGTPKDQVESMIIHARYKMGWI 512 KD + +II AR K+G I Sbjct: 500 ----------KDTADLIIIEARKKLGLI 517 >gi|152976182|ref|YP_001375699.1| transcription elongation factor NusA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024934|gb|ABS22704.1| NusA antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 366 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 143/342 (41%), Positives = 219/342 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQNGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVSVLVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVIVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQ 345 >gi|75760860|ref|ZP_00740874.1| N utilization substance protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902319|ref|ZP_04066476.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 4222] gi|74491644|gb|EAO54846.1| N utilization substance protein A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857288|gb|EEN01791.1| Transcription elongation protein nusA [Bacillus thuringiensis IBL 4222] Length = 368 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 148/363 (40%), Positives = 222/363 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV N E G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNTEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVHAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSV 363 Query: 368 VDE 370 DE Sbjct: 364 EDE 366 >gi|69246862|ref|ZP_00604154.1| Transcription termination factor NusA [Enterococcus faecium DO] gi|257882944|ref|ZP_05662597.1| transcription termination factor NusA [Enterococcus faecium 1,231,502] gi|257884342|ref|ZP_05663995.1| transcription termination factor NusA [Enterococcus faecium 1,231,501] gi|257889277|ref|ZP_05668930.1| transcription termination factor NusA [Enterococcus faecium 1,231,410] gi|260560111|ref|ZP_05832289.1| transcription termination factor NusA [Enterococcus faecium C68] gi|261207401|ref|ZP_05922087.1| transcription termination factor NusA [Enterococcus faecium TC 6] gi|289566677|ref|ZP_06447094.1| transcription termination factor NusA [Enterococcus faecium D344SRF] gi|293560200|ref|ZP_06676702.1| transcription termination factor NusA [Enterococcus faecium E1162] gi|293567723|ref|ZP_06679065.1| transcription termination factor NusA [Enterococcus faecium E1071] gi|294613937|ref|ZP_06693872.1| transcription termination factor NusA [Enterococcus faecium E1636] gi|294620763|ref|ZP_06699970.1| transcription termination factor NusA [Enterococcus faecium U0317] gi|314937505|ref|ZP_07844838.1| transcription termination factor NusA [Enterococcus faecium TX0133a04] gi|314942164|ref|ZP_07849018.1| transcription termination factor NusA [Enterococcus faecium TX0133C] gi|314947496|ref|ZP_07850911.1| transcription termination factor NusA [Enterococcus faecium TX0082] gi|314951483|ref|ZP_07854532.1| transcription termination factor NusA [Enterococcus faecium TX0133A] gi|314992573|ref|ZP_07857991.1| transcription termination factor NusA [Enterococcus faecium TX0133B] gi|314995492|ref|ZP_07860592.1| transcription termination factor NusA [Enterococcus faecium TX0133a01] gi|68195043|gb|EAN09506.1| Transcription termination factor NusA [Enterococcus faecium DO] gi|257818602|gb|EEV45930.1| transcription termination factor NusA [Enterococcus faecium 1,231,502] gi|257820180|gb|EEV47328.1| transcription termination factor NusA [Enterococcus faecium 1,231,501] gi|257825637|gb|EEV52263.1| transcription termination factor NusA [Enterococcus faecium 1,231,410] gi|260073946|gb|EEW62270.1| transcription termination factor NusA [Enterococcus faecium C68] gi|260078292|gb|EEW65997.1| transcription termination factor NusA [Enterococcus faecium TC 6] gi|289161536|gb|EFD09419.1| transcription termination factor NusA [Enterococcus faecium D344SRF] gi|291589566|gb|EFF21372.1| transcription termination factor NusA [Enterococcus faecium E1071] gi|291593212|gb|EFF24786.1| transcription termination factor NusA [Enterococcus faecium E1636] gi|291599743|gb|EFF30753.1| transcription termination factor NusA [Enterococcus faecium U0317] gi|291605872|gb|EFF35304.1| transcription termination factor NusA [Enterococcus faecium E1162] gi|313590326|gb|EFR69171.1| transcription termination factor NusA [Enterococcus faecium TX0133a01] gi|313592865|gb|EFR71710.1| transcription termination factor NusA [Enterococcus faecium TX0133B] gi|313596323|gb|EFR75168.1| transcription termination factor NusA [Enterococcus faecium TX0133A] gi|313599087|gb|EFR77932.1| transcription termination factor NusA [Enterococcus faecium TX0133C] gi|313643146|gb|EFS07726.1| transcription termination factor NusA [Enterococcus faecium TX0133a04] gi|313646046|gb|EFS10626.1| transcription termination factor NusA [Enterococcus faecium TX0082] Length = 391 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 153/402 (38%), Positives = 233/402 (57%), Gaps = 19/402 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMT--------EFYENQEQQK 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 +E+ +V + F+ ET E Sbjct: 356 ETEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387 >gi|89098596|ref|ZP_01171478.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911] gi|89086558|gb|EAR65677.1| transcription elongation factor NusA [Bacillus sp. NRRL B-14911] Length = 394 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 153/350 (43%), Positives = 228/350 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I RD+++ + ++ A R + ++R+++N +G + +F E Sbjct: 4 ELLDALTLLEKEKGISRDIIIEAIEAALISAYRRNFNQAQNVRIDLNLGSGTMRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + +ISL A+ +P+ + VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEQVFDPRLEISLDEAKGINPNYQVEDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V LG + ++ +E + E +P DR+K +I Sbjct: 124 GIIYSEFIDREEDIMTGIVQRQDPKFIYVSLGKIEAILPANEQMPNEQYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K++V + +S Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIYDGTVEIKSVSREAGDRSKISVHADNSE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQAVV EL+ EKIDIV WSPD FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGTRVQAVVNELKGEKIDIVKWSPDPVVFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETEARESGIFPREE 353 >gi|167465394|ref|ZP_02330483.1| transcription elongation factor NusA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382349|ref|ZP_08056256.1| transcription elongation factor NusA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153702|gb|EFX46077.1| transcription elongation factor NusA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 365 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 149/364 (40%), Positives = 230/364 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + EK I +D+++ + ++ + + + T ++RV+IN +TG I +F Sbjct: 2 NSEFIEALSEIEREKGISKDLLIDAIEAAMISSYKRNFNTAQNVRVDINRQTGVIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V + +ISL AR+ + + +G +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KTVVEDVLDPRLEISLTAAREINQNYQLGDIVEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F DK +I++G V+R + + VDLG + V+ +E + E + GDRVK+Y Sbjct: 122 ERGLIYNAFIDKEEDIVTGIVQRQDQRSYYVDLGKVEAVLPLNEVMPTEKFKHGDRVKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S + Sbjct: 182 ITKVENTTKGPQIILSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVDSRN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQ +V ELR EKIDIV W + +V NAL P+ V +V + ED Sbjct: 242 EEVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRWMESTEEYVANALSPSKVLEVNIFEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + + Sbjct: 302 KMARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEFGRPRTSTEEMHQDS 361 Query: 366 INVD 369 I++D Sbjct: 362 ISID 365 >gi|124515701|gb|EAY57210.1| transcription termination factor (NusA) [Leptospirillum rubarum] Length = 452 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 171/431 (39%), Positives = 255/431 (59%), Gaps = 19/431 (4%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + D + EK I ++ ++ + ++ AAR YG + +VEINP TG++ + ++ Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VE VE+ + +ISL A + DP ++G + L DFGR+A Q+AKQV+ QKVREA Sbjct: 63 RRIVERVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E D EF + G+I++G + E N IVDLG ++ V+ E + RE+ R GDR+K+ Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQMPRESFRRGDRIKAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + D+R RGPQ++LSRTHP F+ +LF EVPEI GI++V+ V R+PG RAK+AV+S D Sbjct: 183 LLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSRD 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED- 304 ++DPVG+CVG++G RVQAVV EL EK+DI+ W+ D ATF+ AL PA +V + + Sbjct: 243 PNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWNSDPATFIARALSPAKAVRVSIKDMG 302 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ--- 360 V+V QLSLAIGRRG NVRLA++LTGW +DI +E + D Sbjct: 303 SEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVASL 362 Query: 361 --------------FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 V +A +L GF ++ +A + I+++ F +TA Sbjct: 363 AETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKTA 422 Query: 407 VEIQGRAREYL 417 ++ A+++L Sbjct: 423 AKLIQTAQDFL 433 >gi|310641593|ref|YP_003946351.1| transcription elongation factor-like protein [Paenibacillus polymyxa SC2] gi|309246543|gb|ADO56110.1| Transcription elongation factor-like protein [Paenibacillus polymyxa SC2] Length = 365 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 144/363 (39%), Positives = 231/363 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++ Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VEEV + +ISL AR+ +P + V + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVEEVLDPRTEISLPAAREINPHFQLEDVAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+YI Sbjct: 123 RGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLSELMPNEKFNHLDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S ++ Sbjct: 183 TKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRNA 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+ Sbjct: 243 EVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + ++ Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEELGRPRTSTDEMHQDSV 362 Query: 367 NVD 369 +VD Sbjct: 363 SVD 365 >gi|297617185|ref|YP_003702344.1| transcription termination factor NusA [Syntrophothermus lipocalidus DSM 12680] gi|297145022|gb|ADI01779.1| transcription termination factor NusA [Syntrophothermus lipocalidus DSM 12680] Length = 350 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 147/344 (42%), Positives = 233/344 (67%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + E+ I ++V++ + +++ A + +G++ ++ V+++ E+G++ ++ Sbjct: 4 ELIQALGEIEKERGIPKEVLVEAIESALRTAYKKNFGSLQNVTVQMDMESGEVKVYAKKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E V++ ++ L AR+ P ++IG + + P DFGR+A Q+AKQV+IQ++REAER Sbjct: 64 VAETVKDERLEVRLAEAREIYPEVEIGDEIDVEVTPADFGRIAAQTAKQVVIQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF ++ GEI++GTV+RVE VI++LG ++ ++ + I E PG R+K+YI Sbjct: 124 SIVFNEFSNRAGEIVTGTVQRVEQKTVIINLGRTEALMGSQDQIPNEAYEPGQRIKAYIS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R +GPQ+ LSRTHP F+ +LF +EVPEIY G+V++K+++R+ GSR+K++V+S + Sbjct: 184 EVKRSAKGPQIFLSRTHPNFLKRLFELEVPEIYEGLVEIKSIAREAGSRSKISVYSRNEK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G RVQ +V EL EKIDI+ WSPD ++ NAL P+ V V E Sbjct: 244 VDPVGACVGPKGLRVQNIVRELNGEKIDIIKWSPDIEQYIANALSPSKVVSVEASESEKM 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + R Sbjct: 304 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVEAVR 347 >gi|261407939|ref|YP_003244180.1| NusA antitermination factor [Paenibacillus sp. Y412MC10] gi|329929345|ref|ZP_08283098.1| transcription termination factor NusA [Paenibacillus sp. HGF5] gi|261284402|gb|ACX66373.1| NusA antitermination factor [Paenibacillus sp. Y412MC10] gi|328936714|gb|EGG33157.1| transcription termination factor NusA [Paenibacillus sp. HGF5] Length = 365 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 145/363 (39%), Positives = 231/363 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+YI Sbjct: 123 RGLIYSAFIDKEDDIVTGTLQRQDLRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 183 TKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRND 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V ELR EKIDIV +S +V NAL P+ V +V + ED Sbjct: 243 EVDPVGSCVGPKGLRVQTIVNELRGEKIDIVRYSDQVEEYVANALSPSKVLEVQVFEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + ++ Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQAEQEFGRPKSQSGEMHQDSV 362 Query: 367 NVD 369 +VD Sbjct: 363 SVD 365 >gi|293556649|ref|ZP_06675214.1| transcription termination factor NusA [Enterococcus faecium E1039] gi|291601184|gb|EFF31471.1| transcription termination factor NusA [Enterococcus faecium E1039] Length = 391 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 153/402 (38%), Positives = 233/402 (57%), Gaps = 19/402 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMT--------EFYENQEQQK 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 +E+ +V + F+ ET E Sbjct: 356 EAEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387 >gi|257878526|ref|ZP_05658179.1| transcription termination factor NusA [Enterococcus faecium 1,230,933] gi|257894715|ref|ZP_05674368.1| transcription termination factor NusA [Enterococcus faecium 1,231,408] gi|294618723|ref|ZP_06698255.1| transcription termination factor NusA [Enterococcus faecium E1679] gi|257812754|gb|EEV41512.1| transcription termination factor NusA [Enterococcus faecium 1,230,933] gi|257831094|gb|EEV57701.1| transcription termination factor NusA [Enterococcus faecium 1,231,408] gi|291595036|gb|EFF26381.1| transcription termination factor NusA [Enterococcus faecium E1679] Length = 391 Score = 360 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 153/402 (38%), Positives = 234/402 (58%), Gaps = 19/402 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE + Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMT--------EFYENQEQQK 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 +E+ +V + F+ ET E Sbjct: 356 ETEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387 >gi|329577093|gb|EGG58566.1| transcription termination factor NusA [Enterococcus faecalis TX1467] Length = 399 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 147/361 (40%), Positives = 228/361 (63%), Gaps = 1/361 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363 Query: 367 N 367 + Sbjct: 364 D 364 >gi|229012999|ref|ZP_04170164.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048] gi|228748253|gb|EEL98113.1| Transcription elongation protein nusA [Bacillus mycoides DSM 2048] Length = 364 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 222/362 (61%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + EK I +D+++ + ++ A + + ++RV NPE G I + +V Sbjct: 1 MLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKDV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 61 VDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAERG 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 121 VIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFITK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GPQ+ +SRTHP + +LF MEVPEIY+G V++++V+R+ G R+K++V++ + + Sbjct: 181 VEKTTKGPQIYVSRTHPGLLKRLFEMEVPEIYDGTVEIRSVAREAGDRSKISVYAENIDV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG+CVG +G RVQ VV EL+ EKIDIV WS D +V NAL P+ V KV++DE Sbjct: 241 DPVGSCVGPKGQRVQRVVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEAEKAT 300 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + + F Sbjct: 301 TVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQLGIVTEEDSVIAFGFDSAE 360 Query: 369 DE 370 DE Sbjct: 361 DE 362 >gi|298528714|ref|ZP_07016118.1| NusA antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298512366|gb|EFI36268.1| NusA antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 432 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 162/404 (40%), Positives = 259/404 (64%), Gaps = 5/404 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL +I D ++ +K IDRD+++ + ++++ + YG+ DI V N + G+I +++ Sbjct: 3 LELKKIIDQISKDKGIDRDMLVDTLEEAVRSSVYKKYGSNLDIEVNFNEDNGEIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+E+ + +I L+ A++ DP++ + + L D GR+A QSAKQV++QK+R+AE Sbjct: 63 VVVDEIGDPNNEILLEDAKEHDPNVQLEDELGFTLDVKDLGRIAAQSAKQVLMQKMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD++GEIISG ++R + I++LG ++ ++ RDE I +E GDRV++YI Sbjct: 123 QEIIYEEYKDRIGEIISGIIQRRDRAGWIINLGRTEALLPRDEQIPKERFHRGDRVEAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVRRE R PQ+++SR+HP++++ LF EVPEI +G +++ V RDPG RAK+ V + D Sbjct: 183 IDVRRESRTPQIIVSRSHPEYLISLFKREVPEISDGTIKIMNVVRDPGKRAKVGVMTKDM 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG++GSR+ +V EL+ E+IDIV+WSPD AT+ NAL PA +T++ +DED Sbjct: 243 DVDPVGACVGVKGSRIHNIVQELKGERIDIVIWSPDIATYAANALSPARITRITVDEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QL+ AIG++GQNV+LAS L GW ID+ TE + + I Sbjct: 303 SLEVVVPDDQLTPAIGQKGQNVKLASSLLGWKIDVYTESRYNEVYEHHQVMEQLASAAGI 362 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 ++ E EGF ++ L E+ +E ++ Sbjct: 363 SISEFN-----REGFDSLDSLVQSTDEELKQKLDLSDENLESLK 401 >gi|229086368|ref|ZP_04218545.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44] gi|228696980|gb|EEL49788.1| Transcription elongation protein nusA [Bacillus cereus Rock3-44] Length = 366 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 144/342 (42%), Positives = 220/342 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVSNVFDPRLEISVEEARQMNPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ ++ Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENTD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV++DED Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPVEYVANALSPSQVVKVLVDEDEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQ 345 >gi|196229760|ref|ZP_03128624.1| NusA antitermination factor [Chthoniobacter flavus Ellin428] gi|196226086|gb|EDY20592.1| NusA antitermination factor [Chthoniobacter flavus Ellin428] Length = 421 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 168/416 (40%), Positives = 265/416 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L D +K I R+V+L + +++ AAR G D+RV+I+P++G++ ++ Sbjct: 3 NSEILAGLDFFERDKGIKREVLLEAINNAVLAAARKAVGPAKDLRVDIDPKSGEMKVYAK 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L VVE+VEN +I L +A+ + +G + P+ P DFGR+A Q+AKQ ++Q++R+A Sbjct: 63 LIVVEKVENKHDEIKLDLAKKFKNDVQLGEELEVPVTPRDFGRIAAQTAKQAMMQRIRQA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EFKD+ GEI+SGTV+R E +V+VDLG + V+ E + E+ GDR+++Y Sbjct: 123 EKEMIYDEFKDRAGEIVSGTVRRFERLDVVVDLGKFEAVMPNKERVQTEDYNVGDRIRAY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V+ RGP++++SR+HP F+ +LF EV EI + V++K ++R+ G R K+AV+S++ Sbjct: 183 VVAVQNGARGPEIIISRSHPNFVRRLFETEVSEIADRTVEIKGIAREAGHRTKIAVWSAN 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGMRG+RV+ +V EL +EK+DI+ WS D+ FV+ AL+PA V V LDE Sbjct: 243 DKVDPVGACVGMRGARVKNIVRELNNEKVDIIRWSSDTKEFVLEALKPAKVKSVTLDESK 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 I + V ++QLSLAIG+RGQN RL S+LTGW I+I ++ + + + + A Sbjct: 303 KNILIKVDEDQLSLAIGKRGQNARLTSRLTGWDINIEQDKSVIEDFNERVGKAAKTLADA 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 + +D+ +A LV G + +E L V+ +IA G E A EIQ A+ + Sbjct: 363 LGIDQAVAVSLVKGGLSTLETLTEVEPQDIADTVGIPLEKATEIQTAAKRASGSLA 418 >gi|327441013|dbj|BAK17378.1| transcription elongation factor [Solibacillus silvestris StLB046] Length = 375 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 148/361 (40%), Positives = 230/361 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ +K I RDV++ + ++ A + + ++RV++N +TG + ++ + Sbjct: 4 ELLDALTALEEQKGISRDVLIEAIEAALVTAYKRNFNQAQNVRVDLNLQTGSMVVYSRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +I+L+ A+ + + +IG VV + + P +FGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVEEVEDDRLEIALEDAKFINAAYEIGDVVEEEVTPRNFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D+ +I++G ++R + N+ V +G + + +E I E +P R++ YI Sbjct: 124 GLIYEEYVDREDDIVTGVIERQDARNIYVSIGKVEAALPVNEQIQGEVYKPTSRIRVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV++SRTHP + +LF MEVPEIY+G V++K+++R+ G R+K++V++ + Sbjct: 184 KVERTTRGPQVIVSRTHPGLLRRLFEMEVPEIYDGTVEIKSIAREAGDRSKISVYAHNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G+RVQ +V EL EKIDIV WS D FV NAL P+ V V ++E+ Sbjct: 244 VDPVGSCVGAKGARVQTIVNELNGEKIDIVEWSEDPVVFVANALSPSKVLDVQVNEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + T + Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPSETSTFVPREDAE 363 Query: 368 V 368 Sbjct: 364 E 364 >gi|308068697|ref|YP_003870302.1| transcription elongation protein nusA [Paenibacillus polymyxa E681] gi|305857976|gb|ADM69764.1| Transcription elongation protein nusA [Paenibacillus polymyxa E681] Length = 365 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 143/363 (39%), Positives = 231/363 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N +G I ++ Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNSGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VEEV + +ISL AR+ +P + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVEEVLDPRTEISLPAAREINPHFQLEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y +F DK +I++GTV+R + N+ +DLG + V+ E + E DR+K+YI Sbjct: 123 RGLIYNKFVDKEEDIVTGTVQRQDPRNIYIDLGKVEAVLPLGELMPNEKFSHLDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSR+HP + +LF +EVPEI++G+V++++V+R+ G R+K+AV S ++ Sbjct: 183 TKVENTTKGPQIMLSRSHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVHSRNA 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG RG+RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + E+ Sbjct: 243 EVDPVGSCVGPRGTRVQTIVNELRGEKIDIVRYSDNVDEYVANALSPSKVLEVQVFEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + ++ Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEEELGRPRTSTDEMHQDSV 362 Query: 367 NVD 369 +VD Sbjct: 363 SVD 365 >gi|315648098|ref|ZP_07901199.1| NusA antitermination factor [Paenibacillus vortex V453] gi|315276744|gb|EFU40087.1| NusA antitermination factor [Paenibacillus vortex V453] Length = 365 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 145/363 (39%), Positives = 232/363 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + + EK I +DV+ + ++ + + + T ++RV++N TG I +F Sbjct: 3 MDFIEAMNELEREKGISKDVLFEAIEAALISSYKRNFNTAQNVRVDMNRNTGVIKVFARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V+EV + +ISL AR+ +P I + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 LIVDEVLDPRTEISLHAAREINPHFQIEDIAEIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++GT++R + N+ +DLG + + E + E + GDR+K+YI Sbjct: 123 RGLIYSAFIDKEDDIVTGTLQRQDMRNIYIDLGKIEAALPLTELMPNEKFKHGDRIKAYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSRTHP + +LF +EVPEI++G+V++++V+R+ G R+K+AV+S + Sbjct: 183 TKVENTTKGPQIMLSRTHPGLLKRLFELEVPEIFDGVVEIRSVAREAGFRSKIAVYSRND 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V ELR EKIDIV +S + +V NAL P+ V +V + ED Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELRGEKIDIVRYSEEVEEYVANALSPSKVLEVQVFEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + ++ Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSESQAEQEFGRPKSQSGEMHQDSV 362 Query: 367 NVD 369 +VD Sbjct: 363 SVD 365 >gi|227551756|ref|ZP_03981805.1| transcription termination factor NusA [Enterococcus faecium TX1330] gi|257895648|ref|ZP_05675301.1| transcription termination factor NusA [Enterococcus faecium Com12] gi|293377741|ref|ZP_06623930.1| transcription termination factor NusA [Enterococcus faecium PC4.1] gi|227179061|gb|EEI60033.1| transcription termination factor NusA [Enterococcus faecium TX1330] gi|257832213|gb|EEV58634.1| transcription termination factor NusA [Enterococcus faecium Com12] gi|292643741|gb|EFF61862.1| transcription termination factor NusA [Enterococcus faecium PC4.1] Length = 391 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 152/391 (38%), Positives = 231/391 (59%), Gaps = 9/391 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEHQN 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 +E+ +V D E A +E Sbjct: 356 ETEELHDEAIVQSDLTDDEYEAIAFNNETVE 386 >gi|312898335|ref|ZP_07757725.1| transcription termination factor NusA [Megasphaera micronuciformis F0359] gi|310620254|gb|EFQ03824.1| transcription termination factor NusA [Megasphaera micronuciformis F0359] Length = 375 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 148/346 (42%), Positives = 217/346 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + ++ EK + DV+ + + A + Y + V ++ TGD S+ Sbjct: 2 NKELLSAIEYLSKEKGVTADVICDSLEAVLITAYKKEYDGNPNATVRLDRLTGDYSIVSP 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV + +ISL+ AR D + G + + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVAEVADEENEISLEDARAIDKGYEEGDEILVDVTPKNFGRIAAQAAKQVMIQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y EF + +II+G ++R+E NV +DLG ++ V+ E I E G R+K Y Sbjct: 122 ERNIVYDEFYGRTDDIITGIIQRIEQKNVYIDLGKAEAVLPYSEQIPTEEYTVGQRIKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR +G Q+ LSRTHP + +LF +EVPEIY+G+V++ +V+R+PG R+K+AV+S D Sbjct: 182 VVEVRNSPKGAQIQLSRTHPGLLKRLFELEVPEIYDGVVELHSVAREPGKRSKIAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGACVG +G+RVQ +V EL++EKIDIV W D A ++ NAL PA V V +DE Sbjct: 242 PNVDCVGACVGPKGARVQNIVMELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEGA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Sbjct: 302 KSSVVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAEDGD 347 >gi|228992544|ref|ZP_04152471.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM 12442] gi|228998592|ref|ZP_04158179.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17] gi|229006092|ref|ZP_04163780.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4] gi|228755168|gb|EEM04525.1| Transcription elongation protein nusA [Bacillus mycoides Rock1-4] gi|228761060|gb|EEM10019.1| Transcription elongation protein nusA [Bacillus mycoides Rock3-17] gi|228767178|gb|EEM15814.1| Transcription elongation protein nusA [Bacillus pseudomycoides DSM 12442] Length = 366 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 142/342 (41%), Positives = 220/342 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +D+++ + ++ A + + ++RV NPE G I + + Sbjct: 4 ELLDALLVLESEKGISKDIIIDAIEAALISAYKRNFNQAQNVRVSFNPEVGTIQVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +IS++ AR +P+ G V+ + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDNVFDPRLEISVEEARQINPNYQDGDVLEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I+ G V+R + + V LG + ++ E + E +P DR++ +I Sbjct: 124 GVIYSEFSDREEDIMVGIVQRQDARFIYVSLGKVEALLPVSEQMPNEQYKPHDRIRVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++++V+R+ G R+K++V++ + Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVEIRSVAREAGDRSKISVYAENID 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS D +V NAL P+ V KV+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQRIVDELKGEKIDIVRWSNDPIEYVANALSPSQVVKVLVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVVVPDHQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAKQ 345 >gi|219669697|ref|YP_002460132.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2] gi|219539957|gb|ACL21696.1| NusA antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 493 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 156/431 (36%), Positives = 252/431 (58%), Gaps = 1/431 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F Sbjct: 2 NMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ Q+S++ A+ DP+ I VV + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KNVVEEVEDSRTQVSMEEAQKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K++ Sbjct: 122 ERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D Sbjct: 182 VVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V + Sbjct: 242 ANVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Q + Sbjct: 302 KVALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEE 361 Query: 366 INVDEIIAHLLVAEGFADVEEL-ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + A + + D E + + + E E+ + E D Sbjct: 362 YDEFADYAEYENYDEYEDYSEYDDYEENEDYDENATYGENYDDELVYDENDQYEEFDAYQ 421 Query: 425 QKKIRELGVSE 435 +++ + Sbjct: 422 NEELPYEESED 432 >gi|89895266|ref|YP_518753.1| hypothetical protein DSY2520 [Desulfitobacterium hafniense Y51] gi|89334714|dbj|BAE84309.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 493 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 158/431 (36%), Positives = 252/431 (58%), Gaps = 1/431 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + ++ I D++ + ++ A + + ++ ++RV I+ TG+ +F Sbjct: 2 NMEFIEALHELEKDRGISADILFEAIEAALISAYKKNFASLQNVRVHIDRMTGEFKVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ Q+S++ AR DP+ I VV + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KNVVEEVEDARTQVSMEEARKIDPNYAIDDVVEYEVTPREFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ ++ G+I++G V+R + NVIVDLG + ++ E I E +P +R+K++ Sbjct: 122 ERGMIYDEYINREGDIVTGIVQRYDQKNVIVDLGKVEAILTAQEQIPGETYQPFERIKTF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQV+LSRTHP + +LF +EVPEI++G+V++K VSR+ G+R+K+AV+S D Sbjct: 182 VVEVKKTTKGPQVMLSRTHPGLIKRLFELEVPEIHDGLVEIKGVSREAGARSKIAVYSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG +GSRVQ +VTEL+ EKIDIV +S D FV NAL PA V V + Sbjct: 242 SNVDPVGACVGPKGSRVQTIVTELKGEKIDIVNYSTDPEEFVANALSPAKVVGVYPKPNE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + Q + Sbjct: 302 KVALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQALAQNLIPDKNEVQGEYEE 361 Query: 366 INVDEIIAHLLVAEGFADVEEL-ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + A + + D E + + + E E+ + E D Sbjct: 362 YDEFADYAEYENYDEYEDYSEYDDYEENEDYDENATYGENYDDELVYDENDQYEEFDAYQ 421 Query: 425 QKKIRELGVSE 435 +++ + Sbjct: 422 NEELPYEESED 432 >gi|332799221|ref|YP_004460720.1| NusA antitermination factor [Tepidanaerobacter sp. Re1] gi|332696956|gb|AEE91413.1| NusA antitermination factor [Tepidanaerobacter sp. Re1] Length = 357 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 146/342 (42%), Positives = 230/342 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E ++ + EK I +D++L + S+ A + YG+ ++ V I+ +TG++ +F Sbjct: 2 NIEFIEALAQIEKEKGISKDILLDALEASLISAYKKNYGSSQNVSVSIDRDTGEVKVFSK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +EV++ +I + A +P+ IG V+S + P FGR+A Q+AKQV++Q++REA Sbjct: 62 KVVTDEVKDTLLEIDINEAYTFNPTAKIGDVISIEVTPKKFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ + +I++G V+R + NVI+DLG ++ ++ E IS E G+R+K Y Sbjct: 122 ERDLIFEEYSGRETDIVTGIVQRFDKKNVIIDLGKTEAILPTGEQISSEEYVQGNRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+ +SR+HP + +LF +EVPEIY GIV++K ++R+ GSR K+AV+S + Sbjct: 182 ILEVKKTTKGPQITVSRSHPGLVKRLFELEVPEIYEGIVEIKGIAREAGSRTKIAVYSKN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +GSRVQ++V EL EKIDI+ W D A F+ NAL PA V V+++E+ Sbjct: 242 ENIDPVGACVGPKGSRVQSIVDELNGEKIDIIKWDKDVAEFISNALSPAKVLNVIVEENT 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V V + QLSLAIG+ GQN RLA++LTGW IDI +++ + Sbjct: 302 KTARVTVSESQLSLAIGKEGQNARLAARLTGWKIDIKSKDGN 343 >gi|291523276|emb|CBK81569.1| transcription termination factor NusA [Coprococcus catus GD/7] Length = 348 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 151/339 (44%), Positives = 226/339 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ D + EK I +D++L + +S+ A ++ YG +IRV +N ETG++ +F Sbjct: 6 ELIKALDDIEKEKGISKDILLEAIENSLVAACKNEYGKADNIRVTMNRETGEVKVFADKT 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +IS+ AR ++ D G +V + P +FGR+A Q AKQV++QK+RE ER Sbjct: 66 VVEEVEDPEMEISVADARLKNKFYDPGDIVHVEIVPKNFGRIAAQKAKQVVVQKIREEER 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ + +I++G V+R N+ V+LG D V+ +E + E +P DR+K YI Sbjct: 126 KSLYNEYYGREKDIVTGVVQRYNGKNISVNLGKVDAVLTENEQVKGEVFKPTDRIKLYIV 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP+V +SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV S++ + Sbjct: 186 EVKNTTKGPKVTVSRTHPELVKRLFEAEVTEVRDGTVEIKSIAREAGSRTKIAVSSNNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ WS D A + NAL PA V V +D + Sbjct: 246 VDPVGACVGMNGARVNAIVDELRGEKIDIINWSEDPAVLIENALSPAKVVSVDVDPEEKS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 306 AAVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQ 344 >gi|293570613|ref|ZP_06681664.1| transcription termination factor NusA [Enterococcus faecium E980] gi|291609284|gb|EFF38555.1| transcription termination factor NusA [Enterococcus faecium E980] Length = 391 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 153/402 (38%), Positives = 233/402 (57%), Gaps = 19/402 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEQQN 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 +E+ +V + F+ ET E Sbjct: 356 ETEELHDEAIVQSDLT----------DDEYETIAFNNETVEE 387 >gi|257887083|ref|ZP_05666736.1| transcription termination factor NusA [Enterococcus faecium 1,141,733] gi|257823137|gb|EEV50069.1| transcription termination factor NusA [Enterococcus faecium 1,141,733] Length = 391 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 153/391 (39%), Positives = 232/391 (59%), Gaps = 9/391 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEQQN 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 +E+ +V D E A +E Sbjct: 356 ETEELHDEAIVQSDLTDDEYEAIAFNNETVE 386 >gi|320354998|ref|YP_004196337.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032] gi|320123500|gb|ADW19046.1| NusA antitermination factor [Desulfobulbus propionicus DSM 2032] Length = 451 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 179/452 (39%), Positives = 281/452 (62%), Gaps = 16/452 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MV A L +I D + +K IDR +++ + ++++ A R YGT +I V+ N + G++ Sbjct: 1 MVGAEN--LKRIVDQICRDKGIDRALLIDAIEEAVRSAVRKKYGTRREIEVQFNEDLGEV 58 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVII 119 +F+ VV+EV + +ISL+ AR DP I++ + + + + D GR+A QSAKQVII Sbjct: 59 EVFQYRTVVDEVYDEETEISLEEARRLDPEIELDDDLGEKMDNIADLGRIAAQSAKQVII 118 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 ++R+AERD Y F+D+ G I++G V+R E G++I++LG +D V+ R+ I + + + G Sbjct: 119 HRMRDAERDVIYEMFRDREGTIVNGIVQRFERGDMIINLGRTDAVLPREGQIPKRSYKQG 178 Query: 180 DRVKSYIYDVRREQR-----GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 DR+++Y+ +VRR+ R Q++LSRT +F++KLF MEVPEI GIV++ SR+PG Sbjct: 179 DRIRAYLQEVRRDTREGKFRDSQLILSRTCNEFLIKLFEMEVPEIAEGIVKIMGASREPG 238 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 RAK+AV S +S +DPVGACVG++GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA Sbjct: 239 FRAKIAVSSIESDVDPVGACVGLKGSRVQNVVQELQGERIDIVPWSPDPARYVCNALAPA 298 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+ V+++++ + V+VP +QLSLAIGR+GQNVRLAS+L GW ID+ ++ + + Sbjct: 299 EVSMVIVEDERKALLVVVPDDQLSLAIGRQGQNVRLASRLLGWKIDVKSQSRYANMDNTE 358 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + VDE +A L A G LA + I ++ ++ D++ A +Q A Sbjct: 359 YRSLLAVD----GVDENLADRLFAAGITSAPLLAAMDIEQLMALARIDQDKAQGMQKAAA 414 Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 + + +K + +EL + + Sbjct: 415 A----MQPSKEKTAQPAPDVQELTDQEPVTPQ 442 >gi|258591348|emb|CBE67647.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [NC10 bacterium 'Dutch sediment'] Length = 433 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 172/431 (39%), Positives = 258/431 (59%), Gaps = 14/431 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++LLQ+ + V EK ID V++ ++ +I A+R G D+RVE + + L+ + Sbjct: 3 IDLLQVIEQVGREKEIDSAVLIEAVSAAILSASRKTLGAALDLRVEFDQRSRCFMLYAVR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE+V N +I++ A+ +P +G L +FGR+A Q+AKQVIIQ+V+EAE Sbjct: 63 KVVEQVVNPHVEIAIDEAQQLNPEAQLGDETKTELKAKEFGRIAAQTAKQVIIQRVKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + FK +VGE++ G V+RV GNVIV+LG ++ ++ E + RE+ R GDR+++Y+ Sbjct: 123 RESVFQAFKARVGELVGGVVQRVAKGNVIVNLGKAEAILPPREQLPREDYRVGDRIRAYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DV++ RG Q++LSRTHP + KL +EVPEIY GIV++KAVSRD G RAK+AV S DS Sbjct: 183 LDVKKLPRGSQIVLSRTHPGLLAKLLEIEVPEIYEGIVEIKAVSRDAGERAKVAVASRDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG RGSR+QA+V EL EKID++ W D A+FV +AL PA + V + ++ Sbjct: 243 NVDPVGACVGYRGSRIQAIVRELMGEKIDVIAWKDDPASFVKSALAPADIESVEVVQETH 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+V QLSLAIG+RGQN RLA++L GW +D+ E ++ + + Sbjct: 303 TLHVLVADGQLSLAIGKRGQNARLAAKLLGWKVDVRGRGEIQKASEERLQPEFEPVASTV 362 Query: 367 --------------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 V E +A L+ G +LA + +EG +TA ++ Sbjct: 363 EGRAGTDLRLAEVPGVGEKLADRLIEAGVDSCRKLADASDEALVQVEGIGPKTAQKLIEA 422 Query: 413 AREYLEGIDIT 423 A+ L D Sbjct: 423 AKAALALRDAE 433 >gi|256618850|ref|ZP_05475696.1| transcription termination factor NusA [Enterococcus faecalis ATCC 4200] gi|256598377|gb|EEU17553.1| transcription termination factor NusA [Enterococcus faecalis ATCC 4200] Length = 399 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 149/377 (39%), Positives = 229/377 (60%), Gaps = 7/377 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSKYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ Q + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQ------QANQEVA 357 Query: 367 NVDEIIAHLLVAEGFAD 383 V E + ++ Sbjct: 358 EVAEEMDEAIIHSDMTA 374 >gi|255976057|ref|ZP_05426643.1| transcription termination factor NusA [Enterococcus faecalis T2] gi|307279086|ref|ZP_07560144.1| transcription termination factor NusA [Enterococcus faecalis TX0860] gi|255968929|gb|EET99551.1| transcription termination factor NusA [Enterococcus faecalis T2] gi|306504211|gb|EFM73423.1| transcription termination factor NusA [Enterococcus faecalis TX0860] Length = 399 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 151/397 (38%), Positives = 235/397 (59%), Gaps = 7/397 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ Q + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQ------QANQEVA 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 V E + ++ + + E +E Sbjct: 358 EVAEEMDEAIIHSDMTADDYENLATEEAVVEAEITEE 394 >gi|313896800|ref|ZP_07830348.1| transcription termination factor NusA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974717|gb|EFR40184.1| transcription termination factor NusA [Selenomonas sp. oral taxon 137 str. F0430] Length = 379 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 153/354 (43%), Positives = 226/354 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAER Sbjct: 74 VVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI Sbjct: 134 GIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYII 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPE+ GIV++KA++R+ GSR+K+AV S++ Sbjct: 194 EVKRSPRGPQIMLSRTHPGLLKKLFELQVPEMQEGIVEIKAIAREAGSRSKVAVHSTEER 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E Sbjct: 254 VDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEKL 313 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + E Sbjct: 314 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAAQEENGGVPEPVDD 367 >gi|257085469|ref|ZP_05579830.1| transcription termination factor NusA [Enterococcus faecalis Fly1] gi|256993499|gb|EEU80801.1| transcription termination factor NusA [Enterococcus faecalis Fly1] Length = 403 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 148/369 (40%), Positives = 231/369 (62%), Gaps = 1/369 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363 Query: 367 NVDEIIAHL 375 + I + + Sbjct: 364 DEAIIHSDM 372 >gi|29375840|ref|NP_814994.1| transcription elongation factor NusA [Enterococcus faecalis V583] gi|227518531|ref|ZP_03948580.1| transcription elongation factor NusA [Enterococcus faecalis TX0104] gi|227553057|ref|ZP_03983106.1| transcription elongation factor NusA [Enterococcus faecalis HH22] gi|229546052|ref|ZP_04434777.1| transcription elongation factor NusA [Enterococcus faecalis TX1322] gi|229550242|ref|ZP_04438967.1| transcription elongation factor NusA [Enterococcus faecalis ATCC 29200] gi|255973018|ref|ZP_05423604.1| transcription termination factor NusA [Enterococcus faecalis T1] gi|256762268|ref|ZP_05502848.1| transcription termination factor NusA [Enterococcus faecalis T3] gi|256852913|ref|ZP_05558283.1| transcription elongation factor NusA [Enterococcus faecalis T8] gi|256958759|ref|ZP_05562930.1| transcription termination factor NusA [Enterococcus faecalis DS5] gi|256962135|ref|ZP_05566306.1| transcription termination factor NusA [Enterococcus faecalis Merz96] gi|256965334|ref|ZP_05569505.1| transcription termination factor NusA [Enterococcus faecalis HIP11704] gi|257078788|ref|ZP_05573149.1| transcription termination factor NusA [Enterococcus faecalis JH1] gi|257082768|ref|ZP_05577129.1| transcription termination factor NusA [Enterococcus faecalis E1Sol] gi|257086618|ref|ZP_05580979.1| transcription termination factor NusA [Enterococcus faecalis D6] gi|257089675|ref|ZP_05584036.1| transcriptional termination factor nusA [Enterococcus faecalis CH188] gi|257415889|ref|ZP_05592883.1| transcription termination factor NusA [Enterococcus faecalis AR01/DG] gi|257419091|ref|ZP_05596085.1| transcription termination factor nusA [Enterococcus faecalis T11] gi|257422841|ref|ZP_05599831.1| transcription elongation factor nusA [Enterococcus faecalis X98] gi|293383160|ref|ZP_06629077.1| transcription termination factor NusA [Enterococcus faecalis R712] gi|293387686|ref|ZP_06632231.1| transcription termination factor NusA [Enterococcus faecalis S613] gi|294780121|ref|ZP_06745494.1| transcription termination factor NusA [Enterococcus faecalis PC1.1] gi|300859670|ref|ZP_07105758.1| transcription termination factor NusA [Enterococcus faecalis TUSoD Ef11] gi|307268540|ref|ZP_07549913.1| transcription termination factor NusA [Enterococcus faecalis TX4248] gi|307273441|ref|ZP_07554686.1| transcription termination factor NusA [Enterococcus faecalis TX0855] gi|307277604|ref|ZP_07558696.1| transcription termination factor NusA [Enterococcus faecalis TX2134] gi|307288429|ref|ZP_07568417.1| transcription termination factor NusA [Enterococcus faecalis TX0109] gi|307291252|ref|ZP_07571136.1| transcription termination factor NusA [Enterococcus faecalis TX0411] gi|312899340|ref|ZP_07758673.1| transcription termination factor NusA [Enterococcus faecalis TX0470] gi|312904021|ref|ZP_07763189.1| transcription termination factor NusA [Enterococcus faecalis TX0635] gi|312907251|ref|ZP_07766242.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 512] gi|312909869|ref|ZP_07768717.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 516] gi|312952268|ref|ZP_07771143.1| transcription termination factor NusA [Enterococcus faecalis TX0102] gi|29343302|gb|AAO81064.1| N utilization substance protein A [Enterococcus faecalis V583] gi|227074013|gb|EEI11976.1| transcription elongation factor NusA [Enterococcus faecalis TX0104] gi|227177800|gb|EEI58772.1| transcription elongation factor NusA [Enterococcus faecalis HH22] gi|229304680|gb|EEN70676.1| transcription elongation factor NusA [Enterococcus faecalis ATCC 29200] gi|229308825|gb|EEN74812.1| transcription elongation factor NusA [Enterococcus faecalis TX1322] gi|255964036|gb|EET96512.1| transcription termination factor NusA [Enterococcus faecalis T1] gi|256683519|gb|EEU23214.1| transcription termination factor NusA [Enterococcus faecalis T3] gi|256711372|gb|EEU26410.1| transcription elongation factor NusA [Enterococcus faecalis T8] gi|256949255|gb|EEU65887.1| transcription termination factor NusA [Enterococcus faecalis DS5] gi|256952631|gb|EEU69263.1| transcription termination factor NusA [Enterococcus faecalis Merz96] gi|256955830|gb|EEU72462.1| transcription termination factor NusA [Enterococcus faecalis HIP11704] gi|256986818|gb|EEU74120.1| transcription termination factor NusA [Enterococcus faecalis JH1] gi|256990798|gb|EEU78100.1| transcription termination factor NusA [Enterococcus faecalis E1Sol] gi|256994648|gb|EEU81950.1| transcription termination factor NusA [Enterococcus faecalis D6] gi|256998487|gb|EEU85007.1| transcriptional termination factor nusA [Enterococcus faecalis CH188] gi|257157717|gb|EEU87677.1| transcription termination factor NusA [Enterococcus faecalis ARO1/DG] gi|257160919|gb|EEU90879.1| transcription termination factor nusA [Enterococcus faecalis T11] gi|257164665|gb|EEU94625.1| transcription elongation factor nusA [Enterococcus faecalis X98] gi|291079499|gb|EFE16863.1| transcription termination factor NusA [Enterococcus faecalis R712] gi|291082875|gb|EFE19838.1| transcription termination factor NusA [Enterococcus faecalis S613] gi|294452796|gb|EFG21225.1| transcription termination factor NusA [Enterococcus faecalis PC1.1] gi|295112810|emb|CBL31447.1| transcription termination factor NusA [Enterococcus sp. 7L76] gi|300850488|gb|EFK78237.1| transcription termination factor NusA [Enterococcus faecalis TUSoD Ef11] gi|306497483|gb|EFM67016.1| transcription termination factor NusA [Enterococcus faecalis TX0411] gi|306500600|gb|EFM69929.1| transcription termination factor NusA [Enterococcus faecalis TX0109] gi|306505869|gb|EFM75047.1| transcription termination factor NusA [Enterococcus faecalis TX2134] gi|306509968|gb|EFM78993.1| transcription termination factor NusA [Enterococcus faecalis TX0855] gi|306515136|gb|EFM83678.1| transcription termination factor NusA [Enterococcus faecalis TX4248] gi|310626279|gb|EFQ09562.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 512] gi|310629652|gb|EFQ12935.1| transcription termination factor NusA [Enterococcus faecalis TX0102] gi|310632497|gb|EFQ15780.1| transcription termination factor NusA [Enterococcus faecalis TX0635] gi|311289827|gb|EFQ68383.1| transcription termination factor NusA [Enterococcus faecalis DAPTO 516] gi|311293491|gb|EFQ72047.1| transcription termination factor NusA [Enterococcus faecalis TX0470] gi|315027493|gb|EFT39425.1| transcription termination factor NusA [Enterococcus faecalis TX2137] gi|315030928|gb|EFT42860.1| transcription termination factor NusA [Enterococcus faecalis TX4000] gi|315034084|gb|EFT46016.1| transcription termination factor NusA [Enterococcus faecalis TX0017] gi|315036752|gb|EFT48684.1| transcription termination factor NusA [Enterococcus faecalis TX0027] gi|315145578|gb|EFT89594.1| transcription termination factor NusA [Enterococcus faecalis TX2141] gi|315147751|gb|EFT91767.1| transcription termination factor NusA [Enterococcus faecalis TX4244] gi|315151452|gb|EFT95468.1| transcription termination factor NusA [Enterococcus faecalis TX0012] gi|315153231|gb|EFT97247.1| transcription termination factor NusA [Enterococcus faecalis TX0031] gi|315155990|gb|EFU00007.1| transcription termination factor NusA [Enterococcus faecalis TX0043] gi|315157838|gb|EFU01855.1| transcription termination factor NusA [Enterococcus faecalis TX0312] gi|315160336|gb|EFU04353.1| transcription termination factor NusA [Enterococcus faecalis TX0645] gi|315165485|gb|EFU09502.1| transcription termination factor NusA [Enterococcus faecalis TX1302] gi|315166759|gb|EFU10776.1| transcription termination factor NusA [Enterococcus faecalis TX1341] gi|315169950|gb|EFU13967.1| transcription termination factor NusA [Enterococcus faecalis TX1342] gi|315575674|gb|EFU87865.1| transcription termination factor NusA [Enterococcus faecalis TX0309B] gi|315578368|gb|EFU90559.1| transcription termination factor NusA [Enterococcus faecalis TX0630] gi|315579882|gb|EFU92073.1| transcription termination factor NusA [Enterococcus faecalis TX0309A] gi|323480502|gb|ADX79941.1| transcription elongation protein nusA [Enterococcus faecalis 62] gi|327534893|gb|AEA93727.1| transcription termination factor NusA [Enterococcus faecalis OG1RF] Length = 399 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 148/369 (40%), Positives = 231/369 (62%), Gaps = 1/369 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L D + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALDVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363 Query: 367 NVDEIIAHL 375 + I + + Sbjct: 364 DEAIIHSDM 372 >gi|256830179|ref|YP_003158907.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256579355|gb|ACU90491.1| NusA antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 441 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 160/405 (39%), Positives = 261/405 (64%), Gaps = 5/405 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K IDR++++ + ++I+ + YG DI V N ETG+I +++ Sbjct: 2 NLELKKAIDQISKDKGIDREMLIDTLEEAIRASVTKKYGDKMDIEVTFNEETGEIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEE+E+ +I + A DP++++ + L D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVEEIEDPDTEILMVDALKHDPNVELDDAIGFRLQVEDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ + E+K++ GEI+SG ++R + I++LG ++ ++ +D+ I RE R GDRV+ Sbjct: 122 EQEIIFEEYKNRKGEIVSGIIQRRDRSGWIINLGRTEALLPKDKQIPRERFRQGDRVEGL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR+E RGPQ++++R+ P++M LF EVPE+ +G V + V+RDPG RAK+ V S D Sbjct: 182 IIEVRKEGRGPQIIITRSDPEYMTALFRREVPEVADGTVNIMGVARDPGLRAKVTVLSQD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG+RGSR+ ++V ELR E+IDIV+WSPD AT+ NAL PA ++K+ +D++ Sbjct: 242 SNVDPVGACVGIRGSRIHSIVQELRGERIDIVLWSPDIATYAANALSPARISKIAIDDEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV+VP++QL+ AIG++GQNV+LA++L GW IDI T + + Sbjct: 302 KSLEVVVPEDQLTPAIGKKGQNVKLAAKLLGWKIDIFTNTRFNKVHKDRHLLEQLASAAQ 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 +++ + GF +E +A ++ I+G EE ++ Sbjct: 362 VSIAD-----FAEAGFDSLEAMAACTNEQLLDIQGISEENIGALR 401 >gi|292669518|ref|ZP_06602944.1| transcription termination factor NusA [Selenomonas noxia ATCC 43541] gi|292648841|gb|EFF66813.1| transcription termination factor NusA [Selenomonas noxia ATCC 43541] Length = 377 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 158/363 (43%), Positives = 232/363 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE EN ISL AR +P +G V+ + P +FGR+A Q+AKQV++Q++REAER Sbjct: 74 VVEEAENDITDISLAQARAINPDYAVGDVIEIEMTPANFGRIAAQTAKQVVMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ ++ +I++G V+RVE NV VD+G ++ V+ E + E GD +++YI Sbjct: 134 GIVYEEYMNRSADIVTGIVQRVEGRNVFVDIGRAEAVLMATEQMPTETYNYGDTLRAYII 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPE+ G+V++K+++R+ GSR+K+AV SS+ Sbjct: 194 EVKRTSRGPQIMLSRTHPGLLKKLFELQVPEMQEGVVEIKSIAREAGSRSKIAVASSEER 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V ++E Sbjct: 254 VDPIGACVGPHYMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVNEAEKV 313 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + E A+ Sbjct: 314 SRVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAQELESGSEEEADMPVAPALT 373 Query: 368 VDE 370 +E Sbjct: 374 AEE 376 >gi|320530108|ref|ZP_08031178.1| transcription termination factor NusA [Selenomonas artemidis F0399] gi|320137541|gb|EFW29453.1| transcription termination factor NusA [Selenomonas artemidis F0399] Length = 379 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 154/354 (43%), Positives = 226/354 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E LQ +AYEK ID +++ + ++ A R +G+ ++R+ ++ ETG +F + Sbjct: 14 EFLQTLKELAYEKGIDEELLFETIEAALISAYRRNFGSAQNVRIALSRETGAFHVFAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE E+ ISL A +P +G VV + P +FGR+A Q+AKQV++Q++REAER Sbjct: 74 VVEEAESGVTDISLAQAHAINPDYQVGDVVEIEMTPANFGRIAAQTAKQVVMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y + ++ +I++G V+R+E +V VD+G ++ V+ E I E GD +++YI Sbjct: 134 GIVYEAYMNRSADIVTGIVQRIEGRSVYVDIGKAEAVLMPTEQIPGETYNYGDTIRAYII 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R RGPQ++LSRTHP + KLF ++VPEI GIV++KA++R+ GSR+K+AV S++ Sbjct: 194 EVKRSPRGPQIMLSRTHPGLLKKLFELQVPEIQEGIVEIKAIAREAGSRSKVAVHSTEER 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+GACVG RVQAVV EL EKIDIV WS D AT++ N+L PA V V + E Sbjct: 254 VDPIGACVGPHFMRVQAVVDELAGEKIDIVKWSEDPATYIANSLNPAKVISVAVSETEKL 313 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + E Sbjct: 314 SRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAAQEENGGVPEPVDD 367 >gi|315174358|gb|EFU18375.1| transcription termination factor NusA [Enterococcus faecalis TX1346] Length = 399 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 147/369 (39%), Positives = 231/369 (62%), Gaps = 1/369 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + EK I +D V+ + ++ A + YG S++ VE P+ G+I ++ + E Sbjct: 4 EMLNALEVLEAEKGIPKDTVIEALQAALVSAYKRHYGQASNVEVEFEPKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVFDSQLEVSLKDAVALNGAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +V+R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSVAREAGDRSKVAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D A ++ NAL PA V V+ D + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIYISNALNPAQVLDVIFDPENSK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ N+ + + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEQQANQEVAEVAEEM 363 Query: 367 NVDEIIAHL 375 + I + + Sbjct: 364 DEAIIHSDM 372 >gi|297584078|ref|YP_003699858.1| NusA antitermination factor [Bacillus selenitireducens MLS10] gi|297142535|gb|ADH99292.1| NusA antitermination factor [Bacillus selenitireducens MLS10] Length = 396 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 149/373 (39%), Positives = 233/373 (62%), Gaps = 1/373 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + ++ +K ID++++L + ++ + + + ++RV+I+ E+G I +F Sbjct: 2 NSEFMDALASIEKDKGIDKEIILEAIEQALITGYKRNFNSAQNVRVDIDRESGQIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +IS + A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KTVVEEVFDARLEISQEEAKGINPHYEVDDIVEIEVTPRDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ +E + E R DR+K++ Sbjct: 122 ERGIIYSDFIDREEDIMTGIVQRQDHRFIYVDLGKVEALMPLNEQMPNETYRHNDRIKAF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SR+HP + +LF +EVPEIY+G V+VK+VSR+ G R+K++V + D Sbjct: 182 ITKVEKTTKGPQIMISRSHPGLLKRLFELEVPEIYDGTVEVKSVSREAGERSKISVHAED 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG RG RVQ +V EL+ EKIDIV WS D +V NAL P+ V V+++E+ Sbjct: 242 EDIDPVGSCVGQRGQRVQTIVDELKGEKIDIVRWSEDPKVYVSNALSPSKVVDVLVNEEQ 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E + + + F Sbjct: 302 KMTTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAEESGIYPVADNDEPF-DD 360 Query: 366 INVDEIIAHLLVA 378 DE + Sbjct: 361 EETDEDLPQSFAE 373 >gi|326803576|ref|YP_004321394.1| transcription termination factor NusA [Aerococcus urinae ACS-120-V-Col10a] gi|326651243|gb|AEA01426.1| transcription termination factor NusA [Aerococcus urinae ACS-120-V-Col10a] Length = 455 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 152/437 (34%), Positives = 247/437 (56%), Gaps = 2/437 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+Q + + EK I +D ++ + ++ A + + ++ V + + G ++ + EV Sbjct: 5 LIQAFEMLEQEKGISKDTIIDAVQSALVFAYKRNFDQAQNVEVVFDDKKGSFHVYSVKEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI Q++REAER+ Sbjct: 65 VETVMDSNLEVSLEDALEINRGYEIGDKIRCEVTPEDFGRIAAQTAKQVITQRLREAERE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EF D ++++GTV+R + + V+LG + V+ + I E +P DR++ Y+ Sbjct: 125 IIYEEFIDYEDDLLTGTVERQDRRYIYVNLGKIEAVLTPEGQIPGEYFQPHDRIQVYVER 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +GPQ+ +SRTHP + +LF EVPEIY+G V++++++R+ G R+KLAV+S+D ++ Sbjct: 185 VENTTKGPQIYVSRTHPNMLKRLFEQEVPEIYDGTVEIRSIAREAGDRSKLAVYSNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVG CVG RGSRVQ VV EL+ E +DI+ W D A + NAL PA V V + Sbjct: 245 DPVGTCVGPRGSRVQTVVNELKGENMDIIEWDEDPAVLIANALNPADVLAVHFVPNEQAC 304 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V+VP LSLAIG+RGQN RLA++LTG+ IDI +E E + + + T Q + Sbjct: 305 VVVVPDNHLSLAIGKRGQNARLAAKLTGYKIDIKSETEYEDYQDSEEYKETFLQDQNLEA 364 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 + L+ + +VEE + +AS EET + + + G + ++ I Sbjct: 365 ESEEVESLLND--VNVEEELMSDPAALASDSLVSEETDPLLSEVSADDQAGFENYDEENI 422 Query: 429 RELGVSEELCSIPGIDS 445 + E + + D Sbjct: 423 HPDDMEEIVSDVEESDE 439 >gi|328957408|ref|YP_004374794.1| transcription elongation factor NusA [Carnobacterium sp. 17-4] gi|328673732|gb|AEB29778.1| transcription elongation factor NusA [Carnobacterium sp. 17-4] Length = 425 Score = 356 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 148/396 (37%), Positives = 233/396 (58%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + E Sbjct: 4 EMLNALEALEQEKGISKEFVIEALEVALVSAYKRNYDQAQNVEVEFDLKKGNIHVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + ++ ++ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDVVYDSRLEVGIEEALEINKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y+ Sbjct: 124 NIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + Sbjct: 184 KVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSREEH 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E G Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNESNGS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + + + Sbjct: 304 CLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMEAINLAKEETGLEKDAKYAE 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 V E I + ++ E SE I D+ Sbjct: 364 VIETIENQEQEMNEEEIIESVEDLDSEFDEITIADD 399 >gi|223936317|ref|ZP_03628229.1| NusA antitermination factor [bacterium Ellin514] gi|223894835|gb|EEF61284.1| NusA antitermination factor [bacterium Ellin514] Length = 425 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 152/399 (38%), Positives = 242/399 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L + + EK I R V++S + +S+ AA+ G ++R I+P++GDI F Sbjct: 2 NADFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFAK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L V E+V + ISL A+ P +G V + P FGR+A Q AKQ ++Q +R A Sbjct: 62 LIVSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRRA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ + EFKD+VG+IISG V+R + +V VDLG + ++ E + E + G+R++ Y Sbjct: 122 EKQLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKYEALLPNRERVPTEEYQIGERIRCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V GP+++LSR P+F++KLF +EV EI +G +++K ++R+PG R KLAV++ D Sbjct: 182 VKAVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYTRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RG RV+ +V EL +EK+DI+ W P+ F+ NAL PA + +DE Sbjct: 242 EKVDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDEAN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R++++V ++QLSLAIG+RGQN RL+S+LTGW +DI E + ++ E + Sbjct: 302 KRVKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLAAI 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + + A LV +G +E+L IS+++ I ++ Sbjct: 362 PGITQEQADTLVHQGLTRLEDLLQADISDLSGIPQIGDQ 400 >gi|254995056|ref|ZP_05277246.1| transcription elongation factor NusA [Anaplasma marginale str. Mississippi] Length = 512 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 203/522 (38%), Positives = 319/522 (61%), Gaps = 31/522 (5%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + LEL+++A VA +K ++ ++V+ + +++ +RS YG I+ I+ +TG +S+ R Sbjct: 8 DNLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVVSISR 66 Query: 65 LLEVVEEVENYTCQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 VV + ++ + + + A + +G ++ +PLPP+D + Sbjct: 67 QALVVNDDMSFDSEQYGIPLGEVSKYKLVKVSDAVADGKDVKVGDILFEPLPPVDVDYNS 126 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDET 170 + A++ + Q + ER RQY EFKD+VG+++ G VKRVEY NV+VDL S+G + T Sbjct: 127 AKVARRKVAQLIMIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDLNGSEGYLPVYNT 186 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 I E RP DRVK + E GPQ+ LSR +FM LF E+PE+Y+GIV +KA++ Sbjct: 187 IRGEVFRPNDRVKDVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKALA 246 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 RDPGSR+K+AVFSSD ++DPVGAC+G RG R+Q +V+ELR E VV+ V + Sbjct: 247 RDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELRGEDRRCVVF-IRPRE-VCSE 304 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 A V KV++DEDV +IE++VP+ Q+SLAIGR GQN+RLAS+L GW ID+I +E +S Sbjct: 305 RDSAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETESTR 364 Query: 351 RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + K+ + + F+ ++V+EII LLV+EGF+ +E+L V ++EI +I+GF+EE AVE++ Sbjct: 365 KAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVELK 424 Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDL 470 RA EYL + ++ + VSEE+ +P ++ + V L E GI+++ED+A D+ Sbjct: 425 KRAAEYLTRRREEALETLKNMSVSEEVLELPYLEIEDVVKLCEGGIRSVEDIASMCTDEF 484 Query: 471 LGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 + K+QV+S+I+ +R +MGWI Sbjct: 485 YDM--------------VPKARLSKEQVDSIILESRKRMGWI 512 >gi|257869192|ref|ZP_05648845.1| transcription termination factor NusA [Enterococcus gallinarum EG2] gi|257803356|gb|EEV32178.1| transcription termination factor NusA [Enterococcus gallinarum EG2] Length = 398 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 149/394 (37%), Positives = 231/394 (58%), Gaps = 1/394 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 TIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 +DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA VT V+ D D Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNDDPAVFIANALNPAEVTDVIFDVDNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K +A+ Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSESDMEEFYAKLEEGAYIDEGEAV 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 E + + E + Sbjct: 364 ESQESTIEDNESHDEMIIASDMTADDYENMDFDE 397 >gi|299823034|ref|ZP_07054920.1| transcription termination factor NusA [Listeria grayi DSM 20601] gi|299816563|gb|EFI83801.1| transcription termination factor NusA [Listeria grayi DSM 20601] Length = 367 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 226/338 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + +K I R+V++ + ++ A + + ++RV++N E G I + + Sbjct: 4 ELMEALYVLENDKGISREVLVDAIEAALVSAYKRNFDKAENVRVDLNMENGSIRVLARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + +IS + A+ +P ++G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDQVFDSRLEISPEEAQKINPVYNVGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E R DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYRAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY G V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYEGSVEIKSVAREAGDRSKISVYTANKE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVG +G+RVQA+V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 IDPVGACVGPKGARVQAIVDELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|42523053|ref|NP_968433.1| transcription elongation factor NusA [Bdellovibrio bacteriovorus HD100] gi|39575258|emb|CAE79426.1| N utilization substance protein A [Bdellovibrio bacteriovorus HD100] Length = 462 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 173/419 (41%), Positives = 263/419 (62%), Gaps = 7/419 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L ++ D V +K ID+ VV+ + + AAR YGT +I N +TG++ LF E Sbjct: 8 DLSKVIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFKE 67 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ + +I L A+ DP++ + + + D GR+A Q+AKQ+I+QKVR+A Sbjct: 68 VVPREKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRDA 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GEI SG +RVE G ++VDLG ++ I E I E +PGDR++ Y Sbjct: 128 ERNIIFNEFEERKGEIASGIARRVEKGAIVVDLGRTEAYIPPREQIPGEQYKPGDRIQGY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ RGPQ+++SR ++++KLF MEVPEIY+G+V++ A +R+PG RAK+AV S D Sbjct: 188 LSEVRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRSKD 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +S+DPVGACVGM+GSRVQ +V ELR EKIDIV W D F NAL PA +++V LD+ Sbjct: 248 NSVDPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDDAN 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +E++VP QLSLAIG+RGQNVRLA++LT W +DII+E + + M Sbjct: 308 REMEIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIISESSAASRTAESIFN----LMLI 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE-ETAVEIQGRAREYLEGIDIT 423 + E +A + GF + +A + E+ +I G+D+ + A ++ A+ + + Sbjct: 364 PGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAEKLSKEAKGLVAKYESE 422 >gi|257898238|ref|ZP_05677891.1| transcription termination factor NusA [Enterococcus faecium Com15] gi|257836150|gb|EEV61224.1| transcription termination factor NusA [Enterococcus faecium Com15] Length = 391 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 153/391 (39%), Positives = 231/391 (59%), Gaps = 9/391 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQIKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ +++R+ G R+K+AV S+D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEIVSIAREAGDRSKVAVRSNDQN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 ID VG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V V+ DE Sbjct: 244 IDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAVFIANALNPAQVMDVIFDETNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LT IDI +E + + E + Q Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKSESDMA--------EFYEKQEQQN 355 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 +E+ +V D E A +E Sbjct: 356 ETEELHDEAIVQSDLTDDEYEAIAFNNETVE 386 >gi|257865909|ref|ZP_05645562.1| transcription termination factor NusA [Enterococcus casseliflavus EC30] gi|257872242|ref|ZP_05651895.1| transcription termination factor NusA [Enterococcus casseliflavus EC10] gi|257799843|gb|EEV28895.1| transcription termination factor NusA [Enterococcus casseliflavus EC30] gi|257806406|gb|EEV35228.1| transcription termination factor NusA [Enterococcus casseliflavus EC10] Length = 404 Score = 355 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 153/398 (38%), Positives = 236/398 (59%), Gaps = 7/398 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 +DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSDVIFDVDNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K A Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAKLDEGDYIDEYDAT 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + E +V E A I S + ++ Sbjct: 364 ASEA------ADESSTEVTESAETVDEAILSSDMTADD 395 >gi|296330875|ref|ZP_06873350.1| transcription elongation factor NusA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674393|ref|YP_003866065.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. spizizenii str. W23] gi|296151880|gb|EFG92754.1| transcription elongation factor NusA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412637|gb|ADM37756.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. spizizenii str. W23] Length = 372 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 150/364 (41%), Positives = 228/364 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPRELEEEDDEPLFT 363 Query: 368 VDEI 371 E Sbjct: 364 EPET 367 >gi|221632782|ref|YP_002522004.1| transcription termination factor NusA [Thermomicrobium roseum DSM 5159] gi|221155810|gb|ACM04937.1| transcription termination factor NusA [Thermomicrobium roseum DSM 5159] Length = 439 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 150/346 (43%), Positives = 224/346 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + +L VA E+ I R+ V+ + +++ + G+ ++ +EI+ TG I +F Sbjct: 2 KSDLYTAIAQVAAERGIPREAVMESVQQALRTVYKKATGSDEEVEIEIDVNTGKIRIFAP 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V + +IS++ AR DP +G +V P +FGR+A Q+AKQVI+Q++R+ Sbjct: 62 KRVVEKVNDPLSEISIEEARKIDPRAIVGDIVRIERQPSNFGRIAAQTAKQVILQRIRDF 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF D+VGE+++GTV+RV+ VI+ G ++ ++ E I E RPG R+K Y Sbjct: 122 ERDTIYNEFIDRVGEVLTGTVQRVDARAVILSFGKAEAILPAREQIPGERYRPGQRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV ++ +GPQ+L+SRTHP + +L +EVPE+ +G V+V A++R+PG R+K+AV + Sbjct: 182 LVDVTKDAKGPQLLVSRTHPNLIKRLLELEVPEVASGAVEVMAIAREPGQRSKVAVAARQ 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RG R+Q++VTEL EKID++ WS D TF+ NAL PA V+L+ED Sbjct: 242 DKVDPVGACVGVRGVRIQSIVTELSGEKIDVIEWSSDIRTFIANALSPAKPITVILNEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP EQ+S AIG+ GQN RLA +LTGW IDI E Sbjct: 302 KVARVVVPPEQMSQAIGKDGQNARLAYKLTGWRIDIKDPESLKGEE 347 >gi|81428862|ref|YP_395862.1| transcription elongation factor NusA [Lactobacillus sakei subsp. sakei 23K] gi|78610504|emb|CAI55555.1| Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) [Lactobacillus sakei subsp. sakei 23K] Length = 405 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 145/402 (36%), Positives = 223/402 (55%), Gaps = 1/402 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK + +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLGALDALEQEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++S + A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSYQDALEINKAYEVGDTIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ + + I E DR+K Y+ Sbjct: 124 SIIYNEYSQYENEIMQGIVERRDNKFIYVNLGKIEAVLSKQDQIPNEVYNAHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 KVENTTKGPQVFVSRTHPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVRSTDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306 +DPVG CVG +G RVQ VV EL E +DIV W D + ++ NAL PA V V ++ + Sbjct: 244 VDPVGTCVGPKGQRVQLVVNELHGENMDIVKWEEDPSDYIANALNPAEVIAVQFNDGNEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E D + + Sbjct: 304 TCTVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDGDDSEDESAVVEGFE 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 A I + A EE E Sbjct: 364 EETITPETTEETVAVAPETAEVAEDIEQPAETVVDSEEQPQE 405 >gi|315282175|ref|ZP_07870640.1| transcription termination factor NusA [Listeria marthii FSL S4-120] gi|313614179|gb|EFR87858.1| transcription termination factor NusA [Listeria marthii FSL S4-120] Length = 372 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSDDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|325569920|ref|ZP_08145914.1| transcription elongation factor NusA [Enterococcus casseliflavus ATCC 12755] gi|325157043|gb|EGC69211.1| transcription elongation factor NusA [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 151/391 (38%), Positives = 233/391 (59%), Gaps = 1/391 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 +DPVG CVG +G RVQA+V EL+ E +DIV W+ D A F+ NAL PA V+ V+ D D Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPAIFIANALNPAEVSNVIFDVDNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K A Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAKLDEGDYIDEYDAN 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + A A+ + A + A Sbjct: 364 ASEAAEEISTEATESAETVDEAILPSDMTAD 394 >gi|260583738|ref|ZP_05851486.1| transcription termination factor NusA [Granulicatella elegans ATCC 700633] gi|260158364|gb|EEW93432.1| transcription termination factor NusA [Granulicatella elegans ATCC 700633] Length = 369 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 137/343 (39%), Positives = 213/343 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + EK I ++VV++ + ++ A + YG ++ VE + + G + ++ + E Sbjct: 4 EMIKALNILEEEKGISKEVVITALEAALVSAYKKNYGQAQNVEVEFDAKKGKMHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + T ++S+ A + + ++G + + P DFGR+A Q+AKQVI+Q++R+AER Sbjct: 64 VVEYVFDSTLEVSIDEAHELHKAYEVGDKIRFEVTPKDFGRIAAQTAKQVIMQRLRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + EI++G V R ++ V V+LG + + + I E P R+K + Sbjct: 124 TNIYNEFIEYENEIMTGVVDRQDFRYVYVNLGKIVAGMTKQDQIPTEEYLPDQRIKVLVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GP + +SRTHP + +LF EVPEIY G+V++ +++R+ G RAK+AV S D++ Sbjct: 184 KVDNTTKGPLIFVSRTHPDLLKRLFEQEVPEIYEGVVEIVSIAREAGDRAKVAVRSRDTN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG RG RVQ +V EL E +DIV W+ D + ++ NAL PA V KV D D Sbjct: 244 LDPVGTCVGPRGQRVQNIVNELNGENMDIVEWNEDPSVYIANALNPAQVVKVDFDSDRNS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E Sbjct: 304 CIVVVPDHQLSLAIGKRGQNARLAAKLTGFRIDIKSESAYQEY 346 >gi|56963996|ref|YP_175727.1| transcription elongation factor NusA [Bacillus clausii KSM-K16] gi|56910239|dbj|BAD64766.1| transcriptional elongation protein [Bacillus clausii KSM-K16] Length = 368 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 150/367 (40%), Positives = 224/367 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + +K I ++V++ + ++ + +G ++RV++N + G I +F Sbjct: 2 NSEFMEALSTLEADKGIKKEVIIEAIEAALISGYKRNFGQAQNVRVDVNRDNGSIRVFAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +IS A+ +P ++ +V + P DFGR+A Q+AKQV+ Q+VREA Sbjct: 62 KVVVEEVFDKRLEISEAEAQRINPHYEVDDIVEIEVTPKDFGRIAAQTAKQVVTQRVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y +F D+ +I++G V+R ++ + VDLG + ++ E + E + DR+K+Y Sbjct: 122 ERGIIYSDFIDREEDIMNGIVQRQDHRFIYVDLGKVEALLPLSEQMPNETYKHNDRIKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+L+SRTHP + +LF +EVPEIY+G V++K+VSR+ G R+K+AV S + Sbjct: 182 ITKVEKTTKGPQILISRTHPGLLKRLFELEVPEIYDGTVEIKSVSREAGDRSKIAVHSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG RG RVQ +V EL+ EKIDIV WS D +V NAL PA V KV + E Sbjct: 242 PEVDSVGACVGQRGQRVQTIVDELKGEKIDIVEWSEDPVVYVANALSPAKVMKVNVLEGE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+RGQN RLA++LTGW IDI +E E D + Sbjct: 302 KMTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEARELGLLDEENENDELEEF 361 Query: 366 INVDEII 372 N + Sbjct: 362 TNEENER 368 >gi|238019442|ref|ZP_04599868.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748] gi|237864141|gb|EEP65431.1| hypothetical protein VEIDISOL_01311 [Veillonella dispar ATCC 17748] Length = 358 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 152/354 (42%), Positives = 223/354 (62%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+Q + +K +V+ + ++ +A R + D V I+ ETGD + Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGDYKVMAKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE +ISL AR D +IG VV + P +FGR A +AKQ++IQ+++EAE Sbjct: 63 QVVETVELPETEISLLEARKIDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ + G+II+G + RVE NV ++LG ++ ++ E I+ E R GDR+K YI Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIATETYREGDRIKCYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 243 NVDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|258404630|ref|YP_003197372.1| transcription elongation factor NusA [Desulfohalobium retbaense DSM 5692] gi|257796857|gb|ACV67794.1| NusA antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 440 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 167/406 (41%), Positives = 260/406 (64%), Gaps = 5/406 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL + D ++ ++ IDRD+++ + ++++ + + DI V + E GDI +++ Sbjct: 3 MELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVNKKFKNKLDIEVSFDEEAGDIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEEV++ +ISL AR DP++ + + + D GR+A QSAKQVIIQ++R+AE Sbjct: 63 VVVEEVDDPNTEISLDEARIEDPNVQLEDELGFRMEISDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD+ GEIISG ++R + I++LG ++ ++ + E I RE R GDRV+ YI Sbjct: 123 QEIIYEEYKDRRGEIISGIIQRRDRAGWIINLGRTEAILPKQEQIPRERFRRGDRVQGYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+E RGPQ+++SR+HP +M LF EVPE+ +G V + V+RDPG RAK+AV S DS Sbjct: 183 IDVRKEGRGPQIVVSRSHPDYMAALFKREVPEVGDGTVTIMGVARDPGKRAKVAVLSQDS 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V E + E+IDIVVW+ D AT+ +NAL PA ++++ +D+ Sbjct: 243 DVDPVGACVGVRGSRIQNIVQEFKGERIDIVVWNHDVATYAMNALSPAKISRMTVDDVEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QL+LAIGR+GQNV+LAS+L GW IDIITE + + + I Sbjct: 303 TLEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIITESRYGADPSDQADLEQAEHVTGI 362 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 D V G ++ L ++A+++G D +++ Sbjct: 363 PTD-----HFVQAGLGSLDALREASDEQLAAVDGMDTSKMADLRAA 403 >gi|332686768|ref|YP_004456542.1| transcription termination protein NusA [Melissococcus plutonius ATCC 35311] gi|332370777|dbj|BAK21733.1| transcription termination protein NusA [Melissococcus plutonius ATCC 35311] Length = 396 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 145/391 (37%), Positives = 229/391 (58%), Gaps = 1/391 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ EK I +++V+ + ++ A + YG ++ VE N + GDI ++ + E Sbjct: 4 EILNALNALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFNNKKGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + +I+L+ A + + +IG V+ + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEIALEDALAINGAYEIGDVIHFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF + +I+ G V+R + + V+LG + V+ + + + E + DR+K Y+ Sbjct: 124 TIIYNEFSEYENDIMQGIVERQDRRYIYVNLGKIEAVLSKQDQMPNEFYQAHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PE+Y+GIV++ +++R+ G R+K+AV S D + Sbjct: 184 KVENTSKGPQVFVSRSHPDLLKRLFEQEIPEVYDGIVEIVSIAREAGDRSKIAVRSIDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W+ D ++ NAL PA V V+ D + + Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPVVYISNALNPAQVVDVIFDPENNK 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 ++VP QLSLAIG+RGQN RLA++LTG+ IDI E + ++ E + Sbjct: 304 VCTIVVPDHQLSLAIGKRGQNARLAAKLTGFKIDIKAESNMADYYEQKQEEIEDEEIVHS 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + L+ E E Sbjct: 364 EMTSDDYELIKHTNDEQESEQEQAIEHESEE 394 >gi|315641143|ref|ZP_07896222.1| transcription elongation factor NusA [Enterococcus italicus DSM 15952] gi|315483151|gb|EFU73668.1| transcription elongation factor NusA [Enterococcus italicus DSM 15952] Length = 376 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 148/359 (41%), Positives = 225/359 (62%), Gaps = 1/359 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +D+V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKDIVIDALEAALISAYKRHYGQSQNVEVEFDRKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + ++ E +P DR+K Y+ Sbjct: 124 SIIYNEFSAYEKDIMQGIVERQDSRYIYVNLGKIEAVLSKQDQMANEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G R+K+AV S D + Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRSKIAVRSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG CVG +G RVQA+V EL+ E +DIV W D A F+ NAL PA VT V+ D Sbjct: 244 IDPVGTCVGPKGQRVQALVNELKGENMDIVEWDEDPAIFIANALNPAEVTDVLFDTTNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+RGQN RLA++LTG IDI +E + + ++ + Q + Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGHKIDIKSESDMAEFYEELDRQEAQADVSE 362 >gi|160880908|ref|YP_001559876.1| NusA antitermination factor [Clostridium phytofermentans ISDg] gi|160429574|gb|ABX43137.1| NusA antitermination factor [Clostridium phytofermentans ISDg] Length = 354 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 147/343 (42%), Positives = 224/343 (65%), Gaps = 2/343 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + EK I ++V+L M +S+ A ++ +G +I+V I+ TG +S+F Sbjct: 4 NKELIEALNQIEKEKDISKEVLLDAMENSLVAACKNHFGKADNIKVYIDRTTGAVSVFAE 63 Query: 66 LEVVEEVENYTCQISLKVA--RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+V++ +ISL A + ++G +V + P +FGR+A Q AKQV++QK+R Sbjct: 64 RVVVEQVQDPVLEISLAEATMKFPKGKYELGDIVQVEVTPKNFGRIAAQKAKQVVVQKIR 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER + ++ + +I++G V+R NV ++LG D V+ +E I E+ RP DR+K Sbjct: 124 EEERKVLFNQYYGREKDIVTGIVQRYVGNNVSINLGKVDAVLMENEQIKGEHFRPTDRIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ GIV++K++SR+ G R K+AV S Sbjct: 184 LYVLEVKDTTKGPKITVSRTHPELVKRLFEAEVTEVKEGIVEIKSISREAGDRTKMAVSS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D ++DPVGACVG+ G+RV A+V EL EKIDIV WS D A + NAL PA V V + E Sbjct: 244 NDPNVDPVGACVGLNGARVNAIVNELGGEKIDIVNWSDDPAELIENALSPAKVVSVDVSE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIVP QLSLAIGR+GQN RLA++LTG+ IDI +E + Sbjct: 304 GEMSAKVIVPDYQLSLAIGRQGQNARLAARLTGYKIDIKSESQ 346 >gi|16803362|ref|NP_464847.1| transcription elongation factor NusA [Listeria monocytogenes EGD-e] gi|224501735|ref|ZP_03670042.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-561] gi|16410738|emb|CAC99400.1| nusA [Listeria monocytogenes EGD-e] Length = 372 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 147/338 (43%), Positives = 223/338 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYQPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSET 341 >gi|293374143|ref|ZP_06620477.1| transcription termination factor NusA [Turicibacter sanguinis PC909] gi|325837442|ref|ZP_08166424.1| transcription termination factor NusA [Turicibacter sp. HGF1] gi|292647246|gb|EFF65222.1| transcription termination factor NusA [Turicibacter sanguinis PC909] gi|325490974|gb|EGC93272.1| transcription termination factor NusA [Turicibacter sp. HGF1] Length = 351 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 150/346 (43%), Positives = 217/346 (62%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N E + + EK I +D+++ ++ A + + ++++VEIN TG + L+ Sbjct: 1 MNTKEFFAALELLEKEKGISKDIIIEAFEHALISAYKKNFNQATNVKVEINEVTGTVKLY 60 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + VVEEV QISL A +P G +++ + P DFGR+A Q+AKQV+ Q++R Sbjct: 61 QQKTVVEEVTRPQEQISLDEAMRLNPHYQEGDIINFEVTPKDFGRIATQTAKQVVKQRIR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AERD + EFKD+ GEI++G V + + +V VDLG + ++ E ++ + ++P R+K Sbjct: 121 QAERDNLFQEFKDREGEIVTGIVVKDDGKHVFVDLGKIEALLPIREIMNPDEIKPNSRIK 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI + + +GP V +SR P + +LF +EVPEIY+G V++ +V+RD G R K+ V S Sbjct: 181 VYISKIESKNKGPVVYVSRKDPNLIKRLFELEVPEIYDGTVEIMSVARDAGDRTKICVAS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D ++DPVGACVG G RVQ +V EL EKIDI+ +S D A V NAL PA V+KVV+DE Sbjct: 241 EDENVDPVGACVGPSGQRVQNIVDELNGEKIDIIQFSKDPAVLVANALSPAQVSKVVVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+RGQN RLA+QLTGW IDI E E Sbjct: 301 AKKATVVLVPDNQLSLAIGKRGQNARLAAQLTGWKIDIKPESEADN 346 >gi|251797400|ref|YP_003012131.1| NusA antitermination factor [Paenibacillus sp. JDR-2] gi|247545026|gb|ACT02045.1| NusA antitermination factor [Paenibacillus sp. JDR-2] Length = 365 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 141/363 (38%), Positives = 227/363 (62%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ ++ + +K I ++V+L + ++ + + + ++RV+IN +G I ++ Sbjct: 3 MDFIEALSEIERDKGIAKEVLLEAIEAALISSYKRNFNAAQNVRVDINRHSGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +I++ +R+ +P + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 TVVDEVLDPRLEITVDASREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKSYI Sbjct: 123 RGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ++LSRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV+S + Sbjct: 183 TKVENTTKGPQIILSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVYSRNE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V EL EKIDIV WS +V NAL P+ V +V++ E Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELTGEKIDIVRWSESVEEYVANALSPSKVLEVIVFEQEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + + ++ Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEYGRPKTTASTMHQDSV 362 Query: 367 NVD 369 ++D Sbjct: 363 SID 365 >gi|310828067|ref|YP_003960424.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612] gi|308739801|gb|ADO37461.1| hypothetical protein ELI_2479 [Eubacterium limosum KIST612] Length = 411 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 160/418 (38%), Positives = 255/418 (61%), Gaps = 15/418 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ DA+ EK+ID++ ++ + SI+ A + YG + D+ V+++ +TG+I+++ Sbjct: 2 NAEFMRALDALEAEKNIDKEELIDAIEVSIESAYKKNYGNVQDVDVKLDRDTGEITVYAT 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+VEN QISL+ AR+ DP+ ++G V + P DFGR+A Q+AKQ+I+Q+++EA Sbjct: 62 RDIVEDVENLETQISLEEAREIDPTYEVGDVYRKVITPRDFGRIAAQNAKQLIVQRIKEA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ Y E+ ++ E+++G + R+E GNV VD+GNS+G + E + E PG R+K Y Sbjct: 122 ERNMVYNEYLERQEEVMTGIINRIERGNVFVDIGNSEGCMPPMEQVPGEKYYPGQRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + VR+ +GPQ+ LSRTHP + +LF EVPEIY+GIV + ++SR+ GSR K+AV ++D Sbjct: 182 LLMVRKTTKGPQLRLSRTHPGLVKRLFETEVPEIYDGIVDIVSISREAGSRTKIAVKAND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 SS+DPVGACVG +G RVQ ++ EL EKIDI+ +S D ++ NAL PA + +++ ++ Sbjct: 242 SSVDPVGACVGQKGIRVQNIINELNGEKIDIIKYSDDVREYLSNALSPAKIYRILPNKTE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +V QLSLAIG+ GQNVRLA++L W IDI ++ + R N Sbjct: 302 KTAIAVVDDFQLSLAIGKEGQNVRLAAKLASWKIDIKSKSDYE--RMLAENPDFDADYTN 359 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 +E I L E + E+ I DE+ A + + + ++ Sbjct: 360 AGEEEDILDELKNE------------LDEVLDI-QIDEDNAESLDNVLDDLVMTDELE 404 >gi|51246466|ref|YP_066350.1| transcription elongation factor NusA [Desulfotalea psychrophila LSv54] gi|50877503|emb|CAG37343.1| related to transcription termination factor (NusA) [Desulfotalea psychrophila LSv54] Length = 466 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 179/452 (39%), Positives = 280/452 (61%), Gaps = 17/452 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L +I D ++ ++ ID+ +++S + ++++ AA+ +G+ DI V N E G++ +F+ Sbjct: 4 DLKRIIDQISRDRGIDKGILVSAIEEAVESAAKKKFGSRRDIEVRYNEEYGEVDVFQFRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I+L+ AR DP++ +G + + + + D GR+A QSAKQVII ++++AE Sbjct: 64 VVEEIEDEQTEIALEDARILDPAVQLGDDLGEKMSNITDLGRIAAQSAKQVIINRMKDAE 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y +KD+VGE++SG V+R E GN++V+LG +D ++ ++ I + + GDR+++Y+ Sbjct: 124 RDVIYDMYKDRVGEVVSGIVQRFERGNMVVNLGRTDAILPKEHQIPKRTFKQGDRIRAYL 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+ R Q++LSRT +F+ KLF MEVPE+ GIV+V VSR+PG RAK+AV SS+S Sbjct: 184 LEVRQTSRDCQLILSRTCDEFLEKLFQMEVPEMSEGIVRVLGVSREPGFRAKIAVSSSES 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGM+GSRVQ VV EL+ E+IDIV WSPD A +V NAL PA V+ V DE+ Sbjct: 244 DVDPVGACVGMKGSRVQNVVQELQGERIDIVTWSPDIAKYVYNALAPAHVSMVRNDEERN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V+VP +QLSLAIGR+GQNVRLAS+L G ID+ +E+ + + + + Sbjct: 304 SLLVVVPNDQLSLAIGRQGQNVRLASRLLGCRIDVKSEQRYANLQDPGYQSLLKIH---- 359 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE----------- 415 +DE +A L A G LA +I+++ + +EE A + A+ Sbjct: 360 GIDEGLADQLWARGIVSTAVLAQTEIADLTVLRAINEEFAAALVKDAQANPFVAEETEIS 419 Query: 416 -YLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 + + SEE + I Sbjct: 420 SVEASEAENINADTVDAESSEEAVVVEEITDN 451 >gi|303229675|ref|ZP_07316463.1| transcription termination factor NusA [Veillonella atypica ACS-134-V-Col7a] gi|303232179|ref|ZP_07318882.1| transcription termination factor NusA [Veillonella atypica ACS-049-V-Sch6] gi|302513285|gb|EFL55324.1| transcription termination factor NusA [Veillonella atypica ACS-049-V-Sch6] gi|302515800|gb|EFL57754.1| transcription termination factor NusA [Veillonella atypica ACS-134-V-Col7a] Length = 361 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 153/351 (43%), Positives = 222/351 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+Q + +K +V+ + ++ +A R + D VE+N ETG + Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPHSNPDAYVELNRETGAYKVMAKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE +ISL AR D +IG +V + P +FGR A +AKQ++IQ+++EAE Sbjct: 63 QVVETVEFPETEISLLDARKIDKRYEIGDIVEADVTPANFGRSAAHTAKQMLIQRLKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E GDR+K YI Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVYINLGKTEAILPPTEQIGTETYHEGDRIKCYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+++SRTHP + +LF +EVPEIY G+V++K+V+R+PG R+K+AV+S D Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIYEGVVELKSVAREPGMRSKIAVYSRDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 SIDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 243 SIDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + N F Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAENPFTGFTS 353 >gi|158320557|ref|YP_001513064.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs] gi|158140756|gb|ABW19068.1| NusA antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 345 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 139/344 (40%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + +K I +D+++ + ++ + + +G+ ++RVEIN + G++ ++ Sbjct: 2 NAEFTEALEQIEKDKGISKDILIDAVEAALISSYKRNFGSSQNVRVEINRDNGEVHVYAQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++ ++V + +I + A+ +P +G + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KKITDDVIDDLLEIHIDDAKIVNPKYSVGDTFESEVTPKNFGRIAAQTAKQVVVQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ EII+G V RV GNV + LG ++ ++ E I E GDR+K Y Sbjct: 122 ERGIVYDEFINRESEIITGEVSRVAKGNVYISLGRTEAILGPGEQIPNEVYEHGDRIKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GPQ+LLSRTHP + +LF +EVPEI++G V++K++SR+ GSRAK+AV S D Sbjct: 182 IVEVKKTTKGPQILLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREAGSRAKIAVDSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGACVG +G+RVQ +V EL+ EKIDI+ +S D+ F+ ++L PA V ++ D Sbjct: 242 PNVDAVGACVGPKGARVQTIVDELKGEKIDIIKYSEDAKEFIASSLSPAKVLLCDINNDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + Sbjct: 302 KTAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQINE 345 >gi|47095907|ref|ZP_00233510.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a F6854] gi|224499904|ref|ZP_03668253.1| transcription elongation factor NusA [Listeria monocytogenes Finland 1988] gi|254828682|ref|ZP_05233369.1| transcription elongation factor NusA [Listeria monocytogenes FSL N3-165] gi|254829921|ref|ZP_05234576.1| transcription elongation factor NusA [Listeria monocytogenes 10403S] gi|254898513|ref|ZP_05258437.1| transcription elongation factor NusA [Listeria monocytogenes J0161] gi|254911996|ref|ZP_05262008.1| N utilization substance protein A [Listeria monocytogenes J2818] gi|254936323|ref|ZP_05268020.1| transcription elongation factor NusA [Listeria monocytogenes F6900] gi|284801707|ref|YP_003413572.1| transcription elongation factor NusA [Listeria monocytogenes 08-5578] gi|284994849|ref|YP_003416617.1| transcription elongation factor NusA [Listeria monocytogenes 08-5923] gi|47015653|gb|EAL06583.1| N utilization substance protein A [Listeria monocytogenes str. 1/2a F6854] gi|258601086|gb|EEW14411.1| transcription elongation factor NusA [Listeria monocytogenes FSL N3-165] gi|258608913|gb|EEW21521.1| transcription elongation factor NusA [Listeria monocytogenes F6900] gi|284057269|gb|ADB68210.1| transcription elongation factor NusA [Listeria monocytogenes 08-5578] gi|284060316|gb|ADB71255.1| transcription elongation factor NusA [Listeria monocytogenes 08-5923] gi|293589960|gb|EFF98294.1| N utilization substance protein A [Listeria monocytogenes J2818] gi|313623922|gb|EFR94030.1| transcription termination factor NusA [Listeria innocua FSL J1-023] Length = 372 Score = 352 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 148/350 (42%), Positives = 226/350 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRND 353 >gi|323173571|gb|EFZ59200.1| transcription elongation protein nusA [Escherichia coli LT-68] Length = 381 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 167/398 (41%), Positives = 250/398 (62%), Gaps = 19/398 (4%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177 +QKVREAER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN R Sbjct: 1 MQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 60 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRA Sbjct: 61 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 120 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V Sbjct: 121 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 180 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + + Sbjct: 181 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 240 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ L Sbjct: 241 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 300 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 I ++ + + +++L ++ GID + L G+ T+EDLA +DDL Sbjct: 301 ATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAARGVCTLEDLAEQGIDDLADIE--- 357 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 358 --------------GLTDEKAGALIMAAR-NICWFGDE 380 >gi|225390157|ref|ZP_03759881.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme DSM 15981] gi|225043751|gb|EEG53997.1| hypothetical protein CLOSTASPAR_03907 [Clostridium asparagiforme DSM 15981] Length = 393 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 156/389 (40%), Positives = 241/389 (61%), Gaps = 5/389 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I ++ +L + +S+ A ++ +G ++RV INP+T D +++ Sbjct: 8 NKELLEAMEVLEKEKNISKETLLEAIENSLLTACKNHFGKADNVRVNINPDTCDFAVYME 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE E+ QISL A+ +P ++G V PL FGR+A Q+AK VI+QK+RE Sbjct: 68 KEVVETPEDDQLQISLVDAKMMNPKYEVGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K ++++G V+R+ NV ++LG D ++ E + E RP +RVK Y Sbjct: 128 ERSSLYKEYYMKEKDVMTGIVQRMLGKNVSINLGRVDAILNESEQVKGETFRPTERVKVY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR+K+AV S+D Sbjct: 188 ILEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRSKIAVMSND 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ GSRV ++V ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 248 PNVDPVGACVGLNGSRVNSIVNELRGEKIDIINWDENPAYLIENALSPAKVICVVADEEE 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + ++ Q +Q Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSET-----QAREMGLFEQMGLQY 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + E + E + D + A + ++ Sbjct: 363 GDAPEDTYEEEIQEDYQDYDSEAGQEDAD 391 >gi|227534931|ref|ZP_03964980.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187687|gb|EEI67754.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 417 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 140/343 (40%), Positives = 212/343 (61%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEAND 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQN RLA++LTG+ I I E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIHIKPESEVE 346 >gi|304404290|ref|ZP_07385952.1| transcription termination factor NusA [Paenibacillus curdlanolyticus YK9] gi|304347268|gb|EFM13100.1| transcription termination factor NusA [Paenibacillus curdlanolyticus YK9] Length = 366 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 228/359 (63%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +E ++ + EK I +D+++ + ++ + + + T ++RV++N TG I ++ Sbjct: 3 MEFIEALQEIEREKGISKDILIDAIEAALISSYKRNFNTAQNVRVDVNRFTGVIKVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV + +I+++ AR+ +P + + + P DFGR+A Q+AKQV+ Q++REAE Sbjct: 63 TVVDEVLDSRMEITVEAAREINPHYQLDDIADIEVTPRDFGRIAAQTAKQVVTQRIREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y F DK +I++G V+R + N+ VDLG + V+ E + + + GDRVKS+I Sbjct: 123 RGLIYNAFIDKEEDIVNGIVQRQDTRNLFVDLGKVEAVLPLTELMPTDKFKHGDRVKSFI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V +GPQ+++SRTHP + +LF +EVPEIY+G+V++++V+R+ G R+K+AV S + Sbjct: 183 TKVENTTKGPQIIMSRTHPGLLKRLFELEVPEIYDGVVEIRSVAREAGFRSKIAVHSRNV 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVG+CVG +G RVQ +V EL+ EKIDIV WS + +V NAL P+ V +V++ E Sbjct: 243 EVDPVGSCVGPKGMRVQTIVNELKGEKIDIVRWSENIDEYVANALSPSKVLEVIVFEQEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG +GQN RLA++LTGW IDI +E + + ++ + Q Sbjct: 303 MARVIVPDYQLSLAIGIKGQNARLAAKLTGWKIDIKSETQAEQEFGRPRSDESDTMHQD 361 >gi|313893742|ref|ZP_07827309.1| transcription termination factor NusA [Veillonella sp. oral taxon 158 str. F0412] gi|313441756|gb|EFR60181.1| transcription termination factor NusA [Veillonella sp. oral taxon 158 str. F0412] Length = 358 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 151/354 (42%), Positives = 223/354 (62%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAE Sbjct: 63 QVVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 243 NVDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVISVDVSEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|289434603|ref|YP_003464475.1| transcription termination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170847|emb|CBH27389.1| transcription termination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638097|gb|EFS03364.1| transcription termination factor NusA [Listeria seeligeri FSL S4-171] Length = 372 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 149/368 (40%), Positives = 228/368 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++S+ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTSNEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDAAPVEEAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETFTEDE 371 >gi|16078723|ref|NP_389542.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. 168] gi|221309538|ref|ZP_03591385.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. 168] gi|221313862|ref|ZP_03595667.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318785|ref|ZP_03600079.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. JH642] gi|221323057|ref|ZP_03604351.1| transcription elongation factor NusA [Bacillus subtilis subsp. subtilis str. SMY] gi|321315427|ref|YP_004207714.1| transcription elongation factor NusA [Bacillus subtilis BSn5] gi|7404400|sp|P32727|NUSA_BACSU RecName: Full=Transcription elongation protein nusA gi|2634032|emb|CAB13533.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Bacillus subtilis subsp. subtilis str. 168] gi|291484215|dbj|BAI85290.1| transcription elongation factor NusA [Bacillus subtilis subsp. natto BEST195] gi|320021701|gb|ADV96687.1| transcription elongation factor NusA [Bacillus subtilis BSn5] Length = 371 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 149/368 (40%), Positives = 228/368 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPRELEEDDEPLFTE 363 Query: 368 VDEIIAHL 375 + + Sbjct: 364 PETAESDE 371 >gi|317153847|ref|YP_004121895.1| transcription termination factor NusA [Desulfovibrio aespoeensis Aspo-2] gi|316944098|gb|ADU63149.1| transcription termination factor NusA [Desulfovibrio aespoeensis Aspo-2] Length = 466 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 171/403 (42%), Positives = 265/403 (65%), Gaps = 5/403 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ A +G DI V N ++G+I +F Sbjct: 3 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFKV 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISL+ AR+ DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+ Sbjct: 63 VVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+KD++GEI SG V+R + I++LG ++ ++ +DE I RE + GDRV++YI Sbjct: 123 EIIFEEYKDRLGEITSGIVQRRDRTGWIINLGRTEALLPKDEQIPRERYKRGDRVQAYII 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +E RGPQV++SR+HP +M++LF EVPE+ +G V++ V+RDPG RAK+AV S D Sbjct: 183 DVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q VV E++ E+IDIVVWSPD A + +AL PA++T++ +D++ Sbjct: 243 VDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE R + N + Q + Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNASRKGMDQVAS 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 V EI GF +E + E+ +I G + +I+ Sbjct: 358 VAEIPMESFFNAGFESLESIVRATNEELLAINGLTKSKIGDIR 400 >gi|269797844|ref|YP_003311744.1| NusA antitermination factor [Veillonella parvula DSM 2008] gi|269094473|gb|ACZ24464.1| NusA antitermination factor [Veillonella parvula DSM 2008] Length = 358 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 151/354 (42%), Positives = 222/354 (62%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAE Sbjct: 63 QVVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ + G+II+G + RVE NV ++LG ++ ++ E I E R GDR+K YI Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFINLGKTEAILPPTEQIVTETYREGDRIKCYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 243 NIDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 303 SSYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|222151100|ref|YP_002560254.1| transcription termination-antitermination factor [Macrococcus caseolyticus JCSC5402] gi|222120223|dbj|BAH17558.1| transcription termination-antitermination factor [Macrococcus caseolyticus JCSC5402] Length = 353 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL D + EKSI R+V++ + ++ A + Y + +++RVE+N + G ++ Sbjct: 3 NNELLNAIDFLEKEKSIPREVLIETIEAALITAYKKNYNSANNVRVELNMDNGAYRVYSR 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV N ++SL+ A +P+ +IG + + + P DFGRV+ Q+AKQ ++Q++R+A Sbjct: 63 KNVVEEVMNSREEVSLETALLSNPAYEIGDIYEEDVTPKDFGRVSAQAAKQAVLQRLRDA 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF DK +I++G + RV++ V V LG ++ V+ E E RP +R+K Y Sbjct: 123 ERGILYNEFIDKEDDIMTGIIDRVDHRYVYVTLGKTEAVLSEAERSPNEVYRPTERIKVY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 183 VNKVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFDGTVVVKSVAREAGDRSKISVYSDN 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID VGACVG +G+RV+AVV EL EKIDIV WS D+ TFV NAL P+ V V++DE Sbjct: 243 PDIDAVGACVGAKGARVEAVVEELGGEKIDIVEWSADTKTFVKNALSPSQVVDVLVDEAN 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG++GQN RLA++LTGW IDI +E + Sbjct: 303 QSTTVIVPDYQLSLAIGKKGQNARLAAKLTGWKIDIKSETDAKE 346 >gi|257875536|ref|ZP_05655189.1| transcription termination factor NusA [Enterococcus casseliflavus EC20] gi|257809702|gb|EEV38522.1| transcription termination factor NusA [Enterococcus casseliflavus EC20] Length = 404 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 153/398 (38%), Positives = 236/398 (59%), Gaps = 7/398 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G+I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKEAMTINPAYEIGDKIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K ++ Sbjct: 124 NIIYNEFSAYEKDILQGIVERQDNRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVFVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPE+Y+G V++ +++R+ G RAK+AV S D++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGTVEIVSIAREAGDRAKVAVRSFDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 +DPVG CVG +G RVQA+V EL+ E +DIV W+ DSA F+ NAL PA V+ V+ D D Sbjct: 244 VDPVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDSAIFIANALNPAEVSDVIFDVDNPK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + K A Sbjct: 304 ACTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETDMEEFYAKLDEGDYIDEYDAT 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + E + E A I S + ++ Sbjct: 364 ASEA------AEESSTEATESAETVDEAILSSDMTADD 395 >gi|254556874|ref|YP_003063291.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1] gi|300768187|ref|ZP_07078092.1| transcription termination factor NusA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180815|ref|YP_003924943.1| transcription elongation factor NusA [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045801|gb|ACT62594.1| transcription elongation factor NusA [Lactobacillus plantarum JDM1] gi|300494251|gb|EFK29414.1| transcription termination factor NusA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046306|gb|ADN98849.1| transcription elongation factor NusA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 405 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 145/365 (39%), Positives = 222/365 (60%), Gaps = 1/365 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + E Sbjct: 4 ELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y+ Sbjct: 124 GIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ + Sbjct: 184 KVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R Sbjct: 244 VDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTDDQAVFIANALNPAEVLDVIFDPENER 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + ++ + Sbjct: 304 GCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEASDIMDANPDDVAVAETETT 363 Query: 367 NVDEI 371 Sbjct: 364 EAASD 368 >gi|313633405|gb|EFS00241.1| transcription termination factor NusA [Listeria seeligeri FSL N1-067] Length = 372 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 228/368 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDAAPVEEAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETFTEDE 371 >gi|28378676|ref|NP_785568.1| transcription elongation factor NusA [Lactobacillus plantarum WCFS1] gi|28271512|emb|CAD64417.1| transcription termination-antitermination factor NusA [Lactobacillus plantarum WCFS1] Length = 405 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 145/351 (41%), Positives = 221/351 (62%), Gaps = 1/351 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I ++VV+ + ++ A + YG ++ V+ + G+I ++ + E Sbjct: 4 ELLGALDTLESEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVDFDQIKGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + ++SL+ A + + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEDVFDSRLEVSLQDALAINRAYEIGDDIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI++G V+R + V V LG + V+ R + + E R D++K Y+ Sbjct: 124 GIIYDEYSQYENEIVTGEVERQDNRFVYVSLGKVEAVMGRSDQLPGEVYRIHDKIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEI++GIV++ +++R+ G RAK+AV S++ + Sbjct: 184 KVENATKGPQVFVSRTAPDLLKRLFEQEVPEIFDGIVEIVSIAREAGDRAKVAVRSNNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG CVG +G RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + R Sbjct: 244 VDPVGTCVGPKGQRVQTIVNELHGENMDIVEWTYDQAVFIANALNPAEVLDVIFDPENER 303 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + ++ Sbjct: 304 GCTVVVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEASDIMDANPDD 354 >gi|282848827|ref|ZP_06258220.1| transcription termination factor NusA [Veillonella parvula ATCC 17745] gi|294791739|ref|ZP_06756887.1| transcription termination factor NusA [Veillonella sp. 6_1_27] gi|294793600|ref|ZP_06758737.1| transcription termination factor NusA [Veillonella sp. 3_1_44] gi|282581481|gb|EFB86871.1| transcription termination factor NusA [Veillonella parvula ATCC 17745] gi|294455170|gb|EFG23542.1| transcription termination factor NusA [Veillonella sp. 3_1_44] gi|294456969|gb|EFG25331.1| transcription termination factor NusA [Veillonella sp. 6_1_27] Length = 358 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 152/354 (42%), Positives = 223/354 (62%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+Q + +K +V+ + ++ +A R + D V I+ ETG + Sbjct: 3 QELIQAVMVLTKQKGFAPEVIFESLEAALLQAYRKEPTSNPDAYVVIDRETGVYKVMAKK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VVE VE +ISL AR +D +IG VV + P +FGR A +AKQ++IQ+++EAE Sbjct: 63 QVVETVELPETEISLLDARKKDKRFEIGDVVEVDVTPANFGRSAAHTAKQMLIQRLKEAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y E+ + G+II+G + RVE NV +DLG ++ ++ E I+ E R GDR+K YI Sbjct: 123 RSVVYEEYYSREGDIITGVITRVEGKNVFIDLGKTEAILPPTEQIATETYREGDRIKCYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+++SRTHP + +LF +EVPEI+ G+V++K+V+R+PG R+K+AV+S D Sbjct: 183 VEVKKTTKGPQIMISRTHPGLLKRLFELEVPEIFEGVVELKSVAREPGMRSKIAVYSRDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDPVGACVG +G RVQ +V EL DEKIDIV W D A ++ N+L PA V V + E+ Sbjct: 243 NIDPVGACVGPKGQRVQHIVDELHDEKIDIVKWDEDPAIYIANSLSPAKVVSVDVSEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQN RLA++LT W IDI +E + + F Sbjct: 303 ASYVVVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSETQAAEEPFTGFGNAED 356 >gi|239626256|ref|ZP_04669287.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520486|gb|EEQ60352.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 401 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 152/389 (39%), Positives = 233/389 (59%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++ Sbjct: 8 NKELLEAMEVLEKEKNIAKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAE 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ +ISL A+ P D+G V PL FGR+A Q+AK VI+QK+RE Sbjct: 68 KTVVEQVEDDIMEISLADAKMLSPKYDLGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K ++++G V+R NV ++LG D ++ E + E RP +R+K Y Sbjct: 128 ERKVLYNEYYTKEKDVMTGIVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERIKVY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 188 VLEVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSND 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 248 SNVDPVGACVGLNGARVNAIVSELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEEE 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + A Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAREMGLFEQMGLQYGDAPA 367 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + +E E + E + Sbjct: 368 PSFEEDSFEEDSLEETENYPEYEEGYQED 396 >gi|323697469|ref|ZP_08109381.1| transcription termination factor NusA [Desulfovibrio sp. ND132] gi|323457401|gb|EGB13266.1| transcription termination factor NusA [Desulfovibrio desulfuricans ND132] Length = 459 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 175/425 (41%), Positives = 269/425 (63%), Gaps = 5/425 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ A YG DI V N E G+I +F Sbjct: 3 ELKRAIDQISKDRGIDRDLLIDTLEEAVRSAVARKYGETMDIEVAFNEERGEIEVFEFKV 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ AR DP+ + + P+ D GR+A QSAKQVIIQ++R+AE+ Sbjct: 63 VVDEVHDPISEISLEDARTHDPNAQLDDEMGFPVKVEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+KD+V EI SG ++R + I++LG ++ ++ ++E I RE + GDRV++YI Sbjct: 123 EIIYEEYKDRVSEIASGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQAYII 182 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +E RGPQV++SR+HP +MV+LF EVPE+ +G V++ V+RDPG RAK+AV S D Sbjct: 183 DVLKESRGPQVIVSRSHPDYMVELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDRD 242 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q VV EL+ E+IDIVVWSPD A + +AL PA++T++ +D++ Sbjct: 243 VDPVGACVGIRGSRIQNVVQELKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEEA 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+ P +QL+LAIGR+GQNV+LA++L GW IDI TE R + N + Q + Sbjct: 303 LEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNAARKGMDQIAS 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V E+ + GF +E + E+ +I+G E +++ ++ T Sbjct: 358 VAEVPMENFFSAGFESIESIVQASDEELLAIKGMTESKIGDMRLAINMLAPDLEATAPAD 417 Query: 428 IRELG 432 E Sbjct: 418 AHEAE 422 >gi|116495058|ref|YP_806792.1| transcription elongation factor NusA [Lactobacillus casei ATCC 334] gi|191638561|ref|YP_001987727.1| transcription elongation factor NusA [Lactobacillus casei BL23] gi|239631347|ref|ZP_04674378.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066621|ref|YP_003788644.1| transcription elongation factor [Lactobacillus casei str. Zhang] gi|116105208|gb|ABJ70350.1| Transcription elongation factor [Lactobacillus casei ATCC 334] gi|190712863|emb|CAQ66869.1| Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) [Lactobacillus casei BL23] gi|239525812|gb|EEQ64813.1| transcription elongation factor NusA [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439028|gb|ADK18794.1| Transcription elongation factor [Lactobacillus casei str. Zhang] gi|327382599|gb|AEA54075.1| N utilization substance protein A [Lactobacillus casei LC2W] gi|327385797|gb|AEA57271.1| N utilization substance protein A [Lactobacillus casei BD-II] Length = 417 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 141/343 (41%), Positives = 213/343 (62%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV S++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRSTNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEAND 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVE 346 >gi|303240818|ref|ZP_07327331.1| transcription termination factor NusA [Acetivibrio cellulolyticus CD2] gi|302591706|gb|EFL61441.1| transcription termination factor NusA [Acetivibrio cellulolyticus CD2] Length = 371 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 237/368 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ + + EK I++D+++ + ++ A + +G+ ++RV ++ +TGD ++ L Sbjct: 4 DLIHALEQLEKEKGIEKDIIIEAIEAALISAYKRNFGSSQNVRVSVDRQTGDFKVYALKR 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + +N IS++ A+ + +D + + P FGR+A Q+AKQV++Q++REAER Sbjct: 64 VTSDPQNEYMDISVENAKKINAELDEEDMAEVEVTPKKFGRIAAQTAKQVVVQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + EF +K EI++G V+R E NVI+DLG ++ V+ E IS E + DR+K Y+ Sbjct: 124 GIIFDEFSNKEAEIVTGIVQRTEKKNVIIDLGKTEAVLAPTEQISGEEYKFNDRIKVYVI 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+R +GPQ+++SRTHP + +LF +EVPEI+ G+V++K++SR+PGSR K+AV+S D + Sbjct: 184 EVKRTTKGPQIMVSRTHPGLIKRLFELEVPEIHEGVVEIKSISREPGSRTKIAVYSKDDN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V ELR EKIDI+ WS + ++ ++L PA V +V + E+ Sbjct: 244 VDPVGACVGQKGTRVQTIVDELRGEKIDIIKWSSNPQEYISSSLSPAKVVRVDISEEEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +V VP QLSLAIG+ GQN RLA++LTGW IDI +E + ++ F A + Sbjct: 304 AKVTVPDFQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRATIEQQLLNFDGGFQSAFS 363 Query: 368 VDEIIAHL 375 DE Sbjct: 364 EDEPDEDE 371 >gi|16800427|ref|NP_470695.1| transcription elongation factor NusA [Listeria innocua Clip11262] gi|16413832|emb|CAC96590.1| nusA [Listeria innocua Clip11262] Length = 372 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPVVEEAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETFTEDE 371 >gi|317484449|ref|ZP_07943362.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6] gi|316924309|gb|EFV45482.1| transcription termination factor NusA [Bilophila wadsworthia 3_1_6] Length = 434 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 169/407 (41%), Positives = 267/407 (65%), Gaps = 5/407 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I + + Sbjct: 2 NLELKKAIDQISKDKGLDRDMLVDTLEDAVRTSVIRKYGENIDVEVSYNDDTGEIQVHQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++V + +I ++ AR+ DPS+ + + PL D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVDDVADPDTEIDIEKARELDPSVQLDDEIGFPLKVTDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y EFKD+VGEI SG ++R + G I++LG ++ ++ ++E I RE+ + GDRV++ Sbjct: 122 EQELIYEEFKDRVGEICSGIIQRRDKGGWIINLGRTEAILPKEEQIPREHYKRGDRVQAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++E RGPQ+++SR+H + LF EVPE+ +G VQ+ V+RDPGSRAK+AV S + Sbjct: 182 IIEVKKEGRGPQIVISRSHRDYTAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVLSRE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V EL E+IDIVVWSP+ +T+ NAL PA+++++V+DE Sbjct: 242 RDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSPEISTYARNALAPAVISRIVVDEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 302 NLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTET-----RYNETNAIGRGLEQV 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +V E+ LV+ GF +E+L E++ + +++ Sbjct: 357 ASVAEVSVDSLVSAGFTTLEQLQDATDEELSEKLSLSDSRIGDLRAA 403 >gi|226313023|ref|YP_002772917.1| transcription elongation factor NusA [Brevibacillus brevis NBRC 100599] gi|226095971|dbj|BAH44413.1| transcription elongation protein NusA [Brevibacillus brevis NBRC 100599] Length = 363 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 147/352 (41%), Positives = 230/352 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + ++ +A+ EK I +DV++ + ++ + + + ++RV++N +G + ++ Sbjct: 2 NGDFIEALEAIEREKGITKDVLIEAIEAALISGYKRNFNSAQNVRVDVNRHSGMVRVYAR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +IS + A++ DP+ + +V + P DFGR+A Q+AKQV+ Q++REA Sbjct: 62 KSVVEEVLDPRLEISQEAAQEIDPNFRLEDIVEIEVTPRDFGRIAAQTAKQVVTQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ +I++G V+R++ N +DLG ++ V+ E + E+ + DRVK+Y Sbjct: 122 ERGLIYSEFIEREDDIVTGVVQRMDARNYYIDLGKAEAVMPITEKMPSEDFKSQDRVKAY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ+++SRTHP + +LF +EVPEIY+G+V++K+V+R+ G R+K+AV S + Sbjct: 182 IIKVEKTTKGPQIVVSRTHPGLLKRLFELEVPEIYDGVVEIKSVAREAGDRSKIAVHSIN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DPVGACVG +G RVQ +VTEL+ EKIDIV WS D A +V NAL PA V V ++ Sbjct: 242 ADVDPVGACVGPKGMRVQTIVTELKGEKIDIVRWSEDPAEYVANALSPAKVLHVEVNVAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + E Sbjct: 302 KVTRVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESQADQEGIAYPKE 353 >gi|238924307|ref|YP_002937823.1| transcription elongation factor NusA [Eubacterium rectale ATCC 33656] gi|238875982|gb|ACR75689.1| transcription elongation factor NusA [Eubacterium rectale ATCC 33656] gi|291525077|emb|CBK90664.1| transcription termination factor NusA [Eubacterium rectale DSM 17629] gi|291529172|emb|CBK94758.1| transcription termination factor NusA [Eubacterium rectale M104/1] Length = 414 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 154/413 (37%), Positives = 241/413 (58%), Gaps = 2/413 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL+ + + EK+I ++ +L + +S+ A ++ +G +++VEI+PET S ++ Sbjct: 4 ELLEALNILEQEKNISKETLLEAIENSLVTACKNHFGKSDNVKVEIDPETCAFSCYQEKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ VE+ +ISL A + + +G +V + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVDTVEDPVEEISLADAHKVNGNYQLGDIVRVEVKSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ K ++++G V+R NV ++LG +D ++ E I E +P +R+K YI Sbjct: 124 KVIFDEYNSKEKDVVTGVVQRYIGKNVSINLGKADALLTESEQIKGEVFKPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++KA+SR+ GSR K+AV+S+D + Sbjct: 184 EVKSTSKGPKILVSRTHPELVKRLFESEVTEVKEGIVEIKAISREAGSRTKIAVWSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM G+RV A+V ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDPVGACVGMNGARVNAIVNELRGEKIDIITWDENPAILIQNALSPAKVISVIADADEKS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + Sbjct: 304 AKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFMDYENDYEEDDYDD 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + L E A V+ DE A + A + + Sbjct: 364 DYDYSDDELAENERLADTEQADVQAEAFD--TEADENEAAGTENDAADSGDEQ 414 >gi|217964531|ref|YP_002350209.1| transcription termination factor NusA [Listeria monocytogenes HCC23] gi|290893567|ref|ZP_06556550.1| N utilization substance protein A [Listeria monocytogenes FSL J2-071] gi|217333801|gb|ACK39595.1| transcription termination factor NusA [Listeria monocytogenes HCC23] gi|290556912|gb|EFD90443.1| N utilization substance protein A [Listeria monocytogenes FSL J2-071] gi|307570903|emb|CAR84082.1| transcription termination factor [Listeria monocytogenes L99] gi|313619131|gb|EFR90921.1| transcription termination factor NusA [Listeria innocua FSL S4-378] Length = 372 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETFTEDE 371 >gi|160940464|ref|ZP_02087809.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC BAA-613] gi|158437044|gb|EDP14811.1| hypothetical protein CLOBOL_05354 [Clostridium bolteae ATCC BAA-613] Length = 394 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 146/358 (40%), Positives = 225/358 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D ++ + +S+ A ++ +G +++V +NP T D +++ Sbjct: 8 NKELLEAMEVLEKEKNISKDTLIEAIENSLLTACKNHFGKADNVKVTVNPNTCDFAVYAE 67 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ ++SL A+ +P +IG V PL FGR+A Q+AK VI+QK+RE Sbjct: 68 KAVVENVEDDCLEMSLADAKMLNPKYEIGDTVQIPLDSKKFGRIATQNAKNVILQKIREE 127 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K ++++G V+R NV ++LG D ++ E + E RP +RVK Y Sbjct: 128 ERKALYNEYYMKEKDVMTGVVQRYLGRNVSINLGRVDAILNESEQVKGETFRPTERVKVY 187 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+V +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 188 VIEVKDTPKGPRVSVSRTHPDLVKRLFESEVAEVRDGTVEIKAIAREAGSRTKIAVKSND 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVGACVG+ GSRV ++V+EL+ EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 248 ANVDPVGACVGLNGSRVNSIVSELKGEKIDIINWDDNPAYLIENALSPAKVICVVADEEE 307 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + Sbjct: 308 REAQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAREMGLFEQMGLQYGDT 365 >gi|148263956|ref|YP_001230662.1| transcription elongation factor NusA [Geobacter uraniireducens Rf4] gi|146397456|gb|ABQ26089.1| NusA antitermination factor [Geobacter uraniireducens Rf4] Length = 383 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 176/353 (49%), Positives = 239/353 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF Sbjct: 4 NFNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEF 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VVEEV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREA Sbjct: 64 VTVVEEVQDSYKEIDLDEAREIDPDVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+ Sbjct: 124 ERETIFNEFQERHGEVINGVVRRFEKGDLVVDLGRAEALLPHKEQAPREVYRQGDRVKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I ++R +GPQ+LLSRTHP + KLF EVPEI GIV++K+V R+PGSRAK+AV+S D Sbjct: 184 ITEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEIKSVVREPGSRAKIAVYSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED Sbjct: 244 SDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDN 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E + F Sbjct: 304 RSMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSETRVAEAELLQFASF 356 >gi|78358201|ref|YP_389650.1| transcription elongation factor NusA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220606|gb|ABB39955.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 429 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 178/406 (43%), Positives = 270/406 (66%), Gaps = 5/406 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL + D ++ ++ +DR +++ + ++++ + YG D+ V N ETG+I +++ Sbjct: 3 MELKKAIDQISKDRGLDRALLIETLEEAVRTSVIRKYGDELDLEVNFNEETGEIEVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V EEVE+ QISL+ AR DPS+ + + L D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVTEEVEDEASQISLEDARAHDPSVQLDDEMGFRLKIEDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y EFKD++ E+ SG ++R + I++LG ++ ++ +DE I RE+ + GDRV++ I Sbjct: 123 QEIIYEEFKDRLNEVASGIIQRRDKTGWIINLGRTEALLPKDEQIPREHYKRGDRVQAII 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +VR+E RGPQV++SR+HP +M LF EVPE+ + VQV V+RDPGSRAK+AV S D Sbjct: 183 IEVRKEGRGPQVVVSRSHPDYMAALFKREVPEVDDETVQVMGVARDPGSRAKVAVTSRDR 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+++++++DE+ Sbjct: 243 DVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSPDIATYARNALSPAVISRIIVDEEEN 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EV+VP +QL+ AIGR+GQNV+LAS+L GW IDI TE R + N + Q Sbjct: 303 MLEVVVPDDQLTNAIGRKGQNVKLASKLLGWKIDIYTET-----RYNEANAIGRGLEQLA 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 +V E+ VA GF+ +EEL E+ ++EG +++ Sbjct: 358 SVAEVPIEQFVAAGFSSIEELRDATDEELMAVEGLTPGKISDLRAA 403 >gi|116872753|ref|YP_849534.1| transcription elongation factor NusA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741631|emb|CAK20755.1| N utilization substance protein A, transcription factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 372 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNGIEAPEVEEAE 363 Query: 368 VDEIIAHL 375 + + Sbjct: 364 SETLTEDE 371 >gi|254824619|ref|ZP_05229620.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-194] gi|254852628|ref|ZP_05241976.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-503] gi|254932363|ref|ZP_05265722.1| transcription elongation factor NusA [Listeria monocytogenes HPB2262] gi|255521785|ref|ZP_05389022.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-175] gi|300765438|ref|ZP_07075420.1| N utilization substance protein A [Listeria monocytogenes FSL N1-017] gi|258605943|gb|EEW18551.1| transcription elongation factor NusA [Listeria monocytogenes FSL R2-503] gi|293583919|gb|EFF95951.1| transcription elongation factor NusA [Listeria monocytogenes HPB2262] gi|293593857|gb|EFG01618.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-194] gi|300513875|gb|EFK40940.1| N utilization substance protein A [Listeria monocytogenes FSL N1-017] gi|328468605|gb|EGF39605.1| transcription elongation factor NusA [Listeria monocytogenes 1816] gi|328475044|gb|EGF45832.1| transcription elongation factor NusA [Listeria monocytogenes 220] gi|332311765|gb|EGJ24860.1| Transcription elongation protein nusA [Listeria monocytogenes str. Scott A] Length = 372 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETYTEDE 371 >gi|282882060|ref|ZP_06290701.1| transcription termination factor NusA [Peptoniphilus lacrimalis 315-B] gi|300813713|ref|ZP_07094033.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298090|gb|EFA90545.1| transcription termination factor NusA [Peptoniphilus lacrimalis 315-B] gi|300512170|gb|EFK39350.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 430 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 159/431 (36%), Positives = 256/431 (59%), Gaps = 4/431 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ + + EK I +D++ + ++ + + YGT ++ V+++ ETG+I LF Sbjct: 2 NQEFIEALNEIEKEKGISKDIIFDALEQALVSSYKKNYGTSQNVIVKMDRETGEIKLFAY 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEVEN +ISL+ A+ D + +G + + P +FGR+A Q+AKQV+IQ++++A Sbjct: 62 KNIVEEVENPEIEISLEDAKKIDINFKLGDNYTKEIHPKNFGRIAAQTAKQVVIQRIKDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + +F K E+++G V+R +GNV VDLG ++G++ +E I E+ + GDR K Sbjct: 122 ERDVIFEDFTKKERELLTGLVQRSNHGNVYVDLGKTEGILLPNEQIKGESYKHGDRYKML 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V++ +GPQV+LSR+HP + +LF +EVPEI GIV++ ++SR+ GSR K+AVFS D Sbjct: 182 LLEVKKSSKGPQVILSRSHPDLIKRLFELEVPEINEGIVEIYSISREAGSRTKIAVFSLD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+GACVG +G RV A+V EL +EKIDIV++ D F+ N+L P+ V KV ++ED Sbjct: 242 PEVDPLGACVGYKGQRVNAIVDELSNEKIDIVIYQKDPQEFIANSLSPSKVEKVFINEDD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 IVP QLSLAIG+ GQNVRLA++LTGW IDI + + +++ + + Sbjct: 302 KSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSMSQYEEYLEEENITEEELEKR- 360 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 E L D + + + SE +E +E+T + I+ + Sbjct: 361 --FSEKKESDLSESDSLDSYDNSNEENSEDLEVEK-NEDTLKSNENIEEVSDNNINNEIT 417 Query: 426 KKIRELGVSEE 436 + S + Sbjct: 418 EDFENDIESND 428 >gi|46907548|ref|YP_013937.1| transcription elongation factor NusA [Listeria monocytogenes serotype 4b str. F2365] gi|46880816|gb|AAT04114.1| N utilization substance protein A [Listeria monocytogenes serotype 4b str. F2365] Length = 372 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETYSEDE 371 >gi|225572728|ref|ZP_03781483.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM 10507] gi|225039901|gb|EEG50147.1| hypothetical protein RUMHYD_00917 [Blautia hydrogenotrophica DSM 10507] Length = 405 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 146/344 (42%), Positives = 226/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + EK+I +D +L + S+ +A ++ YG +++V I+P+T D S++ Sbjct: 2 NTELLGALEILEKEKNISKDTLLDAIEQSLIQACKNHYGKADNVKVSIDPQTCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ +ISL+ A ++G V+ P+ +FGR+A Q+AK VI+QK+RE Sbjct: 62 RTVVEQVEDPVMEISLENALKISARAEVGDVIKVPINSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ K ++++G V+R NV ++LG +D ++ +E + E P +R+K Y Sbjct: 122 ERKVLYNQYYGKEKDVVTGIVQRNLGKNVSINLGKADALLNENEQVKTEVFHPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDTPKGPRILVSRTHPELVKRLFESEVAEVREGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVSELRGEKIDIINWSENPAILIENALSPAKVIAVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KTALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 345 >gi|163791587|ref|ZP_02185988.1| transcription elongation factor NusA [Carnobacterium sp. AT7] gi|159873136|gb|EDP67239.1| transcription elongation factor NusA [Carnobacterium sp. AT7] Length = 425 Score = 348 bits (894), Expect = 9e-94, Method: Composition-based stats. Identities = 149/400 (37%), Positives = 236/400 (59%), Gaps = 4/400 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+ EK I ++ V+ + ++ A + Y ++ VE + + G+I ++ + E Sbjct: 4 EMLNALNALEQEKGIPKEFVIEALEVALISAYKRNYDQAQNVEVEFDLKKGNIHVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + V + ++ L+ A + + + ++G + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VADVVYDSRLEVGLEEALELNKAYELGDKIRFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF +I+ G V+R ++ + V+LG + V+ + E I E +P DR+K Y+ Sbjct: 124 NIIYNEFIAYENDIMQGIVERQDHRYIYVNLGKIEAVLSKQEQIPNEVYKPHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ +SR+HP + +LF EVPEIY+G+V++ +++R+ G RAK+AV S + + Sbjct: 184 KVENTSKGPQIFVSRSHPDLLKRLFEQEVPEIYDGVVEIVSIAREAGDRAKVAVRSREEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG +G RVQA+V EL+ E +DIV W D AT++ NAL PA V V +E G Sbjct: 244 IDPVGTCVGPKGQRVQAIVNELKGENMDIVEWDADPATYIGNALNPAQVVSVTFNEAAGS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE---RTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + + + Sbjct: 304 CLVVVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSETDMAAIQLAKEEAGLVKDAEYAE 363 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 I E + E E + EI I+ EE Sbjct: 364 VIETIESQEQEMNEEEIIQTVEDLDTEFDEIT-IDADIEE 402 >gi|226223923|ref|YP_002758030.1| N utilization substance protein A (NusA protein) [Listeria monocytogenes Clip81459] gi|225876385|emb|CAS05094.1| Putative N utilization substance protein A (NusA protein) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 372 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKVNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVEDAE 363 Query: 368 VDEIIAHL 375 + Sbjct: 364 SETYTEDE 371 >gi|37926540|pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A Structure-Based Role Of The N-Terminal Domain Length = 369 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 1/336 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 30 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 89 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 90 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 149 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 150 KQFEKYSELKGTVTTAEVIRVXGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 209 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 210 VVKTTKGPKILVSRRVPEFVIGLXKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 269 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++ Sbjct: 270 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 329 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 330 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 365 >gi|295110274|emb|CBL24227.1| transcription termination factor NusA [Ruminococcus obeum A2-162] Length = 389 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 147/344 (42%), Positives = 225/344 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++ Sbjct: 2 NKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV E VE+ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 REVKEFVEDPAMEISLVEAQKLNTNAELGDIIKVEIHSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ E+++G V+RV NV V+LG +DGV+ +E + E +P +R+K Y Sbjct: 122 ERKVLYDQYYGMEKEVVTGIVQRVMGKNVSVNLGKADGVLSENEQVKGEEFKPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++LLSRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDTPKGPRILLSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KTALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|229824126|ref|ZP_04450195.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271] gi|229786480|gb|EEP22594.1| hypothetical protein GCWU000282_01430 [Catonella morbi ATCC 51271] Length = 397 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 142/343 (41%), Positives = 213/343 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ + EK I R V+ + ++ A + Y ++ V+ + G I ++ + E Sbjct: 4 ELVKAMQVLEEEKGISRQVIKEALESALALAYKKNYDQAQNVEVQFDENKGTIKVYSVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE + T +ISL+ A + + +IG + + P DFGR+A Q+AK VI+Q++REAER Sbjct: 64 VVETNYDSTLEISLEEALKINRAYEIGDKIKFEVTPKDFGRIATQTAKHVIMQRIREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF V EI++GTV+R ++ + V++G + ++ E I E P R+K Y+ Sbjct: 124 ENIFEEFSQYVDEIMTGTVERQDHRFIYVNIGRVEAIMPLGEQIPSEQFEPDQRIKVYVA 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+++SR H F+ +LF EVPEIY+G V+V A++R+ G RAK+AV S D + Sbjct: 184 KVDKTSKGPQIVVSRAHNDFLRRLFEQEVPEIYDGTVEVMAIAREAGDRAKVAVRSRDKN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG CVG RG RVQA+V EL E +DI+ W+ D F+ NAL PA V KV +E+ Sbjct: 244 IDPVGTCVGPRGQRVQAIVNELNGENMDIIEWNEDPVVFIQNALSPAQVIKVDFNEEAHA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+RGQN RLA++LT + IDI +E + Sbjct: 304 CIVVVPDNQLSLAIGKRGQNARLAARLTTYKIDIKSESSYADY 346 >gi|291550231|emb|CBL26493.1| transcription termination factor NusA [Ruminococcus torques L2-14] Length = 395 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 150/358 (41%), Positives = 232/358 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ D + EK+I +DV+L + +S+ A ++ +GT +I++ ++ T D S++ Sbjct: 2 NTELLEALDILEKEKNISKDVMLEAIENSLLSACKNHFGTSDNIKIVMDRNTCDYSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A +P++ IG + L +FGR+A Q+AK +I+QK+RE Sbjct: 62 REVVEEVFDPAIEISLEDAEKINPALHIGDIAQVELHSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ V+LG +D ++ +E + E+ P +R+K Y Sbjct: 122 ERKAVFDQYFEKEKDIVTGIVQRYIGKNISVNLGKADAILTENEQVKGEHFEPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTPKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 242 PNVDPVGACVGMNGARVNAVVKELRGEKIDIINWDENPALLIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + N Q M Sbjct: 302 KIAGVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIECGDLPENYMEQMGM 359 >gi|290969147|ref|ZP_06560672.1| transcription termination factor NusA [Megasphaera genomosp. type_1 str. 28L] gi|290780653|gb|EFD93256.1| transcription termination factor NusA [Megasphaera genomosp. type_1 str. 28L] Length = 372 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 157/355 (44%), Positives = 224/355 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL ++ EK + DV+ + + A + VE+N ETGD + Sbjct: 2 NKELLNAIAFLSKEKGVSPDVICDSLEAVLITAYKKEPEANPMADVELNRETGDYRIVAA 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EV N +I L AR ++ + +IG +V + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 KTVVAEVTNENEEIVLAEARKQNAAYEIGDMVKVDVTPHNFGRIAAQAAKQVMIQRLREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF ++ +II+G V+R+E V VDLG ++ V+ E I+ E G R+K Y Sbjct: 122 ERSIVYDEFYNRTDDIITGLVQRIENKIVYVDLGKAEAVLPVSEQIAEEQYYVGQRLKCY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ +G Q+L+SRTHP + +LF +EVPEIY+G+V++K+V+R+PG R+K+AVFS D Sbjct: 182 VVEVRKTTKGAQILVSRTHPGLLKRLFELEVPEIYDGVVELKSVAREPGRRSKIAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++D VGACVG +G RVQ +VTEL++EKIDIV W D A ++ NAL PA V V +DE+ Sbjct: 242 TNVDCVGACVGPKGVRVQNIVTELQNEKIDIVKWDEDPAVYIANALSPAQVVSVTIDEEN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 VIVP QLSLAIG+ GQN RLA++LT W IDI +E + KD Sbjct: 302 KMSAVIVPDYQLSLAIGKAGQNARLAAKLTNWKIDIKSESQAKDGNSKDNEGEPD 356 >gi|302387320|ref|YP_003823142.1| transcription termination factor NusA [Clostridium saccharolyticum WM1] gi|302197948|gb|ADL05519.1| transcription termination factor NusA [Clostridium saccharolyticum WM1] Length = 400 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 221/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + E +I +D +L + +S+ A ++ +G +I+V IN ET D ++F Sbjct: 2 NKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNIKVSINRETCDFNVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL A+ DP D+G V+ P+ FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVETVEDPLLQISLAEAKMTDPKYDVGDVIHCPIDSKKFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R + ++ + E+++G V+R NV ++LG D ++ E + E + +R+K + Sbjct: 122 GRKSLFNDWYCQEREVVTGIVQRYLGRNVSINLGKVDAILNETEMVKGEVFKATERIKVF 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 182 VLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +++DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE Sbjct: 242 ANVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEVS 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KEAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARE 345 >gi|157692343|ref|YP_001486805.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032] gi|157681101|gb|ABV62245.1| transcription elongation factor NusA [Bacillus pumilus SAFR-032] Length = 371 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 148/353 (41%), Positives = 229/353 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISVDDAANINPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 VIVP QLSLAIG+RGQN RLA++LT W IDI +E + E ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIFPRTEDSE 356 >gi|291546819|emb|CBL19927.1| transcription termination factor NusA [Ruminococcus sp. SR1/5] Length = 397 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 145/349 (41%), Positives = 222/349 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L D + EK+I +D +L + S+ +A ++ +G ++ V I+PET D S++ Sbjct: 4 DLRDALDVLEKEKNISKDTLLEAIEQSLIQACKNHFGKADNVHVMIDPETCDFSVYADRT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ +ISL A+ + + +IG V+ + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVEHVEDPALEISLVDAQKTNTNAEIGDVMKVEIQSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ E+++G V+RV NV ++LG +D V+ +E + E +P +RVK YI Sbjct: 124 KVLYDQYYGIEKEVVTGIVQRVMGKNVSINLGKADAVLTENEQVKGETFQPTERVKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVRDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVGM G+RV AVV EL EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDAVGACVGMNGARVGAVVNELHGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFYDD 352 >gi|78222794|ref|YP_384541.1| transcription elongation factor NusA [Geobacter metallireducens GS-15] gi|78194049|gb|ABB31816.1| NusA antitermination factor [Geobacter metallireducens GS-15] Length = 381 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 176/366 (48%), Positives = 246/366 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L I D + EK IDRD+V+ + ++ AA Y D+ NPE G++ LF + V Sbjct: 7 LKHIIDQIVKEKGIDRDIVVEALEQAVLSAANKKYRNTRDLEAHYNPEVGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +I L+ AR+ DP +++G + + F R+A Q+AKQVIIQKVREAER+ Sbjct: 67 VDEVMDSYKEIDLEEAREIDPDVEVGDSLGMKMDASGFTRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EFKD++GE+I+G V+R E G+++VDLG ++ ++ E RE R GDR+K+ I D Sbjct: 127 TIFNEFKDRIGELINGVVRRFEKGDLVVDLGRAEALLSNKEQAPREVYRQGDRIKALIMD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PGSR+K+AV+S DS + Sbjct: 187 IRMTPKGPQIILSRTHPGVLAKLFEAEVPEIAEGIVEIKSVVREPGSRSKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL+PA V+KV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDPARFACNALQPAAVSKVYIDEENKAL 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E + +F+ +A Sbjct: 307 EIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSETRAAEAELLEFSSYDGATEEAPQE 366 Query: 369 DEIIAH 374 + Sbjct: 367 PVEESE 372 >gi|197121571|ref|YP_002133522.1| NusA antitermination factor [Anaeromyxobacter sp. K] gi|220916334|ref|YP_002491638.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|196171420|gb|ACG72393.1| NusA antitermination factor [Anaeromyxobacter sp. K] gi|219954188|gb|ACL64572.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 557 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 189/496 (38%), Positives = 274/496 (55%), Gaps = 51/496 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V Sbjct: 9 LILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQVLTIVP 68 Query: 71 EVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM-------------------- 104 + + + + VA ++ ++ G + P+ Sbjct: 69 DPTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRVEDEAEARAQDEQWGDLLKL 128 Query: 105 -----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG Sbjct: 129 KTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLG 188 Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219 ++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF MEVPEI Sbjct: 189 RAEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEMEVPEI 248 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W Sbjct: 249 AEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPW 308 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+TGW + Sbjct: 309 DEDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQVTGWKL 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 DI +E R+ AI + E +L A GF +++A + Sbjct: 369 DINSESRVKEMREFATESF-----GAIGIPEQTQEMLYAHGFRKAQDVANAAPEMLTQFP 423 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRE---------------LGVSEELCSIPGID 444 GF + ++Q RARE + +E L E + G+ Sbjct: 424 GFTMDMIPDLQKRAREQSIEDAEKEMRLEQEREAARIAEARRHPDSLTQEERFARVRGVG 483 Query: 445 SKIKVALGENGIKTME 460 K + G T+E Sbjct: 484 EKTIEQMKLAGYPTVE 499 >gi|322418688|ref|YP_004197911.1| NusA antitermination factor [Geobacter sp. M18] gi|320125075|gb|ADW12635.1| NusA antitermination factor [Geobacter sp. M18] Length = 397 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 172/350 (49%), Positives = 236/350 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHTIDQIVKEKGIDKGIVVEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+ Sbjct: 67 VDEVQDSYREIELDEAREEDPDVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I + Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S D + Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDGDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDIARFACNALAPAVVTKVYVDEEDYAM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356 >gi|86157527|ref|YP_464312.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|85774038|gb|ABC80875.1| NusA antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] Length = 557 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 189/496 (38%), Positives = 274/496 (55%), Gaps = 51/496 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V Sbjct: 9 LILDQVAKDKGIDRAKLIEILEEAIGSAAKRHFGLERNLKARYDEEKGQVDLFQVLTIVP 68 Query: 71 EVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM-------------------- 104 + + + + VA ++ ++ G + P+ Sbjct: 69 DPTEEAPLADPVNMVPVAVAHEKGIDVEPGDELDFPIYYRAEDEAEARAQDEQWGDLLKL 128 Query: 105 -----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG Sbjct: 129 KTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLG 188 Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219 ++ V+ E + RE+ R GDR+++++ DV RE +GPQ++LSR + + KLF MEVPEI Sbjct: 189 RAEAVLPVREQVPRESYRAGDRIQAFVMDVLRESKGPQIILSRASVELLKKLFEMEVPEI 248 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W Sbjct: 249 AEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPW 308 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQ+TGW + Sbjct: 309 DEDPARFVCNALAPAEVSRVLLDEQNRAMEIIVPDDQLSLAIGRRGQNVRLASQVTGWKL 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 DI +E R+ AI + E +L A GF +++A + Sbjct: 369 DINSESRVKEMREFATESF-----GAIGIPEQTQEMLYAHGFRKSQDVANAAPEMLTQFP 423 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRE---------------LGVSEELCSIPGID 444 GF + ++Q RARE + +E L E + G+ Sbjct: 424 GFTMDMIPDLQKRAREQSIEDAEKEMRLEQEREAARIAEARRHPDTLTQEERFARVRGVG 483 Query: 445 SKIKVALGENGIKTME 460 K + G T+E Sbjct: 484 EKTIEQMKLAGYPTVE 499 >gi|49316|emb|CAA79231.1| ORF2 [Bacillus subtilis subsp. subtilis str. 168] Length = 371 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 227/368 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTILEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGSIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS++ A+ P +G VV + P DFGR+A Q+A +V+ Q+VREAER Sbjct: 64 VVDEVYDQRLEISIEEAQGIHPEYMVGDVVEIEVTPKDFGRIAAQTANEVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K YI Sbjct: 124 GVIYSEFIDREEDIMTGIVQRLDNKFIYVSLGKIEALLPVNEQMPNESYKPHDRIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVNWSSDPVEFVANALSPSKVLDVIVNEEEKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARELGIYPRELEEDDEPLFTE 363 Query: 368 VDEIIAHL 375 + + Sbjct: 364 PETAESDE 371 >gi|229552419|ref|ZP_04441144.1| transcription termination factor NusA [Lactobacillus rhamnosus LMS2-1] gi|229314156|gb|EEN80129.1| transcription termination factor NusA [Lactobacillus rhamnosus LMS2-1] Length = 404 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 146/401 (36%), Positives = 228/401 (56%), Gaps = 2/401 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ V+ +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVKFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + +E A Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELSEAEVEAAAA 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ A+V++ + D+ A Sbjct: 364 AAADDQDNASQAPSDSAEVDQANDEADETPVTPSTHDQPQA 404 >gi|260887250|ref|ZP_05898513.1| transcription termination factor NusA [Selenomonas sputigena ATCC 35185] gi|330838993|ref|YP_004413573.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185] gi|260863312|gb|EEX77812.1| transcription termination factor NusA [Selenomonas sputigena ATCC 35185] gi|329746757|gb|AEC00114.1| NusA antitermination factor [Selenomonas sputigena ATCC 35185] Length = 380 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 154/356 (43%), Positives = 233/356 (65%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + L+ A+ E+ ++ +V+ + + ++ A + T +RV ++ TG ++ Sbjct: 13 NDGDFLEAVHALGKERGLEAEVLFAAIEAALSSAYLKDFKTAEQVRVALDRMTGKYHVYA 72 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVEEVE+ QISL AR +P+ ++ + + P FGR+A Q+AKQV++Q +RE Sbjct: 73 TKTVVEEVEDDARQISLADARAVNPNYEVDDKIELEVTPATFGRIAAQTAKQVVVQHIRE 132 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF ++ G+I++G V+RVE NV +DLG ++ V+ E I E GDR+K+ Sbjct: 133 AERGIVYEEFSNRDGDIVTGRVQRVEAKNVFIDLGKTEAVLTATEQIPGEEYHHGDRIKA 192 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +V + +GP+VL+SRTHP + +LF +EVPEI G+V++K+V+R+PG R+K+AV+S Sbjct: 193 YIIEVCKTVKGPRVLVSRTHPGLLKRLFELEVPEIQEGVVEIKSVAREPGMRSKIAVYSK 252 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVG+ VG +G RVQA+V ELR+EKIDIV W+P+ A F+ NAL PA V V ++E+ Sbjct: 253 DENVDPVGSSVGHKGMRVQAIVDELRNEKIDIVKWNPEPAKFIANALSPAKVISVAINEE 312 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+VP QLSLAIG+ GQNVRLA++LTGW IDI EE+ + + + Sbjct: 313 AKESRVVVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKNEEQAAAETLDESMSVIE 368 >gi|258539789|ref|YP_003174288.1| transcription elongation factor NusA [Lactobacillus rhamnosus Lc 705] gi|257151465|emb|CAR90437.1| Transcription elongation factor NusA [Lactobacillus rhamnosus Lc 705] Length = 404 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 147/401 (36%), Positives = 228/401 (56%), Gaps = 2/401 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E + +E A Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELSEAEVEAAAA 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 D+ A+V++ + D+ A Sbjct: 364 AAADDQDNASQAPSDSAEVDQANDEADETPVTPSTHDQPQA 404 >gi|194014307|ref|ZP_03052924.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061] gi|194013333|gb|EDW22898.1| transcription termination factor NusA [Bacillus pumilus ATCC 7061] Length = 371 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 148/353 (41%), Positives = 229/353 (64%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + EK I +++++ + ++ A + + ++RV++N ETG I +F + Sbjct: 4 ELLDALTVLEKEKGISKEIIIEAIEAALISAYKRNFNQAQNVRVDLNRETGTIRVFARKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +IS+ A + +P+ +G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 VVDEVYDSRLEISVDDAANMNPNYMVGDVVEIEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ +E + E+ +P DR+K +I Sbjct: 124 GVIYTEFIDREEDIMTGIVQRIDSKFIYVSLGKIEALLPVNEQMPNEDYKPHDRIKVFIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEIY+G V++K+V+R+ G R+K++V + D Sbjct: 184 KVEKTTKGPQIYVSRTHPGLLKRLFEIEVPEIYDGTVELKSVAREAGDRSKISVRTDDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG+CVG +G RVQA+V EL+ EKIDIV WS D FV NAL P+ V V+++E+ Sbjct: 244 VDPVGSCVGPKGQRVQAIVNELKGEKIDIVHWSNDPVEFVANALSPSKVLDVIVNEEDKA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 VIVP QLSLAIG+RGQN RLA++LT W IDI +E + E ++ Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSETDARELGIFPRTEDSE 356 >gi|199597100|ref|ZP_03210532.1| transcription elongation factor NusA [Lactobacillus rhamnosus HN001] gi|258508610|ref|YP_003171361.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG] gi|199591904|gb|EDY99978.1| transcription elongation factor NusA [Lactobacillus rhamnosus HN001] gi|257148537|emb|CAR87510.1| Transcription elongation factor NusA [Lactobacillus rhamnosus GG] gi|259649917|dbj|BAI42079.1| transcription elongation factor NusA [Lactobacillus rhamnosus GG] Length = 402 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 140/343 (40%), Positives = 213/343 (62%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EI+ G V+R + + V+LG + V+ R + + E DR+K Y+ Sbjct: 124 SIVYDEYSQYEDEILQGVVERRDNRFIYVNLGKIEAVLGRQDQMPNEKYEAHDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTHP + +LF EVPEI++G V++ ++R+ G R K+AV +++ + Sbjct: 184 KVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRATNDA 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--V 305 +D VG VG RG+RVQAVV EL E +D+V W D A ++ NAL PA V V +++ Sbjct: 244 VDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFNDEDND 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQN RLA++LTG+ IDI E E Sbjct: 304 RSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVE 346 >gi|197303044|ref|ZP_03168092.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC 29176] gi|197297899|gb|EDY32451.1| hypothetical protein RUMLAC_01771 [Ruminococcus lactaris ATCC 29176] Length = 397 Score = 346 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 153/400 (38%), Positives = 249/400 (62%), Gaps = 5/400 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK+I +DV++ + +S+ A ++ +GT +I++ ++ ET D S+F Sbjct: 2 NTELLEALTILEKEKNISKDVMMEAIENSLLSACKNHFGTSDNIKIVMDRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A +PS+ IG + P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KEVVEEVFDPAIEISLEDAEKINPSLHIGDIAQVPVYSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ P +R+K Y Sbjct: 122 ERKVVFDQYFEKEKDIVTGIVQRYVGKNISINLGRADAMLTENEQVKGEHFEPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENALSPAKVISVMADPDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + +M+ Sbjct: 302 KVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSET-----QAIESGELPENYMEQ 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + + + + A V ++ IE + + Sbjct: 357 MGMVGEEGYTVGEYDEEEENTEAAVDETDSDEIEFVETDV 396 >gi|302039405|ref|YP_003799727.1| transcription termination factor NusA [Candidatus Nitrospira defluvii] gi|300607469|emb|CBK43802.1| Transcription termination factor NusA [Candidatus Nitrospira defluvii] Length = 379 Score = 346 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 156/364 (42%), Positives = 233/364 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ + D + +K ID+ V+ + ++Q AA+ +G +I+VEI+P+TG+IS+ Sbjct: 2 NRELIAVIDEIGRQKGIDKARVIGAIESALQTAAKKRFGQAENIQVEIDPKTGEISVVSK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V+ V N +ISLK AR+ D ++G + + + GR+A Q+AKQVI QKVREA Sbjct: 62 KIIVDTVANPKAEISLKEAREYDEGAEVGDEIGSLIEMDELGRIAAQTAKQVIFQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E + E+ + G++++G + +E N +VDLG ++ ++ E I RE R GDRVK+ Sbjct: 122 EWEAVQKEYSTRQGDLVNGIILGMERRNFLVDLGKTEAILPIQEQIPRETYRRGDRVKAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VRR + QV+LSR+HPQF+ K+F +EVPE+ IV++K++ R+PG R K+AV S D Sbjct: 182 LLEVRRTPKDVQVILSRSHPQFVAKMFELEVPEVGEKIVEIKSIVREPGDRTKIAVSSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG++GSRVQAVV ELR EKIDI+ W+ D F+ AL PA + KV +DE+ Sbjct: 242 KAVDPVGACVGIKGSRVQAVVRELRGEKIDIITWTQDPRVFIAEALNPATIEKVGIDEEK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E + + + + Sbjct: 302 KSALVVVADSQLSLAIGKNGQNVRLAARLTGWKIDIISATEYEKEKAERDRDIKAALAEE 361 Query: 366 INVD 369 Sbjct: 362 TEAQ 365 >gi|116333944|ref|YP_795471.1| transcription elongation factor NusA [Lactobacillus brevis ATCC 367] gi|116099291|gb|ABJ64440.1| Transcription elongation factor [Lactobacillus brevis ATCC 367] Length = 401 Score = 346 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 153/401 (38%), Positives = 228/401 (56%), Gaps = 4/401 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK ID+ VV+ + ++ A + Y ++ VE + GDI ++ + + Sbjct: 4 ELLGALDVLETEKGIDKQVVIDALEAALVSAYKRNYDQAQNVEVEFDQRKGDIHVYAVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + ++ L A + ++G + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDQVYDSRLEVGLDEALTINKGYELGDDIKFEVTPKNFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++ EI++G V+R + V V LG + V+ R + + E R DRVK Y+ Sbjct: 124 NIIYNQYSQYENEIVTGEVERQDSRFVYVSLGKVEAVMGRQDQMPNETYRIHDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRTH + +LF EVPEIY+G V++ A++R+ G RAK+AV S++ Sbjct: 184 RVENATKGPQVFVSRTHADLLKRLFEQEVPEIYDGTVEIMAIAREAGDRAKVAVRSNNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVG 306 IDPVG VG RG RVQ +V EL E +DIV W+ D A F+ NAL PA V V+ D + Sbjct: 244 IDPVGTSVGPRGQRVQTIVNELGGENMDIVEWTDDEAKFIANALNPAEVLDVIFDPNNER 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 EVIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E S + D + Sbjct: 304 ACEVIVPDYQLSLAIGKRGQNARLAAKLTGYKIDIKSESEASAIMEADQAADEATTGATV 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 + D+ A + + A+ + +E+A Sbjct: 364 SEDDATEP---AAETVADDTTSEETPVNDATTDVASDESAE 401 >gi|255284074|ref|ZP_05348629.1| transcription termination factor NusA [Bryantella formatexigens DSM 14469] gi|255265419|gb|EET58624.1| transcription termination factor NusA [Bryantella formatexigens DSM 14469] Length = 427 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 154/427 (36%), Positives = 243/427 (56%), Gaps = 1/427 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ D + EK+I ++V+L + S+ +A ++ +G +++V+INP+T + S+ Sbjct: 2 NNELMEALDVLEKEKNISKEVLLEAIEQSLLQACKNHFGKADNVKVDINPDTCEFSVHAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL A+ +D ++G VV+ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVEEVEDPVTEISLVDAKMKDSRYEVGDVVNVEIKSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K E+++G V+R NV ++LG D ++ +E + E RP +R+K Y Sbjct: 122 ERKVLYNEYYSKEREVVTGIVQRYLGRNVSINLGKVDAILNENEMVKGETFRPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++K ++R+ G+R K+AV+S+D Sbjct: 182 VLEVKDTPKGPKVLVSRTHPELVKRLFESEVTEVRDGTVEIKCIAREAGNRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ GSRV +V ELR EKIDI+ W + A + NAL PA V V D D Sbjct: 242 PDVDAVGACVGINGSRVNTIVEELRGEKIDIINWDENPALLIENALSPAKVIYVAADNDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + D E +++ Sbjct: 302 KTAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAIEAGDFDEMEEEEYYEDD 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 + + + + E E +E E+ A E D Sbjct: 362 YDEYSDTYADDYSGQYEEGELYEEEPEMTEV-PEDMEEPELTEVPEDAEEAETTGDSESP 420 Query: 426 KKIRELG 432 Sbjct: 421 ADPETEE 427 >gi|153004006|ref|YP_001378331.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|152027579|gb|ABS25347.1| NusA antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 556 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 194/496 (39%), Positives = 277/496 (55%), Gaps = 51/496 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 I D VA +K IDR ++ ++ ++I AA+ +G +++ + E G + LF++L +V Sbjct: 9 LILDQVAKDKGIDRTRLVEILEEAIGSAAKRHFGMERNLKARYDEEKGQVDLFQVLTIVT 68 Query: 71 EVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPM-------------------- 104 + + I + VA ++ ++ G + P+ Sbjct: 69 DPTEETPLADPVNMIPVSVAHEKGIEVEPGDELDFPIYYRTEDEAEARAQDEQWGDLLKL 128 Query: 105 -----DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG 159 FGR+A Q+AKQV+IQ R AER+ + E+KD+ GE+I+G V+R E GNVIVDLG Sbjct: 129 KTYRRSFGRIAAQTAKQVMIQGTRNAERENVFNEYKDRKGEVITGIVRRFERGNVIVDLG 188 Query: 160 NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219 ++ V+ E + RE+ R GDR+++Y+ DV RE +GPQ++LSR + KLF MEVPEI Sbjct: 189 RAEAVLPVREQVPRESYRAGDRIQAYVMDVLRESKGPQIILSRASVDLLRKLFEMEVPEI 248 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 G+V ++A +R+PG RAK+AV S DS +DPVGACVGM+GSRVQAVV ELR EKIDIV W Sbjct: 249 AEGVVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPW 308 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A FV NAL PA V++V+LDE +E+IVP +QLSLAIGRRGQNVRLASQLTGW + Sbjct: 309 DDDYARFVCNALAPAEVSRVLLDEQNKAMEIIVPDDQLSLAIGRRGQNVRLASQLTGWKL 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 DI +E R+ AI + E +L A GF +++A + Sbjct: 369 DINSESRVKEMREFATESF-----GAIGIPEATQEMLYAHGFRKAQDVANAASEMLTQFP 423 Query: 400 GFDEETAVEIQGRARE---YLEGIDITLQKKIR------------ELGVSEELCSIPGID 444 GF + E+Q RARE ++ L+++ EL E + G+ Sbjct: 424 GFTMDMIPELQKRAREQSIVDAEKEMRLEQEREAARIAEARRHPDELTQEERFARVRGVG 483 Query: 445 SKIKVALGENGIKTME 460 K L G ++E Sbjct: 484 EKTIEQLKVAGYGSVE 499 >gi|171913143|ref|ZP_02928613.1| transcription elongation factor NusA [Verrucomicrobium spinosum DSM 4136] Length = 417 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 157/409 (38%), Positives = 246/409 (60%), Gaps = 1/409 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + EK IDR ++ + ++ A++ G ++R+EI+P+ G I F L Sbjct: 4 ELKALFEYYEKEKGIDRSKMVDALQSALLAASKKSIGPARELRIEIDPDKGSIRAFARLL 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V + VEN Q+S+K AR G V + P DFGR+A Q+AKQ +Q++REAE+ Sbjct: 64 VSDTVENPFEQLSVKHARKLKADAQPGDEVDIEVTPKDFGRIAAQTAKQTWMQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EFKD+ G+++SGT++R + +V+VDLG +G++ E + E+ GDR++ Y+ Sbjct: 124 ANLYDEFKDRTGDVVSGTIRRFDKSDVVVDLGKFEGIMTSRERVPTEDYTSGDRMRFYVK 183 Query: 188 DVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + RGP+++LSR+HP F+ +LF EV EI + V++ +++R+ G R K+AV S+D Sbjct: 184 AVEKSTSRGPEIILSRSHPNFVRRLFEFEVSEIADRTVEIVSIAREAGYRTKVAVHSADD 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RG+RV+ +V EL +EK+DI+ WS D A F AL+P + + +DED Sbjct: 244 KVDPVGACVGLRGARVKNIVRELNNEKVDIIRWSKDVAEFTKEALKPIKILSIKVDEDHK 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 R+ + V +E+LS AIGR+GQN RL S+L G+ + I +E + + E + Sbjct: 304 RVLLTVSEEELSKAIGRKGQNARLTSRLIGYDLVIEKDEHAAKVFESHVEEAVHRIAADL 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++D IA LV EG +D+ A + +IASI D E A +I + Sbjct: 364 DIDRNIARKLVGEGLSDLSNFADADVDDIASIVDGDTELAQQIVDKVAA 412 >gi|222099941|ref|YP_002534509.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359] gi|221572331|gb|ACM23143.1| N utilization substance protein A [Thermotoga neapolitana DSM 4359] Length = 344 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 141/336 (41%), Positives = 226/336 (67%), Gaps = 1/336 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G+ ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGSSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ T QISL+ A+ DP+ +IG ++ L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VENVEDSTTQISLEEAKKLDPTAEIGSIIKKELDVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++PGD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSDWADIRIGKLETRLPKKEWIPGEEIKPGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PEI NGIV++KA++R+PG R K+AV S++ ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEIENGIVEIKAIAREPGVRTKVAVTSNNPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++ Sbjct: 245 DPIGACIGEGGSRIAAILRELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENRA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|94986976|ref|YP_594909.1| transcription elongation factor NusA [Lawsonia intracellularis PHE/MN1-00] gi|94731225|emb|CAJ54588.1| transcription elongation factor [Lawsonia intracellularis PHE/MN1-00] Length = 440 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 172/430 (40%), Positives = 265/430 (61%), Gaps = 5/430 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + YG D+ V N +TG+I +++ Sbjct: 2 NLELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQF 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + Q+S+ A+ DPS + + L D GR+A QSAKQVIIQ++R+A Sbjct: 62 KIVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ Y E+KD++GEI+SG V+R + G I++LG ++ ++ +DE I +E+ + GDRV+ Sbjct: 122 EQEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGRTEALLPKDEQIPKEHYKRGDRVQGL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ V+RDPGSRAK+ V S + Sbjct: 182 IIDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLSRE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RGSR+Q +V EL E+IDIV+WSP+ T+ NAL PAI++++ +DE Sbjct: 242 RDVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDETE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +EV VP +QL+ AIGR+GQNV+LA++L GW IDI TE + + Q Sbjct: 302 NLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTETRYNESNAVGR-----GLEQV 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +V EI L+ G +E++ E+ G E +++ + Sbjct: 357 ASVAEISIETLLHSGLNTLEQINETSDEELIEKLGISESQVNDLRAAVNFLSTTATVDSN 416 Query: 426 KKIRELGVSE 435 KK +E+ + Sbjct: 417 KKKKEVEAEQ 426 >gi|331090930|ref|ZP_08339772.1| transcription termination factor NusA [Lachnospiraceae bacterium 2_1_46FAA] gi|330405152|gb|EGG84688.1| transcription termination factor NusA [Lachnospiraceae bacterium 2_1_46FAA] Length = 368 Score = 345 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 146/341 (42%), Positives = 225/341 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F Sbjct: 2 NTELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVIMNRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVENVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR+K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSIAREAGSRSKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQ 342 >gi|257413921|ref|ZP_04744677.2| transcription termination factor NusA [Roseburia intestinalis L1-82] gi|257201821|gb|EEV00106.1| transcription termination factor NusA [Roseburia intestinalis L1-82] Length = 425 Score = 345 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 155/413 (37%), Positives = 245/413 (59%), Gaps = 11/413 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 ++S N ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + Sbjct: 18 IMSNN--ELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEF 75 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F+ VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+Q Sbjct: 76 HVFQEKTVVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQ 135 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 K+RE ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P + Sbjct: 136 KIREEERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTE 195 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K YI +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+A Sbjct: 196 RIKVYILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIA 255 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S+D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ Sbjct: 256 VWSNDPDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVI 315 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E Sbjct: 316 ADAEEKSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFLDYENDY 375 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + + D E E + ++ + A E A Sbjct: 376 EEDEYYDEDGGSYEE---------YEDGSAPAEEGYEEDSYETDGAEENNAEA 419 >gi|260589530|ref|ZP_05855443.1| transcription termination factor NusA [Blautia hansenii DSM 20583] gi|260540098|gb|EEX20667.1| transcription termination factor NusA [Blautia hansenii DSM 20583] Length = 384 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 222/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D + Sbjct: 2 NTELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D + Sbjct: 242 PDVDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KSATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|313608989|gb|EFR84731.1| transcription termination factor NusA [Listeria monocytogenes FSL F2-208] Length = 330 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 140/327 (42%), Positives = 215/327 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 244 VDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQA 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334 VIVP QLSLAIG+RGQN RLA++L Sbjct: 304 TTVIVPDYQLSLAIGKRGQNARLAAKL 330 >gi|222055779|ref|YP_002538141.1| NusA antitermination factor [Geobacter sp. FRC-32] gi|221565068|gb|ACM21040.1| NusA antitermination factor [Geobacter sp. FRC-32] Length = 380 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 176/353 (49%), Positives = 238/353 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L D + EK ID+DVVL + ++ AA + D+ NPE G++ LF Sbjct: 4 NFNLKHTIDQIVKEKGIDKDVVLEALEQAVLTAANKKFRNTRDLEAHYNPEIGEVELFEF 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VV+EV++ +I L AR+ DP +++G + + F R+A Q+AKQVIIQKVREA Sbjct: 64 VTVVDEVQDSYKEIDLDEAREIDPEVEVGDSLGMKMDASGFSRIAAQTAKQVIIQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + EF+++ GE+I+G V+R E G+++VDLG ++ ++ E RE R GDRVK+ Sbjct: 124 ERETIFNEFQERQGEVINGVVRRFEKGDLVVDLGRAEALLSHKEQAPREVYRQGDRVKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I ++R +GPQ+LLSRTHP + KLF EVPEI GIV+VK V R+PGSRAK+AV+S D Sbjct: 184 ITEIRMTTKGPQILLSRTHPMMLAKLFEAEVPEIAEGIVEVKNVVREPGSRAKIAVYSHD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+V+KV +DED Sbjct: 244 SDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDVARFACNALAPAVVSKVYVDEDN 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +E++V +QLSLAIG+RGQNVRLA++LTGW IDI +E + F Sbjct: 304 RAMEIVVADDQLSLAIGKRGQNVRLAAKLTGWRIDIKSETRVAEAELLQFASY 356 >gi|95929628|ref|ZP_01312370.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95134325|gb|EAT15982.1| NusA antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 388 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 166/345 (48%), Positives = 240/345 (69%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + D V +K +DRD+++ + ++ AA Y ++ N E G++ LF + VV+E Sbjct: 8 VIDQVVKDKGVDRDILVEALESAVLSAANKKYRNTRELEAHYNTEQGEVELFEFVTVVDE 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V++ +I L+ AR+ DP ++ G + + F R+A Q+AKQVIIQKVREAER+ Y Sbjct: 68 VQDSYKEIDLEEAREIDPDVECGDSLGMKMDSGSFSRIAAQTAKQVIIQKVREAEREGVY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EFKD+VGE+++G V+R E G++IVDLG ++ ++ E + REN R DRV++YI +V+ Sbjct: 128 NEFKDRVGELVNGIVRRYERGDLIVDLGRAEALLPHREQVPRENYRQADRVRAYIAEVKM 187 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GPQ++LSRTHP +++LF EVPEI GIV++ + SR+PGSRAK+AV S D +DPV Sbjct: 188 SPKGPQIILSRTHPSLVIELFKTEVPEISEGIVEIVSCSREPGSRAKIAVVSHDPDVDPV 247 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVGMRGSRVQ VV+ELR EKIDI+ W+PD A F +AL PA V++V +D + +E+I Sbjct: 248 GACVGMRGSRVQNVVSELRGEKIDIIPWTPDMARFACSALAPADVSRVYVDNEEQAMEII 307 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 VP +QLSLAIG++GQNVRLA++L GW IDI +E + Q++ Sbjct: 308 VPDDQLSLAIGKKGQNVRLAARLIGWKIDIKSETRAAEIEQEENR 352 >gi|310658997|ref|YP_003936718.1| transcription translation coupling factor [Clostridium sticklandii DSM 519] gi|308825775|emb|CBH21813.1| transcription translation coupling factor involved in Rho-dependent transcription termination [Clostridium sticklandii] Length = 357 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 230/355 (64%), Gaps = 12/355 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + EK I ++++ + ++ A + +GT S++RVE++ + G++ +F Sbjct: 2 NAEFIAALEQIETEKGISKEILFEALESALLNAYKKNFGTSSNVRVEMDKDKGEVKVFSR 61 Query: 66 LEVVEEVENY--TCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV + E +IS++ A++R P+ G V+ + + P +FGR+A Q+A+Q++IQK+ Sbjct: 62 KSVVNKYEYDLGEGEISVEEAQERYGPNYGDGDVIEEEVTPKNFGRIAAQAARQMVIQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISR 173 +EAERD Y EF ++ EII+G V R GNV V+L +++ V+ E I Sbjct: 122 KEAERDIVYEEFLNRESEIITGEVSRQGKGNVYVNLSIIGSKDITISAEAVLPPSEQIPF 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 EN PG RVK Y+ +V++ PQ+L+SR+HP + +LF EVPEI++G+VQ+K++SR+ Sbjct: 182 ENYMPGARVKVYVLEVKKNNNVPQILVSRSHPGLVKRLFESEVPEIFDGVVQIKSISREA 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSR K+AV S D ++DP+GACVG +G RV+ +V EL+ EKIDI+++S D F+ +L P Sbjct: 242 GSRTKMAVHSVDENVDPIGACVGPKGQRVKNIVDELKGEKIDIIIYSEDPKEFISASLSP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + V V ++ED +V+VP ++LSLAIG+ GQN RLA++LTGW IDI +E + Sbjct: 302 SKVISVDVNEDDKSAKVVVPDDKLSLAIGKEGQNARLAAKLTGWKIDIKSESQAE 356 >gi|39996686|ref|NP_952637.1| transcription elongation factor NusA [Geobacter sulfurreducens PCA] gi|39983567|gb|AAR34960.1| N utilization substance protein A [Geobacter sulfurreducens PCA] gi|298505697|gb|ADI84420.1| transcription elongation factor NusA [Geobacter sulfurreducens KN400] Length = 385 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 173/350 (49%), Positives = 244/350 (69%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L I D + EK IDR +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHIIDQIVKEKGIDRHIVVEALEQAVLTAANKKFRNTRDLEAHYNPEVGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ +I ++ AR+ DP +++G + L F R+A Q+AKQVIIQKVREAER+ Sbjct: 67 VDEVQDSYKEIDMEEAREIDPDVEVGDSLGMKLDASGFTRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EFKD++GE+++G V+R E G++++DLG ++ V+ E RE R GDRVK+ I D Sbjct: 127 TIFNEFKDRIGELVTGVVRRFEKGDLVIDLGRAEAVLSHKEQAPREVYRQGDRVKTLITD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++KAV R+PGSRAK+AV+S DS + Sbjct: 187 IRMTPKGPQIVLSRTHPGVLAKLFEAEVPEIAEGIVEIKAVVREPGSRAKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D+A F NAL+PA+V+KV +D++ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSDDAARFACNALQPAVVSKVYIDDENRSM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 E+IV +QLSLAIG++GQNVRLA++LTGW IDI +E + ++ Sbjct: 307 EIIVADDQLSLAIGKKGQNVRLAAKLTGWRIDIKSETTAAEAELLQYSSY 356 >gi|302670327|ref|YP_003830287.1| transcription termination factor NusA [Butyrivibrio proteoclasticus B316] gi|302394800|gb|ADL33705.1| transcription termination factor NusA [Butyrivibrio proteoclasticus B316] Length = 384 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 134/351 (38%), Positives = 215/351 (61%), Gaps = 3/351 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ D + EK+I +D + + +S+ A ++ +G +IRVE++ D + E Sbjct: 4 ELMDALDLLEKEKNISKDSLFDAIENSLITACKNNFGKADNIRVEVDRNNCDFKCYADKE 63 Query: 68 VVE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE +V + +ISL A+ +G +V+ L +FGR+A Q+AK VI+QK+RE Sbjct: 64 VVETADDVMDPQIEISLDDAKKISKKAKVGDIVAVSLNSKEFGRIATQNAKNVILQKIRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER Y E+ +K +I++G V+R N+ ++LG +D ++ +E + E RP R++ Sbjct: 124 EERGAIYNEYFEKEHDIVTGVVQRFIGKNISINLGRADAILNENEQVKGEVYRPTQRLRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++L+SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S+ Sbjct: 184 YVLEVKNGSKGPRILVSRTHPDLVKRLFEQEVAEIQDGTVEIKSIAREAGSRTKIAVYST 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++D VGACVG+ G+RV +V EL EKID++ W + + NAL PA + V D D Sbjct: 244 NPNVDAVGACVGVNGARVNLIVDELGGEKIDVINWDENPGNLIQNALSPAKIVAVFADPD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 EKSAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAKDAPGFRM 354 >gi|253701581|ref|YP_003022770.1| transcription elongation factor NusA [Geobacter sp. M21] gi|251776431|gb|ACT19012.1| NusA antitermination factor [Geobacter sp. M21] Length = 382 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 174/350 (49%), Positives = 237/350 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+ Sbjct: 67 VEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I + Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS + Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEYAM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356 >gi|323485570|ref|ZP_08090915.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum WAL-14163] gi|323692918|ref|ZP_08107141.1| transcription termination factor NusA [Clostridium symbiosum WAL-14673] gi|323401109|gb|EGA93462.1| hypothetical protein HMPREF9474_02666 [Clostridium symbiosum WAL-14163] gi|323503025|gb|EGB18864.1| transcription termination factor NusA [Clostridium symbiosum WAL-14673] Length = 412 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 155/412 (37%), Positives = 242/412 (58%), Gaps = 14/412 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + E +I +D++L + +S+ A ++ +G +++V IN ETGD S++ Sbjct: 2 NKELIEALNVLEKENNISKDILLEAIENSLLTACKNHFGKADNVKVTINRETGDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL A+ + D+G +V + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVESVEDPMLQISLAEAKMMNGRYDLGDIVHVQINSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ K ++++G V+R N+ +DLG D ++ E + E +P +R+K Y Sbjct: 122 ERKALFNDWYCKEKDVVTGIVQRYVNRNICIDLGKIDAILNESEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV+S++ Sbjct: 182 VLEVKDTNKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVYSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV A+V+ELR EKIDI+ W + A + NAL PA V V DED Sbjct: 242 PDVDPVGACVGLNGARVNAIVSELRGEKIDIINWDENPAYLIENALSPAKVIFVAADEDA 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-------------DSINRQ 352 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARESGLLDDLELGYEQGFE 361 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E F + DE A F DV + A + E E + E+ Sbjct: 362 GYAEEPFDSFSEEAGADENHAEEDGTAAFGDV-DFAGNEAEEGLGEENYQEQ 412 >gi|210612465|ref|ZP_03289323.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787] gi|210151573|gb|EEA82580.1| hypothetical protein CLONEX_01524 [Clostridium nexile DSM 1787] Length = 373 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 156/372 (41%), Positives = 235/372 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I ++ +L + +S+ A ++ +G +I+V +N ET D S+F Sbjct: 2 NTELLEALTILEQEKDISKETLLDAIENSLINACKNHFGKADNIKVVMNRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEEVEDDVMEISLANAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K++SR+ GSR K+AV+S+D Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKEGIVEIKSISREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V+ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVSELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMNLSTEVS 361 Query: 366 INVDEIIAHLLV 377 DE I LV Sbjct: 362 EEADEEIPDELV 373 >gi|295396943|ref|ZP_06807065.1| transcription termination factor NusA [Aerococcus viridans ATCC 11563] gi|294974796|gb|EFG50501.1| transcription termination factor NusA [Aerococcus viridans ATCC 11563] Length = 447 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 156/443 (35%), Positives = 248/443 (55%), Gaps = 4/443 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ +A+ EK I ++V+L + ++ A + Y ++ V + + G I ++ + E Sbjct: 4 EMLRAFEALEDEKGISKEVILEALEAALVSAYKRNYQQAQNVEVNFDVKKGSIEVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + ++SL+ A + + +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDLVMDSQLEVSLEDAHHLNSAYEIGDKIKFEVTPKDFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D +I++G V+R + V V LG + VI + I E +P +RV+ Y+ Sbjct: 124 SIIYNEYIDYEDDILTGIVERQDRRYVYVSLGKIEAVIPPEGQIPNETFQPHERVQVYVE 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF EVPEI++G V++KA++R+ G R+K+AV S+D++ Sbjct: 184 RVENTTKGPQVYVSRSHPSLLKRLFEQEVPEIFDGTVEIKAIAREAGDRSKVAVVSNDAN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VG CVG RGSRVQ +V EL+ E +DIV WS D ATF+ NAL PA V V Sbjct: 244 IDAVGTCVGPRGSRVQRIVDELKGENMDIVQWSDDMATFISNALNPADVLSVHFVPGETS 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN--ERTQFFMQA 365 V+VP+ LSLAIG+RGQN RLA++LT IDI +E + Q + + + Sbjct: 304 CVVVVPENHLSLAIGKRGQNARLAAKLTNHKIDIKSEADFEAYIQTEEYAERFAEKVLVD 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +VD I+A + + +V I E + D E + ++ ++ Sbjct: 364 EDVDPILAGDIESAEEYEVVTEGSTSIDEEDLLAMDDLEEGNVGPEAIEDQIDDVEGEDN 423 Query: 426 KKIRELGV--SEELCSIPGIDSK 446 I + + E+L ++ + Sbjct: 424 DIIDDEALIGEEDLDQQERLNQE 446 >gi|291536069|emb|CBL09181.1| transcription termination factor NusA [Roseburia intestinalis M50/1] Length = 402 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 153/403 (37%), Positives = 239/403 (59%), Gaps = 9/403 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 3 NNELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQE 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL A+ + +IG VV+ + +FGR+A Q+AK VI+QK+RE Sbjct: 63 KTVVETVEDPVEQISLVNAKMINSKYEIGDVVNIEVQSKEFGRIATQNAKNVILQKIREE 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K Y Sbjct: 123 ERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 183 ILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSND 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 243 PDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + Sbjct: 303 KSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFLDYENDYEEDEY 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + D E E +G +E A Sbjct: 363 YDEDGGSYEE---------YEDGSAPAEESYETDGAEENNAEA 396 >gi|242278479|ref|YP_002990608.1| transcription elongation factor NusA [Desulfovibrio salexigens DSM 2638] gi|242121373|gb|ACS79069.1| NusA antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 456 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 170/434 (39%), Positives = 269/434 (61%), Gaps = 5/434 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ + YG DI V N + G+I +++ Sbjct: 4 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQFKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEVE+ +I+L+ A++ DP++ I + L D GR+A QSAKQVIIQ++R+AE+ Sbjct: 64 VAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRDAEQ 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EFK+++ EI+SG ++R + I++LG ++ V+ + E I RE + GDRV+++I Sbjct: 124 EIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGRTEAVLPKGEQIPRERYKRGDRVQAFII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++E RGPQ+ +SR+HP +M LF EVPE+ + V++ V+RDPG RAK+AV S D Sbjct: 184 DVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNSLDRD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q +V ELR E+IDIVVWS D A + NAL PA++T++ +DE+ Sbjct: 244 VDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDEEEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QL++AIGR+GQNV+LAS+L GW ID+ TE R + N ++ Q + Sbjct: 304 LEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFTES-----RYGEMNAASKGLDQLAS 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V EI ++ GF V ++A + SI G +++ G ++ Sbjct: 359 VAEIPVDNFLSAGFETVSQVANASEEILMSISGMTPSKVSDMKSAIMLLGIGDAEDAVEE 418 Query: 428 IRELGVSEELCSIP 441 E + Sbjct: 419 TETEAPVEAEAQVE 432 >gi|197117688|ref|YP_002138115.1| transcription elongation factor NusA [Geobacter bemidjiensis Bem] gi|197087048|gb|ACH38319.1| transcription termination factor NusA [Geobacter bemidjiensis Bem] Length = 383 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 174/350 (49%), Positives = 237/350 (67%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L D + EK ID+ +V+ + ++ AA + D+ NPE G++ LF + V Sbjct: 7 LKHTIDQIVKEKGIDKSIVVEALEQAVLTAANKKFRNTRDLEAHYNPEEGEVELFEFVTV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +I L AR+ DP ++IG + + F R+A Q+AKQVIIQ+VREAER+ Sbjct: 67 VEEVQDSYREIELDEAREEDPEVEIGDSIGMKMDASGFSRIAAQTAKQVIIQRVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF ++ GEI++G V+R E G++IVDLG ++ ++ E RE R GDRVK+ I + Sbjct: 127 TIFNEFMERQGEIVNGVVRRFEKGDLIVDLGRAEALLPHKEQAPREVYRQGDRVKALITE 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GPQ++LSRTHP + KLF EVPEI GIV++K+V R+PG RAK+AV+S DS + Sbjct: 187 IRMTTKGPQIMLSRTHPTMLAKLFEAEVPEIAEGIVEIKSVVREPGGRAKIAVYSHDSDV 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA+VTKV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALAPAVVTKVYVDEEEYAM 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 EVIV +QLSLAIG+RGQNVRLA++LTGW IDI +E + + F Sbjct: 307 EVIVADDQLSLAIGKRGQNVRLAAKLTGWKIDIKSETRMAEAELQQFASY 356 >gi|188586067|ref|YP_001917612.1| NusA antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350754|gb|ACB85024.1| NusA antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 380 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 142/356 (39%), Positives = 230/356 (64%), Gaps = 1/356 (0%) Query: 18 YEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTC 77 +K I++D++ + ++ A + + + ++RV + ETGD+ ++ +VVEEVEN Sbjct: 14 RDKGINKDILFEAIEAALISAYKRNFDSDKNVRVHMERETGDVRVYHQKQVVEEVENPKE 73 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL+ AR P ++ +V + + P +FGR+A Q+AKQV+IQ++REAER+ Y E+ DK Sbjct: 74 QISLEEARKISPGYEVDDLVEEEVTPKNFGRIAAQTAKQVVIQRIREAERELIYEEYVDK 133 Query: 138 VGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +II+G V+R+E NVI+DLG + ++ E + + GDR+K+Y+ +V++ + PQ Sbjct: 134 QDDIINGIVQRIEQKNVIIDLGKVEAILPPQEQMDTDEYNQGDRIKAYVVEVKKTTKEPQ 193 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 ++LSRTHP + +L +EVPEIY+G V++K ++R+ G R+K+AV+S +DPVG+CVG Sbjct: 194 IILSRTHPGLIKRLLELEVPEIYDGTVEIKGIAREAGYRSKVAVYSRHEEVDPVGSCVGN 253 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQ 316 +GSR+Q++V EL+ E ID++ WS D F+ N+L P+ V +V + DE + V+VP Q Sbjct: 254 KGSRIQSIVDELKGENIDVITWSSDPVVFISNSLSPSKVLEVKVLDEQDQKARVVVPDHQ 313 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 LSLAIG+ GQN RLA++LT W IDI++E + + + A + Sbjct: 314 LSLAIGKEGQNARLAAKLTNWKIDILSESQLAEKGESSVEVEDFVEESASPEEPDN 369 >gi|170288839|ref|YP_001739077.1| NusA antitermination factor [Thermotoga sp. RQ2] gi|281412459|ref|YP_003346538.1| NusA antitermination factor [Thermotoga naphthophila RKU-10] gi|170176342|gb|ACB09394.1| NusA antitermination factor [Thermotoga sp. RQ2] gi|281373562|gb|ADA67124.1| NusA antitermination factor [Thermotoga naphthophila RKU-10] Length = 344 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 1/336 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIRVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTSEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|15644522|ref|NP_229574.1| transcription elongation factor NusA [Thermotoga maritima MSB8] gi|16975175|pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima gi|4982355|gb|AAD36840.1|AE001815_14 N utilization substance protein A [Thermotoga maritima MSB8] Length = 344 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 140/336 (41%), Positives = 223/336 (66%), Gaps = 1/336 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|189219874|ref|YP_001940515.1| transcription elongation factor [Methylacidiphilum infernorum V4] gi|189186732|gb|ACD83917.1| Transcription elongation factor [Methylacidiphilum infernorum V4] Length = 441 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 161/412 (39%), Positives = 259/412 (62%), Gaps = 2/412 (0%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A E+L I + + EK I+R V + M ++ AA+ G D+RVEI+P+TG I++ Sbjct: 23 AMNQEVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVR 82 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 LEVVE+V+N QISLK AR+ DP+++IG +V + P DFGR+A Q KQ I Q ++ Sbjct: 83 AKLEVVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALK 142 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ER EFKD++ I+SGT++R+E ++I+DLG +G++ E + E G+R+K Sbjct: 143 GIERKMVLSEFKDRINNIVSGTIRRIERSDIIIDLGRYEGIMPFKERVPTEEYVVGERIK 202 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V GP ++LSR+HP F+++L +EV E+ + IV+VKA++R+PG R K+AV+S Sbjct: 203 AYVLSVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWS 262 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ IDPVG+CVG+RG+RV+ +V EL EKID+ WSP+ I AL+PA V KV +D+ Sbjct: 263 SNPKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQ 322 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 R++V V +E S+A+G++G+N LAS++ GW IDI+ E ++ + M Sbjct: 323 QNHRVKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQKITKAAEEM 382 Query: 364 -QAINVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVEIQGRA 413 ++ +D+ +A +V GF + E +A + + ++++ D + ++ A Sbjct: 383 ASSLAIDQSVAEQIVRAGFINPEAVAESEEEDLMSALPELDPQLIHRLKEAA 434 >gi|317500433|ref|ZP_07958657.1| transcription termination factor NusA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089560|ref|ZP_08338459.1| transcription termination factor NusA [Lachnospiraceae bacterium 3_1_46FAA] gi|316898188|gb|EFV20235.1| transcription termination factor NusA [Lachnospiraceae bacterium 8_1_57FAA] gi|330404928|gb|EGG84466.1| transcription termination factor NusA [Lachnospiraceae bacterium 3_1_46FAA] Length = 404 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 233/356 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++ Sbjct: 2 NTELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KNVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y Sbjct: 122 ERKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D + Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N + Sbjct: 302 KIASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMEEM 357 >gi|302392348|ref|YP_003828168.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501] gi|302204425|gb|ADL13103.1| NusA antitermination factor [Acetohalobium arabaticum DSM 5501] Length = 376 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 162/369 (43%), Positives = 248/369 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL+Q + + +K+I ++++L + +++ A + +G+ ++ +EI+ E G+++++ Sbjct: 2 NIELIQALEDIEKDKNIPKEMLLDALKAALESAYKKNFGSKQNVEIEIDEENGEVNVYSN 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV+N ++SL+ AR+ DP+ + G VVS + P +FGR+A Q+AKQV+IQ++REA Sbjct: 62 REVVKEVDNPNLEMSLEEAREIDPNYEAGDVVSVEVTPANFGRIAAQTAKQVVIQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD Y EF D EII+G ++R NVIVDLG ++ ++ E I EN P +R+K Y Sbjct: 122 ERDIIYEEFADMEDEIITGIIQRNHKKNVIVDLGRTEAILIPPEQIPNENYEPSERIKIY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V++ +GP +L+SRTHP + +LF +EVPEI++G+V++KAV+R+ G R+K+AV S++ Sbjct: 182 IVEVKQTTKGPNILVSRTHPGLLKRLFELEVPEIHDGVVKIKAVAREAGFRSKIAVDSTE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 + +DP+G+CVG G RVQAVV EL EKIDIV WS D A F+ NAL PA VT V +DE+ Sbjct: 242 AEVDPIGSCVGPNGMRVQAVVDELNGEKIDIVNWSEDPAEFIANALSPAEVTGVEVDEEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LTGW IDI +E E + ++ + Sbjct: 302 QVAVVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESEVDEEILESMDDVETDGEEG 361 Query: 366 INVDEIIAH 374 N D Sbjct: 362 SNFDFTEVD 370 >gi|238854742|ref|ZP_04645072.1| transcription termination factor NusA [Lactobacillus jensenii 269-3] gi|260663974|ref|ZP_05864827.1| transcription termination factor NusA [Lactobacillus jensenii SJ-7A-US] gi|282932867|ref|ZP_06338264.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|313472265|ref|ZP_07812757.1| transcription termination factor NusA [Lactobacillus jensenii 1153] gi|238832532|gb|EEQ24839.1| transcription termination factor NusA [Lactobacillus jensenii 269-3] gi|239529661|gb|EEQ68662.1| transcription termination factor NusA [Lactobacillus jensenii 1153] gi|260561860|gb|EEX27829.1| transcription termination factor NusA [Lactobacillus jensenii SJ-7A-US] gi|281302902|gb|EFA95107.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] Length = 368 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 134/365 (36%), Positives = 217/365 (59%), Gaps = 2/365 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I +++++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDARLEVSLKEALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++G V+R + V V + + V+ R + + E P D+++ + Sbjct: 124 NHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D + Sbjct: 184 KVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA V + DED Sbjct: 244 IDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + + + N+ Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNDENVGDENP 363 Query: 366 INVDE 370 N +E Sbjct: 364 TNNEE 368 >gi|153814921|ref|ZP_01967589.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756] gi|145847952|gb|EDK24870.1| hypothetical protein RUMTOR_01136 [Ruminococcus torques ATCC 27756] Length = 404 Score = 343 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 234/356 (65%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL++ + EK+I +DV++ + +S+ A ++ +GT +I+V ++ +T D +++ Sbjct: 2 NIELMEALTILEKEKNISKDVMMDAIENSLISACKNHFGTSDNIKVIMDRDTCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL+ A D ++ +G + P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KNVVEEVEDPALEISLEEAEKLDSALQVGDIAQIPVHSKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ +K +I++G V+R N+ ++LG +D ++ +E + E+ +P +R+K Y Sbjct: 122 ERKVVFDQYFEKEKDIVTGVVQRYVGKNISINLGRADAMLTENEQVKGEHFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVRDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ W + A + N+L PA V V+ D + Sbjct: 242 PNVDPVGACVGMNGARVNAVVQELRGEKIDIINWDENPALLIENSLSPAKVISVMADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + N + Sbjct: 302 KIASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGELPENYMEEM 357 >gi|325265380|ref|ZP_08132104.1| transcription termination factor NusA [Clostridium sp. D5] gi|324029381|gb|EGB90672.1| transcription termination factor NusA [Clostridium sp. D5] Length = 407 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 147/364 (40%), Positives = 235/364 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D ++ + +S+ A ++ +GT +I+V ++ ET D +++ Sbjct: 2 NTELLEALNILEQEKNISKDTMMDAIENSLISACKNHFGTAENIKVIMDRETCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ A D ++ IG + P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KEVVEEVFDPALEISLEDAEQIDSALQIGDIAQIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGRNISINLGRADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 ENVDPVGACVGMNGARVNAVVNELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Q M Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMEQMAMME 361 Query: 366 INVD 369 + Sbjct: 362 DGYE 365 >gi|218887601|ref|YP_002436922.1| transcription elongation factor NusA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758555|gb|ACL09454.1| NusA antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 443 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 181/428 (42%), Positives = 271/428 (63%), Gaps = 6/428 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 LEL + D ++ +K +DRD+++ + ++++ + +G D V N ETG+I +++ Sbjct: 3 LELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQFK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV++VEN +ISL+ AR DPS+ + + + D GR+A QSAKQVIIQ++R+AE Sbjct: 63 IVVKKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRMRDAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ Y E+KD+ GEI+SG ++R + I++LG ++ ++ ++E I RE+ + GDRV++ + Sbjct: 123 QEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRVQAIL 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 DVR+E RGPQV++SR H +M LF EVPE+ +G VQ+ VSRDPGSRAK AV S D Sbjct: 183 IDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAVMSRDR 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVG+RGSR+Q +V E+R E+IDIVVWSPD AT+ NAL PA+++++V+DE+ Sbjct: 243 DVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVVDEEEN 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Q Sbjct: 303 LLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRGLEQIA 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 +V EI +A GF +E L E+AS G +++ A +L Sbjct: 358 SVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLRA-AINFLAPQAQDDAD 416 Query: 427 KIRELGVS 434 E Sbjct: 417 ATAEPDAE 424 >gi|313888283|ref|ZP_07821954.1| transcription termination factor NusA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845686|gb|EFR33076.1| transcription termination factor NusA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 411 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 153/417 (36%), Positives = 242/417 (58%), Gaps = 8/417 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK I +++V + ++ + R YGT ++ V ++ ETG+I LF Sbjct: 2 NQEFIDALSEIEKEKGISKEIVFEALESALVSSYRKNYGTSENVIVNMDRETGEIKLFAS 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+VE+ +ISL A+ +P+ +IG V + + P +FGR+A Q+AKQV+IQ++++A Sbjct: 62 KDIVEKVEDPQLEISLDEAKKINPNYEIGDVYNQEIHPKNFGRIAAQTAKQVVIQRIKDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ ++ EII+G V+R Y NV VDLG+++ ++ E IS E+ GDR K Sbjct: 122 ERDIVFDEYVEREKEIITGLVQRKSYNNVYVDLGSTEAILPYSEQISGESYNHGDRYKML 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V + +GPQ++LSR+HP + +LF +E+PE+ GIV++ ++SR+ GSR K+AVFS D Sbjct: 182 ILSVEKSTKGPQIVLSRSHPDLIKRLFELEIPEVSEGIVEIYSISREAGSRTKIAVFSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DP+GACVG +G RV A+V E+ +EKIDIV++ + F+ N+L P+ V KV ++E Sbjct: 242 PEVDPLGACVGYKGQRVNAIVDEIDNEKIDIVIYEKEIDKFIANSLSPSKVEKVFVNEAE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 IVP QLSLAIG+ GQNVRLA++LTGW IDI + + ++ Sbjct: 302 KSALAIVPDYQLSLAIGKEGQNVRLAAKLTGWKIDIKSNLQFEEYLEERNITEEDLI--- 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 V E +V E + I+ ++E ++ E Sbjct: 359 -----EEYENAVKENVEEVSEDLNNPEEQDIKIDDIEDEVCGNLENADEESSVEETE 410 >gi|154506276|ref|ZP_02043014.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149] gi|153793415|gb|EDN75835.1| hypothetical protein RUMGNA_03818 [Ruminococcus gnavus ATCC 29149] Length = 397 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 151/373 (40%), Positives = 236/373 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + EK+I RD ++ + +S+ A ++ +GT +I+V +N ET D +++ Sbjct: 2 NTELMEALTILEKEKNISRDTMMDAIENSLISACKNHFGTSDNIKVIMNRETCDYAVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +I+L+ A + D ++ IG V P+ +FGR+A +AK +I+QK+RE Sbjct: 62 KEVVEEVFDPAIEITLEDAEEIDSALQIGDVCQVPVQSKEFGRIATMNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ V+LG +D ++ +E + E +P DR+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISVNLGKADAMLTENEQVKGEVFKPTDRIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 ENVDPVGACVGMNGARVNAVVEELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + Q M Sbjct: 302 KVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMDQMNMME 361 Query: 366 INVDEIIAHLLVA 378 + V Sbjct: 362 EDGYAEDYEETVN 374 >gi|114566431|ref|YP_753585.1| transcription elongation factor NusA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337366|gb|ABI68214.1| NusA antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 378 Score = 342 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 145/373 (38%), Positives = 233/373 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+Q + + E+ I + ++ + ++ A + +G ++ VE N G++ +F + Sbjct: 4 DLVQALNDIEKERGIPKRALIEAIKSALSTAYKKNFGIAQNVSVEFNEINGEVKVFSQKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 + +EV++ ++SL+ A++ P + +V P DFGR+A Q+AKQV+IQK+REAER Sbjct: 64 ISDEVKDPRLEMSLEEAQELYPDCKVEDLVYVEATPSDFGRIAAQTAKQVVIQKLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF ++ GEII+GT++R+E V + LG ++G++ + I E G R+K+YIY Sbjct: 124 SLIYEEFLEREGEIITGTIQRLESKTVYISLGRTEGIMMASDQIFGERYEVGQRIKAYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP + +SR+HP F+ +LF MEVPEIY+G+V++K+++R+ G+R+K+AV+S D Sbjct: 184 EVKNTSKGPNIFVSRSHPYFLRRLFEMEVPEIYDGVVEIKSIAREAGARSKIAVYSLDDK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG RG RVQ +V+EL EKIDI+ + D ++ NAL P+ V V ++E Sbjct: 244 IDSVGACVGPRGLRVQNIVSELGGEKIDIIKYDKDPERYISNALSPSRVVAVNINETDKI 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+ GQN RLA++LTGW +DI +E + S + E ++ Sbjct: 304 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWKVDIRSESQMSDYYNEIDAEMDDEVLEQDW 363 Query: 368 VDEIIAHLLVAEG 380 +E + E Sbjct: 364 AEENTGETKIDEQ 376 >gi|227510252|ref|ZP_03940301.1| transcription elongation factor NusA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189904|gb|EEI69971.1| transcription elongation factor NusA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 444 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 148/429 (34%), Positives = 230/429 (53%), Gaps = 1/429 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+ Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-G 306 IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D+D Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFDDDNDR 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q + Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQVENEDE 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 + + +D V DE+ + Q + +E + Sbjct: 364 GTTDESETAEPDQETSDDTLGESVDTDSQEVQTESDEDVEADAQDDQSDNVEKQSEHIDD 423 Query: 427 KIRELGVSE 435 + Sbjct: 424 ADSSDHTED 432 >gi|256851259|ref|ZP_05556648.1| transcription termination factor NusA [Lactobacillus jensenii 27-2-CHN] gi|260660683|ref|ZP_05861598.1| transcription termination factor NusA [Lactobacillus jensenii 115-3-CHN] gi|282934727|ref|ZP_06339970.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|297206126|ref|ZP_06923521.1| transcription termination factor NusA [Lactobacillus jensenii JV-V16] gi|256616321|gb|EEU21509.1| transcription termination factor NusA [Lactobacillus jensenii 27-2-CHN] gi|260548405|gb|EEX24380.1| transcription termination factor NusA [Lactobacillus jensenii 115-3-CHN] gi|281301302|gb|EFA93603.1| transcription termination factor NusA [Lactobacillus jensenii 208-1] gi|297149252|gb|EFH29550.1| transcription termination factor NusA [Lactobacillus jensenii JV-V16] Length = 368 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 218/365 (59%), Gaps = 2/365 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I +++++ + ++ A + Y ++ V+++ G+ + + Sbjct: 4 EMLEAFATLETEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVDLDERKGNFKVMAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR++ Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALEINKAYEVGDEIKFEVTPKDFGRISAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++G V+R + V V + + V+ R + + E P D+++ + Sbjct: 124 NHIVSEYSQYQDELVTGVVERHDNRFVYVMIDKVEAVMPRGDQMPNEVYNPQDKIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPE+Y+G VQ+ +V+R+ G R K+AV S D + Sbjct: 184 KVGNDTKGAQIVVSRTAPDMVKRLFEQEVPEVYDGTVQIVSVAREAGDRTKIAVKSDDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D A F+ NAL PA V + DED Sbjct: 244 IDPVGTCVGPKGARVQNVVNELGGENIDIVKYEDDPADFIANALNPAEVIAAQFGEDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E + + + N + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESQVEFVDEDNGNSENAGEEKP 363 Query: 366 INVDE 370 + +E Sbjct: 364 ADNEE 368 >gi|269926028|ref|YP_003322651.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269789688|gb|ACZ41829.1| NusA antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 372 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 159/356 (44%), Positives = 230/356 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R E ++ E+ I RDV++ + ++++ R Y DI V+I+P TG +++R+ Sbjct: 2 RGEFYAAISQLSLERGIPRDVLIKSVEEAVKAVYRKNYDASGDIEVKIDPNTGQATVYRV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L+VVE V++ QISL A+ D IG VV + P FGR+A Q KQV++QK+REA Sbjct: 62 LQVVENVKDPKTQISLADAKKIDKEARIGSVVHQDVTPDTFGRIAAQMTKQVMLQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E + Y EF D+ GE+++G V+RVE G VIV LG ++ ++ + E + EN +PG R+K Sbjct: 122 EHETIYKEFGDREGELVTGVVQRVENGLVIVQLGKAEAIMPKAEQVESENYKPGQRLKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+++SR + +LF +EVPEIYNG V++KA++R PG R+K+AV + Sbjct: 182 LLKVVKTPRGPQLIVSRRDKNLLKRLFEIEVPEIYNGSVEIKAIARIPGVRSKIAVAARQ 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVG+CVG+RG+RVQ VV EL+ EKIDI+ WS D ATF+ AL PA V +V+LD++ Sbjct: 242 PGIDPVGSCVGVRGTRVQNVVDELQGEKIDIIQWSDDPATFIARALSPAQVNEVILDKET 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 VIVP++QLSLAIG+ GQN RLA+ LTGW IDI + E + + Sbjct: 302 KTATVIVPEKQLSLAIGKDGQNARLAANLTGWRIDIRSPENVEHFSSSSTSVSEEQ 357 >gi|291519298|emb|CBK74519.1| transcription termination factor NusA [Butyrivibrio fibrisolvens 16/4] Length = 393 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 145/348 (41%), Positives = 218/348 (62%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++AN + + +A EK+I DV++ + +S+ A ++ YG + +VEI+ TG+ Sbjct: 1 MAANTNDFWEALTDLAKEKNISMDVLIETIENSLLIACKNNYGKADNAKVEIDKNTGEYH 60 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL A+D +G +V + DFGR+A +AK I QK Sbjct: 61 VYLSKTVVDEVMDPVEEISLSDAQDISGKHQVGDIVQIEVKSKDFGRIAATAAKNTITQK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +RE ER Y E+ + ++++G V R N+ V+LG +G + E + E +P DR Sbjct: 121 IREEERKVLYEEYYELQHKVVTGVVTRFSGNNIHVNLGKLEGFLSETEQVKGEYYKPQDR 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GP++L+SRTHP+ + KLF EV E+ +GIV++K++SR+ GSR K+AV Sbjct: 181 IKVYIVEVKTSNKGPRILVSRTHPELVKKLFEEEVSEVRDGIVEIKSISREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DPVGACVG G+RV A+V ELR EKIDIV W + A + NAL PA V V+ Sbjct: 241 WSNDEDVDPVGACVGQNGARVNAIVNELRGEKIDIVEWDENPAYLIENALSPAKVVAVIA 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D D V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 301 DADEKTARVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKE 348 >gi|284108775|ref|ZP_06386440.1| transcription elongation factor NusA [Candidatus Poribacteria sp. WGA-A3] gi|283829849|gb|EFC34140.1| transcription elongation factor NusA [Candidatus Poribacteria sp. WGA-A3] Length = 404 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 156/368 (42%), Positives = 231/368 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + EL+ + + V EK ID+ VL+ + ++ AA+ YG +I+V+I+PETG+IS+ L Sbjct: 2 KHELMAVIEQVGREKGIDKHRVLAAVESALLTAAKKRYGNNENIQVQIDPETGEISIVSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + +++ + QISL AR D ++G + + +FGR+A Q+AKQVI QKVREA Sbjct: 62 KTIADQITDVNAQISLDEARAIDGEAELGDEIGSLIDVEEFGRIAAQAAKQVICQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G+++ G + E N +V++G ++ V+ E I RE R GDRV++ Sbjct: 122 TWEAVEREYSKREGDLVHGIILGQERRNYLVEIGKTEAVLPVHEQIPREVHRRGDRVRAL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VRR + QV+LSR HPQF+VKLF +EVPE+ I+++K V R+PG R K+AVFS D Sbjct: 182 LLEVRRTPKDVQVILSRAHPQFVVKLFQLEVPEVTEKILEIKGVVREPGDRTKIAVFSKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG++GSRVQA+V EL+ EKIDI+ W+ D F+ AL PA + KV +DE+ Sbjct: 242 KAVDPVGACVGIKGSRVQAIVRELKGEKIDIIPWTTDPRVFIGEALNPASIEKVGIDEEK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+V QLSLAIG+ GQNVRLA++LTGW IDII+ E + + E + Sbjct: 302 KAALVVVADSQLSLAIGKNGQNVRLAAKLTGWKIDIISVSEYEKEKLEREREIKAALAEE 361 Query: 366 INVDEIIA 373 Sbjct: 362 TAAQREQE 369 >gi|301300268|ref|ZP_07206477.1| transcription termination factor NusA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214374|gb|ADJ78790.1| N utilization substance protein A [Lactobacillus salivarius CECT 5713] gi|300852109|gb|EFK79784.1| transcription termination factor NusA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 375 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 226/367 (61%), Gaps = 1/367 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + E Sbjct: 4 ELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ ER Sbjct: 64 VVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K YIY Sbjct: 124 EVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++ Sbjct: 184 KVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDG 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VG 306 +DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V D++ Sbjct: 244 VDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + + Sbjct: 304 ACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADNNDIDDEDQL 363 Query: 367 NVDEIIA 373 D Sbjct: 364 MSDSSSN 370 >gi|90961545|ref|YP_535461.1| transcription elongation factor NusA [Lactobacillus salivarius UCC118] gi|227890633|ref|ZP_04008438.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC 11741] gi|90820739|gb|ABD99378.1| N utilization substance protein A [Lactobacillus salivarius UCC118] gi|227867571|gb|EEJ74992.1| transcription elongation factor NusA [Lactobacillus salivarius ATCC 11741] Length = 375 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 226/367 (61%), Gaps = 1/367 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL +A+ EK + +++V+ + ++ A + YG ++ VE + G+I ++ + E Sbjct: 4 ELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + +ISLK A + + + +IG + + + P DFGR+A Q+AKQVI+Q+VR+ ER Sbjct: 64 VVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ EI++G V+R + V V+LG + V+ R + I E + D++K YIY Sbjct: 124 EVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SR+HP + +LF E+PEI++G V++ ++SR+ G RAK+AV S++ Sbjct: 184 KVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDG 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VG 306 +DPVG CVG RG RVQA+V EL+ E +DIV W D A ++ NAL PA V V D++ Sbjct: 244 VDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEH 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP +QLSLAIG+RGQN RLA++LTG+ IDI +E + + + + + Sbjct: 304 ACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADNNDIDDEDQL 363 Query: 367 NVDEIIA 373 D Sbjct: 364 MSDSSSN 370 >gi|283797337|ref|ZP_06346490.1| transcription termination factor NusA [Clostridium sp. M62/1] gi|291075009|gb|EFE12373.1| transcription termination factor NusA [Clostridium sp. M62/1] gi|295090489|emb|CBK76596.1| transcription termination factor NusA [Clostridium cf. saccharolyticum K10] Length = 408 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 146/393 (37%), Positives = 231/393 (58%), Gaps = 4/393 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + + E +I ++V+ + +S+ A ++ +G +I+V I+ E D +++ E Sbjct: 4 ELFEALNVLEKENNISKEVLFEAIENSLLTACKNHFGRADNIKVYIDREKCDFAVYAEKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ Q+SL A+ DP G +V + +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 VVENVEDPLTQVSLAEAKLMDPRHVYGDIVRVNINSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + + ++++G V+R +V +DLG D V++ E + E +P +K +I Sbjct: 124 TALFDHWYCREKDVVTGIVQRYVGHDVYIDLGKIDAVLKESEQVKGEEFKPTQHIKLFIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ ++GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D + Sbjct: 184 EVKNTKKGPRITVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVASNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+ G+RV +VV+EL EKIDI+ W + A + NAL PA V V DE+ Sbjct: 244 VDPVGACVGLNGARVNSVVSELNGEKIDIINWDDNPALLIENALSPAKVIFVAADEEARE 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + D E Sbjct: 304 AQVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGLFDEMEMGYEQGFEEG 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + E A+ F+D E + S E Sbjct: 364 LPESTQ----ADDFSDYTEPQDAEDSMEEQAEE 392 >gi|291538564|emb|CBL11675.1| transcription termination factor NusA [Roseburia intestinalis XB6B4] Length = 407 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 152/408 (37%), Positives = 240/408 (58%), Gaps = 9/408 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK+I +D +L + +S+ A ++ +G+ +++V I+PET + +F+ Sbjct: 3 NNELLEALNILEQEKNISKDTLLEAIENSLVTACKNHFGSSDNVKVSIDPETCEFHVFQE 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL A+ + +IG V + + +FGR+A Q+AK VI+QK+RE Sbjct: 63 KTVVETVEDPVEQISLVNAKMINSKYEIGDVANIEVQSKEFGRIATQNAKNVILQKIREE 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ ++++G V+R NV ++LG D ++ +E + E +P +R+K Y Sbjct: 123 ERKVLYDQYYSMEKDVVTGVVQRYVGRNVSINLGRVDAILTENEQVKGEVFQPTERIKVY 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP+VL+SRTHP+ + +LF EV E+ GIV++KA++R+ GSR K+AV+S+D Sbjct: 183 ILEVKATSKGPKVLVSRTHPELVKRLFESEVAEVREGIVEIKAIAREAGSRTKIAVWSND 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D + Sbjct: 243 PDVDPVGACVGMNGARVNAIVGELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEE 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + Sbjct: 303 KSAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFLDYENDYEEDEY 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 + D E E + ++ + A E A Sbjct: 363 YDEDGGSYEE---------YEDGSAPAEEGYEEDSYETDGAEENNAEA 401 >gi|254974853|ref|ZP_05271325.1| transcription elongation protein [Clostridium difficile QCD-66c26] gi|255092240|ref|ZP_05321718.1| transcription elongation protein [Clostridium difficile CIP 107932] gi|255313980|ref|ZP_05355563.1| transcription elongation protein [Clostridium difficile QCD-76w55] gi|255516660|ref|ZP_05384336.1| transcription elongation protein [Clostridium difficile QCD-97b34] gi|255649759|ref|ZP_05396661.1| transcription elongation protein [Clostridium difficile QCD-37x79] gi|260682915|ref|YP_003214200.1| transcription elongation protein [Clostridium difficile CD196] gi|260686513|ref|YP_003217646.1| transcription elongation protein [Clostridium difficile R20291] gi|306519864|ref|ZP_07406211.1| transcription elongation protein [Clostridium difficile QCD-32g58] gi|260209078|emb|CBA62223.1| transcription elongation protein [Clostridium difficile CD196] gi|260212529|emb|CBE03480.1| transcription elongation protein [Clostridium difficile R20291] Length = 384 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 148/348 (42%), Positives = 229/348 (65%), Gaps = 2/348 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVKS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 D VIVP QLSLAIG+ GQN RLA++LT W IDI +E + Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEM 349 >gi|225570594|ref|ZP_03779619.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM 15053] gi|225160607|gb|EEG73226.1| hypothetical protein CLOHYLEM_06696 [Clostridium hylemonae DSM 15053] Length = 397 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 147/396 (37%), Positives = 238/396 (60%), Gaps = 1/396 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ ET D +F Sbjct: 2 NTELLEALNILEKEKDISKETLLDAIENSLLNACKNHFGKADNIKVIMDRETCDYKVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEVE+ QISL+ AR+ D + ++G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTAVEEVEDDLEQISLEDAREIDSTFELGDIVQIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGTVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV +V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNTIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPENYMELSEGVY 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + E E + + + + ++ E Sbjct: 362 EEEMYEDDFDGEYTEEYPEDYDDGAAEDIDVTDTEE 397 >gi|255655319|ref|ZP_05400728.1| transcription elongation protein [Clostridium difficile QCD-23m63] gi|296451304|ref|ZP_06893044.1| transcription termination factor NusA [Clostridium difficile NAP08] gi|296880344|ref|ZP_06904307.1| transcription termination factor NusA [Clostridium difficile NAP07] gi|296259910|gb|EFH06765.1| transcription termination factor NusA [Clostridium difficile NAP08] gi|296428585|gb|EFH14469.1| transcription termination factor NusA [Clostridium difficile NAP07] Length = 384 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 148/348 (42%), Positives = 229/348 (65%), Gaps = 2/348 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 D VIVP QLSLAIG+ GQN RLA++LT W IDI +E + Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEM 349 >gi|323464620|gb|ADX76773.1| transcription termination factor NusA [Staphylococcus pseudintermedius ED99] Length = 392 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 155/388 (39%), Positives = 234/388 (60%), Gaps = 1/388 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+ Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ-AI 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + + T A+ Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAKALGIGEKETTTVETEPVAM 364 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE 394 +E+ E D L Sbjct: 365 TAEELDLEATTDEHIEDNASLEDESKEN 392 >gi|164688521|ref|ZP_02212549.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM 16795] gi|164602934|gb|EDQ96399.1| hypothetical protein CLOBAR_02166 [Clostridium bartlettii DSM 16795] Length = 384 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 236/383 (61%), Gaps = 2/383 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RV ++ E G++ ++ Sbjct: 2 NHEFMEALDELEKDRGIDKEIIIDTIEQALLTAYKKNFGSAQNVRVSVDREGGEVRVYSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L A DPS ++G ++ + + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RRVVDESDLYDTFLEIELADAIKIDPSYELGDIIENEVTPKEFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G + R V V++G + + +E I E + G ++K Sbjct: 122 EAEREIVYNEFIEKESEIVTGEIARATSKTVYVNVGKIEASMPENEQIPGEVYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF M+V EI+ GIVQ+K+VSR+ GSR K+AV S Sbjct: 182 VYILEVKKTNKGPQIVVSRSHPGLVKRLFEMQVVEIFEGIVQIKSVSREAGSRTKIAVQS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +GSRV+AVV EL EKIDI+ +S D A F+ AL P+ V KV ++E Sbjct: 242 IDEKIDPIGACVGPKGSRVKAVVDELGGEKIDIINYSEDPAEFISAALSPSKVEKVEINE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V+VP QLSLAIG+ GQN RLA++LT W IDI + + + N + F+ Sbjct: 302 EEKTALVVVPDYQLSLAIGKSGQNARLAAKLTNWKIDIKSVSQMQAEMEAIKNVQDVDFV 361 Query: 364 QAINVDEIIAHLLVAEGFADVEE 386 + + + +E E Sbjct: 362 EEDIELQAQDVDMDSENIDLDAE 384 >gi|269837284|ref|YP_003319512.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269786547|gb|ACZ38690.1| NusA antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 443 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 153/383 (39%), Positives = 234/383 (61%), Gaps = 6/383 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP----ETGDIS 61 + + +A E++I R+ VLS + +++ + + GT ++ V+I+P G I Sbjct: 2 KSDFYTAIATIAAERNIPREAVLSSVEHALRTVYKKMAGTEEEVEVQIDPTLDPNKGGIR 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +F + VVEEVE+ +IS++ AR P +G V+ P +FGR+A Q+AKQV++Q+ Sbjct: 62 IFVVKRVVEEVEDPNTEISVEEARKTHPDAVVGDVIRFDRTPQNFGRIAAQTAKQVVLQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +R+ ERD Y E+ D+VGE+++G V+R + VIVDLG ++ V+ E + E R G R Sbjct: 122 IRDYERDSVYAEYIDRVGEVLNGIVQRADPKAVIVDLGKAEAVMPAREQVPNERYRVGQR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V ++ RGPQ+++SRTH + +LF +EVPEIY+G V++ AV+R+PG R+K+AV Sbjct: 182 LKVYLLEVNKDTRGPQLIVSRTHANLIRRLFELEVPEIYSGAVEIMAVAREPGLRSKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + +DPVG+CVG+RG R+Q +V EL EKID++ WSPD+ TF+ NAL PA V L Sbjct: 242 AARQEKVDPVGSCVGVRGVRIQNIVNELYGEKIDVIEWSPDTPTFIANALSPAKPISVQL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E VIVP EQ+SLAIG+ GQN RLA +LTGW IDI E + + Sbjct: 302 NEAEKVARVIVPTEQMSLAIGKDGQNARLAYKLTGWRIDIKGPEALRGSDDDILRQARAA 361 Query: 362 FMQAIN--VDEIIAHLLVAEGFA 382 + + + + LV Sbjct: 362 LAEVPDDLMTQGRQPRLVRADGT 384 >gi|225374838|ref|ZP_03752059.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM 16841] gi|225213299|gb|EEG95653.1| hypothetical protein ROSEINA2194_00459 [Roseburia inulinivorans DSM 16841] Length = 390 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 144/346 (41%), Positives = 229/346 (66%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A ELL+ + + EK+I ++ +L + +S+ A ++ +G +++V I+PET + +F Sbjct: 7 AKNNELLEALNILEQEKNISKETLLEAIENSLITACKNHFGKSENVKVNIDPETCEYHVF 66 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + +VVE+VE+ +ISL A+ D ++ +V+ + +FGR+A Q+AK VI+QK+R Sbjct: 67 QEKKVVEKVEDPVEEISLVNAKMIDSKYELDDIVNVEVKSKEFGRIATQNAKNVILQKIR 126 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER + E+ K +I++G V+R NV ++LG D ++ +E + E +P +R+K Sbjct: 127 EEERKVLFDEYYSKEKDIVTGIVQRYVGKNVSINLGKVDAILTENEQVKGEVFQPTERIK 186 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V+ +GP+VL+SRTHP+ + +LF EV E+ +G V++KA++R+ GSR K+AV+S Sbjct: 187 VYILEVKSTSKGPRVLVSRTHPELVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVWS 246 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGM G+RV A+V ELR EKIDI+ W+ + A + NAL PA V V+ D Sbjct: 247 NDPDVDPVGACVGMNGARVNAIVNELRGEKIDIITWNENPAMLIENALSPAKVISVIADA 306 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 307 EEKAAKVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 352 >gi|253580823|ref|ZP_04858086.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847893|gb|EES75860.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 406 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 149/349 (42%), Positives = 222/349 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D + EKSI +D +L + S+ +A ++ +G ++ V I+PET D S++ Sbjct: 4 ELREALDILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNVHVTIDPETCDFSVYADRS 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VE VE+ +ISL A +IGG++ P+ +FGR+A Q+AK VI+QK+RE ER Sbjct: 64 IVEYVEDPAMEISLADALKITSRAEIGGMIQVPIQSKEFGRIATQNAKNVILQKIREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ K E+++G V+RV NV ++LG +D V+ +E + E +P +R+K YI Sbjct: 124 KVLYDEYYGKEKEVVTGIVQRVMGKNVSINLGKADAVLSENEQVKGETFQPTERIKVYIL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +GP++L+SRTHP + +LF EV E+ +G V++K+++R+ GSR K+AV+S+D Sbjct: 184 EVKDTPKGPRILVSRTHPGLVKRLFESEVAEVKDGTVEIKSIAREAGSRTKIAVWSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D VGACVGM G+RV AVV ELR EKIDI+ W + A + NAL PA V V+ D D Sbjct: 244 VDAVGACVGMNGARVNAVVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 304 ALVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQAKEAGDFYDY 352 >gi|116492653|ref|YP_804388.1| transcription elongation factor [Pediococcus pentosaceus ATCC 25745] gi|116102803|gb|ABJ67946.1| Transcription elongation factor [Pediococcus pentosaceus ATCC 25745] Length = 362 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 137/340 (40%), Positives = 207/340 (60%), Gaps = 1/340 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ D + EK I ++V++ + ++ A + YG ++ VE N GDI ++ + + Sbjct: 4 EMITALDILEKEKGIKKEVIVEALEAALVSAFKRNYGQAQNVEVEFNDRKGDIHVYAVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ ++SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEEVEDDQLEVSLADALMINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ EI++G V + V VDLG + V+ + + I E P D +K YI Sbjct: 124 GVIYEKYGQYEDEIVTGEVSHRDNRYVYVDLGGVEAVMAKSDQIPGEQYEPHDHIKVYIT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQ+ SRT + +LF EVPE+Y+G V++ +++R+ G RAK+AV S+D Sbjct: 184 KVENNGKGPQIFASRTDSGLLKRLFEQEVPEVYDGTVEIMSIAREAGDRAKIAVRSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 ID VG CVG +G RVQ +V EL E +DI+ W D A ++ NAL+P+ V V+ + ED Sbjct: 244 IDAVGTCVGAKGQRVQTIVNELHGENMDIIEWKEDPAEYIANALKPSEVIDVLFNEEDEN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIGRRGQN RLA++L + IDI +E + Sbjct: 304 YCMVIVPDYQLSLAIGRRGQNARLAAKLVNFKIDIKSETD 343 >gi|116624262|ref|YP_826418.1| NusA antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|116227424|gb|ABJ86133.1| NusA antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 542 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 162/426 (38%), Positives = 247/426 (57%), Gaps = 6/426 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + Q + ++ EK ID +VL + D++ AAR Y + D +++P+TG I L+ + +V Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ + +++L AR D + ++GG V P GR++ Q+AKQVI QKVREAER+ Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + GE+++ T+KRVE + I+DLG ++ + + E E GDRV+ I Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGKTEAKLPKKEQSRLEGYSVGDRVRCIIKL 205 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP VL+SR P+ +++LF EVPEIY+G V ++ +R+ G R K+AV S D + Sbjct: 206 VDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRDV 265 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 D VGACVGM+G RVQ+++ ELR EKIDI+ +S DS F +AL PA V+++ +D Sbjct: 266 DSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEKH 325 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ--- 364 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE + Sbjct: 326 MEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVESQMAALVAPGAPVSV 385 Query: 365 --AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + E +A L+ G A +E+L + E+ + G E+ IQ Y + Sbjct: 386 LIDYGMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQTAVVAYYSQFED 445 Query: 423 TLQKKI 428 + Sbjct: 446 PASENA 451 >gi|260438329|ref|ZP_05792145.1| transcription termination factor NusA [Butyrivibrio crossotus DSM 2876] gi|292808916|gb|EFF68121.1| transcription termination factor NusA [Butyrivibrio crossotus DSM 2876] Length = 366 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 224/365 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ D + EK I + V++ + +S+ A ++ +G + +++ +TGD + Sbjct: 2 NTELITALDILEKEKKISKKVLIEAIENSLLAACKNHFGKNENFTAKVDTKTGDFKVTAA 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL A+ P +IG ++ + +FGR+AVQ++K I+QK+RE Sbjct: 62 KEVVETVEDSVTQISLADAQMISPKYNIGDTINVEIKSAEFGRIAVQNSKSAILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ K +I++G V R N++++LG +D ++ + + E +P DR+K Y Sbjct: 122 ERQAVYNEYHAKEKDIVTGIVSRYAGNNLVINLGRADAILSEADMVKGEKYKPNDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ E++G ++ +SR HP+F+ +LF EV E+ +G V++++++R+ GSR K+AV+S + Sbjct: 182 VTEVKTEKKGLKIAVSRCHPEFVKRLFEAEVAELRDGTVEIRSIAREAGSRTKMAVWSKN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVG+CVG+ GSRV AVV+EL EKIDI+ WS + A + NAL PA V V D + Sbjct: 242 PNVDPVGSCVGVNGSRVNAVVSELNGEKIDIINWSKNPANLIENALSPAKVVYVAADAEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 +VIVP QLSLAIGR GQN RLA++LTG+ IDI +E + D E Sbjct: 302 KTAQVIVPDYQLSLAIGREGQNARLAARLTGFKIDIKSESQARDLGLLDEVESYADETAE 361 Query: 366 INVDE 370 + E Sbjct: 362 SDDAE 366 >gi|162454076|ref|YP_001616443.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56'] gi|161164658|emb|CAN95963.1| N utilization substance protein A [Sorangium cellulosum 'So ce 56'] Length = 547 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 200/481 (41%), Positives = 291/481 (60%), Gaps = 35/481 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I D VA EK ID+ +++ + +I KAA+S++G ++ N +TG I LF+ + VVE Sbjct: 17 ILDQVAKEKGIDKKILVETIEAAILKAAQSVFGPTRELEARFNEDTGQIDLFQYMTVVEA 76 Query: 72 VENYTCQISLKVA-------------------------RDRDPSIDIGGVVSDPLPPMDF 106 V +IS+ + RD + G ++ F Sbjct: 77 VTEPEREISITDVDKLKLDATLGEELGFQVFWRPEDAEKARDQDKEYGDILKLKHGRTTF 136 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVI 165 GR+A Q+AKQV++Q+VR+AERD + E+KD+ GE+I G V+R E N+IVD+G ++GV+ Sbjct: 137 GRIAAQTAKQVLLQRVRDAERDLIFNEYKDRKGELIRGIVRRFEKGNNIIVDIGRTEGVL 196 Query: 166 RRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E RE RPGDR+ +Y+ D+ RE RGPQV+LSR+ P+ + KLF EVPEIY GIV+ Sbjct: 197 TFREQTPRETYRPGDRIVAYVKDIDREARGPQVILSRSDPRLVEKLFEAEVPEIYEGIVR 256 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 + +V+R+PG+R+K+AV S D+ +DPVGACVGM+GSRVQAVV ELR EKIDIV + D A Sbjct: 257 IVSVAREPGARSKIAVTSRDADVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDRDPAR 316 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +VI A++PA V KV++DE GR+E++VP E+LSLAIGR+GQNVRLA+QLT W +DII+E Sbjct: 317 YVIAAIQPAEVHKVIVDEADGRMELVVPDEKLSLAIGRKGQNVRLAAQLTNWKLDIISET 376 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE-E 404 + ++ + Q + V E IA + GF +EE++ + E+A+I G E Sbjct: 377 KFKQMEEEAISALQQMDV----VTEQIAKSMYRLGFRALEEVSEASVEELAAIPGLGGVE 432 Query: 405 TAVEIQGRAREYLEGIDIT----LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460 A I+ +A +E + + L E L I G+ + V L E G +++E Sbjct: 433 AADRIKSQADTTMERLRQERIRSASSRTEPLTDRERLMFIRGVGDRTVVLLEEAGYRSVE 492 Query: 461 D 461 D Sbjct: 493 D 493 >gi|227890227|ref|ZP_04008032.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC 33200] gi|227849229|gb|EEJ59315.1| transcription elongation factor NusA [Lactobacillus johnsonii ATCC 33200] Length = 416 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 140/403 (34%), Positives = 226/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 14 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ + Sbjct: 134 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS Sbjct: 194 RVGSDSKGAQITVSRTAPALVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED Sbjct: 254 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 314 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 373 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV +AE D ++ S D + E Sbjct: 374 DNVSNEETPESIAEQIEDDPSDTFPNGEDVNSALNDDADKDEE 416 >gi|148657848|ref|YP_001278053.1| NusA antitermination factor [Roseiflexus sp. RS-1] gi|148569958|gb|ABQ92103.1| NusA antitermination factor [Roseiflexus sp. RS-1] Length = 442 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 144/339 (42%), Positives = 219/339 (64%), Gaps = 3/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R G +I V ++P TG + Sbjct: 2 KSDFYAAISQIASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPVTGMARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV++V + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q + Sbjct: 62 YAEKQVVDDVFDERFEIDLESARKIKPDVELGESVVVEATPRDFGRIAAQTAKQVILQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ER+ Y E+ D+ GE+++ TV+R+ GNVI+++G ++ ++ E + + G R+ Sbjct: 122 KEVEREHIYGEYMDREGELVTATVQRIAKGNVILEMGKAEAILPPKEQVETDRYYHGQRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ ++RRE RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV Sbjct: 182 KVYLMEIRREDRGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + IDPVG+CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLR 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +D VIVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 302 DDEHAATVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 340 >gi|331082958|ref|ZP_08332078.1| transcription termination factor NusA [Lachnospiraceae bacterium 6_1_63FAA] gi|330399953|gb|EGG79611.1| transcription termination factor NusA [Lachnospiraceae bacterium 6_1_63FAA] Length = 384 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 222/344 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EKSI +D +L + S+ +A ++ +G +I+V INPET D + Sbjct: 2 NTELLEALNILEKEKSISKDTLLEAIEQSLIQACKNHFGKADNIKVNINPETCDFGVLAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV + +ISL A+ + +G +V+ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVEEVYDPVTEISLADAKMMNSQYGLGDIVNVEIKSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + ++ K ++++G V+R N ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVIFDQYYGKEKDVVTGIVQRSLGRNYSINLGKADAILTENEQVKTEVFKPTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++++SRTHP+ + +LF EV EI +G V+VK+++R+ GSR K+AV+S+D Sbjct: 182 ILEVKDAPKGPKIMVSRTHPELVKRLFEAEVTEIKDGTVEVKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+ G+RV +VV ELR EKIDI+ WS + A + NAL PA V V D + Sbjct: 242 PDVDPVGACVGINGARVNSVVEELRGEKIDIINWSDNPALLIENALSPAKVISVTADPEE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KSATVIVPDFQLSLAIGKEGQNARLAARLTGFKIDIKSETQARE 345 >gi|220927907|ref|YP_002504816.1| NusA antitermination factor [Clostridium cellulolyticum H10] gi|219998235|gb|ACL74836.1| NusA antitermination factor [Clostridium cellulolyticum H10] Length = 382 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 242/368 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+ + + EK I +++++ + ++ A + +G+ +++V I+ TGD+ +F L Sbjct: 3 AELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMNVKVNIDRVTGDVKVFALR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V E+ + IS+ A +P++DIG V + P FGR+A Q+AKQV++QK+REAE Sbjct: 63 KVAEDPDVEAMDISIGEAAKLNPTLDIGDYVESEVTPRSFGRIAAQTAKQVVVQKLREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF +K +I++G ++R+E NVIVDLG ++ V+ E E R +R+KSYI Sbjct: 123 RGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAVLGSTEQTPGEEYRFNERLKSYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ++LSRTHP + +LF +EVPEI++G V++K++SR+PGSR KLAV+S D Sbjct: 183 VEVKKTTKGPQIMLSRTHPGLVKRLFELEVPEIHDGTVEIKSISREPGSRTKLAVYSKDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G+RVQA+V ELR EKIDI+ WS D ++ ++L PA V +V +DE+ Sbjct: 243 NVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWSNDPKDYISSSLSPAKVVRVDVDEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +K + + Sbjct: 303 SAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRQSIEKQLFDDSLNNGYLD 362 Query: 367 NVDEIIAH 374 D + Sbjct: 363 ETDTDSMN 370 >gi|332704826|ref|ZP_08424914.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis Bay] gi|332554975|gb|EGJ52019.1| NusA antitermination factor [Desulfovibrio africanus str. Walvis Bay] Length = 494 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 177/430 (41%), Positives = 272/430 (63%), Gaps = 6/430 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + D ++ ++ IDRD+++ + ++++ + YG DI V + +TG+I +F Sbjct: 4 ELRKAIDQISKDRGIDRDLLVDTLEEAVRSSVVRKYGDELDIEVNFSEDTGEIEVFHYKV 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVE+ +IS++ AR DP + + + L D GR+A QSAKQVIIQ++R+AE+ Sbjct: 64 VVDEVEDPNTEISMEDARQHDPGVQMDDDIGFKLNIEDLGRIAAQSAKQVIIQRMRDAEQ 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+KD++GEI+SG ++R + I++LG ++ ++ R+E I +E + GDRV+ YI Sbjct: 124 EIIFEEYKDRMGEIVSGIIQRRDRSGWIINLGRTEALLPREEQIPKERYKRGDRVQGYII 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E RGPQV+LSR+HP++M LF EVPE+ + +V++ V+RDPGSRAK+AV S D Sbjct: 184 NVLKEGRGPQVILSRSHPEYMSALFRREVPEVADSVVKIMGVARDPGSRAKVAVMSRDRD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG+RGSR+Q +V E R E+IDIVVW PD A + NAL PA++T++ +DE+ Sbjct: 244 VDPVGACVGIRGSRIQNIVQEFRGERIDIVVWKPDIADYARNALSPALITRITVDEEETL 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 +EV+VP +QL+LAIGR+GQNV+LAS+L GW IDI TE Q Q N Sbjct: 304 LEVVVPDDQLTLAIGRKGQNVKLASKLLGWKIDIFTESRYGELHAAR-----QTLEQVAN 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 V EI + GF +EE+A + ++ I G E ++ A + L Sbjct: 359 VVEINIERFLEAGFDSLEEVARAEDEDLLKIRGMSESKINDLHA-AIKLLAPSAYATPAD 417 Query: 428 IRELGVSEEL 437 + E + E++ Sbjct: 418 MTEGEIGEDV 427 >gi|329667119|gb|AEB93067.1| N utilization substance protein A-like protein [Lactobacillus johnsonii DPC 6026] Length = 406 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 140/403 (34%), Positives = 226/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ + Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED Sbjct: 244 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV +AE D ++ S D + E Sbjct: 364 DNVSNEETPESIAEQIEDDPSDKFPNGEDVNSALNDDADKDEE 406 >gi|126698905|ref|YP_001087802.1| transcription elongation protein [Clostridium difficile 630] gi|255100326|ref|ZP_05329303.1| transcription elongation protein [Clostridium difficile QCD-63q42] gi|255306264|ref|ZP_05350436.1| transcription elongation protein [Clostridium difficile ATCC 43255] gi|115250342|emb|CAJ68164.1| Transcription elongation protein [Clostridium difficile] Length = 384 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 148/348 (42%), Positives = 229/348 (65%), Gaps = 2/348 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + ++ ID+++++ + ++ A + +G+ ++RVE + + GDI +F Sbjct: 2 NHEFMEALDELVVDRGIDKEILIDTIEQALLTAYKKNFGSAQNVRVEFDRDKGDIKVFSQ 61 Query: 66 LEVVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + Y +I L AR+ +P+ ++G ++ + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RVVVDESDLYDTFLEIELADAREINPNYELGDIIEHEVTPKNFGRIAAQTAKQVVVQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF +K EI++G V R V V+LG +G++ + E I EN + G ++K Sbjct: 122 EAEREIVYNEFIEKENEIVTGEVARANKNVVYVNLGRIEGIMTQSEQIPFENYKAGQKIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF EVPEIY GIVQ+K+V+R+ GSR K+AV S Sbjct: 182 FYILEVKKTNKGPQIVVSRSHPGLVKRLFEEEVPEIYEGIVQIKSVAREAGSRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +G RV+ +V EL DEKIDI+ +S D A F+ AL P+ V +V +DE Sbjct: 242 IDEKIDPIGACVGPKGLRVKNIVDELGDEKIDIIKYSEDPAEFISAALSPSKVVRVDIDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 D VIVP QLSLAIG+ GQN RLA++LT W IDI +E + Sbjct: 302 DEKSALVIVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSESQAEQEM 349 >gi|291279908|ref|YP_003496743.1| N utilization substance protein A [Deferribacter desulfuricans SSM1] gi|290754610|dbj|BAI80987.1| N utilization substance protein A [Deferribacter desulfuricans SSM1] Length = 443 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 170/429 (39%), Positives = 267/429 (62%), Gaps = 9/429 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL ++AD + EK + ++++ + DSI+ A YG ++D V ++ E G I + Sbjct: 1 MKELAKVADEIGKEKGLSKELLKEALEDSIKAAVIRKYGRLTDPEVTVDIERGKIDIKVP 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VEN +I L+ A+ P ++G V+ P+ + GR A AKQ +++K+REA Sbjct: 61 KEVVESVENKKYEILLEDAKKIKPDAELGDVIMVPISFQELGRQAATVAKQRMVEKIREA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y EF++K+G+I++G V + + ++IV +G ++ + + E I + GD V++ Sbjct: 121 EKQVVYDEFQNKIGQIVTGVVLKSDKDSMIVSIGKTEAFMPKREIIPGDYYDRGDYVRAL 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + ++R + PQ++LSRTHP F+ KLF +E+PE++ GI++VKAV+R+PG RAK+AV+S + Sbjct: 181 LLEIRVIRGWPQLILSRTHPDFLKKLFEVEIPEVFEGIIEVKAVAREPGDRAKVAVYSKN 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+IDPVGAC+G++G+R+ A+ ELR EKID++ WSPD FV NAL PA V + ED Sbjct: 241 SNIDPVGACIGLKGTRINAISNELRGEKIDVIEWSPDPVKFVCNALSPADVILTNIFEDE 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 IEV+VP +QLSLAIG+RGQNVRLA+ LTGW +D++ E E +I R++ E+ + + Sbjct: 301 KTIEVVVPDDQLSLAIGKRGQNVRLAAMLTGWRLDVLKESEYNIIRKERLQEQEEELKEF 360 Query: 366 INV---------DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + DE + L+ G DVE+L+ + E+ G +E+ AV I A +Y Sbjct: 361 YEIYNLENIDVLDENMISKLIEHGIDDVEKLSTASVDEVVMALGVNEDQAVVIINSAIDY 420 Query: 417 LEGIDITLQ 425 L L Sbjct: 421 LTEKLEELD 429 >gi|212704654|ref|ZP_03312782.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098] gi|212671888|gb|EEB32371.1| hypothetical protein DESPIG_02717 [Desulfovibrio piger ATCC 29098] Length = 438 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 173/427 (40%), Positives = 267/427 (62%), Gaps = 7/427 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + + + D+ V N TGDI +++ Sbjct: 2 NLELKKAIDQISKDKGLDRDMLIKTLEDAVRTSVQRRFSEDMDVEVRYNDNTGDIEVYQF 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ VEN I + AR DPS+ I V + D GR+A QSAKQVIIQ++R Sbjct: 62 KIVVEDGEVENEDTHIGITEARTHDPSVQIDDEVGFRVKVEDLGRIAAQSAKQVIIQRMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD++GEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + DRV+ Sbjct: 122 DAEQEIIYDEYKDRMGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRNDRVQ 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I DVR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 182 AIIIDVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSPD AT+ NAL PA+V+++V+DE Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPDIATYARNALAPAMVSRIVVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE + Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTETRYNEANAIGH-----GLE 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V E+ + L+ G+ ++ L E++ + +++ + Sbjct: 357 QVASVAEVSMNQLLEAGYTSLDLLRQATDEELSDKLAISDSRIADLRSAINFLAPVAEPE 416 Query: 424 LQKKIRE 430 + + Sbjct: 417 PRAAEED 423 >gi|220903347|ref|YP_002478659.1| transcription elongation factor NusA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867646|gb|ACL47981.1| NusA antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 449 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 173/429 (40%), Positives = 270/429 (62%), Gaps = 7/429 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DR++++ + D+++ + + D+ V N ETGDI +++ Sbjct: 2 NLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQF 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V+ + V N QI L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R Sbjct: 62 KIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+VGEI+SG V+R + G +V+LG ++ ++ R+E I RE+ + GDRV+ Sbjct: 122 DAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQ 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 182 ALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DPVGACVG+RGSR+Q +V EL E+IDIVVWS D AT+ NAL PA+V+++V+DE Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE + Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTETRYNEANAIGH-----GLE 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V E+ L+ G++ +++L E++ +++ ++ T Sbjct: 357 QVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKLTISASRIADLRSAINFLAPVVEET 416 Query: 424 LQKKIRELG 432 + ELG Sbjct: 417 PESSAVELG 425 >gi|332981612|ref|YP_004463053.1| NusA antitermination factor [Mahella australiensis 50-1 BON] gi|332699290|gb|AEE96231.1| NusA antitermination factor [Mahella australiensis 50-1 BON] Length = 349 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 142/348 (40%), Positives = 231/348 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q + EK + +DV+L + ++ A + YGT +++ V+IN +GDI ++ Sbjct: 2 NDEFMQALYKIEKEKHLPKDVLLQAIQSALLSAYKKDYGTANNVSVDINANSGDIKVYAA 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVE+V+N +I L ARD P + +G +++ + P DF R+A ++A+ +++QK+ E Sbjct: 62 KKVVEDVKNSAVEIDLYKARDIRPDVQLGDIINIEVTPKDFRRIAAKAARDIVLQKIHEV 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+D E+ +K GEI++ TV R++ NV +DLG +G++ +ET+ E + DR+K Y Sbjct: 122 EKDIILDEYSEKEGEILTATVARLDRKNVYLDLGKIEGIMPMNETVPSEIYKVNDRLKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I + ++ + P V++SR+HP + +LF +E+PEI++GIV ++A++R+ G R+K+AV+S Sbjct: 182 ILEAKKGGKSPNVIVSRSHPGLVKRLFELEIPEIHDGIVDIRAIAREAGHRSKVAVYSKY 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G+C+G +G+R+Q ++ ELR E+IDIV WS F+ NAL PA V +V+L+E Sbjct: 242 DKIDPIGSCIGPKGTRIQTIMNELRGERIDIVEWSLMPERFIANALSPAKVLEVILNEKE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 VIVPK QLSLAIG+ GQN RLA++LTGW IDI T ++ +N K Sbjct: 302 KSARVIVPKNQLSLAIGKEGQNARLAAKLTGWKIDIKTPDQQEVNETK 349 >gi|268319261|ref|YP_003292917.1| transcription elongation factor NusA [Lactobacillus johnsonii FI9785] gi|262397636|emb|CAX66650.1| transcription elongation factor NusA [Lactobacillus johnsonii FI9785] Length = 394 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 137/390 (35%), Positives = 222/390 (56%), Gaps = 2/390 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ + Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED Sbjct: 244 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEI 395 NV +AE D ++ Sbjct: 364 DNVSNEETPEAIAEQIEDDPSDKFPNGEDV 393 >gi|118579397|ref|YP_900647.1| transcription elongation factor NusA [Pelobacter propionicus DSM 2379] gi|118502107|gb|ABK98589.1| NusA antitermination factor [Pelobacter propionicus DSM 2379] Length = 401 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 173/353 (49%), Positives = 238/353 (67%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + L + + EK IDR VVL M ++ AA Y D+ N +TG++ LF Sbjct: 4 NISLKHAIEQIVKEKGIDRQVVLEAMEQAVLTAANKKYRNTRDLEARYNSDTGEVELFEF 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VVEEVE+ +ISL AR+ DP +++G + + + F R+A Q+AKQVIIQKVREA Sbjct: 64 VIVVEEVEDSYKEISLDEAREIDPDVEVGDSLGEKIDSSGFTRIAAQTAKQVIIQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ + E+ D+ E+I+G V+R E G++++DLG ++ V+ E + RE RPGDR+++ Sbjct: 124 ERETIFNEYSDRQWEVITGMVRRFEKGDLLIDLGRAEAVLPSKEQMPREVYRPGDRIRAI 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I D+R +GPQ++LSRTHP + KLF EVPE+ GIV++ A+ RDPGSRAKLAV S+D Sbjct: 184 ITDIRVTPKGPQIILSRTHPSMLAKLFEAEVPEVAEGIVEINAIVRDPGSRAKLAVSSND 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A F NAL PA V+KV +DED Sbjct: 244 PDVDPVGACVGMRGSRVQNVVSELRGEKIDIIPWSEDIARFACNALSPAQVSKVFVDEDN 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +EV+V +QLSLAIG+RGQNV LA++LTG IDI +E + + + + Sbjct: 304 RALEVVVADDQLSLAIGKRGQNVSLAARLTGCRIDIKSEAKAAEAELQAYASY 356 >gi|319892283|ref|YP_004149158.1| Transcription termination protein NusA [Staphylococcus pseudintermedius HKU10-03] gi|317161979|gb|ADV05522.1| Transcription termination protein NusA [Staphylococcus pseudintermedius HKU10-03] Length = 392 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 154/388 (39%), Positives = 236/388 (60%), Gaps = 1/388 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N ++G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSARNVRVELNLDSGTFRVISRKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ +I L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E P +R+K Y+ Sbjct: 125 EILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEAVLSEAERSPNETYLPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI+ G V+VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFEGTVEVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV WS D FV NAL P+ V V++DE+ Sbjct: 245 IDAVGACVGAKGARVEAVVAELGGEKIDIVQWSEDPKVFVRNALSPSQVIDVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + ++ + + A+ Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAKALGIGEKEATTVETEPVAM 364 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE 394 +E+ E D L Sbjct: 365 TAEELDLEATTDEHIEDNASLEDESKEN 392 >gi|42519362|ref|NP_965292.1| transcription elongation factor NusA [Lactobacillus johnsonii NCC 533] gi|41583650|gb|AAS09258.1| N utilization substance protein A-like protein [Lactobacillus johnsonii NCC 533] Length = 406 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 140/403 (34%), Positives = 226/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I ++V++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + E P D+V+ + Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGETYNPQDKVRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+DS Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V DED Sbjct: 244 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEDNPSDFIANALNPAEVIAVQFSGDEDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVEADQETTN 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV +AE D ++ S D + E Sbjct: 364 DNVSNEETPESIAEQIEDEPSDKFPNGEDVNSALNDDADKDEE 406 >gi|166030876|ref|ZP_02233705.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC 27755] gi|166029143|gb|EDR47900.1| hypothetical protein DORFOR_00556 [Dorea formicigenerans ATCC 27755] Length = 401 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 153/399 (38%), Positives = 237/399 (59%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I+V ++ +T D LF Sbjct: 2 NTELLEALNILEKEKEISKETLLDAIENSLLNACKNHFGKADNIKVIMDHDTCDYQLFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ QISL A D D+G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVETVEDPLEQISLDEASQLDGHYDLGDIVRVPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVRDGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + N Sbjct: 302 KKASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPENYMELGEGVY 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + +V+ A + E EE Sbjct: 362 EEDVYDENEEYPEDADVEVDTEAENETEANVQPEEDGEE 400 >gi|227892601|ref|ZP_04010406.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM 16047] gi|227865586|gb|EEJ73007.1| transcription elongation factor NusA [Lactobacillus ultunensis DSM 16047] Length = 413 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 144/399 (36%), Positives = 227/399 (56%), Gaps = 6/399 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 19 EMLEAFATLEKTKGIKQDVIIDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 78 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 79 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 138 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + +S E P D+++ + Sbjct: 139 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMSNEVYNPQDQIRVLVT 198 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 199 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 258 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V + DED Sbjct: 259 IDPVGTCVGQKGTRVQNVVNELGGENIDIVKYEDDPSDFIANALNPAEVIAVQFGEDEDE 318 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + T+ A Sbjct: 319 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDNTTETDNNA 378 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 N E + + I E S + EE Sbjct: 379 NNEAENTK----NSDSEEASDKTSSDIDENTSADDNTEE 413 >gi|148270198|ref|YP_001244658.1| transcription elongation factor NusA [Thermotoga petrophila RKU-1] gi|147735742|gb|ABQ47082.1| NusA antitermination factor [Thermotoga petrophila RKU-1] Length = 344 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 141/336 (41%), Positives = 222/336 (66%), Gaps = 1/336 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LLEV Sbjct: 5 LLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEVE+ QIS++ A+ DP ++G VV L +FGR+A Q+AKQV+IQ++RE E++ Sbjct: 65 VEEVEDPATQISIEEAKKVDPLAEVGSVVKKELNVKNFGRIAAQTAKQVLIQRIRELEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Q+ ++ + G + + V RV + +G + + + E I E + GD VK YI D Sbjct: 125 KQFEKYSELKGTVTTAEVIRVTGEWADIRIGKLETRLPKKEWIPDEEIEAGDLVKVYIID 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D ++ Sbjct: 185 VVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVSSNDPNV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V + D++ Sbjct: 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 VIVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 ARVIVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|153855238|ref|ZP_01996404.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814] gi|149752237|gb|EDM62168.1| hypothetical protein DORLON_02418 [Dorea longicatena DSM 13814] Length = 399 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 147/341 (43%), Positives = 227/341 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ +N ET + L+ Sbjct: 2 NTELLEALNILEKEKDISKETLLDAIENSLMNACKNHFGKTDNIKLIMNKETCEYQLYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEEVEDKLEQISLEDAKEIDSKFELGDIVHIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 IVEVKNTTKGPKILVSRTHPELVKRLFESEVTEVKDGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQ 342 >gi|269469301|gb|EEZ80807.1| transcription elongation factor [uncultured SUP05 cluster bacterium] Length = 390 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 171/413 (41%), Positives = 253/413 (61%), Gaps = 23/413 (5%) Query: 101 LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN 160 + +FGR+A Q KQVIIQKVREAER+ ++ +VGE+I TVKRV+ GNV VD+G Sbjct: 1 METEEFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMGG 60 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 DG+I + + I E+ R DR+++YI DV+ RG Q+ LSRT P+ M++LF MEVPEI Sbjct: 61 VDGMISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEIS 120 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 G++++ +RDPG R+KLAV S D +DP+G+C+GMRGSRVQAV EL E++DI++W Sbjct: 121 EGVIEIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILWD 180 Query: 281 PDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A FVINA+ PA V+ +V+DED +++ V +QL+LAIGR GQN++LAS+LTGW ++ Sbjct: 181 EDPAQFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKLN 240 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 +++ E + ++ + + + + VD +A +L+ EGF ++E+A + SIE Sbjct: 241 VMSINESEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIEE 300 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTME 460 FD E+Q RA + + + SE L + G+D + AL E I T++ Sbjct: 301 FDVSMVEELQERASDAQLVQA------LGDAESSEVLMGVEGMDEDLVQALIEAEIATVD 354 Query: 461 DLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 DLA S+D+LL E K++ SMI+ AR GW + Sbjct: 355 DLAELSIDELLDIQE-----------------MDKEKASSMIMTARENEGWFD 390 >gi|149925033|ref|ZP_01913351.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1] gi|149814097|gb|EDM73723.1| transcription termination factor NusA [Plesiocystis pacifica SIR-1] Length = 461 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 178/433 (41%), Positives = 269/433 (62%), Gaps = 32/433 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + DAV EK+I RDV++ + ++ AA+ ++ +I + ETG+++LF++L VVE Sbjct: 10 VIDAVCQEKNISRDVLVDTVEQAVATAAKRVF-ADREIEASFDLETGNVNLFQVLYVVET 68 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-------------------------F 106 VE ++S+ AR +IG + + ++ F Sbjct: 69 VELPMREMSIDQARRSGLEAEIGDELLFQIFYLEDDRKQAEDQAKQYPEIPALQKVNTAF 128 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGV 164 GR+A Q+AKQVIIQ+VREAER+ Y +KDK GE+++G V+R E G+++V++ G ++ + Sbjct: 129 GRIAAQTAKQVIIQRVREAERENLYDRYKDKKGELMTGIVRRFERGSIVVEVDNGRAEAI 188 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 + + + RE+LRPGDR+ +++ DV + RGPQ++LSRTH + KLF EVPEI+ GIV Sbjct: 189 LPSRDQVPRESLRPGDRIVAFVKDVDKSARGPQIILSRTHKGLVEKLFEHEVPEIFEGIV 248 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +++A +R+PG+R+K+AV S D +DPVGACVGMRGSRVQAVV ELR EKIDIV + D A Sbjct: 249 RIEACAREPGARSKIAVSSRDRDVDPVGACVGMRGSRVQAVVQELRGEKIDIVPFDEDPA 308 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV NA++PA V++V++D + +E++VP ++LSLAIG+RGQNVRLAS+LTGW IDI + Sbjct: 309 RFVCNAIQPAQVSRVLIDAERHTMELVVPDDKLSLAIGKRGQNVRLASRLTGWRIDIHSR 368 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + ++ E V +A L G+ + +LA + E+AS+ G D + Sbjct: 369 SKIRQMERRSQAEIAAIP----GVGHELAAQLFDLGWRTLRDLAVANMEELASVIGGDLD 424 Query: 405 TAVEIQGRAREYL 417 A I A E Sbjct: 425 AADAIIDTANEAA 437 >gi|323340011|ref|ZP_08080277.1| transcription termination factor NusA [Lactobacillus ruminis ATCC 25644] gi|323092517|gb|EFZ35123.1| transcription termination factor NusA [Lactobacillus ruminis ATCC 25644] Length = 401 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 151/398 (37%), Positives = 227/398 (57%), Gaps = 19/398 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL DA+ EK I ++V++ + ++ A + YG +++V + GDI +F + E Sbjct: 4 ELLNALDALETEKGIKKEVIIDALEQALVSAYKKNYGQAQNVKVTFDARRGDIKVFAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV EV + ++SL A + + + +IG + + P DFGR+A Q+AKQVI+Q+VRE ER Sbjct: 64 VVNEVLDSCLEVSLSDALEINRAYEIGDTIDFEVTPRDFGRIAAQTAKQVIMQRVREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++ EI++G V+R + V V+LGN + V+ + + + E DR+K Y+Y Sbjct: 124 QMIYNQYSRYENEIMTGEVERRDSRYVYVNLGNVEAVLSKRDQVPGEVYNSHDRIKVYVY 183 Query: 188 DV------------------RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 V +R RGPQV +SR+HP + ++F EVPEI++G V++K++ Sbjct: 184 KVVDPNENQNAEQNEEEGKKKRRNRGPQVYVSRSHPDLLKRMFENEVPEIFDGTVEIKSI 243 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +R+ G RAK+AV S IDP+G CVG RG RV+A+V EL EK+DIV WS D + ++ Sbjct: 244 AREAGDRAKIAVCSDQEGIDPIGTCVGPRGERVKAIVEELNGEKMDIVEWSEDPSEYIKA 303 Query: 290 ALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 AL+PA + +V D ED V+VP QLSLAIG+RGQN RLA+ LTG+ IDI +E Sbjct: 304 ALKPAEILEVRFDREDDHACTVVVPDTQLSLAIGKRGQNARLAAHLTGYKIDIKSESNME 363 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 ++ E + F D + E E Sbjct: 364 ELDRQSEEEPEENFELPETEDVETEDAISIEDIEADNE 401 >gi|163815206|ref|ZP_02206583.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759] gi|158449401|gb|EDP26396.1| hypothetical protein COPEUT_01364 [Coprococcus eutactus ATCC 27759] Length = 398 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 142/389 (36%), Positives = 229/389 (58%), Gaps = 1/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + E++I +DV+L + S++ A + + T +I V ++ ETG+ ++ E Sbjct: 3 EIIEALNQLEKERNISKDVLLEAIERSLKTACKKDFNTDENITVSLDRETGECHVYAAKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EVEN + QISL A+ + +IG V+ + +FGR+A Q A+ VI+Q + E ER Sbjct: 63 VVDEVENPSFQISLSQAKMLNRRYEIGDTVNVEITTKNFGRIAAQRARNVIVQAINENER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 Y F K ++++G V+R +V V L ++ +++ E I E GDR+K Y+ Sbjct: 123 AAIYDHFHMKEKDVVTGIVERQVGDSVNVSLDDKTEALLKPSEMIEGETYERGDRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GP++++SRTHP+ + +LF EV EI +G+V++K+ R+ GSR+K+AV+S+D Sbjct: 183 TEVKKTNKGPKIVVSRTHPELVKRLFEKEVTEIADGVVEIKSFCREAGSRSKIAVWSNDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++D VGACVG+ G RV AVV +L EKIDI+ WS + A F+ NAL P+ V V +D D Sbjct: 243 NVDAVGACVGVNGDRVNAVVADLNGEKIDIIPWSENPAEFIYNALSPSDVEDVSVDLDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG++GQN RLA++LTG+ IDI + + D + + Sbjct: 303 SAFVVVPDTQLSLAIGKKGQNARLAAKLTGYKIDIKSHSKAEEMGYFDDQAPDGGYDKDF 362 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEI 395 + + A V I E Sbjct: 363 DPYGSDDDYYDEVDDDKDAKSASVDIDET 391 >gi|326204063|ref|ZP_08193924.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325985830|gb|EGD46665.1| NusA antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 382 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 152/368 (41%), Positives = 242/368 (65%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 EL+ + + EK I +++++ + ++ A + +G+ +++V I+ TGD+ ++ L Sbjct: 3 AELILALEQLEKEKGIKKEIIIEAIEAALISAYKKNFGSAMNVKVNIDRVTGDVKVYALR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V E+ + IS+ A +P+++IG V + P FGR+A Q+AKQV++QK+REAE Sbjct: 63 KVAEDPDMEAMDISVGEAAILNPTLEIGDYVESEVTPRSFGRIAAQTAKQVVVQKLREAE 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R Y EF +K +I++G ++R+E NVIVDLG ++ V+ E E R +R+KSYI Sbjct: 123 RGIIYDEFYNKESDIVTGIIQRIEKRNVIVDLGKTEAVLGPTEQTPGEEYRFNERLKSYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ +GPQ+++SRTHP + +LF +EVPEI++G V++K++SR+PGSR K+AV+S D Sbjct: 183 VEVKKTTKGPQIMISRTHPGLVKRLFELEVPEIHDGTVEIKSISREPGSRTKIAVYSKDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG +G+RVQA+V ELR EKIDI+ WS D ++ ++L PA V +V +DED Sbjct: 243 NVDPVGACVGQKGTRVQAIVDELRGEKIDIIKWSNDPRDYISSSLSPAKVVRVDVDEDEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + +K + + Sbjct: 303 SAKVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQLRQSIEKQLFDDSIGSGFLD 362 Query: 367 NVDEIIAH 374 D + Sbjct: 363 ETDPDDIN 370 >gi|222526490|ref|YP_002570961.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl] gi|222450369|gb|ACM54635.1| NusA antitermination factor [Chloroflexus sp. Y-400-fl] Length = 442 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 144/341 (42%), Positives = 222/341 (65%), Gaps = 5/341 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM---SDIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G + Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I L+ AR P IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ ER+ Y EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G Sbjct: 122 KDIERNYIYSEFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQ 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ +V++++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+A Sbjct: 182 RLKVYLMEVKKDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L++ VIVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 302 LNDHEHTALVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 342 >gi|242373557|ref|ZP_04819131.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W1] gi|242348920|gb|EES40522.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W1] Length = 403 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 149/368 (40%), Positives = 229/368 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEVADEIVN 364 Query: 368 VDEIIAHL 375 + Sbjct: 365 TGDEDVEF 372 >gi|303326256|ref|ZP_07356699.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3] gi|302864172|gb|EFL87103.1| transcription termination factor NusA [Desulfovibrio sp. 3_1_syn3] Length = 464 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 176/429 (41%), Positives = 273/429 (63%), Gaps = 7/429 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 LEL + D ++ +K +DRD+++ + D+++ + + D+ V N +TGDI +++ Sbjct: 2 NLELKKAIDQISKDKGLDRDMLIDTLEDAVRTSVLRRFSEDMDVEVTYNDDTGDIEVYQF 61 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ V N QI+L AR+ DPS+ + + + D GR+A QSAKQVIIQ++R Sbjct: 62 KIVVEDDDVANEDTQIALADAREHDPSVQLDDEMGFRVKVEDLGRIAAQSAKQVIIQRMR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+VGEI+SG ++R + G +V+LG ++ ++ R+E I RE+ + GDRV+ Sbjct: 122 DAEQEIIYEEYKDRVGEIVSGIIQRRDKGGWVVNLGRTEAILPREEQIPREHYKRGDRVQ 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I +VR+E RGPQV++SR H +M LF EVPE+ +G+VQ+ V+RDPGSRAK+AV S Sbjct: 182 ALIIEVRKEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAVLS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DPVGACVG+RGSR+Q +V ELR E+IDIVVWSP+ AT+ NAL PA+V+++V+DE Sbjct: 242 RERDVDPVGACVGVRGSRIQNIVQELRGERIDIVVWSPEIATYARNALAPALVSRIVVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +EVIVP +QL+ AIGR+GQNV+LA++L GW +DI TE + Sbjct: 302 EENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTETRYNEANAIGH-----GLE 356 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V E+ L+ G++ ++ L E+A +++ ++ T Sbjct: 357 QVASVAEVSIEALLEAGYSSLDALREASDEELADKLTISASRISDLRSAINFLAPVVEST 416 Query: 424 LQKKIRELG 432 + ELG Sbjct: 417 PESSAVELG 425 >gi|260101365|ref|ZP_05751602.1| N utilization substance protein A [Lactobacillus helveticus DSM 20075] gi|260084817|gb|EEW68937.1| N utilization substance protein A [Lactobacillus helveticus DSM 20075] Length = 364 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 130/343 (37%), Positives = 209/343 (60%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++G V+R + V V +GN + ++ + + + E P D+++ + Sbjct: 134 SHIIDEYSQYEDELVTGPVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 194 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVE 356 >gi|315038575|ref|YP_004032143.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1112] gi|312276708|gb|ADQ59348.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1112] Length = 395 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 136/370 (36%), Positives = 215/370 (58%), Gaps = 2/370 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSSDSDSEDAADE 363 Query: 366 INVDEIIAHL 375 Sbjct: 364 SQEPATNEET 373 >gi|154485019|ref|ZP_02027467.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC 27560] gi|149733972|gb|EDM50091.1| hypothetical protein EUBVEN_02737 [Eubacterium ventriosum ATCC 27560] Length = 408 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 143/349 (40%), Positives = 223/349 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + EK I ++ + + +++ A ++ + ++ V ++ ETGD ++ Sbjct: 2 NKELIEALNILEKEKDISKESLFEAIENNLVVAYKNNFNKADNVTVTMDRETGDFHIYSQ 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEV + +ISL+ AR + ++G +V+ + DFGR+A QSAK I+QK+RE Sbjct: 62 KEVVEEVMDPVTEISLEDARSIKGTYELGDIVNIEIQSKDFGRIATQSAKNGILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R+ N+ V+LG D V+ E E+ RP +R+K Y Sbjct: 122 ERKSLYEQYFEKQDDIVTGIVQRINGKNISVNLGKVDTVLMEKEQAKGEHFRPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ RGP++++SRTHP + +LF EV EI +G V++K+++R+ GSR K+AV+S++ Sbjct: 182 ITEVKDNGRGPRIVVSRTHPGLVKRLFEQEVTEIQDGTVEIKSIAREAGSRTKMAVWSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ G+RV AVV ELRDEKIDIV WS + A + NAL P+ V V+ D D Sbjct: 242 EDVDAVGACVGVNGARVNAVVDELRDEKIDIVNWSENPAILIENALSPSKVVAVLADPDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + Sbjct: 302 KEALVVVPDFQLSLAIGKEGQNARLAAKLTGFKIDIKSESQAKEEGIQY 350 >gi|254445533|ref|ZP_05059009.1| transcription termination factor NusA [Verrucomicrobiae bacterium DG1235] gi|198259841|gb|EDY84149.1| transcription termination factor NusA [Verrucomicrobiae bacterium DG1235] Length = 419 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 155/415 (37%), Positives = 259/415 (62%), Gaps = 1/415 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK I R+ ++S + +I+ AA ++++ I+P G ++ + LL+ Sbjct: 4 EILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWALLD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +ISL+ AR D ++IG V + P GR+A Q+A+Q I+Q++R+ E+ Sbjct: 64 VVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +R Y +FKD+VG+I+SG V+R E G++IVDLG ++ ++ + + E+ PG+R++ + Sbjct: 124 ERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGKAEAMMPSRDQVPGEDYSPGERIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + RGP+++L+R++P+F+++LF +EV EI +G V+++A SR+PG R K+AV SSD Sbjct: 184 KIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTSSDPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+++V EL EKIDI+ + D + AL+PAI V++DE R Sbjct: 244 VDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDERSRR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 I + V ++ L++AIGR+GQN RL S+L GW IDI+ EE ++ + E Q Q Sbjct: 304 ISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETKQAEAAQGLNQIEG 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 +D A LV G E V+ ++ + GF E A +I + +++ +I Sbjct: 364 IDSATAERLVNNGLISPELFLDVEEDDLVEM-GFSAEEAADIIAKVTTFIQSQNI 417 >gi|327183772|gb|AEA32219.1| transcription elongation factor NusA [Lactobacillus amylovorus GRL 1118] Length = 395 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 214/370 (57%), Gaps = 2/370 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGDFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + ++ Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDENSSDSDSEDAADE 363 Query: 366 INVDEIIAHL 375 Sbjct: 364 SQESATNEET 373 >gi|156741122|ref|YP_001431251.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941] gi|156232450|gb|ABU57233.1| NusA antitermination factor [Roseiflexus castenholzii DSM 13941] Length = 442 Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 145/339 (42%), Positives = 220/339 (64%), Gaps = 3/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R G +I V ++P TG + Sbjct: 2 KSDFYAAISQIASERGIPKEAIVEVMEKALATAYRRTLGPNPPPMEISVRLDPLTGAARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV++V + +I L+ AR P +++G V P DFGR+A Q+AKQVI+Q + Sbjct: 62 YSEKQVVDDVYDERFEIDLESARKIKPDVELGESVVVETTPKDFGRIAAQTAKQVILQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ER+ Y E+ D+ GE+++ TV+R+ GNVI+++G ++ V+ E + + G R+ Sbjct: 122 KEVEREHIYGEYMDREGELVTATVQRMAKGNVILEMGKAEAVLPPKEQVETDRYYHGQRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ ++RRE+RGP+++ SR H + +LF MEVPEIYNG V++K+++R+PG R K+AV Sbjct: 182 KVYLMEIRREERGPKLIASRAHKNLITRLFEMEVPEIYNGAVEIKSIAREPGIRTKVAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + IDPVG+CVGMRG R+Q +V EL EKID+V WS + F+ NAL PA V +V L Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSNPKEFIANALSPAQVVEVQLR 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +D VIVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 302 DDEHAATVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDI 340 >gi|163848555|ref|YP_001636599.1| transcription termination factor NusA [Chloroflexus aurantiacus J-10-fl] gi|163669844|gb|ABY36210.1| transcription termination factor NusA [Chloroflexus aurantiacus J-10-fl] Length = 442 Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 144/341 (42%), Positives = 221/341 (64%), Gaps = 5/341 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM---SDIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A R L G D+ V+++P +G + Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYRRLLGPNPPAIDVVVKLDPVSGVARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I L+ AR P IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEIDLEAARRIKPDAQIGEAVLVESTPRDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ ER+ Y EF+D+ GE+++ TV+R GNVI++LG ++ +I E ++ + G Sbjct: 122 KDIERNYIYSEFEDREGELLTATVQRNNGPRGNVILELGKAEAIIPPKEQVANDRYYHGQ 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ +V++++RGP+++ SR H +++LF MEVPEIYNG V++K+++R+PG R K+A Sbjct: 182 RLKVYLMEVKKDERGPRLIASRAHKNLILRLFEMEVPEIYNGAVEIKSIAREPGLRTKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 L++ VIVP +QLSLAIG+ GQNVRLA +LTGW IDI Sbjct: 302 LNDHEHTALVIVPDKQLSLAIGKEGQNVRLAEKLTGWRIDI 342 >gi|300087631|ref|YP_003758153.1| transcription termination factor NusA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527364|gb|ADJ25832.1| transcription termination factor NusA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 500 Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 162/456 (35%), Positives = 259/456 (56%), Gaps = 9/456 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I+ E++ TG I ++ Sbjct: 2 KSDFLLAITQLSAEKNLSKEVVLAAVEAALVSAYRKESFTPNQNIQAELDTMTGKIKVWA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VVE+V + +++L AR +PSI +G V P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKKVVEKVTDRRIEVTLDEARKVNPSIQLGEPVLIEDTPHDAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE E+ K G+I+SG ++RVE VI+DLG ++ V+ E + E RPG R+K Sbjct: 122 AENTAIVDEYAGKAGDIVSGVIQRVEPKQVIIDLGRAEAVMPPSEQVYTERYRPGQRLKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ +V +G V++SR+HP + +LF ME+PEIY+G+V++KAV+R+ G+R+K+AV + Sbjct: 182 FLVEVATTIKGATVIVSRSHPGLLRRLFEMEIPEIYSGMVEIKAVAREGGARSKVAVSAR 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S IDPVG CVG+RG R+Q +V+EL EKID++ WS D A + NAL PA V +V+++E Sbjct: 242 QSGIDPVGCCVGLRGIRIQNIVSELNGEKIDVIPWSEDPALLITNALSPAQVVRVIINEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN----RQKDFNERTQ 360 + ++P Q SLAIG+ GQNVRLA +LTGW IDI + + E + Sbjct: 302 LKSATAVIPDRQQSLAIGKEGQNVRLAVKLTGWRIDIKSVSDYEAELPAVAPAPAVETEK 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + V + V + D E A VK A E E +E+ A E Sbjct: 362 PEDKTAQVAKEKPAKPVEKQAEDAREKATVKAE--AKPEEKPVEVLLELPPEALEPALAT 419 Query: 421 DITLQKKIRELG--VSEELCSIPGIDSKIKVALGEN 454 + + ++ E G +S ++ P I ++ V E+ Sbjct: 420 APSAEPEVEEGGTKLSLDMAERPDIKNESGVRFAED 455 >gi|227513181|ref|ZP_03943230.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC 11577] gi|227083562|gb|EEI18874.1| transcription elongation factor NusA [Lactobacillus buchneri ATCC 11577] Length = 440 Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 149/430 (34%), Positives = 233/430 (54%), Gaps = 1/430 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+ Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D++ Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDNDR 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q + Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQAENEDE 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 E + + + + S E + + + + + ID Sbjct: 364 GTTEESETAEPDQETSGEAVDTDSQEVQTESDEDVEADAQDDQSDNVEKPSDHIDDADSS 423 Query: 427 KIRELGVSEE 436 E S+E Sbjct: 424 DHTEDTSSDE 433 >gi|217967593|ref|YP_002353099.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724] gi|217336692|gb|ACK42485.1| NusA antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 360 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 145/337 (43%), Positives = 220/337 (65%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + + EK +D++VVL + ++ A + YGT RVEIN +I+++ + ++VE+ Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEINIYVVKKIVEK 69 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ P IG + + P +FGR+AVQ AKQVI+Q ++EAER Y Sbjct: 70 VNDNISEISLEEAKSLKPDAKIGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERKILY 129 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++K K GE+++GTV RVE GNV V + + ++ E I E G R+++Y+ +VR+ Sbjct: 130 EKYKAKEGELVNGTVVRVEKGNVYVRFPDIEAILPVKEQIPGEEYWIGRRLRAYLLEVRK 189 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+ Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + ED + VI Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPLSVEIREDEHKAIVI 309 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ + Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346 >gi|73662811|ref|YP_301592.1| transcription elongation factor NusA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495326|dbj|BAE18647.1| transcription termination-antitermination factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 397 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 157/399 (39%), Positives = 238/399 (59%), Gaps = 7/399 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + +RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARTVRVELNMDQGSFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE + +ISL A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEESMDDREEISLDTALVKNPAYEIGDIYEEDVTPSDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R++ Y+ Sbjct: 125 EILYDEFIDKEDDIVTGLIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNERIRVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVHSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLQVIVDEPNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARAAGVYPAEEALN------E 358 Query: 368 VDEIIAHLLV-AEGFADVEELACVKISEIASIEGFDEET 405 DE+ +V +E E+ + +E IE D E Sbjct: 359 EDEMQLDDVVSSENIEVEEDTTESQPTETVEIEDEDAEK 397 >gi|227524396|ref|ZP_03954445.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC 8290] gi|227088627|gb|EEI23939.1| transcription elongation factor NusA [Lactobacillus hilgardii ATCC 8290] Length = 440 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 149/430 (34%), Positives = 233/430 (54%), Gaps = 1/430 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ M ++ A + YG ++ V + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEAMQAALVSAYKRNYGQAQNVEVSFDGTKGEMHVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE V + Q+SL A + +IG + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVETVTDDQMQVSLDDALQINKGYEIGDDIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ ++++GTV+R + V ++L + V+ + + E RP +R+K Y+ Sbjct: 124 ENIFDEYSKYEDDLVTGTVERQDTRFVYINLDKVEAVMGPRDQMPNEVYRPQERIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT P + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 RVENATKGPQVFVSRTDPGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 IDPVG VG +G RVQ +V EL E +DIV W D A ++ NAL PA V V+ D++ Sbjct: 244 IDPVGTAVGPKGQRVQTIVNELHGENMDIVEWDEDDARYIANALNPAEVIDVIFEDDNDR 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LTG+ IDI +E E + + Q + Sbjct: 304 ACTVIVPDYQLSLAIGKRGQNARLAAKLTGFKIDIKSETEAKEFLAERKQKAQQAENEDE 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQK 426 E + + + + S E + + + + + ID Sbjct: 364 GTTEESETAEPDQETSGEVVDTDSQEVQTESDEDVEADAQDDQSDNVEKPSDHIDDADSS 423 Query: 427 KIRELGVSEE 436 E S+E Sbjct: 424 DHTEDTSSDE 433 >gi|189424726|ref|YP_001951903.1| transcription elongation factor NusA [Geobacter lovleyi SZ] gi|189420985|gb|ACD95383.1| NusA antitermination factor [Geobacter lovleyi SZ] Length = 385 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 176/367 (47%), Positives = 242/367 (65%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + + EK IDR VV+ M ++ AA Y ++ N +TG++ LF + V Sbjct: 7 LKQAIEQIVKEKGIDRQVVIEAMEQAVLSAANKKYRNTRNLEAHYNNDTGEVELFEYVVV 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV++ +ISL AR+ DP ++G + + + DFGR+A Q+AKQVIIQKVREAER+ Sbjct: 67 VEEVQDSYTEISLDEAREMDPECEVGDELGEKIDSGDFGRIAAQTAKQVIIQKVREAERE 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+KD+ EI++G V+R E G++++DLG ++ ++ E + RE RPGDR+++ I D Sbjct: 127 TVFNEYKDRQWEIVTGQVRRFERGDLLIDLGRAEAILSGKEQMPREVYRPGDRIRAIITD 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + +GPQ++LSRTHPQ + KLF EVPEI G+V++ V RDPGSRAK+AV S D I Sbjct: 187 IAMTTKGPQIILSRTHPQMLAKLFEAEVPEIGEGLVEIVNVVRDPGSRAKIAVASHDRDI 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVGMRGSRVQ VV+ELR EKIDI+ WS D A FV NAL PA V KV +DE+ + Sbjct: 247 DPVGACVGMRGSRVQNVVSELRGEKIDIIPWSADIARFVCNALSPAQVVKVFMDEEQRTL 306 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 EVIVP +QLSLAIG+RGQNV LA++LTG IDI E + ++F ++ Sbjct: 307 EVIVPDDQLSLAIGKRGQNVSLAARLTGCRIDIKGEGKVEEGDLEEFASFDGTHVEEEPE 366 Query: 369 DEIIAHL 375 + + Sbjct: 367 EMAVDEE 373 >gi|325957049|ref|YP_004292461.1| transcription elongation factor NusA [Lactobacillus acidophilus 30SC] gi|325333614|gb|ADZ07522.1| transcription elongation factor NusA [Lactobacillus acidophilus 30SC] Length = 395 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 214/370 (57%), Gaps = 2/370 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + GD + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYKQAQNVEVDFDERKGDFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHHDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DED Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEDE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + ++ Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDENSSDSDSEDAADE 363 Query: 366 INVDEIIAHL 375 Sbjct: 364 SQESATNEET 373 >gi|227904178|ref|ZP_04021983.1| transcription elongation factor NusA [Lactobacillus acidophilus ATCC 4796] gi|227868197|gb|EEJ75618.1| transcription elongation factor NusA [Lactobacillus acidophilus ATCC 4796] Length = 400 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 140/394 (35%), Positives = 227/394 (57%), Gaps = 13/394 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 EMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 134 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 194 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V + DE+ Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDEEE 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDSVSK----- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 D + +V+ E A V E A I Sbjct: 369 --EDTDSSEDVVSTE----ESTADVTTEEKAKIT 396 >gi|167758065|ref|ZP_02430192.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704] gi|167663962|gb|EDS08092.1| hypothetical protein CLOSCI_00403 [Clostridium scindens ATCC 35704] Length = 398 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 144/341 (42%), Positives = 226/341 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + EK I ++ +L + +S+ A ++ +G +I++ ++ T D LF Sbjct: 2 NTELLEALNILEEEKDISKETLLDAIENSLLNACKNHFGKADNIKLIMDRTTCDYQLFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+VE+ QISL+ A++ D ++G +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEDVEDKLEQISLEDAKEIDSQYELGDIVQIPIESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R N+ ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNISINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVIEVKEGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 KAASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQ 342 >gi|331007796|ref|ZP_08330909.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330418395|gb|EGG92948.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 336 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 159/333 (47%), Positives = 237/333 (71%), Gaps = 3/333 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AV+ EK +D +V+ + ++ A + Y S I V I+ TGD FR E Sbjct: 4 EILLVAEAVSNEKGVDAEVIFEALELALATATKKRYDEDSTIDVSIDRRTGDYETFRSWE 63 Query: 68 VVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++ Q + + A +++ + G + + + +DFGR+A Q+AKQVI+QKVREA Sbjct: 64 VVDDETLALLGTQFTTEEAIEQNADLVPGDIHREQVENVDFGRIAAQTAKQVIVQKVREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKS 184 ER++ E++DK+GE+ISG+VK+V N+IVDLGN+ +G++ R+E + RE R GDR+++ Sbjct: 124 EREQVVEEYRDKIGELISGSVKKVTRDNIIVDLGNNAEGLLPREELVGREIYRMGDRIRA 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VR E RGPQ+ LSR P+ +V+LF +EVPEI I+++KA +RDPGSRAK+AV ++ Sbjct: 184 MLMEVRSEMRGPQLYLSRACPEMLVELFRIEVPEIAEEIIELKAAARDPGSRAKIAVKTN 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGMRG+RVQAV EL +E+IDI++W ++A FVINA+ PA + +V+DE+ Sbjct: 244 DGRIDPVGACVGMRGARVQAVSNELANERIDIILWDDNAAQFVINAMAPAEIESIVVDEE 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 ++V V ++ L++AIGR GQNVRLAS+LTGW Sbjct: 304 TASMDVAVAEDNLAMAIGRGGQNVRLASELTGW 336 >gi|331701346|ref|YP_004398305.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329128689|gb|AEB73242.1| NusA antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 398 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 143/391 (36%), Positives = 220/391 (56%), Gaps = 1/391 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL A+ EK I ++VV+ + ++ A + YG ++ V + + G++ ++ + Sbjct: 4 ELLGALSALEEEKGIKKEVVIEALEAALVSAYKRNYGQAQNVEVSFDDKKGEMHVYAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + Q+SL A + + ++G + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVDDVVDDQLQVSLDEALEINKGYELGDEIKFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ E+++GTV+R + V V+LG + V+ + + E RP DR+K Y+ Sbjct: 124 ENVFDEYSKYEDELVTGTVERQDTRFVYVNLGKVEAVMGSKDQMPNEVYRPQDRIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +GPQV +SRT + +LF EVPEIY+G V++ +++R+ G RAK+AV S++S Sbjct: 184 KVENATKGPQVFVSRTATGMLKRLFEQEVPEIYDGTVEIVSIAREAGDRAKVAVRSNNSD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VG 306 IDPVG VG RG RVQ +V EL E +DIV W D A+++ N+L PA V V+ D+D Sbjct: 244 IDPVGTAVGPRGQRVQTIVNELHGENMDIVEWDEDDASYIANSLNPAEVIDVIFDDDNER 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + Sbjct: 304 ACTVIVPDYQLSLAIGKKGQNARLAAKLTGFKIDIKSETEAKEILADKAAAASDDTEADE 363 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIAS 397 D+ E E Sbjct: 364 ASDQGDQTEDSTEDAPTDGADVNTNPDESNE 394 >gi|167772658|ref|ZP_02444711.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM 17241] gi|167665136|gb|EDS09266.1| hypothetical protein ANACOL_04039 [Anaerotruncus colihominis DSM 17241] Length = 358 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 145/349 (41%), Positives = 213/349 (61%), Gaps = 3/349 (0%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 ++ + E + + EK I R ++ +A +I A R G D V+INP+TG Sbjct: 7 MNTSNTEFFEALALMEKEKGIPRSLLAEKIATAIGNAIRRDMGASEDSVVDINPDTGRFY 66 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + VV+++ + +I + A D +G +V PL FGR+A Q+AK VI Q Sbjct: 67 VAMRKTVVDDLLDPAQEILPEEAVKYDSGATLGDIVEIPLDTKQFGRIAAQTAKHVIRQG 126 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPG 179 +REAER + + EF + +I++ TV R + GNV ++LG S+ V+ + E + E G Sbjct: 127 IREAERGQLFAEFSSRQHDIVTATVLRTDQVRGNVTLELGKSEAVLPKGEQVPGEEYADG 186 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K Y+ DV ++GP++++SRTHP + +LF MEVPEI++G ++VK++SR+ GSR K+ Sbjct: 187 ARIKVYVVDVVNGEKGPRIMISRTHPGLVKRLFEMEVPEIFDGTIEVKSISREAGSRTKI 246 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+D ++DPVGAC+G +G RV A+V EL EKID+V +S D A F+ AL PA V V Sbjct: 247 AVWSNDENVDPVGACIGPKGQRVSAIVEELGGEKIDVVRYSADPAEFIAAALSPADVVSV 306 Query: 300 VLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +D D V VP QLSLAIG +GQN RLA++LTGW IDI E Sbjct: 307 EVDPDGAKSCRVSVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPESGF 355 >gi|77919153|ref|YP_356968.1| transcription elongation factor NusA [Pelobacter carbinolicus DSM 2380] gi|77545236|gb|ABA88798.1| NusA antitermination factor [Pelobacter carbinolicus DSM 2380] Length = 406 Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats. Identities = 178/397 (44%), Positives = 256/397 (64%), Gaps = 2/397 (0%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 I + V EK IDR V++ + ++ AA Y D+ N G++ LF + VV+E Sbjct: 8 IIEQVVKEKGIDRGVLVEALESAVLSAANKKYRNTRDLEAHFNDGLGEVELFEFVTVVDE 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +I L+ AR+ D +++G + + +F R+A Q+AKQVIIQKVREAER++ Y Sbjct: 68 VVDSYKEIDLEEAREIDEEVEVGDSLGMKIESGNFSRIAAQTAKQVIIQKVREAEREKIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EFKD+VGE+++G V+R E G++IVDLG ++G++ E + REN R GDR + I +V+ Sbjct: 128 NEFKDRVGELVNGIVRRYERGDLIVDLGLAEGLLPHREQVPRENYRQGDRARVLISEVKI 187 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GPQ++LSRTHP + LF EVPEI GIV++KAV+R+ GSR K+AV S D +DPV Sbjct: 188 STKGPQIILSRTHPGLVASLFQFEVPEIAEGIVEIKAVAREAGSRTKIAVASYDPDVDPV 247 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVGMRGSRVQ VV+ELR EKIDIV WSPD FV +L PA VT++ LD D +EVI Sbjct: 248 GACVGMRGSRVQNVVSELRGEKIDIVPWSPDVGRFVCASLAPAEVTRIYLDNDEQALEVI 307 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 VP +QLSLAIG++GQNVRLA++LTGW IDI +E + ++ E ++ + +++ Sbjct: 308 VPDDQLSLAIGKKGQNVRLAARLTGWNIDIKSETRAAEAAKEALGESVA--VEDASSEDV 365 Query: 372 IAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + V+ + E+ + +EE +VE Sbjct: 366 ASEDATVQESPSVDAVLDDASDEVTEVSDSNEEGSVE 402 >gi|238852618|ref|ZP_04643028.1| transcription termination factor NusA [Lactobacillus gasseri 202-4] gi|238834764|gb|EEQ26991.1| transcription termination factor NusA [Lactobacillus gasseri 202-4] Length = 406 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ + Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D Sbjct: 244 IDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDD 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV A AE + ++ S D + E Sbjct: 364 SNVSNEEATESTAEQLEEDSSEDFPNGEDVNSALDDDADKDEE 406 >gi|319401444|gb|EFV89654.1| transcription elongation protein nusA [Staphylococcus epidermidis FRI909] Length = 407 Score = 335 bits (860), Expect = 9e-90, Method: Composition-based stats. Identities = 152/400 (38%), Positives = 233/400 (58%), Gaps = 4/400 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVADEIVN 364 Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEGFDE 403 + L E A + A E ++ Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDKEKTAKTEEDND 404 >gi|187251076|ref|YP_001875558.1| transcription termination factor [Elusimicrobium minutum Pei191] gi|186971236|gb|ACC98221.1| Transcription termination factor [Elusimicrobium minutum Pei191] Length = 463 Score = 335 bits (860), Expect = 9e-90, Method: Composition-based stats. Identities = 166/458 (36%), Positives = 269/458 (58%), Gaps = 29/458 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL+ +++ EK+I RD ++ + D++ A R G + I +INPE GDI F+ Sbjct: 4 NPKELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIKAFQ 63 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +L +VE V N +ISL+ A+ D ++GG +++ L DF R+A Q AKQV+IQKVR Sbjct: 64 VLNIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQKVRG 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER+ Y EFK + GE+I+G+V+R +++VDLG + ++ E I RE G R+K+ Sbjct: 124 IERENTYKEFKPREGEVITGSVRRFSDRDIVVDLGKVEAILPYSEQIKRERYSNGSRIKA 183 Query: 185 YI-------------------------YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEI 219 I + + + QRGP V+LSRT P F+ LF +EVPEI Sbjct: 184 IITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEVPEI 243 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 GIV++KA+ RDPG RAK+ V S D+ +DP+G CVGMRG R++A++ EL E+ID++ + Sbjct: 244 GEGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDLIPY 303 Query: 280 SPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 S D T ++N++ PA V + + + +IVP +QL++AIG+ QN++LAS+LTGW Sbjct: 304 SEDVTTMIMNSIAPARANSVKIISAEEKKALIIVPDDQLAIAIGKDWQNIKLASKLTGWE 363 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 +++ +E + Q + + A LV GF+ VE++A ++ +A++ Sbjct: 364 LEVKSESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHLATV 423 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 +G E++A +I A++YLE ++ ++E V+++ Sbjct: 424 QGIGEKSAAKIIEGAKKYLETQG---EEVLQEEAVNDD 458 >gi|323466337|gb|ADX70024.1| transcription elongation factor NusA [Lactobacillus helveticus H10] Length = 410 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 136/389 (34%), Positives = 221/389 (56%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 21 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 80 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 81 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 140 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ + Sbjct: 141 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQRDQMPNEVYNPQDQIRVLVT 200 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 201 HVGSDSKGVQIVVSRTAPNVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 260 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 261 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 320 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + A Sbjct: 321 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKSTETTA 380 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + EE + +E Sbjct: 381 EEDSSADTDTADEDTTVQAEEKSSEDNTE 409 >gi|15895075|ref|NP_348424.1| transcription elongation factor NusA [Clostridium acetobutylicum ATCC 824] gi|15024772|gb|AAK79764.1|AE007689_2 Transcription terminator NusA [Clostridium acetobutylicum ATCC 824] gi|325509213|gb|ADZ20849.1| transcription elongation factor NusA [Clostridium acetobutylicum EA 2018] Length = 353 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 149/352 (42%), Positives = 224/352 (63%), Gaps = 4/352 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E +Q + EK I +++ S + D++ A + Y + ++RV +N E G+I Sbjct: 2 NQEFIQALKEIVEEKGISEELLFSTIEDALVAAYKKNYAKLTENVHNVRVSMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+E+E+ C+ISL A+ DP + +V + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKKVVQEIEDSICEISLDDAKSIDPKYQLDDIVDIEITPKSFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF +K +II+GTV R + GN+++DLG + ++ E I E+ + Sbjct: 122 IKEAERSLLYDEFSEKEFDIITGTVLRKDKGNILIDLGRIEAILGPSEQIPGEDYIYNSK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K +SR+ GSR K+AV Sbjct: 182 IKLYIVEVKNTTKGAQVVISRTHPGLVKRLFELEVPEIYNGIVEIKGISREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S D ++D +GACVG +G RVQ +V EL++EKIDI+ WS F+ N+L PA V V + Sbjct: 242 YSHDENVDAMGACVGPKGMRVQNIVNELKNEKIDIIKWSKLPEEFISNSLSPAKVLDVYI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 DED IV QLSLAIG+ GQNVRLA++LT W IDI ++ + + Sbjct: 302 DEDTKSARAIVEDNQLSLAIGKEGQNVRLAAKLTEWKIDIKSKSQYDSEVHE 353 >gi|228475002|ref|ZP_04059730.1| transcription termination factor NusA [Staphylococcus hominis SK119] gi|228270987|gb|EEK12375.1| transcription termination factor NusA [Staphylococcus hominis SK119] Length = 408 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 153/415 (36%), Positives = 237/415 (57%), Gaps = 12/415 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKADEIVF 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + + + E E A++ + + Sbjct: 365 SEDKDIE------------IDDINLEETNLTTTELSAEVDETSNEAQDASDNKEE 407 >gi|311110885|ref|ZP_07712282.1| transcription termination factor NusA [Lactobacillus gasseri MV-22] gi|311066039|gb|EFQ46379.1| transcription termination factor NusA [Lactobacillus gasseri MV-22] Length = 406 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ + Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D Sbjct: 244 IDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDD 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV A AE + ++ S D + E Sbjct: 364 SNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 406 >gi|242242549|ref|ZP_04796994.1| transcription elongation factor NusA [Staphylococcus epidermidis W23144] gi|242233976|gb|EES36288.1| transcription elongation factor NusA [Staphylococcus epidermidis W23144] Length = 407 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 152/400 (38%), Positives = 233/400 (58%), Gaps = 4/400 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVADEIVN 364 Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEGFDE 403 + L E A + A E ++ Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEEKTAKTEEDND 404 >gi|229829176|ref|ZP_04455245.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM 14600] gi|229792339|gb|EEP28453.1| hypothetical protein GCWU000342_01261 [Shuttleworthia satelles DSM 14600] Length = 406 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 136/349 (38%), Positives = 215/349 (61%), Gaps = 3/349 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISL 62 +LL+ DA+ E+ I ++ +L + S+ A + Y +++R ++ ETGD + Sbjct: 3 NTDLLEALDALETERGISKEHILEAIEKSLVAACKVTYKFSDNATNLRAVVDRETGDFHV 62 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 F VV+EV N ++SL+ A D D S+++G + L DF R+A +AK ++ Q + Sbjct: 63 FVKKTVVDEVTNPQSEMSLEEAHDIDGSLNVGDTAEEELQSHDFSRIAASTAKNIMKQMI 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 E ER E+ +I++G V+R N+ V+LG D + E + E+ DR+ Sbjct: 123 LEEERKILLDEYIKIEHDIVTGVVQRFIGRNISVNLGKVDAFLPESEQVKGEHYHQSDRI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +V+ +GP++ +SRTHP+ + +LF EV E+ +GIV++KA++R+ GSR K+AV+ Sbjct: 183 RVYVLEVKDAAKGPRIRVSRTHPELVKRLFEEEVTEVKDGIVEIKAIAREAGSRTKMAVW 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D +DP+GACVG+ GSRV A+V EL +EKIDI+ W+ + A + NAL PA V V+ D Sbjct: 243 SNDPDVDPLGACVGVNGSRVNAIVNELHNEKIDIINWNENPAMLIENALSPAKVIAVLAD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 ED +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 303 EDAREAKVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAQEAE 351 >gi|270290314|ref|ZP_06196539.1| transcription termination factor NusA [Pediococcus acidilactici 7_4] gi|270281095|gb|EFA26928.1| transcription termination factor NusA [Pediococcus acidilactici 7_4] Length = 388 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 145/376 (38%), Positives = 221/376 (58%), Gaps = 3/376 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ + EK I + VV+ + ++ A + YG ++ VE N GDI ++ + + Sbjct: 4 EMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ Q+SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++ + E+++G V R + V VDLG + V+ + + I E P D +K Y+ Sbjct: 124 EVIYEKYSQYLDEMVTGEVVRRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RGPQ+ +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++ Sbjct: 184 KVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 ID VG CVG RG R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+ Sbjct: 244 IDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEEEN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + ++D +E I Sbjct: 304 SCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDAAEFVEEDDDEEVADSATEI 363 Query: 367 N--VDEIIAHLLVAEG 380 DE V E Sbjct: 364 ESSADESTVDENVLES 379 >gi|218133589|ref|ZP_03462393.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC 43243] gi|217990964|gb|EEC56970.1| hypothetical protein BACPEC_01458 [Bacteroides pectinophilus ATCC 43243] Length = 393 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 142/380 (37%), Positives = 219/380 (57%), Gaps = 3/380 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD--IRVEINPETGDISLF 63 EL+ DA+ EK I +D+++ + +S+ + +G D I V I+ TGD +F Sbjct: 2 NKELIGALDALEKEKGISKDILIEAIENSLITGCKQHFGITKDDGIVVRIDRNTGDFRVF 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE VE+ QISL+ A + IG ++ + DF R+A Q AK +I+Q++R Sbjct: 62 ITKRVVEHVEDPVEQISLEDAVKINSKAQIGNGINVEIKSEDFSRIAAQKAKGIILQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 E ER Y E+ K +I++G V+R+ + ++LG D V+ E + E P +R+K Sbjct: 122 EEERKSVYSEYAMKEKDIVTGIVQRINGDKISINLGKMDAVLLPKEQVKGEVFVPTERIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V +G V +SR+HP + +LF EV E+ +G V++K ++R+ GSR K+AV+S Sbjct: 182 LYVVSVTDTAKGVIVKVSRSHPDLVKRLFESEVTEVKDGTVEIKGIAREAGSRTKMAVWS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +DPVGACVG+ G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D+ Sbjct: 242 NNPDVDPVGACVGLNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVVSVIADD 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + + + + Sbjct: 302 EEKTAQVVVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSESQAREAGEYEGYN-EESYD 360 Query: 364 QAINVDEIIAHLLVAEGFAD 383 E + L E D Sbjct: 361 DDAEYSENMNDALPDEDIQD 380 >gi|304384867|ref|ZP_07367213.1| transcription termination factor NusA [Pediococcus acidilactici DSM 20284] gi|304329061|gb|EFL96281.1| transcription termination factor NusA [Pediococcus acidilactici DSM 20284] Length = 388 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 145/376 (38%), Positives = 221/376 (58%), Gaps = 3/376 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++ + EK I + VV+ + ++ A + YG ++ VE N GDI ++ + + Sbjct: 4 EMVTALANLEKEKGIKQSVVIEALEAALVSAYKRNYGQAQNVEVEFNERKGDIHVYAVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ Q+SL A + + ++ + + P +FGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VVEEVEDDQLQVSLADALQINRAYELDDEIRFEVTPKNFGRIAAQTAKQVIMQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++ + E+++G V R + V VDLG + V+ + + I E P D +K Y+ Sbjct: 124 EVIYEKYSQYLDEMVTGEVARRDNRYVYVDLGGVEAVMSKQDQIPGEQYEPHDHIKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RGPQ+ +SR+H + +LF E+PEIY+G V++ +V+R+ G RAK+AV S++ Sbjct: 184 KVEYSGRGPQIFVSRSHEGLLKRLFEQEIPEIYDGTVEIMSVAREAGDRAKVAVRSNNPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 ID VG CVG RG R+Q +V EL E +D++ W D A F+ NAL PA V V+ + E+ Sbjct: 244 IDAVGTCVGPRGQRIQTIVNELHGENMDVIEWEDDDAEFISNALNPAEVIDVLFNEEEEN 303 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + ++D +E I Sbjct: 304 SCIVIVPDYQLSLAIGKRGQNARLAAKLTNYKIDIKSETDAAEFVEEDDDEEVADSATEI 363 Query: 367 N--VDEIIAHLLVAEG 380 DE V E Sbjct: 364 ESSADESTVDENVLES 379 >gi|116629468|ref|YP_814640.1| transcription elongation factor NusA [Lactobacillus gasseri ATCC 33323] gi|116095050|gb|ABJ60202.1| Transcription elongation factor [Lactobacillus gasseri ATCC 33323] Length = 423 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 139/403 (34%), Positives = 228/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 21 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 80 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 81 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 140 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ + Sbjct: 141 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMTHNDQLPGENYNPQDKVRVLVT 200 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 201 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 260 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D Sbjct: 261 IDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 320 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 321 KNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDD 380 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV A AE + ++ S D + E Sbjct: 381 SNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 423 >gi|314936573|ref|ZP_07843920.1| transcription termination factor NusA [Staphylococcus hominis subsp. hominis C80] gi|313655192|gb|EFS18937.1| transcription termination factor NusA [Staphylococcus hominis subsp. hominis C80] Length = 408 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 153/415 (36%), Positives = 237/415 (57%), Gaps = 12/415 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +GSRV+AVV EL EKIDIV W D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKADEIVF 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 ++ + + + E E A++ + + Sbjct: 365 SEDKDIE------------IDDINLEETNLTTAELSAEVDETSNEAQDASDNKEE 407 >gi|289450259|ref|YP_003474585.1| transcription termination factor NusA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184806|gb|ADC91231.1| transcription termination factor NusA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 372 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 147/367 (40%), Positives = 225/367 (61%), Gaps = 2/367 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLF 63 +EL++ + E+ ID +++ + +++ A + + + +IR E++ ETGD+ +F Sbjct: 2 NVELIEAIKLLEKERGIDAEILFQSIEEALVSAYKREFDVKSSDNIRAEVDRETGDMQVF 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVVEEV + + Q+SL+ AR P DIG V+ L P DFGR+A +AK VI QK+ Sbjct: 62 LEKEVVEEVADSSLQVSLEEARKFSPDFDIGDVLEYQLSPQDFGRLAAATAKNVINQKLC 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 AER+R EF ++ E+ +G V+R + +VIVD+G ++ ++ +E + EN +++ Sbjct: 122 NAERERIQNEFSSRINELANGVVQRRDRRDVIVDIGRAEAILPGNEQVRGENYDFNKQMR 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI V + P V +SR+HP + KLF EVPEI +G V++ AVSR+ GSR+K+AV S Sbjct: 182 LYILRVNEKMGRPVVYVSRSHPNLVRKLFEHEVPEIKDGTVEIMAVSREAGSRSKIAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ ++DP+GACVG RG RVQAV+ EL E+IDI+ WSP+ F+ NAL PA V V + Sbjct: 242 NNENVDPLGACVGQRGMRVQAVMDELNGERIDIIQWSPNPEEFIANALSPAKVVSVEVAP 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V+VP QL+LAIG+ GQN LA++LTGW IDI +E + N +++ R Sbjct: 302 ESKMAAVVVPDNQLALAIGKEGQNAHLAARLTGWKIDIKSESQVRQNLEQELIHRFDRAA 361 Query: 364 QAINVDE 370 D Sbjct: 362 SEYEADN 368 >gi|70726649|ref|YP_253563.1| transcription elongation factor NusA [Staphylococcus haemolyticus JCSC1435] gi|68447373|dbj|BAE04957.1| transcription termination-antitermination factor [Staphylococcus haemolyticus JCSC1435] Length = 410 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 154/404 (38%), Positives = 235/404 (58%), Gaps = 6/404 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYTEFIDKEDDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DED Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEDNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDARDAGIYPVIESEELAEDIVL 364 Query: 368 VDEIIAH------LLVAEGFADVEELACVKISEIASIEGFDEET 405 + L E A + + + E EE Sbjct: 365 SESDDEDIEIDDVNLEESNLTTAELAADIDETSENNEEADSEEK 408 >gi|229918666|ref|YP_002887312.1| NusA antitermination factor [Exiguobacterium sp. AT1b] gi|229470095|gb|ACQ71867.1| NusA antitermination factor [Exiguobacterium sp. AT1b] Length = 387 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 156/370 (42%), Positives = 221/370 (59%), Gaps = 6/370 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67 LL D +A EK ID+++++ + ++ A R ++VE + TGDI ++ LLE Sbjct: 5 LLTTIDQIAKEKGIDKNIIIDALEQALISAYRRNVANPNEHVKVEFDQVTGDIRVYALLE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE + Q+SL+ A + DP+ ++G + + P DFGRVA +AKQV+ QK+REAER Sbjct: 65 VVERLTQPDQQLSLEEAHEIDPNYELGDFHKEEVTPSDFGRVAAMTAKQVVTQKMREAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYI 186 +R Y F DK EI++G V+R + N+ + L N+ + V+ +E + E+ + DR+K Y+ Sbjct: 125 ERIYNHFADKEDEIMTGIVERFDPRNLYIGLENNIEAVLTPNEQMPNESYQIHDRIKVYV 184 Query: 187 YDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 V +G + +SRTHP + +LF +EVPEI NG V V +VSR+ G R+K+AV S Sbjct: 185 TKVDSTTKGSGAAIQVSRTHPGLLRRLFELEVPEISNGTVDVMSVSREAGDRSKIAVHS- 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +DPVGACVG +G RVQ +V EL EKIDIV WS D FV NAL PA V V ++E Sbjct: 244 -DIVDPVGACVGPKGQRVQTIVDELNGEKIDIVRWSEDPKEFVRNALSPAQVVAVYVNEP 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + D Sbjct: 303 AKSTTVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAEALDLFDTFAEKVESEP 362 Query: 365 AINVDEIIAH 374 I +E+ Sbjct: 363 KIVQNEVEQD 372 >gi|167766535|ref|ZP_02438588.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1] gi|317498935|ref|ZP_07957218.1| transcription termination factor NusA [Lachnospiraceae bacterium 5_1_63FAA] gi|167711658|gb|EDS22237.1| hypothetical protein CLOSS21_01041 [Clostridium sp. SS2/1] gi|291558575|emb|CBL37375.1| transcription termination factor NusA [butyrate-producing bacterium SSC/2] gi|316893768|gb|EFV15967.1| transcription termination factor NusA [Lachnospiraceae bacterium 5_1_63FAA] Length = 395 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 156/402 (38%), Positives = 239/402 (59%), Gaps = 10/402 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK ID+DV++ + +S+ A + +G+ ++ V ++ ETGDI ++ + E Sbjct: 3 ELIAALNQLEKEKGIDKDVIMEAIENSLLAACKRDFGSADNVVVNMDRETGDIYVYAIKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL A+ D ++++G V + P DFGR+A A+ VI+QK++E ER Sbjct: 63 VVDEVYDPALEISLGKAKAIDQNLNLGDTVRIEITPKDFGRIAAMHARSVIVQKIKEEER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 Y F K +I++G V+R NV V L +D ++ + E I E +P +R+K YI Sbjct: 123 RVVYDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFKPTERIKLYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ RGP++L+SRTHP + +LF EV EI +G V++K + R+ GSR K+AV+S+D Sbjct: 183 VEVKETNRGPRILVSRTHPDLVKRLFEKEVAEIQDGTVEIKNIVREAGSRTKMAVWSNDK 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ G+RV A+V +L+ EKIDI+ W+ D F+ NAL P+ V V +D + Sbjct: 243 NVDPVGACVGLNGARVNAIVNDLKGEKIDIINWNEDPCVFIENALSPSKVVSVAVDVEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 EV+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + K E Sbjct: 303 SAEVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQAAEEAAKVSEEPEAD----- 357 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + I L E D E ++E FD E E Sbjct: 358 --EFEIEEDLFNEEINDDFVEDAENTEE--AVEDFDAEDIEE 395 >gi|258645576|ref|ZP_05733045.1| transcription termination factor NusA [Dialister invisus DSM 15470] gi|260402934|gb|EEW96481.1| transcription termination factor NusA [Dialister invisus DSM 15470] Length = 377 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 226/367 (61%), Gaps = 4/367 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LLQ + + +K ++ DVV + + A + G+ + + ++ TG+ ++ V Sbjct: 5 LLQAVNFLVDKKKVEADVVFDALEMVLLTAYKKEMGSNAKTSISLDRTTGEYKIYEEKTV 64 Query: 69 VE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VE E EN +I+++ A+ + G ++ + P DFGRVA Q+AKQV+IQK+RE Sbjct: 65 VEVIDPESENAINEITVENAKKISKDYEAGDMLRVDVTPKDFGRVAAQAAKQVLIQKLRE 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF + G+II+GTVK E V VDLG +G++ E I E +P D++K Sbjct: 125 AERGSIYEEFSGREGDIITGTVKWSESRTVFVDLGRVEGILPFAEQIEGETFQPNDKIKC 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +VR+ +GP+++LSRTHP + +LF MEVPEIY+G V++K+V R+ GSRAK+AV++ Sbjct: 185 YVQEVRKTTKGPEIILSRTHPGLLKRLFEMEVPEIYSGTVEIKSVVREAGSRAKIAVYAM 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D ++DPVGACVG +G RVQ +V EL DEKIDIV W D A ++ NAL PA V V + ++ Sbjct: 245 DPNVDPVGACVGPKGQRVQNIVNELHDEKIDIVRWDEDPAIYIANALSPAKVVSVSVWDE 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+ GQN RLA++LT W IDI +E + + + E + Sbjct: 305 ERSSYVIVPDYQLSLAIGKAGQNARLANKLTNWKIDIKSESQAAEEGFGEEIEEDDDILS 364 Query: 365 AINVDEI 371 I + Sbjct: 365 DIETADT 371 >gi|295693137|ref|YP_003601747.1| transcription termination-antitermination factor nusa [Lactobacillus crispatus ST1] gi|295031243|emb|CBL50722.1| Transcription termination-antitermination factor NusA [Lactobacillus crispatus ST1] Length = 397 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 136/389 (34%), Positives = 218/389 (56%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKTNDTADAADSSE 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + + +D E Sbjct: 364 TSENVESTDDAADVESSDDTTTVEDSSKE 392 >gi|219850522|ref|YP_002464955.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485] gi|219544781|gb|ACL26519.1| NusA antitermination factor [Chloroflexus aggregans DSM 9485] Length = 442 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 146/385 (37%), Positives = 230/385 (59%), Gaps = 5/385 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A + L G ++ V+++P +G + Sbjct: 2 KSDFYAAITQIASERGIPKEAIIDVMERALVSAYKRLLGPNPPAVEVTVKLDPVSGMARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I L AR P + IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEIDLNSARQIKPDVQIGETVLVESTPRDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +E ER Y EF+D+ GE+++ TV+R GNVI+++G ++ +I E ++ + G Sbjct: 122 KEIERSYIYSEFEDREGELVTATVQRNNGPRGNVILEIGKAEAIIPPKEQVANDRYYHGQ 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K + +V+++ RGP+++ SR H + +LF MEVPEIYNG V++K+V+R+PG R K+A Sbjct: 182 RLKVLLLEVKKDDRGPRLIASRAHKNLINRLFEMEVPEIYNGSVEIKSVAREPGLRTKVA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVG+CVGMRG R+Q +V EL EKID+V WS D ++ NAL PA V +V Sbjct: 242 VAARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSSDPREYIANALSPAQVVEVH 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI + + R + Sbjct: 302 LHDHDHTALVIVPDKQLSLAIGKEGQNVRLAAKLTGWRIDIKSASALLEEERAAAEARAE 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVE 385 + + + +AH V + + Sbjct: 362 AEAEQMVIAAELAHAPVEQRIVQAD 386 >gi|307243330|ref|ZP_07525494.1| transcription termination factor NusA [Peptostreptococcus stomatis DSM 17678] gi|306493277|gb|EFM65266.1| transcription termination factor NusA [Peptostreptococcus stomatis DSM 17678] Length = 423 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 158/391 (40%), Positives = 240/391 (61%), Gaps = 9/391 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +Q D + ++ ID+DV+L + ++ A + +G+ ++R+++N ETGDI ++ Sbjct: 2 NTEFIQALDELVRDRGIDKDVLLETIEQALTSAYKKNFGSAQNVRIDMNRETGDIKVYSQ 61 Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + + +I L AR+ +P+ ++G ++ + P DFGR+A Q+AKQ+++QK+R Sbjct: 62 RVVVDESDLYDNFLEIELSEAREINPNYELGDIIEHEVTPKDFGRIAAQTAKQIVVQKIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPG 179 EAER+ Y EF +K E+++G + R + V V +G +GV+ + E I E+ + G Sbjct: 122 EAEREMTYNEFLEKQDELVTGEISRTSSRDGKQIVFVQIGKGEGVLLQSEQIRNEDYKIG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ +V R + PQ+LLSRT+ + +LF MEVPEI GIV +K++SR+ GSR K+ Sbjct: 182 SNMKFYVLEVNRTNKNPQILLSRTNAGLVKRLFEMEVPEIQEGIVHIKSISREAGSRTKM 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D +IDP+GACVG +G+RV+ +V EL DEKIDIV +S D ATF+ AL P+ VT+V Sbjct: 242 AVKSIDENIDPIGACVGTQGARVRNIVDELGDEKIDIVKYSDDPATFIEAALSPSKVTRV 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +DE VIVP QLSLAIG+ GQN RLA++LT W IDI E S ++ Sbjct: 302 FIDEANKSAIVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPE---SEFGPEEEAALL 358 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACV 390 + + E A LV E E A + Sbjct: 359 EEIEKNKIAAEEEAKRLVEEAELKAHEEAEI 389 >gi|224476389|ref|YP_002633995.1| transcription elongation factor NusA [Staphylococcus carnosus subsp. carnosus TM300] gi|222420996|emb|CAL27810.1| putative transcription elongation protein NusA [Staphylococcus carnosus subsp. carnosus TM300] Length = 437 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 149/386 (38%), Positives = 233/386 (60%), Gaps = 3/386 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYEAARNVRVELNMDEGTFHVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + ++ + A +++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVDDVFDDREEVDISTALEKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG ++ V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDIVTGIIDRVDHRYVYVNLGRTEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V +K+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVVIKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G RV+A+V EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGSKGVRVEAIVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDEANQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E S R+ + Sbjct: 305 TTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSE---SDAREAGIYPVPEVEETDDE 361 Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393 V E + +V + E+ Sbjct: 362 VTEDLTEEVVVGQVDEEPEVDVEAEE 387 >gi|328465727|gb|EGF36931.1| transcription elongation factor NusA [Lactobacillus helveticus MTCC 5463] Length = 405 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 136/389 (34%), Positives = 220/389 (56%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 16 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 76 VVDEVQDDRLEVSLKDALAINRGYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ + Sbjct: 136 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 196 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 256 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 315 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + A Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKSTETTA 375 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + EE + +E Sbjct: 376 EEDSSADIDTADEDTTVQAEEKSSEDNTE 404 >gi|293366770|ref|ZP_06613446.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W2(grey)] gi|291319071|gb|EFE59441.1| transcription elongation factor NusA [Staphylococcus epidermidis M23864:W2(grey)] gi|329736653|gb|EGG72919.1| transcription termination factor NusA [Staphylococcus epidermidis VCU045] Length = 407 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 150/402 (37%), Positives = 235/402 (58%), Gaps = 1/402 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364 Query: 368 VDEIIAHL-LVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + V ++ ++ + +E+ E Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAENDEDKKDKTEEDNDTE 406 >gi|329736283|gb|EGG72555.1| transcription termination factor NusA [Staphylococcus epidermidis VCU028] Length = 404 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 152/399 (38%), Positives = 233/399 (58%), Gaps = 2/399 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364 Query: 368 VDEII--AHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + + E + E + E D E Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAENDEDKTEEDNDTE 403 >gi|291460012|ref|ZP_06599402.1| transcription termination factor NusA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417353|gb|EFE91072.1| transcription termination factor NusA [Oribacterium sp. oral taxon 078 str. F0262] Length = 444 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 155/388 (39%), Positives = 224/388 (57%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + + EK I + ++ + S+Q A R+ +G+ ++RV ++PE+ D S+ Sbjct: 2 NTELRDALELLEKEKGIPKQALIEAIELSLQTACRNHFGSADNVRVNVDPESCDFSVIAD 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE V N +I L A+ DP ++G +V P+ FGR+A Q+AK VI+QK+RE Sbjct: 62 KTVVETVSNPIAEIGLSEAKLVDPKYELGDIVQVPVDSRSFGRIATQNAKGVIVQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y E+ E++SG V+R ++IV+LG DG + +E + E L P DR+K Y Sbjct: 122 ERRVLYREYYSMAREVVSGVVERDTGRSIIVNLGRVDGYLSENEQVKGEVLNPTDRIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR +GP+VLLSRTHP+ + KLF E PEI GIV+++A++R+ GSR K+AV S+D Sbjct: 182 VVEVRDSPKGPRVLLSRTHPELVKKLFEEEAPEIREGIVEIRAIAREAGSRTKMAVLSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG+ G+RV AVV ELR EKIDI+ + + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGSCVGLDGTRVNAVVEELRGEKIDIINYDENPAYLIENALSPAKVIAVIADPDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RL+++LTG+ IDI +E + D Sbjct: 302 KDAMVIVPDTQLSLAIGKEGQNARLSAKLTGYKIDIKSESQAQEQGIFDEMGIDYRGEGE 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKIS 393 ++ E F E Sbjct: 362 EGEEDYDFPEDDGEEFTGESEQEDFSED 389 >gi|46446396|ref|YP_007761.1| transcription elongation factor NusA [Candidatus Protochlamydia amoebophila UWE25] gi|46400037|emb|CAF23486.1| putative transcription termination-antitermination factor nusA [Candidatus Protochlamydia amoebophila UWE25] Length = 424 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 150/420 (35%), Positives = 247/420 (58%), Gaps = 10/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I + + EK I R++V+S + +S+Q AAR S++ V I+P+TG+I ++ Sbjct: 2 NKDLIAIFEYLEREKGIKRELVISAIEESLQAAARKSVSGASNVTVTIHPKTGNIDVYCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V++VE + +ISL AR+ DP +IG + + P DFGR+A Q A+Q+I QK+R A Sbjct: 62 KEIVDDVEVPSQEISLLAAREIDPDAEIGQFIDIVVTPKDFGRIAAQKARQIITQKLRGA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ ++ E+ISGT+KR N+I+DLG + ++ E E + G++V + Sbjct: 122 ERDVIYEEYRHRINELISGTIKRFVRGSNLIIDLGKVEAILPTREYPKTEKYQVGEKVLA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V E G +V+LSR+HP+F+ +L EVPE+ +G + + + RD G R KL V S Sbjct: 182 LVLEVKDTENGGAEVILSRSHPEFVKQLLVQEVPEVSDGTIIIDKIVRDAGYRTKLTVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRG+RV+ +V EL +EKIDI+ +S D + NAL P + K+ L+E Sbjct: 242 TDLKVDPVGACVGMRGNRVKNIVRELHNEKIDIIPFSNDPIELLQNALSPIEIRKINLNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + G I ++V + + IG++G N RL S+L G+ +++ + + + NE Sbjct: 302 EDGIISIVVEDDDFAAVIGKKGMNARLNSRLIGYDLEVQRMTDYNRAMAIERNELAATDD 361 Query: 364 QAI--------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + ++ +I LV G+ ++ L E+A+I G E A +I + R+ Sbjct: 362 PTLDQPLVGIEGINSLIFDHLVDAGYHTLKSLLTATPKELAAIPGISLEMADKILEQIRK 421 >gi|329724329|gb|EGG60841.1| transcription termination factor NusA [Staphylococcus epidermidis VCU144] Length = 407 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 151/402 (37%), Positives = 235/402 (58%), Gaps = 1/402 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVADEIVN 364 Query: 368 VDEIIAHL-LVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + V ++ ++ E +E+ E Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEDKKEKTEEDNDTE 406 >gi|255524231|ref|ZP_05391190.1| NusA antitermination factor [Clostridium carboxidivorans P7] gi|296185352|ref|ZP_06853762.1| transcription termination factor NusA [Clostridium carboxidivorans P7] gi|255512056|gb|EET88337.1| NusA antitermination factor [Clostridium carboxidivorans P7] gi|296050186|gb|EFG89610.1| transcription termination factor NusA [Clostridium carboxidivorans P7] Length = 368 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 233/367 (63%), Gaps = 4/367 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G +++V +N E G+I Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYINQGGNNQNVKVTMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ V++EV + +ISL+ A+ DP+ DI VVS + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKTVIDEVFDEINEISLEEAKSIDPNYDIDDVVSIEVTPKKFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y +F +K +II+G V R + NV+VDLG ++ V+ +E + E D+ Sbjct: 122 IKEEERRIVYNDFIEKEDDIITGAVIRKDKNNVLVDLGKTEAVLGPNEQMPGEKYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V++K+++R+ GSR K+AV Sbjct: 182 IKLYIVEVKNTTKGAQIVISRTHPGLVKRLFELEVPEIFDGTVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ NAL PA V V L Sbjct: 242 NSNDENVDPMGACVGPKGIRVQNIVNELKNEKIDIIKWSKLPEEYIANALSPAKVIDVTL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + + + Sbjct: 302 DEENKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQVETVPEVETVSQAED 361 Query: 362 FMQAINV 368 ++ Sbjct: 362 ISDEEDI 368 >gi|27467860|ref|NP_764497.1| transcription elongation factor NusA [Staphylococcus epidermidis ATCC 12228] gi|251810697|ref|ZP_04825170.1| transcription elongation factor NusA [Staphylococcus epidermidis BCM-HMP0060] gi|282876302|ref|ZP_06285169.1| transcription termination factor NusA [Staphylococcus epidermidis SK135] gi|27315405|gb|AAO04539.1|AE016747_36 transcription termination-antitermination factor [Staphylococcus epidermidis ATCC 12228] gi|251805857|gb|EES58514.1| transcription elongation factor NusA [Staphylococcus epidermidis BCM-HMP0060] gi|281295327|gb|EFA87854.1| transcription termination factor NusA [Staphylococcus epidermidis SK135] Length = 407 Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats. Identities = 153/401 (38%), Positives = 236/401 (58%), Gaps = 3/401 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---FFMQ 364 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + D ++ + E ELA + D +T Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEDKKDKTEEDNDT 405 >gi|58337537|ref|YP_194122.1| transcription elongation factor NusA [Lactobacillus acidophilus NCFM] gi|58254854|gb|AAV43091.1| transcription termination-antitermination factor [Lactobacillus acidophilus NCFM] Length = 389 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 132/360 (36%), Positives = 217/360 (60%), Gaps = 2/360 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I++DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLEKNKGIEQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 NHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT--KVVLDEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + ++ NAL PA V + DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDYIANALNPAEVIAVQFGEDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + ++ + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSTDSVSKEDTDS 363 >gi|210622610|ref|ZP_03293270.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275] gi|210154111|gb|EEA85117.1| hypothetical protein CLOHIR_01218 [Clostridium hiranonis DSM 13275] Length = 390 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 145/364 (39%), Positives = 228/364 (62%), Gaps = 2/364 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L + + K ID++V++ + ++ A + +G ++ VE + + GDI ++ Sbjct: 2 NQEFLNALNEIVETKGIDKEVLIDTIEQALLTAYKKNFGQARNVEVEFDRDNGDIKVYST 61 Query: 66 LEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+E + + +I L AR PS +IG V+ + + P +FGR+A Q+AKQV++Q++R Sbjct: 62 RTVVDESDYYDSFLEIELSEARKISPSYEIGDVIRNEVTPSNFGRIAAQTAKQVVVQRLR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF ++ EI+ G + R V VDLG +GV+ R E I E + G R+K Sbjct: 122 EAEREIVYNEFMERESEIVDGEITRATPSVVYVDLGKIEGVMPRSEKIDNETYKEGQRIK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V++ +GPQ+++SR++ + +LF +EVPEI GIVQ+K+++R+ GSR K+AV S Sbjct: 182 VYVVEVKKGSKGPQIIVSRSNKGLVGRLFELEVPEIEQGIVQIKSIAREAGSRTKMAVKS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDP+GACVG +GSRV+ +V EL DEKIDI+ +S D A ++ +L P+ V KV ++E Sbjct: 242 LDDKIDPIGACVGPKGSRVKNIVDELGDEKIDIIKYSDDFAEYISASLSPSKVVKVEVNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E + + ++ + Sbjct: 302 EEKSALVVVPDYQLSLAIGKDGQNARLAAKLTGWKIDIKSESQYEEDLANGVYDKKEESE 361 Query: 364 QAIN 367 N Sbjct: 362 LEFN 365 >gi|161507684|ref|YP_001577638.1| transcription elongation factor NusA [Lactobacillus helveticus DPC 4571] gi|160348673|gb|ABX27347.1| transcription termination-antitermination factor [Lactobacillus helveticus DPC 4571] Length = 393 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 136/389 (34%), Positives = 221/389 (56%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLEKTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERRGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + ++ + + + E P D+++ + Sbjct: 124 SHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAIMPQCDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQIVVSRTAPDVVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E ID+V + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDVVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E +K + A Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDEKSDDSAKSTETTA 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + EE + +E Sbjct: 364 EEDSSADTDTADEDTTVQAEEKSSEDNTE 392 >gi|309389230|gb|ADO77110.1| NusA antitermination factor [Halanaerobium praevalens DSM 2228] Length = 408 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 153/403 (37%), Positives = 247/403 (61%), Gaps = 4/403 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +Q D + +K I ++V+L + ++ A + +G+ ++R+EI+ E G++ +F Sbjct: 2 NIEFIQALDDIEKDKGISKEVLLDAIETALVSAYKKDFGSKDNVRIEISAEAGEVKVFSR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEVEN +ISL A + D IG +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KEVVEEVENKNSEISLIEAENIDSKYTIGDIVEIEVTPANFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + ++K+K E+I+GT++R N+++D+G ++ ++ E I+ E G+R+K Y Sbjct: 122 ERDVIFDQYKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGERYEIGERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V +GP++L+SRTHP + +LF +EVPEI+ G+V++K V+R+ G R+K+AV S++ Sbjct: 182 VVEVSTTNKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKEVAREAGQRSKMAVSSTE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVG+CVG +G RVQAVV +L +EKIDIV W D FV NAL PA V V +++ Sbjct: 242 KQVDPVGSCVGPKGMRVQAVVDQLNNEKIDIVKWDEDPEVFVANALNPAEVISVDINKSE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+ GQN RLA++LTGW +DI E E +K ++ + Sbjct: 302 KIARVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESEIEAEIEK---KKIEKNASE 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + A K++E I+ + + + Sbjct: 359 LAKSLDKFEENIEAEMETDNLEAAEKVNENL-IDKMENDLDEQ 400 >gi|329769654|ref|ZP_08261058.1| transcription termination factor NusA [Gemella sanguinis M325] gi|328838409|gb|EGF88018.1| transcription termination factor NusA [Gemella sanguinis M325] Length = 343 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 142/336 (42%), Positives = 213/336 (63%), Gaps = 2/336 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + +L+ A +P+ ++G + + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEEEDLPSDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K YI Sbjct: 124 EILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGEEYVPQTPIKVYIA 183 Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V R P VL SR+HP+F+ +LF +EVPEIYNG+V++K+VSR+ G R K+AV+S D Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYNGVVEIKSVSREAGDRTKIAVYSED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RV +V+EL EKIDI+ W D F+ NAL PA V ++ +DE+ Sbjct: 244 KNIDPVGACVGNKGERVNRIVSELNGEKIDIITWDADPVKFITNALAPAKVEEISIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +QLSLAIG++GQNVRLA++LTGW IDI Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339 >gi|88608874|ref|YP_506405.1| N utilization substance protein A [Neorickettsia sennetsu str. Miyayama] gi|88601043|gb|ABD46511.1| N utilization substance protein A [Neorickettsia sennetsu str. Miyayama] Length = 537 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 186/549 (33%), Positives = 299/549 (54%), Gaps = 56/549 (10%) Query: 3 SANRLELLQIADAV----AYEKSIDRDVVLSVMADSIQK-AARSLYGTMSDIRVEINPET 57 S N L LQI +++ E + D + + + + YG I VEI+ ++ Sbjct: 4 SNNGLSNLQIVESINSVAEKE-GLSPDTLFRAIGIELAHEIGKRQYG-DHRIFVEIDKKS 61 Query: 58 GDISLFRLLEVVEEVE----------------------------NYTCQISLKVARDRDP 89 G+I + + L VVE+ + +Y I L AR + P Sbjct: 62 GEILVSKRLLVVEDSDKARMLEQMEVTTEESDDLPSSFRAEEKVHYDGVIDLSTARLKYP 121 Query: 90 SID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV- 146 SI+ G ++++ LP G + + K + + + R++QY +K +VGEI++G V Sbjct: 122 SIEHKAGDIITEHLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVK 181 Query: 147 ----KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSR 202 + ++IVD+ +G++ + E+ RPG+RVK I V PQ+LLSR Sbjct: 182 KSIDFKTGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVVKPQILLSR 241 Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRV 262 + F+ +LF +VPEIY+ +V+++ V+RD GSR+K+AVFSSD +IDPVGAC+GM GSR+ Sbjct: 242 SSGSFVAQLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRI 301 Query: 263 QAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIG 322 AVV EL EKIDIV +S D+ATF+ NAL+P K+ ++E+ +IE++VP E +SL IG Sbjct: 302 NAVVNELHGEKIDIVEYSNDTATFLANALKPIRPVKITVNEETKKIELVVPDESVSLVIG 361 Query: 323 RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 R GQNV L S L G+ ++++++ E S + ++F T F++A+NV+E+IA LLV EGF+ Sbjct: 362 RGGQNVYLLSSLLGYRVEVLSDAEFSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFS 421 Query: 383 DVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPG 442 VEE+A S +A IEGFD++ A EI+ RA EY+ ++ + + + ++ Sbjct: 422 TVEEIADCNTSRLAFIEGFDKDIAEEIRSRAVEYVNEQPKRVRALAEKYKANPNMLALSS 481 Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMI 502 D+ + L +G+ +E +A S D+L + G + E +I Sbjct: 482 FDTGLLEVLFSSGLTDLEKVAELSCDELREVIGDNGFGVPLL--------------EQLI 527 Query: 503 IHARYKMGW 511 I +R +GW Sbjct: 528 IRSRKTLGW 536 >gi|300854498|ref|YP_003779482.1| transcription elongation protein [Clostridium ljungdahlii DSM 13528] gi|300434613|gb|ADK14380.1| transcription elongation protein [Clostridium ljungdahlii DSM 13528] Length = 354 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 141/353 (39%), Positives = 229/353 (64%), Gaps = 4/353 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y +++V +N E G+I Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYMGHGAGSQNVKVTMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +IS++ A+ D S ++G + + + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKNVVEEVCDKFGEISVEDAKSMDSSYEVGDIANIEVTPRKFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y +F +K +II+GTV R + NV++DLG ++ V+ +E I E D+ Sbjct: 122 IKEEERRIIYSDFAEKEDDIITGTVIRKDKNNVLIDLGKTEAVLGPNEQIPGEKYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G Q+++SRTHP + +LF +EVPEI++G V +K+++R+ GSR K+AV Sbjct: 182 LKLYIIEVKNTTKGAQIVISRTHPGLIKRLFELEVPEIFDGTVDIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS ++ N+L PA V V L Sbjct: 242 HSNDENVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKLPEEYIANSLSPAKVLDVDL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +ED+ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + +++ Sbjct: 302 NEDIKFAQIVVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQVETQNEEN 354 >gi|57866748|ref|YP_188415.1| transcription elongation factor NusA [Staphylococcus epidermidis RP62A] gi|57637406|gb|AAW54194.1| N utilization substance protein A, putative [Staphylococcus epidermidis RP62A] Length = 407 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 152/401 (37%), Positives = 235/401 (58%), Gaps = 3/401 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ ++G + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+ G + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---FFMQ 364 V+VP QLSLAIG+RGQN RLA++LT W IDI +E + E + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIESEEVADEIVN 364 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + D ++ + E ELA + D +T Sbjct: 365 SGDEDVEFDNVNLEETNLTSTELAAETDEDKKDKTEEDNDT 405 >gi|227878819|ref|ZP_03996726.1| transcription elongation factor NusA [Lactobacillus crispatus JV-V01] gi|227861567|gb|EEJ69179.1| transcription elongation factor NusA [Lactobacillus crispatus JV-V01] Length = 407 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 14 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 134 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 194 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 254 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LT + IDI E E +K + Sbjct: 314 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAADSSE 373 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + + +D E Sbjct: 374 TSENVESTDDAADVESSDDTTTVEDSSKE 402 >gi|302874660|ref|YP_003843293.1| NusA antitermination factor [Clostridium cellulovorans 743B] gi|307690726|ref|ZP_07633172.1| transcription elongation factor NusA [Clostridium cellulovorans 743B] gi|302577517|gb|ADL51529.1| NusA antitermination factor [Clostridium cellulovorans 743B] Length = 356 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 145/345 (42%), Positives = 223/345 (64%), Gaps = 4/345 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 + L + EK I D + + D++ A + Y T + +V +N ETGDI Sbjct: 2 NADFLLALKEIVKEKGISEDQLFETIEDAMVAAYKKNYSKGSETNQNFKVTMNRETGDIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +F ++VE V N +I+L+ A++ DP +IG +V + P DFGRVA Q+AKQ++IQ+ Sbjct: 62 VFSRKDIVENVLNPVNEITLEEAKNYDPRYEIGEIVDIEVTPKDFGRVAAQAAKQLVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y EF +K +II+GTV R + NV+V++G + V+ E I E ++ Sbjct: 122 IKEAERNLIYEEFAEKEFDIINGTVIRKDKKNVLVNIGRIETVLNESEQIPGEQYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V++ +GP +++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LKLYVVEVKKTSKGPSIVVSRTHPNLVKRLFEIEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL +EKIDI+ W+ ++ N+L PA V + Sbjct: 242 YSNDEDVDAMGACVGSKGLRVQNIVNELGNEKIDIIKWNKLPEEYIANSLSPAKTLDVSI 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 DE +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 DEQNKCAKVIVDDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQ 346 >gi|314933445|ref|ZP_07840810.1| transcription termination factor NusA [Staphylococcus caprae C87] gi|313653595|gb|EFS17352.1| transcription termination factor NusA [Staphylococcus caprae C87] Length = 407 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 152/397 (38%), Positives = 233/397 (58%), Gaps = 4/397 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+ G + V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNFGRIEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSEKPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEVADEIVN 364 Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEG 400 + L E A + + E Sbjct: 365 TGDEDVEFDDVNLEESNLTTAELAAETDEEKESDAEE 401 >gi|223044244|ref|ZP_03614281.1| transcription termination factor NusA [Staphylococcus capitis SK14] gi|222442394|gb|EEE48502.1| transcription termination factor NusA [Staphylococcus capitis SK14] Length = 407 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 153/397 (38%), Positives = 236/397 (59%), Gaps = 4/397 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K Y+ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSDNAD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N Sbjct: 305 TIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEVADEIVN 364 Query: 368 VDEIIAH----LLVAEGFADVEELACVKISEIASIEG 400 + L E A + + E Sbjct: 365 TGDEDVEFDDVNLEESNLTTAELAAETDEEKDSDAEE 401 >gi|254519187|ref|ZP_05131243.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA] gi|226912936|gb|EEH98137.1| transcription elongation factor NusA [Clostridium sp. 7_2_43FAA] Length = 360 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 147/359 (40%), Positives = 232/359 (64%), Gaps = 4/359 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDIS 61 E + + +K I D++ S + D++ A + Y + +++V IN ETG+I Sbjct: 2 NQEFIGALKEIVKDKGISEDLIFSTIEDALVAAYKKNYASPTTSAQNVKVSINRETGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVE+V + +ISL+ A++ P D+ +V + P +FGRVA Q AK V+ Q+ Sbjct: 62 VYAQKVVVEDVYDDVTEISLEEAKEVSPRYDLDDIVDLEVTPKNFGRVAAQLAKGVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 +REAER+ Y E+K+ +II+GTV R + GNV V+LG + I +E I RE + ++ Sbjct: 122 IREAERNIVYSEYKELEYDIITGTVLRKDKGNVFVNLGRIETSIGPNEQIPREEYKFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ +V+ +G Q+L+SRTHP + +LF +EVPEIY G+V++K++SR+ GSR+K+AV Sbjct: 182 VKLYVVEVKNGSKGAQILVSRTHPGLVKRLFELEVPEIYEGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DP+GACVG +G+RVQ +V EL+ EKIDI+ WS + F+ +L PA V +VV Sbjct: 242 YSNDENVDPMGACVGPKGTRVQNIVNELKGEKIDIIKWSKNPEEFIAASLSPAKVLEVVA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 E+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + +++ E + Sbjct: 302 CEETKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQSDALKEETVEETIE 360 >gi|160892797|ref|ZP_02073587.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50] gi|156865838|gb|EDO59269.1| hypothetical protein CLOL250_00328 [Clostridium sp. L2-50] Length = 393 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 147/402 (36%), Positives = 232/402 (57%), Gaps = 15/402 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + + EK+I +D++L + S++ A + + T +I V ++ ETG+ ++ E Sbjct: 3 EIIEALNQLEKEKNISKDILLDAIERSLKAACKKDFDTDENIDVVMDRETGEFHVYAKKE 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE QISL+ A+ + D+G +++ + DFGR+A Q A+ VI+Q + E+ER Sbjct: 63 VVEEVERPATQISLEKAKMMNSKYDLGDIINIEITTKDFGRIAAQRARNVIVQAINESER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 D Y F K +II+G V+R N+ V L ++ +++ E + E GDR+K Y+ Sbjct: 123 DAIYDHFYTKEKDIITGIVQRYVGNNINVSLDDKTEAILKESEMVPGEVYNRGDRIKLYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V++ RGP++ +SRTHP + +LF EV EI +G V++K+ R+ GSR+K+AV+S D Sbjct: 183 TEVKKGSRGPKITVSRTHPDLVKRLFEKEVTEIADGTVEIKSSCREAGSRSKIAVYSHDE 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ GSRV VV +L EKIDI+ W + A F+ NAL P+ V V +D + Sbjct: 243 NVDPVGACVGVNGSRVNNVVEDLNGEKIDIICWDENPAIFIKNALSPSEVIAVDVDLNEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 V+VP QLSLAIG++GQN RLA++LTG+ IDI +E + + Sbjct: 303 SAFVVVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKSESQAEEMGYFSEENDDYKEPEQ- 361 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 E F +++++ E E D E E Sbjct: 362 -----------EEAFDNIDDIVDGSYEESL--EQQDTEKVKE 390 >gi|256843341|ref|ZP_05548829.1| transcription termination factor NusA [Lactobacillus crispatus 125-2-CHN] gi|256849840|ref|ZP_05555271.1| transcription termination-antitermination factor [Lactobacillus crispatus MV-1A-US] gi|262046914|ref|ZP_06019874.1| transcription termination factor NusA [Lactobacillus crispatus MV-3A-US] gi|256614761|gb|EEU19962.1| transcription termination factor NusA [Lactobacillus crispatus 125-2-CHN] gi|256713329|gb|EEU28319.1| transcription termination-antitermination factor [Lactobacillus crispatus MV-1A-US] gi|260572896|gb|EEX29456.1| transcription termination factor NusA [Lactobacillus crispatus MV-3A-US] Length = 397 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 216/389 (55%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +DV++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENTKGIKQDVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LT + IDI E E +K + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAADSSE 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + + +D E Sbjct: 364 TSENVESTDDAADVESSDDTTTVEDSSKE 392 >gi|293381214|ref|ZP_06627222.1| transcription termination factor NusA [Lactobacillus crispatus 214-1] gi|290922254|gb|EFD99248.1| transcription termination factor NusA [Lactobacillus crispatus 214-1] Length = 397 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 134/389 (34%), Positives = 216/389 (55%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + K I +D+++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLENTKGIKQDIIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRLEVSLKDALTINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V +GN + V+ + + E P D+++ + Sbjct: 124 KHIIDEYSQYEDELVTGTVERRDNRFVYVKIGNVEAVMPHRDQMPNEVYNPQDQIRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S+D + Sbjct: 184 HVGSDSKGAQITVSRTAPDMVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKMAVKSNDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 IDPVG CVG +G+RVQ VV EL E IDIV + D + F+ NAL PA V V DE+ Sbjct: 244 IDPVGTCVGQKGARVQNVVNELGGENIDIVKYEEDPSDFIANALNPAEVIAVQFGDDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG++GQNVRLA++LT + IDI E E +K + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTSYKIDIRPESEVEFVDEKTNDTADAADSSE 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + + +D E Sbjct: 364 TSENVESTDDAADVESSDDTTTVEDSSKE 392 >gi|301167102|emb|CBW26681.1| transcription pausing; L factor [Bacteriovorax marinus SJ] Length = 467 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 171/427 (40%), Positives = 265/427 (62%), Gaps = 4/427 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ + + E+ I++D+V+ + + AR YG + N DI +++ Sbjct: 4 ELGRVIETLGKERGIEKDIVVKAVEQAFLVTARKKYGIQGEYETRYNDGDDDIEIYQYKN 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +I+L A++ D ++IG + + +F RV VQ+A+Q+I QKVR+AER Sbjct: 64 VVDEVRDPIVEITLADAKELDEEVEIGDQIGIKIENPNFSRVDVQTARQIIFQKVRDAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EFK K GE+++G +R E GN++VDLG +D V+ R E I EN +PGDR+++++ Sbjct: 124 EILFAEFKHKEGELVTGIARRYERGNIVVDLGKADAVLSRREVIPGENFKPGDRIQAFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V RGP++ LSRT P F+VKLF +EVPEI +G +++K+ +R+PG RAK+AV S D Sbjct: 184 EVVMTNRGPEIRLSRTSPLFLVKLFELEVPEIQDGTIEIKSAAREPGQRAKIAVTSVDKD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGACVGM+GSRVQ VV EL+ EKIDIV W+ D TF AL P+ +T + +D + Sbjct: 244 IDPVGACVGMKGSRVQNVVNELQGEKIDIVKWADDVDTFARAALAPSEITNIQIDHEDHT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V+V ++QLSLAIGRRGQNVRLA+ L+G+ I+II++ + QK Q + Sbjct: 304 MDVVVEEDQLSLAIGRRGQNVRLAAMLSGYKINIISKTKLQERIQKSVANLVQIS----S 359 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 + + +A ++V G + ++A +E+A + D E A I ++ +I LQ Sbjct: 360 ITDTLAQVMVQNGIQAIGDIAAADATELAELLEVDAEQATGIINDTIAAIDAGNIQLQAD 419 Query: 428 IRELGVS 434 E VS Sbjct: 420 EEEELVS 426 >gi|257425320|ref|ZP_05601745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 55/2053] gi|257427981|ref|ZP_05604379.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430614|ref|ZP_05606996.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus 68-397] gi|257433374|ref|ZP_05609732.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus E1410] gi|257436216|ref|ZP_05612263.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M876] gi|282914043|ref|ZP_06321830.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M899] gi|282924088|ref|ZP_06331764.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C101] gi|293501075|ref|ZP_06666926.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 58-424] gi|293510037|ref|ZP_06668745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M809] gi|293526623|ref|ZP_06671308.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M1015] gi|257271777|gb|EEV03915.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274822|gb|EEV06309.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 65-1322] gi|257278742|gb|EEV09361.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus 68-397] gi|257281467|gb|EEV11604.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus E1410] gi|257284498|gb|EEV14618.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M876] gi|282314060|gb|EFB44452.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C101] gi|282322111|gb|EFB52435.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M899] gi|290920695|gb|EFD97758.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus M1015] gi|291096080|gb|EFE26341.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 58-424] gi|291466981|gb|EFF09499.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus M809] Length = 391 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 151/386 (39%), Positives = 233/386 (60%), Gaps = 1/386 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAHEAGIYPVVEAEKVTEEDVA 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393 +++ E DV V+ Sbjct: 365 LEDADTTE-STEEVTDVSVETNVEKE 389 >gi|239636256|ref|ZP_04677258.1| transcription termination factor NusA [Staphylococcus warneri L37603] gi|239597611|gb|EEQ80106.1| transcription termination factor NusA [Staphylococcus warneri L37603] Length = 410 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 151/400 (37%), Positives = 237/400 (59%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K ++ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVFVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVYSDNPE 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + +N Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDAREAGVYPVIESEEIADEVVN 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 + A + ++E DE T Sbjct: 365 TGDEDIEFEDVNLEESNLTTAELAAETDETLEDTDEVTTE 404 >gi|266625027|ref|ZP_06117962.1| transcription termination factor NusA [Clostridium hathewayi DSM 13479] gi|288863082|gb|EFC95380.1| transcription termination factor NusA [Clostridium hathewayi DSM 13479] Length = 401 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 222/345 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + + E +I +D +L + +S+ A ++ +G +++V +N ET D S++ Sbjct: 2 NKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEVE+ QISL A+ DP DIG +V P+ FGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Y ++ + E+++G V+R NV ++LG D ++ E + E + +R+K Y Sbjct: 122 GRKALYNDWYCQEKEVVTGIVQRYLGKNVSINLGKVDAILNETEMVKGEVFKATERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++ +SRTHP + +LF EV E+ +G V++KA++R+ GSR K+AV S+D Sbjct: 182 VLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ G+RV ++V ELR EKIDI+ W + A + NAL PA V VV DE+ Sbjct: 242 QNVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADEES 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 302 REAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAREM 346 >gi|295698482|ref|YP_003603137.1| transcription termination factor NusA [Candidatus Riesia pediculicola USDA] gi|291156972|gb|ADD79417.1| transcription termination factor NusA [Candidatus Riesia pediculicola USDA] Length = 390 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 145/331 (43%), Positives = 224/331 (67%), Gaps = 2/331 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + + V+ EKSI R+ + + +I A + D+RV IN +TGD FR Sbjct: 2 NKEILTVVELVSNEKSIPREKIFEALEIAIATATKKKSVQNIDVRVSINQKTGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ A+ +P +++G + + + F R+A Q+AKQVI QKVREA Sbjct: 62 WLVVKEVVQPTLEITLEAAQFENPRVELGHYLEYRIRSIQFDRIATQTAKQVIFQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKS 184 ERD +F ++ GE++SG VK+V + I D+G N + ++ +++ + REN R DR+K Sbjct: 122 ERDIVVQQFSERSGEMLSGIVKKVNKDSTIFDIGQNIEAIVSKEDMLPRENFRINDRIKG 181 Query: 185 YIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YD+R++ R PQ+++SRT + +++LF +EVPEIY GIV++K + RDPG+R+K+AV + Sbjct: 182 VLYDIRQDSRGRPQLIVSRTSKRMLIELFRLEVPEIYEGIVEIKIIVRDPGTRSKMAVIT 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D IDPVGACVGMRGSRVQ++ EL E+ID+++W+ + A F INA+ PA V+ +++DE Sbjct: 242 NDKRIDPVGACVGMRGSRVQSISNELCGERIDVILWNENLARFTINAMAPAEVSSIIVDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 +++ V + L+ AIGR GQNVRLASQL Sbjct: 302 KKHSVDIAVEERNLAQAIGRNGQNVRLASQL 332 >gi|315924374|ref|ZP_07920596.1| transcription termination factor NusA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622253|gb|EFV02212.1| transcription termination factor NusA [Pseudoramibacter alactolyticus ATCC 23263] Length = 411 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 140/400 (35%), Positives = 235/400 (58%), Gaps = 6/400 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E L D + EK I+++ ++ + SI++A R YG+ ++ V + +G+I ++ Sbjct: 2 NAEFLAALDVLEKEKGINKEELIEAIESSIEQAYRKNYGSEQNVEVRFDRSSGEIQVYTT 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + + +L A D + +IG ++ + P FGR+A Q+AKQ+I QK++E Sbjct: 62 WLVVDEVMDPDKEKTLAEALAIDEAAEIGQMIEKKIAPRHFGRIAAQNAKQMIYQKIKEQ 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y F ++ E+++G + V+ V VD+G++ G++ E I E+ + G R++ Y Sbjct: 122 ERKNIYDTFIERQDEVVTGKIDHVDRRMVYVDIGDATGLMPLSEQIPTEHYKAGQRIRVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V+ +GP++++SRTH + +L EVPEIY+G+V V++++R+ GSR+K+AV S+D Sbjct: 182 ITSVKETSKGPEIMVSRTHSGLLKRLLEEEVPEIYDGVVDVESIAREAGSRSKIAVKSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S++DPVG+CVG RG+R+Q ++ EL EKID++ ++ D F+ NAL PA V +V+ + Sbjct: 242 STVDPVGSCVGYRGTRIQNIIDELGGEKIDVIRYNEDIHEFIANALSPANVIEVLANPRD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + +V Q SLAIG+ GQNVRLA +LTGW IDI + + ++ N R +F Sbjct: 302 KQAYAVVDDFQFSLAIGKEGQNVRLAVRLTGWKIDIKSASDFQAMLDENPNLREEFS--- 358 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E LV + +++E+ + D ET Sbjct: 359 ---QEKETEKLVDDILQEMDEVLSDDAGAGLLDDDSDTET 395 >gi|153954053|ref|YP_001394818.1| transcription elongation factor NusA [Clostridium kluyveri DSM 555] gi|219854666|ref|YP_002471788.1| hypothetical protein CKR_1323 [Clostridium kluyveri NBRC 12016] gi|146346934|gb|EDK33470.1| NusA [Clostridium kluyveri DSM 555] gi|219568390|dbj|BAH06374.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 139/352 (39%), Positives = 230/352 (65%), Gaps = 4/352 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y + +++V +N E G+I Sbjct: 2 NQEFIEALKEIVKEKGISEDLLFTTIEDALVAAYKKNYIGHGISNQNVKVTMNRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +V+ V + +ISL+ A++ D + D+G +V+ + P FGRVA Q+AKQV+IQ+ Sbjct: 62 VYSQKSIVDNVVDDVSEISLEDAKEIDSNYDMGDIVNIEVTPRKFGRVAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y +F +K +II+GTV R + N++V+LG ++ ++ +E I E D+ Sbjct: 122 IKEEERRIIYNDFVEKEDDIITGTVIRKDKNNILVNLGKTEAILGPNEQIPGEKYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G Q+++SRTHP + +LF +EVPE+++G V +K+++R+ GSR K+AV Sbjct: 182 LKLYIVEVKNTTKGAQIVISRTHPGLIKRLFELEVPEVFDGTVDIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++DP+GACVG +G RVQ +V EL+ EKIDI+ WS ++ NAL PA V V L Sbjct: 242 HSNDENVDPMGACVGPKGVRVQNIVNELKSEKIDIIKWSKLPEEYIANALSPAKVLDVTL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 DE++ +++V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +K Sbjct: 302 DEEIKFAQIVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQSDVEDEK 353 >gi|283470481|emb|CAQ49692.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ST398] Length = 391 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 151/386 (39%), Positives = 234/386 (60%), Gaps = 1/386 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393 ++++ E DV V+ Sbjct: 365 LEDVDTTE-STEEVTDVSVETNVEKE 389 >gi|320144367|gb|EFW36133.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MRSA177] Length = 391 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 229/372 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRVEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364 Query: 368 VDEIIAHLLVAE 379 +++ E Sbjct: 365 LEDADTTESTEE 376 >gi|49483429|ref|YP_040653.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MRSA252] gi|82750867|ref|YP_416608.1| transcription elongation factor NusA [Staphylococcus aureus RF122] gi|258423893|ref|ZP_05686778.1| transcription termination factor NusA [Staphylococcus aureus A9635] gi|282903821|ref|ZP_06311709.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C160] gi|282905584|ref|ZP_06313439.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus Btn1260] gi|282908559|ref|ZP_06316389.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910838|ref|ZP_06318641.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WBG10049] gi|282918965|ref|ZP_06326700.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C427] gi|283958009|ref|ZP_06375460.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus A017934/97] gi|295427753|ref|ZP_06820385.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591289|ref|ZP_06949927.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MN8] gi|49241558|emb|CAG40244.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus MRSA252] gi|82656398|emb|CAI80817.1| transcription termination-antitermination factor [Staphylococcus aureus RF122] gi|257845922|gb|EEV69951.1| transcription termination factor NusA [Staphylococcus aureus A9635] gi|282316775|gb|EFB47149.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C427] gi|282325443|gb|EFB55752.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WBG10049] gi|282327621|gb|EFB57904.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330876|gb|EFB60390.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595439|gb|EFC00403.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus C160] gi|283790158|gb|EFC28975.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus A017934/97] gi|295128111|gb|EFG57745.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576175|gb|EFH94891.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MN8] gi|302332872|gb|ADL23065.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus JKD6159] gi|312438354|gb|ADQ77425.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH60] gi|315194154|gb|EFU24547.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS00] gi|323441046|gb|EGA98753.1| transcription elongation factor NusA [Staphylococcus aureus O11] gi|323443915|gb|EGB01526.1| transcription elongation factor NusA [Staphylococcus aureus O46] Length = 391 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 151/386 (39%), Positives = 233/386 (60%), Gaps = 1/386 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393 +++ E DV V+ Sbjct: 365 LEDADTTE-STEEVTDVSVETNVEKE 389 >gi|282916526|ref|ZP_06324284.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus D139] gi|283770330|ref|ZP_06343222.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus H19] gi|282319013|gb|EFB49365.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus D139] gi|283460477|gb|EFC07567.1| N utilization substance protein A [Staphylococcus aureus subsp. aureus H19] Length = 391 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 151/386 (39%), Positives = 233/386 (60%), Gaps = 1/386 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKATEEDVA 364 Query: 368 VDEIIAHLLVAEGFADVEELACVKIS 393 +++ E DV V+ Sbjct: 365 LEDADTTE-STEEVTDVSVETNVEKE 389 >gi|282850815|ref|ZP_06260189.1| transcription termination factor NusA [Lactobacillus gasseri 224-1] gi|282557767|gb|EFB63355.1| transcription termination factor NusA [Lactobacillus gasseri 224-1] Length = 406 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 226/403 (56%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 4 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ + Sbjct: 124 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 184 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDV 305 ID VG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V D+D Sbjct: 244 IDSVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQNVRLA++L G+ IDI E + + + T + Sbjct: 304 KNALVIVPDYQLSLAIGKRGQNVRLAARLAGYKIDIKPESQVEFVDSEGDDVETDQDIDD 363 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 NV A AE + ++ S D + E Sbjct: 364 SNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 406 >gi|253682577|ref|ZP_04863374.1| transcription termination factor NusA [Clostridium botulinum D str. 1873] gi|253562289|gb|EES91741.1| transcription termination factor NusA [Clostridium botulinum D str. 1873] Length = 348 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 144/347 (41%), Positives = 223/347 (64%), Gaps = 5/347 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ + E+ +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKRIEEDP-LTINEISLEEAREINPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D+ Sbjct: 121 IKEAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +V EL++EKIDI+ W D ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVNELKNEKIDIIKWDKDPEKYIANALSPARVVNVEI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DEENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVE 347 >gi|302191441|ref|ZP_07267695.1| transcription elongation factor NusA [Lactobacillus iners AB-1] Length = 362 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 4 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 124 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD + Sbjct: 184 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 244 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 346 >gi|289550942|ref|YP_003471846.1| Transcription termination protein NusA [Staphylococcus lugdunensis HKU09-01] gi|289180474|gb|ADC87719.1| Transcription termination protein NusA [Staphylococcus lugdunensis HKU09-01] Length = 387 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 148/369 (40%), Positives = 224/369 (60%), Gaps = 1/369 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED-SINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + I Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDACEAGIYPIVEAENHADEAEI 364 Query: 367 NVDEIIAHL 375 +D+ Sbjct: 365 EIDDESIET 373 >gi|46578925|ref|YP_009733.1| transcription elongation factor NusA [Desulfovibrio vulgaris str. Hildenborough] gi|120603474|ref|YP_967874.1| transcription elongation factor NusA [Desulfovibrio vulgaris DP4] gi|46448337|gb|AAS94992.1| N utilization substance protein A [Desulfovibrio vulgaris str. Hildenborough] gi|120563703|gb|ABM29447.1| NusA antitermination factor [Desulfovibrio vulgaris DP4] gi|311232783|gb|ADP85637.1| transcription termination factor NusA [Desulfovibrio vulgaris RCH1] Length = 428 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 178/410 (43%), Positives = 269/410 (65%), Gaps = 9/410 (2%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 +EL + D ++ +K ++RD++++ + ++++ + YG D+ V N E+G+I +++ Sbjct: 3 MELKKAIDQISKDKGLERDMLVATLEEAVRTSVVRKYGDDIDVEVSYNDESGEIEVYQFK 62 Query: 67 EVV----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV +E E+ I L+ AR DPS+ I + L D GR+A QSAKQVIIQ++ Sbjct: 63 IVVAELDDEDEDGNAHIVLEEARKHDPSVQIDDEMGFRLKVEDLGRIAAQSAKQVIIQRM 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R+AE++ Y EFKD+ GEIISG ++R + I++LG ++ ++ ++E I RE+ + GDRV Sbjct: 123 RDAEQELIYDEFKDRRGEIISGIIQRRDKAGWIINLGRTEALLPKEEQIPREHYKRGDRV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +VR+E RGPQV++SR+H +M LF EVPE+ +G VQ+ V+RDPGSRAK+AV Sbjct: 183 QAIIIEVRKEGRGPQVIVSRSHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVAVL 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S + +DPVGACVG+RGSR+Q VV ELR E+IDIVVWSP+ AT+ NAL PA+++++V+D Sbjct: 243 SRERDVDPVGACVGIRGSRIQNVVQELRGERIDIVVWSPEIATYARNALSPAVISRIVVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ +EVIVP +QL+ AIGR+GQNV+LA++L GW IDI TE R + N + Sbjct: 303 EEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGRGL 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 Q +V EI V GF +E L E+AS G D+ +++ Sbjct: 358 EQIASVAEISIEQFVTAGFQSIERLREASDEELASGLGIDDNRIADLRAA 407 >gi|330685665|gb|EGG97306.1| transcription termination factor NusA [Staphylococcus epidermidis VCU121] Length = 410 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 150/400 (37%), Positives = 238/400 (59%), Gaps = 3/400 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + E Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVIARKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V + ++ + A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEKVFDDREEVDISTALVKNPAYEIGDIYEEDVTPQDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E+ P +R+K ++ Sbjct: 125 EILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNESYIPNERIKVFVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEI++G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIFDGTVIVKSVAREAGDRSKISVYSENPE 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE+ Sbjct: 245 IDAVGACVGSKGARVEAVVEELGGEKIDIVQWNEDPKVFVRNALSPSQVLEVIVDEENQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ---FFMQ 364 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESDARDAGVYPVIESEEIADEVVN 364 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + + D + + E ELA + + E Sbjct: 365 SGDEDIEFDDVNLEESNLTTAELAAETDESLEETDEVTTE 404 >gi|331269630|ref|YP_004396122.1| NusA antitermination factor [Clostridium botulinum BKT015925] gi|329126180|gb|AEB76125.1| NusA antitermination factor [Clostridium botulinum BKT015925] Length = 348 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 145/347 (41%), Positives = 224/347 (64%), Gaps = 5/347 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I+ ++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIEEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ + E+ +ISL+ AR+ +P ++G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKRIEEDP-LTINEISLEEAREFNPKYEMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E I E D+ Sbjct: 121 IKEAERKVIYNEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQIPSEEYNFNDK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V++K+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYEGVVEIKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W D ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKDPEKYIANALSPARVVSVEI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 DE+ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DEENKSAKIVVEDGQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVE 347 >gi|313680244|ref|YP_004057983.1| nusa antitermination factor [Oceanithermus profundus DSM 14977] gi|313152959|gb|ADR36810.1| NusA antitermination factor [Oceanithermus profundus DSM 14977] Length = 401 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 152/374 (40%), Positives = 224/374 (59%), Gaps = 10/374 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPE 56 E ++ VA E+ + D ++ +++ KA G + V + P Sbjct: 2 NREFVEALQHVALERGVSTDELIEAFEEALAKAYLRHKGFKPKEVEEGLGPLVEVHLEPS 61 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 TG+I + + VVEEVEN I L+ A+ DP + +G + P+ P +F R+AVQ+AKQ Sbjct: 62 TGEIEVLEIRRVVEEVENPDRDIPLEEAKKYDPEVQVGEEMEFPVDPDEFSRIAVQAAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175 ++ Q+++EAER+R Y E+KD+ GEII+G V RV+ GNV VDLG + ++ E I E Sbjct: 122 ILTQRLKEAERNRVYEEYKDREGEIITGQVTRVDNRGNVYVDLGRGEALMPPREQIPGER 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 PG RVK Y+ +VRR +GP +++SR H + + L EVPEI G V++K V+R+PGS Sbjct: 182 YHPGQRVKVYLKEVRRSSKGPSLIVSRAHEELLKYLMRQEVPEIAEGTVEIKVVAREPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV S + ++DP+GAC+G +G R+QAV EL EKID++ WS + F+ NAL PA Sbjct: 242 RSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGREKIDVIPWSSNPREFIRNALSPAT 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V + +D + GR V V K+Q S+AIGR GQNVRLAS+LTG+ ID EE S + Sbjct: 302 VGNIEIDTEAGRAVVSVGKDQHSVAIGRGGQNVRLASKLTGFEIDFKEAEEVSDLDEALL 361 Query: 356 NERTQFFMQAINVD 369 + A++ Sbjct: 362 RASEKTEEVAVDAG 375 >gi|309804404|ref|ZP_07698478.1| transcription termination factor NusA [Lactobacillus iners LactinV 11V1-d] gi|309807206|ref|ZP_07701180.1| transcription termination factor NusA [Lactobacillus iners LactinV 03V1-b] gi|309808384|ref|ZP_07702285.1| transcription termination factor NusA [Lactobacillus iners LactinV 01V1-a] gi|309809697|ref|ZP_07703552.1| transcription termination factor NusA [Lactobacillus iners SPIN 2503V10-D] gi|312871846|ref|ZP_07731931.1| transcription termination factor NusA [Lactobacillus iners LEAF 3008A-a] gi|312872033|ref|ZP_07732111.1| transcription termination factor NusA [Lactobacillus iners LEAF 2062A-h1] gi|312873348|ref|ZP_07733401.1| transcription termination factor NusA [Lactobacillus iners LEAF 2052A-d] gi|312875707|ref|ZP_07735704.1| transcription termination factor NusA [Lactobacillus iners LEAF 2053A-b] gi|325912466|ref|ZP_08174859.1| transcription termination factor NusA [Lactobacillus iners UPII 143-D] gi|325912547|ref|ZP_08174934.1| transcription termination factor NusA [Lactobacillus iners UPII 60-B] gi|329919859|ref|ZP_08276797.1| transcription termination factor NusA [Lactobacillus iners SPIN 1401G] gi|308163519|gb|EFO65792.1| transcription termination factor NusA [Lactobacillus iners LactinV 11V1-d] gi|308166427|gb|EFO68632.1| transcription termination factor NusA [Lactobacillus iners LactinV 03V1-b] gi|308168369|gb|EFO70486.1| transcription termination factor NusA [Lactobacillus iners LactinV 01V1-a] gi|308169977|gb|EFO72015.1| transcription termination factor NusA [Lactobacillus iners SPIN 2503V10-D] gi|311088772|gb|EFQ47219.1| transcription termination factor NusA [Lactobacillus iners LEAF 2053A-b] gi|311091138|gb|EFQ49529.1| transcription termination factor NusA [Lactobacillus iners LEAF 2052A-d] gi|311092446|gb|EFQ50812.1| transcription termination factor NusA [Lactobacillus iners LEAF 2062A-h1] gi|311092627|gb|EFQ50986.1| transcription termination factor NusA [Lactobacillus iners LEAF 3008A-a] gi|325475713|gb|EGC78886.1| transcription termination factor NusA [Lactobacillus iners UPII 143-D] gi|325478156|gb|EGC81281.1| transcription termination factor NusA [Lactobacillus iners UPII 60-B] gi|328936949|gb|EGG33379.1| transcription termination factor NusA [Lactobacillus iners SPIN 1401G] Length = 362 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 4 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 64 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 124 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD + Sbjct: 184 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 244 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 304 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 346 >gi|57651836|ref|YP_186142.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus COL] gi|87160356|ref|YP_493856.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194976|ref|YP_499776.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221388|ref|YP_001332210.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509432|ref|YP_001575091.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142500|ref|ZP_03566993.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452565|ref|ZP_05700571.1| transcription termination-antitermination factor [Staphylococcus aureus A5948] gi|262048158|ref|ZP_06021045.1| transcription elongation factor NusA [Staphylococcus aureus D30] gi|262051328|ref|ZP_06023551.1| transcription elongation factor NusA [Staphylococcus aureus 930918-3] gi|282920510|ref|ZP_06328231.1| transcription termination factor NusA [Staphylococcus aureus A9765] gi|284024259|ref|ZP_06378657.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus 132] gi|294848262|ref|ZP_06789009.1| transcription termination factor NusA [Staphylococcus aureus A9754] gi|304381170|ref|ZP_07363823.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286022|gb|AAW38116.1| N utilization substance protein A, putative [Staphylococcus aureus subsp. aureus COL] gi|87126330|gb|ABD20844.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202534|gb|ABD30344.1| transcription termination-antitermination factor, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374188|dbj|BAF67448.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus str. Newman] gi|160368241|gb|ABX29212.1| N utilization substance A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859783|gb|EEV82625.1| transcription termination-antitermination factor [Staphylococcus aureus A5948] gi|259160703|gb|EEW45724.1| transcription elongation factor NusA [Staphylococcus aureus 930918-3] gi|259163724|gb|EEW48279.1| transcription elongation factor NusA [Staphylococcus aureus D30] gi|269940757|emb|CBI49139.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus TW20] gi|282594172|gb|EFB99159.1| transcription termination factor NusA [Staphylococcus aureus A9765] gi|294825062|gb|EFG41484.1| transcription termination factor NusA [Staphylococcus aureus A9754] gi|302751089|gb|ADL65266.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340153|gb|EFM06094.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198508|gb|EFU28837.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS01] gi|320140917|gb|EFW32764.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus MRSA131] gi|329313936|gb|AEB88349.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus T0131] gi|329727836|gb|EGG64287.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21189] gi|329733550|gb|EGG69878.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21193] Length = 391 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 229/372 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364 Query: 368 VDEIIAHLLVAE 379 +++ E Sbjct: 365 LEDADTTESTEE 376 >gi|315658444|ref|ZP_07911316.1| transcription termination factor NusA [Staphylococcus lugdunensis M23590] gi|315496773|gb|EFU85096.1| transcription termination factor NusA [Staphylococcus lugdunensis M23590] Length = 387 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 149/369 (40%), Positives = 225/369 (60%), Gaps = 1/369 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R+V++ + ++ A + Y + ++RVE+N + G + Sbjct: 5 ELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVVARKS 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV ++ ++ L A ++P+ ++G + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVSDHRDEVDLSTALVKNPAYEVGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILYDEFVDKEDDILTGLIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++V+S + Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYSENPD 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWDEDPKVFVKNALSPSQVLEVIVDESNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF-FMQAI 366 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + E I Sbjct: 305 TVVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIVEAENHADEAEI 364 Query: 367 NVDEIIAHL 375 +D+ Sbjct: 365 EIDDESIET 373 >gi|28210959|ref|NP_781903.1| transcription elongation factor NusA [Clostridium tetani E88] gi|28203398|gb|AAO35840.1| N utilization substance protein A [Clostridium tetani E88] Length = 361 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 146/340 (42%), Positives = 220/340 (64%), Gaps = 4/340 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I +++ + + D++ A + Y T + V +N ETG+I Sbjct: 2 NEEFIVALKEIVKEKGISAELLFNTIEDALVAAYKKNYSKQGATSQHVNVSMNRETGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEVE+ +I ++ A+ DP ++ +V + P FGRVA Q+AKQV++Q+ Sbjct: 62 VYSRKNVVEEVEDEFNEIFVEDAKTIDPRYELEDIVDIEVTPEKFGRVAAQAAKQVVVQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y EF +K +II+G V R + NV ++LG + V+ +E + E D+ Sbjct: 122 IKEEERRIVYNEFIEKECDIITGNVIRKDKTNVFINLGKIEAVLGPNEQMPGEEYNFNDK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV++SRTHP + +LF +EVPEIYNGIV++K++SR+ GSR K+AV Sbjct: 182 LKLYIVEVKNTTKGAQVVVSRTHPGLVKRLFELEVPEIYNGIVEIKSISREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+D ++D +GACVG +G+RVQ +V EL++EKIDI+ WS F+ NAL PA V KV + Sbjct: 242 HSNDENVDSMGACVGPKGTRVQNIVNELKNEKIDIIKWSKLPDEFISNALSPARVLKVDV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 302 DEESKSAKVLVEDNQLSLAIGKEGQNVRLAAKLTGWKIDI 341 >gi|157363142|ref|YP_001469909.1| transcription elongation factor NusA [Thermotoga lettingae TMO] gi|157313746|gb|ABV32845.1| NusA antitermination factor [Thermotoga lettingae TMO] Length = 344 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 139/339 (41%), Positives = 219/339 (64%), Gaps = 1/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L LL D + EK I +D ++ ++ ++ A + +GT ++ V+I+ TGDI LF++ Sbjct: 2 NLGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VVEEVE+ Q+S++ AR DP + G + + +FGR+A Q+AKQV+IQ++RE Sbjct: 62 FDVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIREL 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++RQY + G +I+ V RV + +G + + + E IS E++ G+ +K Y Sbjct: 122 EKERQYEHYSTLAGSVITVEVIRVTSDWADIRVGKIETRLPKREWISGESISAGELIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V ++++GP++++SR P+F+ L +E+PEI N IVQ+KA+ R+PG R K+AV S++ Sbjct: 182 VQSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVSTN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGAC+G GSR+ A++ EL+ EK+DI W+ D ++NAL PA VT V + D + Sbjct: 242 PQVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILDFE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 RKAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|259501585|ref|ZP_05744487.1| N utilization substance protein A [Lactobacillus iners DSM 13335] gi|259167103|gb|EEW51598.1| N utilization substance protein A [Lactobacillus iners DSM 13335] Length = 374 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 16 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 76 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 136 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD + Sbjct: 196 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPN 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 256 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 315 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 358 >gi|297623578|ref|YP_003705012.1| transcription termination factor NusA [Truepera radiovictrix DSM 17093] gi|297164758|gb|ADI14469.1| transcription termination factor NusA [Truepera radiovictrix DSM 17093] Length = 397 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 234/400 (58%), Gaps = 6/400 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + + +A+E+++D++ +L+ +++++A I V ++PE+G+I + + Sbjct: 2 NKDFIDALNQLAHERNLDKEQLLASFEEALEQAYERNVEPGKQIEVHVDPESGEIDVLVV 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ ++SL+ AR+ DP++++G + P+ P F R+AVQ+ KQVI QK+REA Sbjct: 62 KRVVETVEDPGLEMSLEEARELDPTVEVGMEMELPVDPERFTRIAVQTTKQVITQKIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER + E+KD+ G++I+ V R + NV VDLG + ++ E I E G R+K Sbjct: 122 ERALVFNEYKDRAGDVITAVVSRTDNKRNVFVDLGRGEAIMPPKEQIPGERYMVGMRLKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V RGP +L+SR P+ + L E+PEI + V++KAV+R+ G R+K+AV S Sbjct: 182 FVMKVELGNRGPSILVSRAAPELLEYLMRQEIPEIADDTVEIKAVAREAGQRSKVAVVSR 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + ++DP+GAC+G RG+R+QAV EL+ E++DI++W P F+ NAL PA V + ++ + Sbjct: 242 NPNVDPIGACIGHRGARIQAVTGELQRERVDIILWDPSPREFIRNALSPAKVGTIEVNSE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 G +V V +QLSLAIG+ GQNVRLA++LTG+ ID++ E S ++ Sbjct: 302 TGEAKVTVSNDQLSLAIGKGGQNVRLAAKLTGFKIDLVASEHISDLDAALQAAASRVHDA 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 I D+ F + A E + E +E Sbjct: 362 PIATDDAK-----RAAFDALFSAAPSAAEEGDAAERVGDE 396 >gi|291562551|emb|CBL41367.1| transcription termination factor NusA [butyrate-producing bacterium SS3/4] Length = 388 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 147/352 (41%), Positives = 222/352 (63%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ + + E +I +D +L + +S+ A ++ +G +++V I+P+ D S++ Sbjct: 2 NKELMESMNILEKEYNISKDTLLEAIENSLLTACKNHFGKADNVKVIIDPDGCDYSVYME 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE VE+ QISL AR P +G +V P+ DFGR+A Q+AK VI+QK+RE Sbjct: 62 KEVVETVEDPITQISLADARMIAPRHVLGDIVQIPIDSHDFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 R Q E++ K E+++G V+R NV VDLG D ++ E + E + +R+K Y Sbjct: 122 SRKSQLSEWQCKEKEVVTGIVQRYIGRNVSVDLGKIDAILPEAEQVKGEVFQRTERIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ +GP++ +SRTHP + +LF E+ E+ +G V+++A++R+ GSR K+AV S+D Sbjct: 182 ILEVKDSPKGPRISVSRTHPDLVRRLFEAEIAEVRDGTVEIRAIAREAGSRTKIAVSSTD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG+ G+RV A+V ELR EKIDI+ W + A + NAL PA V VV DED Sbjct: 242 PNVDPVGACVGLNGARVNAIVNELRGEKIDIINWDDNPAFLIENALSPAKVISVVADEDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VIVP QLSLAIG+ GQN RLA++LT + IDI +E + D + Sbjct: 302 KEAQVIVPDYQLSLAIGKEGQNARLAARLTTYKIDIKSETQARELGLFDDMD 353 >gi|15924256|ref|NP_371790.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu50] gi|15926849|ref|NP_374382.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus N315] gi|148267756|ref|YP_001246699.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus JH9] gi|150393815|ref|YP_001316490.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus JH1] gi|156979587|ref|YP_001441846.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu3] gi|253315622|ref|ZP_04838835.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733496|ref|ZP_04867661.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus TCH130] gi|255006053|ref|ZP_05144654.2| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795678|ref|ZP_05644657.1| transcription termination factor NusA [Staphylococcus aureus A9781] gi|258416081|ref|ZP_05682349.1| transcription termination-antitermination factor [Staphylococcus aureus A9763] gi|258421664|ref|ZP_05684588.1| transcription termination factor NusA [Staphylococcus aureus A9719] gi|258444604|ref|ZP_05692933.1| transcription termination-antitermination factor [Staphylococcus aureus A8115] gi|258447563|ref|ZP_05695707.1| transcription termination-antitermination factor [Staphylococcus aureus A6300] gi|258449405|ref|ZP_05697508.1| transcription termination-antitermination factor [Staphylococcus aureus A6224] gi|258454784|ref|ZP_05702748.1| transcription termination-antitermination factor [Staphylococcus aureus A5937] gi|269202883|ref|YP_003282152.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ED98] gi|282892754|ref|ZP_06300989.1| transcription termination factor NusA [Staphylococcus aureus A8117] gi|282927608|ref|ZP_06335224.1| transcription termination factor NusA [Staphylococcus aureus A10102] gi|295406203|ref|ZP_06816010.1| transcription termination factor NusA [Staphylococcus aureus A8819] gi|296274824|ref|ZP_06857331.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MR1] gi|297244431|ref|ZP_06928314.1| transcription termination factor NusA [Staphylococcus aureus A8796] gi|13701066|dbj|BAB42361.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus N315] gi|14247036|dbj|BAB57428.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus Mu50] gi|147740825|gb|ABQ49123.1| NusA antitermination factor [Staphylococcus aureus subsp. aureus JH9] gi|149946267|gb|ABR52203.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus JH1] gi|156721722|dbj|BAF78139.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus Mu3] gi|253728550|gb|EES97279.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus TCH130] gi|257789650|gb|EEV27990.1| transcription termination factor NusA [Staphylococcus aureus A9781] gi|257839229|gb|EEV63705.1| transcription termination-antitermination factor [Staphylococcus aureus A9763] gi|257842350|gb|EEV66775.1| transcription termination factor NusA [Staphylococcus aureus A9719] gi|257850097|gb|EEV74050.1| transcription termination-antitermination factor [Staphylococcus aureus A8115] gi|257853754|gb|EEV76713.1| transcription termination-antitermination factor [Staphylococcus aureus A6300] gi|257857393|gb|EEV80291.1| transcription termination-antitermination factor [Staphylococcus aureus A6224] gi|257863167|gb|EEV85931.1| transcription termination-antitermination factor [Staphylococcus aureus A5937] gi|262075173|gb|ACY11146.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ED98] gi|282590611|gb|EFB95688.1| transcription termination factor NusA [Staphylococcus aureus A10102] gi|282764751|gb|EFC04876.1| transcription termination factor NusA [Staphylococcus aureus A8117] gi|285816948|gb|ADC37435.1| Transcription termination protein NusA [Staphylococcus aureus 04-02981] gi|294968791|gb|EFG44813.1| transcription termination factor NusA [Staphylococcus aureus A8819] gi|297178461|gb|EFH37707.1| transcription termination factor NusA [Staphylococcus aureus A8796] gi|312829660|emb|CBX34502.1| transcription elongation protein nusA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131060|gb|EFT87044.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus CGS03] gi|329727637|gb|EGG64093.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus 21172] Length = 391 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 149/372 (40%), Positives = 229/372 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + I Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDIA 364 Query: 368 VDEIIAHLLVAE 379 +++ E Sbjct: 365 LEDADTTESTEE 376 >gi|21282878|ref|NP_645966.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MW2] gi|49486105|ref|YP_043326.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus MSSA476] gi|253731885|ref|ZP_04866050.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208088|ref|ZP_06924519.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912169|ref|ZP_07129612.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH70] gi|21204317|dbj|BAB95014.1| transcription termination-antitermination factor [Staphylococcus aureus subsp. aureus MW2] gi|49244548|emb|CAG42977.1| putative N utilization substance protein A [Staphylococcus aureus subsp. aureus MSSA476] gi|253724295|gb|EES93024.1| transcription elongation factor NusA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296887331|gb|EFH26233.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886415|gb|EFK81617.1| transcription termination factor NusA [Staphylococcus aureus subsp. aureus TCH70] Length = 391 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 229/372 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + + Sbjct: 305 TIVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDVA 364 Query: 368 VDEIIAHLLVAE 379 +++ E Sbjct: 365 LEDADTTESTEE 376 >gi|315653432|ref|ZP_07906354.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] gi|315489357|gb|EFU78997.1| transcription elongation factor NusA [Lactobacillus iners ATCC 55195] Length = 374 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 132/343 (38%), Positives = 208/343 (60%), Gaps = 2/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+ +K I ++ ++ + ++ A + Y ++ V + G + + Sbjct: 16 ELIKSFTALEEQKGIKQEEIVDAIKAALIAAYKKNYNQAQNVEVIFDENKGKFIVQAVKT 75 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ Q+SLK A + + + ++G + + P +FGR+A Q+AKQVI+Q++REAER Sbjct: 76 VVDEVQDDRQQVSLKDALEINRAYEVGDEIRFEVTPQNFGRLAAQTAKQVIMQRLREAER 135 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P DR+K + Sbjct: 136 AHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKPQDRIKVLVT 195 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K+AV SSD Sbjct: 196 KVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTKIAVKSSDPD 255 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V V E D Sbjct: 256 IDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIAVQFGEANDD 315 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 316 KSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 358 >gi|303248242|ref|ZP_07334505.1| transcription termination factor NusA [Desulfovibrio fructosovorans JJ] gi|302490380|gb|EFL50291.1| transcription termination factor NusA [Desulfovibrio fructosovorans JJ] Length = 478 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 174/432 (40%), Positives = 270/432 (62%), Gaps = 7/432 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++ Sbjct: 1 MTELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ + +I L AR DP++ + + L + GR+A QSAKQVIIQ++R Sbjct: 61 KVVVEDDDVADPAAEICLSDARAIDPNVALDDEMGFKLTVENLGRIAAQSAKQVIIQRMR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+ Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRTGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S Sbjct: 181 AYIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVVS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL P+ VT++ +DE Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPSRVTRISVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE R ++ N +F Sbjct: 301 DEKALEVVVSDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTES-----RFREVNASKKFLE 355 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V EI ++A GF +E+LA I +I G +++ + + Sbjct: 356 QLASVAEIPVDNILAAGFESMEQLAEAPDEAIDAISGMTPSKRDDLRAALKLMGAVAARS 415 Query: 424 LQKKIRELGVSE 435 + E V+E Sbjct: 416 EEADAEEDAVAE 427 >gi|329767072|ref|ZP_08258600.1| transcription termination factor NusA [Gemella haemolysans M341] gi|328837797|gb|EGF87422.1| transcription termination factor NusA [Gemella haemolysans M341] Length = 343 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 143/336 (42%), Positives = 210/336 (62%), Gaps = 2/336 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + SL+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFSLEDALQINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ + GEI+SGTV R++ V V LG + ++ +E + E P +K YI Sbjct: 124 EILYKEYIEHEGEILSGTVDRIDSRYVYVKLGKIEAILGENERVKGETYIPQTPIKVYIA 183 Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V R P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ D Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYAED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE+ Sbjct: 244 KNIDPVGACVGNKGDRVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEITIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +QLSLAIG++GQNVRLA++LTGW IDI Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339 >gi|206890467|ref|YP_002248539.1| transcription termination factor NusA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742405|gb|ACI21462.1| transcription termination factor NusA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 365 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 163/353 (46%), Positives = 244/353 (69%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + + + EK I +D V+ ++ ++ A R YG S I+++I P+T DI++F + + Sbjct: 4 ELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFEIKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV++ +IS++ + + IG V PL DFGR+AVQ+AK V+ QK+RE ER Sbjct: 64 VVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIREIER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EFKDKVG I+SGTV R E GN + +G ++ ++ E + ++NL+ GD VK+YI+ Sbjct: 124 SQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGKAEAILPDKEVLPQDNLKRGDIVKAYIF 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ + P + LSRTHP F+V LF +EVPEI +GIV++K ++RDPG R K+A S D S Sbjct: 184 EVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASSKDPS 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVGM+G+RVQAVV EL+ E+IDI+ +S D + F+ AL PA V KV ++E+ Sbjct: 244 VDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINENEKT 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 V+V +QLSLAIG++GQNVRLAS+LTGW+ID+++E E + + K+ + Sbjct: 304 AVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFK 356 >gi|254796878|ref|YP_003081715.1| N utilization substance protein A [Neorickettsia risticii str. Illinois] gi|254590114|gb|ACT69476.1| N utilization substance protein A [Neorickettsia risticii str. Illinois] Length = 537 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 183/542 (33%), Positives = 304/542 (56%), Gaps = 51/542 (9%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQK-AARSLYGTMSDIRVEINPETGDISLFR 64 L++++ ++VA ++ ++ D + + + + YG I VEI+ ++G+I + + Sbjct: 10 NLQIVESINSVAEKEGLNPDALFRAIGIELAHEIGKRQYG-DHRIFVEIDKKSGEIIVSK 68 Query: 65 LLEVVEE---------VENYTCQ-------------------ISLKVARDRDPSID--IG 94 L VVE+ +E T + I L A+ + P+++ G Sbjct: 69 RLLVVEDSDKARMLEQLEVTTEEFPDSPSSFGVQEKIHHDDIIDLSTAKLKYPNVEHKAG 128 Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-----KRV 149 ++++ LP G + + K + + + R++QY +K +VGEI++G V + Sbjct: 129 DIITERLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVKKSIDFKA 188 Query: 150 EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMV 209 ++IVD+ +G++ + E+ RPG+RVK I V PQ+LLSR+ F+ Sbjct: 189 GSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVIKPQILLSRSSGSFVA 248 Query: 210 KLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL 269 +LF +VPEIY+ +V++K V+RD GSR+K+AVFSSD +IDPVGAC+GM GSR+ AVV+EL Sbjct: 249 QLFSQQVPEIYDRVVEIKKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRINAVVSEL 308 Query: 270 RDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVR 329 EKID+V +S D+ATF+ NAL+P K+ ++E+V +IE++VP E +SL IGR GQNV Sbjct: 309 HGEKIDVVEYSSDTATFLANALKPIRPVKIAVNEEVKKIELVVPDESVSLVIGRGGQNVY 368 Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389 L S L G+ ++++++ E S + ++F T F++A+NV+E+IA LLV EGF+ VEE+A Sbjct: 369 LLSSLLGYRVEVLSDAEVSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFSTVEEIAD 428 Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449 S +A IEGFDE+ A EI+ RA EY+ Q + + + + ++ D+ + Sbjct: 429 CNTSRLAFIEGFDEDVAEEIRSRAVEYVNEQPKRTQALVEKYKANPNMLALSSFDTGLLE 488 Query: 450 ALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKM 509 L +G+ +E +A S D+L + G + E +II +R + Sbjct: 489 VLFSSGLTDLEKVAELSCDELREVIGDNGFAVPLL--------------EQLIIRSRETL 534 Query: 510 GW 511 GW Sbjct: 535 GW 536 >gi|313906214|ref|ZP_07839560.1| transcription termination factor NusA [Eubacterium cellulosolvens 6] gi|313468944|gb|EFR64300.1| transcription termination factor NusA [Eubacterium cellulosolvens 6] Length = 415 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 140/345 (40%), Positives = 213/345 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL + + EK+I ++ +L + S+ +A ++ Y ++ V I+P+T D ++ Sbjct: 2 NSELLDALNILEKEKNISKETLLEAIQQSLLQAYKNQYDRSDNVVVSIDPDTCDFHIYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE VE+ +I+ A D + IG V + +FGR+A +AK VI+QK+RE Sbjct: 62 KTVVETVEDPVTEIAQIDAFKYDSTAQIGETVRVEIQSKNFGRIATTNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + E+++K E+++GTV+R NV V+LG D ++ E + E R +RVK Y Sbjct: 122 ERRALFNEYREKEHEVMTGTVQRYVGQNVNVNLGKVDALLTAKEMVKGEKFRLTERVKIY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR +GP++L+SRTHP+ + +LF EV EI GI+++K+++R+ GSR K+AV+S+D Sbjct: 182 VLEVRDTPKGPKILVSRTHPELVKRLFEEEVAEIREGIIEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ GSRV A+V EL EKID++ W + A + +AL PA V V+ D D Sbjct: 242 PDVDAVGACVGVNGSRVNAIVDELDGEKIDVIEWDENEAVLIEHALSPAKVISVLADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA+ LT + IDI +E + Sbjct: 302 KTALVIVPDYQLSLAIGKEGQNARLAAHLTQYKIDIKSESQAKEE 346 >gi|258434820|ref|ZP_05688894.1| transcription termination-antitermination factor [Staphylococcus aureus A9299] gi|257849181|gb|EEV73163.1| transcription termination-antitermination factor [Staphylococcus aureus A9299] Length = 391 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 149/372 (40%), Positives = 229/372 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + + EK I R V++ + ++ A + Y + ++RVE+N + G + + Sbjct: 5 ELLLATEYLEKEKKIPRAVLIDAIEAALITAYKKNYDSARNVRVELNMDQGTFKVIARKD 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AKQ ++Q++R+AER Sbjct: 65 VVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPNDFGRVGAQAAKQAVMQRLRDAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + EF DK +I++G + RV++ V V+LG + V+ E E P +R+K Y+ Sbjct: 125 EILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVN 184 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G R+K++VFS ++ Sbjct: 185 KVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVFSENND 244 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ V +V++DE Sbjct: 245 IDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQVLEVIVDETNQS 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + E + + I Sbjct: 305 TVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPVVEAEKVTEEDIA 364 Query: 368 VDEIIAHLLVAE 379 +++ E Sbjct: 365 LEDADTTESTEE 376 >gi|320159637|ref|YP_004172861.1| transcription elongation protein NusA [Anaerolinea thermophila UNI-1] gi|319993490|dbj|BAJ62261.1| transcription elongation protein NusA [Anaerolinea thermophila UNI-1] Length = 633 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 167/465 (35%), Positives = 257/465 (55%), Gaps = 12/465 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT--MSDIRVEINPETGDISLF 63 + E + + V EK + RDV+L + ++ A R + +++ +TG ++++ Sbjct: 2 KNEFVLAFNEVLEEKQLPRDVILKALESAMVSAYRRAVNASNAQQVEAKVDLDTGKVTIY 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVVE+V ++SL+ AR +P + +G ++ P DFGRVA Q+A+QVI Q++R Sbjct: 62 AEKEVVEQVREPLTEVSLEEARRYNPHVQLGDMIVVESTPRDFGRVAAQTARQVIQQRIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +AER Q + +VGEI+SG V+ V + + L ++G + R E I E R DRV Sbjct: 122 DAERQMQLNHYAKQVGEIVSGVVQAVNAQGLTIGLEMRAEGTMPRKEMIPGERFRVHDRV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I +V+ RGPQ++LSRTH F+ +L EVPEIY+GIV++++++R+PG RAK+AV Sbjct: 182 RALIAEVKDSPRGPQIILSRTHRNFLRRLLETEVPEIYHGIVEIRSIAREPGERAKVAVS 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ IDPVGACVG+RG R+QA+V EL DEKID++ W+ D A ++ AL PA VT V LD Sbjct: 242 ATQPGIDPVGACVGIRGVRIQAIVRELHDEKIDVIEWNADPAVYIAKALSPARVTGVYLD 301 Query: 303 ED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + V+VP++QLSLAIGR GQN RLA++LTGW IDI + E + Sbjct: 302 DKSSVNKTATVVVPEDQLSLAIGRDGQNARLAAKLTGWRIDIKSLPEAAAEALHRLQTDP 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ I E A V+ A E + E + F + RA E + Sbjct: 362 EY--AQIAELEREAAEAVSGLLARKAEGRPLSAEEYDRMAQFVDRVQRRATRRAME-KKA 418 Query: 420 IDITLQKKIRELGVSEELCS---IPGIDSKIKVALGENGIKTMED 461 + + +R +E + G+ + L E G T+ D Sbjct: 419 EEDNRVQSVRASIPAEAFQTGILDSGLPEHVAYLLQEGGFSTVGD 463 >gi|150016083|ref|YP_001308337.1| transcription elongation factor NusA [Clostridium beijerinckii NCIMB 8052] gi|149902548|gb|ABR33381.1| NusA antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 149/398 (37%), Positives = 243/398 (61%), Gaps = 8/398 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y +++V I+ ETG+I Sbjct: 2 NEEFVGALKELVKEKGICEDLLFTTIQDAMVAAYKKNYANANTNAQNVKVNIDRETGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A++ +P ++ ++S + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKTVVDEVYDDVTEISLEEAKELNPKSEVDDIISLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y E+K+K +II+GT+ R + G V V+LG +G+I +E I E + ++ Sbjct: 122 IKEAERTIIYDEYKEKEFDIITGTILRKDKGIVFVNLGKLEGIIGPNEQIPNEEYKFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQ+ +SRTHP + +LF +EVPEI+ G+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNGNKGPQIHVSRTHPGLVKRLFELEVPEIFEGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +DP+GACVG +G RVQ++V EL++EKIDI+ WS + F+ N+L PA V V + Sbjct: 242 YSNDEEVDPMGACVGPKGVRVQSIVNELKNEKIDIIKWSKNPEEFIANSLSPAKVLSVAV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + ++D Sbjct: 302 DENNKSAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQKEAQDEEDERI---- 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 + ++ L D E+ E + E Sbjct: 358 LNTEVEIENEQTTDLNELEIFDDIEVDDSIDEETSMEE 395 >gi|332653588|ref|ZP_08419333.1| transcription termination factor NusA [Ruminococcaceae bacterium D16] gi|332518734|gb|EGJ48337.1| transcription termination factor NusA [Ruminococcaceae bacterium D16] Length = 392 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 142/350 (40%), Positives = 213/350 (60%), Gaps = 7/350 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 + E + EK I ++ + ++ A R + G ++ V+ NPET + +F Sbjct: 15 DGQEFFAAIAQIEQEKGIKPGYMMEKITQALVSAYRRDHEGVGDNLIVDANPETNTVRMF 74 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V+N +ISL+ A+ P ++G VV + P FGR+A Q+A+QVIIQ +R Sbjct: 75 LKKDVVEVVDNPNTEISLQEAKAALPRAELGDVVRIEVKPKSFGRIAAQTARQVIIQGIR 134 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLR 177 EAE+ Y EF K E+++G V R++ N V L +D + +E + E+ Sbjct: 135 EAEQGMVYDEFSSKEHELLTGVVTRIDPRNGAVTLRISSGSEFTDAYLGANEQVKGESYV 194 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G R+K Y+ +VR+ +GPQV++SRTHP + +LF +EVPEIY+G V++++++R+ GSR Sbjct: 195 EGQRLKVYMVEVRKATKGPQVIISRTHPGLVKRLFELEVPEIYDGTVEIRSIAREAGSRT 254 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A ++ AL PA V Sbjct: 255 KLAVWSADPNVDPIGACVGPRGQRVNTIVEELKGEKMDIIKYSDDPAEYIAAALSPADVV 314 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V D V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 315 SVEPLPDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGWKIDIKPASAP 364 >gi|283850804|ref|ZP_06368090.1| NusA antitermination factor [Desulfovibrio sp. FW1012B] gi|283573727|gb|EFC21701.1| NusA antitermination factor [Desulfovibrio sp. FW1012B] Length = 496 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 172/411 (41%), Positives = 264/411 (64%), Gaps = 7/411 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++ Sbjct: 1 MTELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ + +I L AR DP++ + + L D GR+A QSAKQVIIQ++R Sbjct: 61 KVVVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+ Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI +V RGPQ+++SRTH +M LF EVPE+ +G V++ V+RDPGSRAK+AV S Sbjct: 181 AYIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVIS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ AT+ NAL PA VT++ +DE Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI TE R ++ N +F Sbjct: 301 DDKALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTES-----RFREVNASKKFLE 355 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 Q +V EI +++ GF +E+LA I +I G +++ + Sbjct: 356 QLASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGMTPSKRNDLRAALK 406 >gi|168187910|ref|ZP_02622545.1| transcription termination factor NusA [Clostridium botulinum C str. Eklund] gi|169294236|gb|EDS76369.1| transcription termination factor NusA [Clostridium botulinum C str. Eklund] Length = 348 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 223/348 (64%), Gaps = 5/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I +++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIGEELLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ ++ EE + +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKI-EEEPSGVNEISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E + Sbjct: 121 IKEAERKVIYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGIVEIKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D++ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DDENKSAKIVVEDNQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEE 348 >gi|225874866|ref|YP_002756325.1| transcription termination factor NusA [Acidobacterium capsulatum ATCC 51196] gi|225794228|gb|ACO34318.1| transcription termination factor NusA [Acidobacterium capsulatum ATCC 51196] Length = 548 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 174/418 (41%), Positives = 249/418 (59%), Gaps = 9/418 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q +A++ +K ID +VV+ + D+I A R Y T ++R E++ ETG+I + V Sbjct: 5 LYQSIEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYIYKAV 64 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE +E+ QI+L+ AR P +++GG + P GR+A Q AKQVI QKVREA Sbjct: 65 VETPELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ +VGE+++ TVKRVE +VI DLG ++ + + E E G+RV+ Sbjct: 125 ERDTVFNEYAHRVGEVLTATVKRVEMQDVIFDLGKAEARMPKREQSRLEQFSVGERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIAVMSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVSIADLS 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ Q Sbjct: 305 EKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMGGFAQGGTA 364 Query: 365 AI-----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + E I LVA G VE LA + ++ I G E+T +I R Y Sbjct: 365 TAIEEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVRHYF 422 >gi|300361902|ref|ZP_07058079.1| transcription termination factor NusA [Lactobacillus gasseri JV-V03] gi|300354521|gb|EFJ70392.1| transcription termination factor NusA [Lactobacillus gasseri JV-V03] Length = 416 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 136/403 (33%), Positives = 225/403 (55%), Gaps = 2/403 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK I +++++ + ++ A + Y ++ V + + G+ + + Sbjct: 14 EMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNAIKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + + ++G + + P DFGR+A Q+AKQVI+Q++REAER Sbjct: 74 VVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ EI++GTV+R + V V +GN + V+ ++ + EN P D+V+ + Sbjct: 134 EHIISEYSQYKDEIVTGTVERRDNRFVYVKIGNVEAVMPHNDQLPGENYNPQDKVRVLVT 193 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + +LF EVPE+Y+G V++ +++R+ G R K+AV S+D Sbjct: 194 RVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKSNDPD 253 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVG 306 IDPVG VG +G+RVQ +V EL E ID+V + + + F+ NAL PA V V +D Sbjct: 254 IDPVGTLVGPKGARVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSGDDDK 313 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 VIVP QLSLAIG+RGQNVRLA++LTG+ IDI E + + + T + Sbjct: 314 NALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQDIDDS 373 Query: 367 NV-DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 N AE + ++ S D + E Sbjct: 374 NESSNEETTESTAEQLEEDSSDDFPNEEDVDSALDDDADKDEE 416 >gi|317495160|ref|ZP_07953530.1| transcription termination factor NusA [Gemella moribillum M424] gi|316914582|gb|EFV36058.1| transcription termination factor NusA [Gemella moribillum M424] Length = 343 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 144/336 (42%), Positives = 213/336 (63%), Gaps = 2/336 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNAAKNVRVDFNRATGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPDDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+ + GEI+SGTV R++ V V LG + ++ +E + EN P +K YI Sbjct: 124 EILFKEYSEYEGEILSGTVDRIDTRYVYVKLGKIEAILGENERVPGENYVPQIPIKVYIA 183 Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V R P VL SR+HP+F+ +LF MEVPEIY+G V++K+VSR+ G R KLAVFS D Sbjct: 184 KVDNPSRGSKPHVLASRSHPEFIRRLFEMEVPEIYSGTVEIKSVSREAGERTKLAVFSED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++DPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++++DE+ Sbjct: 244 KNVDPVGACVGNKGDRVNRIVDELNGEKIDIITWDADPVKFITNALAPAKVEEIIIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V ++QLSLAIG++GQNVRLA++LTGW IDI Sbjct: 304 KIANVKVKEDQLSLAIGKKGQNVRLAARLTGWKIDI 339 >gi|312143666|ref|YP_003995112.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus'] gi|311904317|gb|ADQ14758.1| NusA antitermination factor [Halanaerobium sp. 'sapolanicus'] Length = 402 Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 156/388 (40%), Positives = 241/388 (62%), Gaps = 1/388 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +Q D + +K I ++V++ + ++ A + +G+ ++R++I+ + G++ ++ Sbjct: 2 NVEFIQALDDIEKDKGISKEVLIDAIETALVSAYKKDFGSKDNVRIDISTDAGEVKVYSR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVEEVEN QISLK A D IG +V + P +FGR+A Q+AKQV++Q++REA Sbjct: 62 KEVVEEVENENTQISLKEADKIDGKYKIGDIVEIEVTPGNFGRIAAQTAKQVVMQRIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + +FK+K E+I+GT++R N+++D+G ++ ++ E I+ E G R+K Y Sbjct: 122 ERDVIFDQFKEKEDELITGTIQRFHNDNILIDMGKTEALLPPSEQIAGEKYEIGKRIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V +GP++L+SRTHP + +LF +EVPEI+ G+V++KAV+R+ G R+K+AV S D Sbjct: 182 VVEVSSTSKGPRILVSRTHPGLLKRLFEIEVPEIFQGLVEIKAVAREAGQRSKMAVASKD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G RVQAVV +L EKIDIV W FV NAL PA V V +++ Sbjct: 242 KQVDPVGACVGPKGMRVQAVVEQLNREKIDIVKWDESPEVFVANALNPAEVIDVKINKSD 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 EV+VP QLSLAIG+ GQN RLA++LTGW +DI E E + K Sbjct: 302 KIAEVVVPDFQLSLAIGKEGQNARLAAKLTGWKVDIKKESEIVKSPAKTKEIEKSAQELE 361 Query: 366 INVDE-IIAHLLVAEGFADVEELACVKI 392 ++DE + + E +E V+ Sbjct: 362 KSLDEFEESSEMENEDLESKQEELEVQA 389 >gi|309791818|ref|ZP_07686305.1| NusA antitermination factor [Oscillochloris trichoides DG6] gi|308226140|gb|EFO79881.1| NusA antitermination factor [Oscillochloris trichoides DG6] Length = 442 Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 148/377 (39%), Positives = 234/377 (62%), Gaps = 3/377 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I ++ ++ VM ++ A + G ++ V+++P+TG + Sbjct: 2 KSDFYTAISQIAAERGIPKEAIIDVMEKALITAYKRTLGNNPPPMEVSVKLDPQTGAARV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + ++ L VAR P++ IG V P DFGR+A Q+AKQV++Q + Sbjct: 62 YAEKQVVDEVYDERFEVELAVARKVQPNVQIGETVVIESTPNDFGRIAAQTAKQVVLQGI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ER+ Y E+ D+ GE+I+ TV+R+ GNVI+++G ++ ++ E + + G R+ Sbjct: 122 KEVEREHIYGEYMDREGELITATVQRLAKGNVILEMGKAEAILPPKEQVESDRYYHGQRL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ ++R+E RGP+++ SRTH +V+LF MEVPEI+NG V++K+++R+PG R K+AV Sbjct: 182 KVYLMEIRKEDRGPRLIASRTHKNLIVRLFEMEVPEIFNGTVEIKSIAREPGLRTKVAVA 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + IDPVG+CVGMRG R+Q +V EL EKID+V WSPD + NAL PA V +V L+ Sbjct: 242 ARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWSPDPKDLIANALSPAQVVEVHLN 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED VIVP +QLSLAIG+ GQNVRLA++L+GW IDI + + R Sbjct: 302 EDDHVALVIVPDKQLSLAIGKEGQNVRLAAKLSGWRIDIKSATALLEEERAAAEVRGYAE 361 Query: 363 MQAINVDEIIAHLLVAE 379 +A+ + + + V Sbjct: 362 AEAMATEVELTNAKVES 378 >gi|297621094|ref|YP_003709231.1| Transcription elongation protein nusA [Waddlia chondrophila WSU 86-1044] gi|297376395|gb|ADI38225.1| Transcription elongation protein nusA [Waddlia chondrophila WSU 86-1044] Length = 424 Score = 326 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 147/420 (35%), Positives = 240/420 (57%), Gaps = 10/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I + + EK I R++V+ + +S+Q AAR S++ V+I+P+TG+I++F Sbjct: 2 NKDLVAIFEYLEKEKGIQREIVIHAIEESLQAAARKSVSGASNVTVQIDPKTGNINVFSE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V+EVE +I L+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R A Sbjct: 62 KEIVDEVEVPAQEILLEEAREIDPDCEIGQFIDILATPKDFGRIAAQKARQIISQKLRSA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V E++SGTVKR + N++VDLG + ++ + E + GDRV + Sbjct: 122 ERDVIYEEYRHRVNEVVSGTVKRFVKGANLVVDLGKVEALMPMRQYPKTEKYKIGDRVLA 181 Query: 185 YIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V + G +V+LSR+ P+F+ +L EVPEI GIV + + R+ G R KL V + Sbjct: 182 LLMEVNDTDSGGAEVILSRSSPEFVRQLMIQEVPEIVEGIVVIDKIEREAGYRTKLTVRA 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +DPVGACVGMRG+RV+ VV EL EKIDI+ +S D + NAL P + K+ + E Sbjct: 242 TDQKVDPVGACVGMRGNRVKNVVRELNSEKIDIIPYSDDPIELLQNALSPIEIRKISISE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +++ + + IG++G N RL S+L G+ +++ + + E + Sbjct: 302 DDRVISIVIDDDDYAAVIGKKGMNARLNSRLIGYELEVQRMTDYNKTMAIQRTELAESDD 361 Query: 364 QAINV--------DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 ++ ++++ LVAEGF L ++++ E A I + R+ Sbjct: 362 PTLDHPLTGIEGVNKLVFEHLVAEGFNTPRTLLLASPEQLSNAASISLEMADHILEQVRK 421 >gi|241889783|ref|ZP_04777081.1| transcription termination factor NusA [Gemella haemolysans ATCC 10379] gi|241863405|gb|EER67789.1| transcription termination factor NusA [Gemella haemolysans ATCC 10379] Length = 343 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 141/336 (41%), Positives = 210/336 (62%), Gaps = 2/336 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +LL+ + EK I D+++ + ++ A + + ++RV+ N TGD + Sbjct: 4 DLLKAIKLIEQEKGIAEDILVEAIELALLSAYKKNFNVAKNVRVDFNRTTGDYKFIIRKD 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + + +L+ A +P+ ++G + P DFGRV Q+AKQ ++Q++REAE+ Sbjct: 64 VVEEVYDDRIEFALEDALKINPAYEVGDIYEVVDLPSDFGRVGAQAAKQALLQRLREAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ + GEI+SGT+ R++ V V LG + ++ +E + E P +K YI Sbjct: 124 EILYKEYIEHEGEILSGTIDRIDSRYVYVKLGKIEAILGENERVKGETYVPQTPIKVYIA 183 Query: 188 DVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V R P VL SR+HP+F+ +LF +EVPEIY+G V++K+VSR+ G R KLAV++ D Sbjct: 184 KVDNPTRGSKPHVLASRSHPEFIRRLFEIEVPEIYSGTVEIKSVSREAGERTKLAVYAED 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +IDPVGACVG +G RV +V EL EKIDI+ W D F+ NAL PA V ++ +DE+ Sbjct: 244 KNIDPVGACVGNKGERVNRIVEELNGEKIDIITWDADPVKFITNALAPAKVEEINIDEEE 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +QLSLAIG++GQNVRLA++LTGW IDI Sbjct: 304 KIANVKVKDDQLSLAIGKKGQNVRLAAKLTGWKIDI 339 >gi|118443498|ref|YP_878211.1| transcription elongation factor NusA [Clostridium novyi NT] gi|118133954|gb|ABK60998.1| transcription termination factor NusA [Clostridium novyi NT] Length = 348 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 5/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I ++ + D++ A + Y G +++V I+ E G+I Sbjct: 2 NAEFIEALREIVKEKGIGEQLLFDTVEDALVSAYKKNYAKVGGNSQNVKVTIDRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ ++ EE + +ISL+ AR+ D +G +V + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKI-EEEPSGVNEISLEDAREIDSRYQMGDIVDLEVTPKSFGRIAAQTAKQVVIQR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER Y EF K +II+GTV R + GNV VDL ++ V+ +E + E + Sbjct: 121 IKEAERKVVYDEFIAKEFDIITGTVIRKDKGNVFVDLEKTEAVLGPNEQMPGEEYNFNQK 180 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQV++SRTHP + +LF +EVPEIY G+V+VK+++R+ GSR K+AV Sbjct: 181 LKLYIVEVKNTTKGPQVVVSRTHPGLVKRLFELEVPEIYAGVVEVKSIAREAGSRTKIAV 240 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++D GACVG +G RVQ +VTEL++EKIDI+ W + ++ NAL PA V V + Sbjct: 241 YSNDENVDATGACVGPKGMRVQNIVTELKNEKIDIIKWDKEPEKYIANALSPARVLSVDI 300 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D++ +++V QLSLAIG+ GQNVRLA++LTGW IDI +E + Sbjct: 301 DDENKSAKIVVEDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSESQVEE 348 >gi|289423074|ref|ZP_06424889.1| transcription termination factor NusA [Peptostreptococcus anaerobius 653-L] gi|289156405|gb|EFD05055.1| transcription termination factor NusA [Peptostreptococcus anaerobius 653-L] Length = 424 Score = 325 bits (834), Expect = 9e-87, Method: Composition-based stats. Identities = 160/410 (39%), Positives = 250/410 (60%), Gaps = 7/410 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E +Q + + ++ ID++V+L + ++ A + +G+ ++R+++N ETGDI ++ Sbjct: 2 NVEFMQALEELVKDRGIDKEVLLETIEQALTSAYKKNFGSAQNVRIDLNRETGDIKVYSQ 61 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+ ++ + +I L AR+ P+ ++G ++ + PMDFGR+A Q+AKQ+++QK+R Sbjct: 62 RVVVDEQDLYDNFLEIELSEAREISPNYELGDIIEHEVTPMDFGRIAAQTAKQIVVQKIR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPG 179 EAER+ Y EF +K E+I+G + R + V +G +GV+ E I E + G Sbjct: 122 EAEREMTYNEFIEKQDELITGEISRTSQRDGKCIVFAQIGKGEGVLLASEQIRGEEYKIG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K Y+ DV + + PQ+LLSR+H + +LF MEVPEI +G VQ+K++SR+ GSR K+ Sbjct: 182 TNMKFYVVDVNKTSKNPQILLSRSHTGLVKRLFEMEVPEIQDGTVQIKSISREAGSRTKM 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D +IDP+GACVG +GSRV+ +V EL DEKIDIV +S D FV +L P+ VTKV Sbjct: 242 AVLSTDENIDPIGACVGTQGSRVRNIVDELGDEKIDIVKYSDDIGQFVEASLSPSKVTKV 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++E VIVP QLSLAIG+ GQN RLA++LT W IDI E + + ++ E+ Sbjct: 302 FVNEKEKSAVVIVPDYQLSLAIGKEGQNARLAARLTNWKIDIKPESDFTEEDERALLEKI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 A+ +E + L E A+ + S ++E D E A EI Sbjct: 362 ASDKLAVE-EEKASKELAEENPAEDMDKEVALESAQEAMEPADVEVAEEI 410 >gi|206901624|ref|YP_002250930.1| transcription termination factor NusA [Dictyoglomus thermophilum H-6-12] gi|206740727|gb|ACI19785.1| transcription termination factor NusA [Dictyoglomus thermophilum H-6-12] Length = 364 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 146/337 (43%), Positives = 220/337 (65%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + + + EK +D++VVL + ++ A + YGT RVEIN +IS+F + +VVE+ Sbjct: 10 VLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFVVKKVVEK 69 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 V + +ISL+ A+ P +G + + P +FGR+AVQ AKQVI+Q ++EAER Y Sbjct: 70 VNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKEAERRILY 129 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 ++K K GE+++GTV R+E GNV V + + V+ E I E G R+++Y+ +VR+ Sbjct: 130 EKYKAKEGELVNGTVVRIEKGNVYVRFPDIEAVLPVKEQIPGEEYWIGRRLRAYLLEVRK 189 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 + P V+LSR+HP F+ +LF +EVPEI G V++ +++R+PG R+K+AV+S +DP+ Sbjct: 190 TTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYSHLPEVDPI 249 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVI 311 GACVG +G R+Q ++ EL EKIDIV+WS D A FV +L PA V + E+ + VI Sbjct: 250 GACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIREEEHKAIVI 309 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VP +Q SLAIG+ GQNVRLA +LT W ID+ T E+ + Sbjct: 310 VPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346 >gi|313885291|ref|ZP_07819042.1| transcription termination factor NusA [Eremococcus coleocola ACS-139-V-Col8] gi|312619397|gb|EFR30835.1| transcription termination factor NusA [Eremococcus coleocola ACS-139-V-Col8] Length = 415 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 146/406 (35%), Positives = 231/406 (56%), Gaps = 5/406 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+Q + EK I DV+ + ++ A + Y ++ V N + G I +F++ + Sbjct: 4 ELVQAMQVLEEEKGISADVIKDALESALVLAYKRNYDQSQNVEVVFNADKGTIKVFQVKK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +I+L A D + ++ + + P DFGR+A Q+AK VI+Q++REAER Sbjct: 64 VVEEVNDPNEEIALSDALDIHKAYELDDTIKFEITPKDFGRIATQTAKHVILQRLREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ EI++GTV+R + + ++LG + V+ E I E L RVK Y+ Sbjct: 124 NIVYDEYIQYEDEILNGTVERQDNRFIYINLGKIEAVMPVREQIPTEELTMDQRVKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGPQ+++SR H F+ +LF EVPEI+NGIV++ +++R+ G R+K+AV S DS Sbjct: 184 KVDKTNRGPQIIVSRAHANFLRRLFENEVPEIFNGIVEIMSIAREAGDRSKVAVRSQDSQ 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDV 305 IDP+G CVG G RV +V EL E IDIV + D A F+ NA+ P+ V VV + E+ Sbjct: 244 IDPIGTCVGAGGERVNTIVAELNGENIDIVEYDDDPAQFIKNAMSPSQVIDVVFNDPENP 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG++GQN RLA++LTG+ IDI +E + + +++ N+ Sbjct: 304 NHCIVVVPDYQLSLAIGKKGQNARLAARLTGYKIDIKSESDFQVYQEEMANQDLTSQEVD 363 Query: 366 INVDEII---AHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + + +V + + E+ + ++E A E Sbjct: 364 MMEGQEVLAADASMVEDPVTESLEVVENMEENPDFEDIIEDEEATE 409 >gi|167746758|ref|ZP_02418885.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662] gi|317471572|ref|ZP_07930918.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA] gi|167653718|gb|EDR97847.1| hypothetical protein ANACAC_01470 [Anaerostipes caccae DSM 14662] gi|316900951|gb|EFV22919.1| transcription termination factor NusA [Anaerostipes sp. 3_2_56FAA] Length = 391 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 147/358 (41%), Positives = 224/358 (62%), Gaps = 5/358 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK ID+DV++ + +S+ A + +G ++ V ++ ETGDI ++ E Sbjct: 3 ELIDALNQLEKEKHIDKDVIMEAIENSLVAACKRDFGNADNVVVNMDRETGDIVVYAEKE 62 Query: 68 VVE----EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE E + QISL A+ DP ++G +V + P DFGR+A A+ VI+QK++ Sbjct: 63 VVETADGEDFDPALQISLAKAKAMDPKYELGDIVRVEITPKDFGRIAAMHARSVIVQKIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 E ER + F K +I++G V+R NV V L +D ++ + E I E +P +R+ Sbjct: 123 EEERRVVFDHFYCKEKDIVTGVVQRYVGENVSVSLDDKTDALLMKSEQIRGEVFQPTERI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K YI +V+ RGP++L+SRTHP + +LF EV EI +GIV++K + R+ GSR KLAV+ Sbjct: 183 KLYIVEVKDTNRGPRILVSRTHPDLVKRLFEKEVAEIQDGIVEIKNIVREAGSRTKLAVW 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D ++DPVGACVGM G+RV A+V +L+ EKIDI+ W+ D ++ NAL P+ V V +D Sbjct: 243 SNDPNVDPVGACVGMNGARVNAIVNDLKGEKIDIINWNEDPCVYIENALSPSKVVSVSVD 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + +V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + E + Sbjct: 303 VEEKSAQVVVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSESQAEEEEELQGYEDYE 360 >gi|299144046|ref|ZP_07037126.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518531|gb|EFI42270.1| transcription termination factor NusA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 379 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 148/347 (42%), Positives = 230/347 (66%), Gaps = 2/347 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + EK I ++V+ + ++ + R +GT +++V+IN ++G+I++F L Sbjct: 2 NEEFIGALNELEKEKGISKEVIFEALESALVSSYRKNFGTSQNVQVDINKDSGEINVFAL 61 Query: 66 LEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 ++V +V E+ QI + A+D D ++G V S+ + P +FGR+A Q+AKQV+IQ+++ Sbjct: 62 KDIVADVDFEDENLQIPISKAKDIDAKFELGDVYSEKIKPANFGRIAAQTAKQVVIQRIK 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AERD + +F D+ EII+G V+RV YGNV DLG ++ ++ E I E R GDR+K Sbjct: 122 DAERDIIFEDFTDRENEIITGQVQRVSYGNVYFDLGKTEAILPVAEQIKGEVYRQGDRLK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +V++ +GPQ++LSR+HP + +LF +EVPEI GIV+V ++SR+ GSR K+AVFS Sbjct: 182 LLLLEVKKTTKGPQIILSRSHPNLVKRLFELEVPEISEGIVEVYSISREAGSRTKIAVFS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +DP+GACVG +GSRV+A+V EL DEK+DIV++ F+ NAL P+ V KV +E Sbjct: 242 RNEDVDPLGACVGYKGSRVKAIVDELHDEKVDIVIYEKQIDKFIANALSPSKVEKVFANE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+ GQN RLA++LT W IDI + + Sbjct: 302 KEKSALVVVPDYQLSLAIGKEGQNARLAAKLTNWKIDIKSVSQFEEY 348 >gi|159897005|ref|YP_001543252.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|159890044|gb|ABX03124.1| NusA antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 444 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 150/340 (44%), Positives = 224/340 (65%), Gaps = 4/340 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS---DIRVEINPETGDISL 62 + + +A E+ I R+ V V+ ++ A R G+ D+++E+ P TG I + Sbjct: 2 KSDFYAAISQIAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIRV 61 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +VV+EV + +I ++ AR+ ++IG V P DFGR+A Q+AKQV++Q++ Sbjct: 62 YAEKQVVDEVMDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQRI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +E ERD Y E+ D+ GEI++ TV+R GNVI+++G ++ ++ + E IS +N R G R+ Sbjct: 122 KEVERDHIYGEYFDREGEIVTATVQRTAKGNVILEVGRAEAILPQKEQISHDNYRHGQRL 181 Query: 183 KSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K Y+ + RR+ RGP+++ SRTH + +LF MEVPEIYNG V++K+++R+PG R+K+AV Sbjct: 182 KVYLMEARRDDPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKVAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + IDPVG+CVGMRG R+Q +V EL EKID+V W D F+ NAL PA V +V L Sbjct: 242 HARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEVHL 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 DE V+VP +QLSLAIG+ GQNVRLA++L GW IDI Sbjct: 302 DEGEKTATVVVPDKQLSLAIGKEGQNVRLAAKLVGWRIDI 341 >gi|251778646|ref|ZP_04821566.1| transcription termination factor NusA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082961|gb|EES48851.1| transcription termination factor NusA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 148/373 (39%), Positives = 235/373 (63%), Gaps = 4/373 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y + ++++ IN E G+I Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A+ +P ++ VV + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDVVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R + Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEM 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V + Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQD 361 Query: 362 FMQAINVDEIIAH 374 + V E +A Sbjct: 362 VDMSEEVTENVAE 374 >gi|188588167|ref|YP_001920615.1| transcription elongation factor NusA [Clostridium botulinum E3 str. Alaska E43] gi|188498448|gb|ACD51584.1| transcription termination factor NusA [Clostridium botulinum E3 str. Alaska E43] Length = 384 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 147/373 (39%), Positives = 235/373 (63%), Gaps = 4/373 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y + ++++ IN E G+I Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R + Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEM 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ NAL PA V + Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFISNALSPAKVINAEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEQEKAIDQD 361 Query: 362 FMQAINVDEIIAH 374 + V E +A Sbjct: 362 VDMSEEVTENVAE 374 >gi|172057849|ref|YP_001814309.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15] gi|171990370|gb|ACB61292.1| NusA antitermination factor [Exiguobacterium sibiricum 255-15] Length = 375 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 153/360 (42%), Positives = 224/360 (62%), Gaps = 5/360 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLE 67 LL+ + +A EK ID+++++ + ++ A R +G S+ ++VE + +TGDI +F L E Sbjct: 5 LLEAIEQIAKEKEIDKNIIIDALEQALISAYRRNFGKESEAVKVEFDQQTGDIRVFALKE 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE + Q+SL+ A + DP+ ++G + P DFGRVA Q+AKQ++ QK+REAER Sbjct: 65 VVERLTQPEEQLSLEEAHEIDPTYELGDFHKVEVTPGDFGRVAAQTAKQIVTQKMREAER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +R Y F D+ EI++G V+R + N+ V+L + V+ E + E + +K Y+ Sbjct: 125 ERIYNHFADREDEIMTGMVERQDARNLYVNLEGIEAVLTTHEQMPNERFGIREYIKVYVT 184 Query: 188 DVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 V +G +L+SRTHP + +LF +EVPEI +G V+VK+V+R+ G R+K+AV S Sbjct: 185 KVDPMVKGSGASILVSRTHPGLLKRLFEIEVPEIASGEVEVKSVAREAGDRSKIAVAS-- 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG +G+RVQ +V EL EKIDIV +S D +V NAL PA V V ++E Sbjct: 243 DEIDPVGACVGQKGARVQRIVNELNGEKIDIVRYSDDPKEYVANALSPAQVVAVYVNEPA 302 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+RGQN RLA++LTGW IDI +E E KD + + Sbjct: 303 KATIVVVPDFQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAESMELKDVFMKVEPATAE 362 >gi|187934771|ref|YP_001885468.1| transcription elongation factor NusA [Clostridium botulinum B str. Eklund 17B] gi|187722924|gb|ACD24145.1| transcription termination factor NusA [Clostridium botulinum B str. Eklund 17B] Length = 384 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 146/373 (39%), Positives = 237/373 (63%), Gaps = 4/373 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y + ++++ IN E G+I Sbjct: 2 NEEFVGALKEIVKEKGISEDLLFTTIEDAMVAAYKKNYANLNTSAQNVKISINRENGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +ISL+ A+ +P ++ +V + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKMVVDEVYDEVTEISLEEAKAINPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K+K +II+GT+ R + G V V LG +G+I +E +S E+ R ++ Sbjct: 122 IKEAERNIIYSEYKEKEFDIITGTILRKDKGMVFVSLGKIEGIIGPNEQMSNEDYRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +G QV +SRTHP + +LF +EVPEI+NG+V++K++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNTSKGAQVHVSRTHPGLVKRLFELEVPEIFNGVVEIKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ W+ D A F+ NAL PA V + Sbjct: 242 YSNDEEVDAMGACVGPKGIRVQNIVNELKNEKIDIIKWNKDPAEFISNALSPAKVISAEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ +++V +QLSLAIG+ GQNVRLA++LT W IDI ++ + + Q Sbjct: 302 NEESKSAKIVVADDQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQQEALEAEKEKAMDQN 361 Query: 362 FMQAINVDEIIAH 374 + +V E +A Sbjct: 362 ADISEDVTENVAE 374 >gi|297180246|gb|ADI16466.1| transcription elongation factor [uncultured bacterium HF770_11D24] Length = 467 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 154/431 (35%), Positives = 244/431 (56%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + EK +DR++++S + D++ AA+ G ++R EI+ + GDI F Sbjct: 2 NAEFIASMEYWEREKGLDREILISAVEDAMVSAAKRAVGPARELRCEIDRKDGDIRAFAT 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L VVE V + +ISL A+ P + + + P +FGR+A Q+AKQ ++Q +R A Sbjct: 62 LIVVETVTDKQNEISLDSAQRIKPDAQLEEELEVEVTPKNFGRIASQNAKQALMQAIRRA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ Y EFKD+VG+I+SG V+ + +V+VDLG + ++ E + E + G+R++ Sbjct: 122 EKALIYTEFKDRVGDIVSGEVRGFDRSDVLVDLGKFEALLPNRERVPTEEYQRGERIRCL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V +++LSR F++KLF +EV EI +G +++KA++R+PG R KLAV S D Sbjct: 182 VKAVEGSDSSSEIILSRRDSDFVIKLFQLEVSEINDGTIEIKAIAREPGFRTKLAVHSRD 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG+RG RV+ +V EL +EKIDI+ W D T+V N+L PA + ++ + +D Sbjct: 242 EKVDPVGACVGLRGQRVKNIVRELNNEKIDIIRWDSDVETYVTNSLAPAQLKRLEIQQDR 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 R+ V+V +QLSLAIGRRGQN RL S LTGW IDI E+E + ++ + Sbjct: 302 KRVHVLVDPDQLSLAIGRRGQNARLTSLLTGWQIDIDPEQEVRVGFEEQVADAVDALAAI 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 +++ A LV G ++ L V+ S++A I G E + E + Sbjct: 362 PGIEKEQADALVHAGLLTLDALNGVEASDLADIPGLAEHAESVLAAAHAEKVRRAGAGTN 421 Query: 426 KKIRELGVSEE 436 I + + Sbjct: 422 PLINDAAPEAD 432 >gi|160932906|ref|ZP_02080295.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753] gi|156867980|gb|EDO61352.1| hypothetical protein CLOLEP_01747 [Clostridium leptum DSM 753] Length = 361 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 146/358 (40%), Positives = 215/358 (60%), Gaps = 3/358 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ + + E+ I D +L + +I A +S Y D + +NP+TG ++ Sbjct: 4 EVFEALSLLEKERGIPVDFMLDKIKKAILTACKSSYNGNDDAIINMNPDTGVFEVYLQKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL AR+ DP+ +G V L FGR+A Q+A+ +I Q +R+ ER Sbjct: 64 VVEEVEDKGREISLLDAREIDPNTAVGEKVGVQLDTKQFGRIAAQTARNIIRQGIRDGER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF+ + E+++ TV+R++ + + +G ++ V+ + E + E LR GD VK Y Sbjct: 124 GQMMQEFQSRHQELVTATVERIDPRSGAATLKIGKAEAVLPKSEQVGGEELREGDHVKVY 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+ ++GP+ ++SRTHP + +LF EVPEIY+G V++K+VSR+ GSR KLAV+S D Sbjct: 184 VVDVKETEKGPRAMISRTHPDLVKRLFETEVPEIYDGTVEIKSVSREAGSRTKLAVWSKD 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ++D VGAC+G RG+RV VV EL EKIDI+ +S D A F+ AL PA V V +D D Sbjct: 244 PNVDAVGACIGARGARVGNVVNELGGEKIDIIEYSEDPAKFIAAALSPADVLSVEVDPDG 303 Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 +V VP QLSLAIG +GQN RLA++LTGW IDI E E + Sbjct: 304 MKACQVTVPDHQLSLAIGNKGQNARLAAKLTGWKIDIKPESGFYDPDAHKAAEAEEQE 361 >gi|94971244|ref|YP_593292.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|94553294|gb|ABF43218.1| NusA antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 534 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 166/422 (39%), Positives = 251/422 (59%), Gaps = 8/422 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL + DA++ EK ID VV++ + D+I A R Y T + R ++ E+G I + + + Sbjct: 4 ELYNVIDALSREKGIDPQVVVTAVEDAIVVATRKFYKTGENFRAVLDKESGQIRAYAVRQ 63 Query: 68 VV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV +E+E+ Q+ L+ AR+ DP+ ++GG + GR+A Q AKQVI QKVRE Sbjct: 64 VVINEDELEDPATQVPLEEARELDPAAEVGGELLIEKKTDMLGRIAAQLAKQVIFQKVRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AERD Y E+ +VGEI++ T+KR E ++I D+G ++ + + E E+ G+RV+ Sbjct: 124 AERDTVYNEYIGRVGEIVNATMKRNEGPDLIWDIGKAEARMPKKEQSRLESFAIGERVRV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V + +GPQV++SR P+ + LF EVPEIY+ V ++A++R+ G R K+AV S Sbjct: 184 VITRVEKASKGPQVIVSRAAPELVSHLFQTEVPEIYDNTVVIRAIAREAGERTKIAVMSK 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D +D VGACVGM+G RVQ+++ ELR EKIDI+ + D+ TF AL+PA V++V + E Sbjct: 244 DKDVDAVGACVGMKGMRVQSIIRELRGEKIDIIEYHEDAVTFAEKALQPAKVSRVTILES 303 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +EVIV QLSLAIG++GQNVRLA++L GW IDI +EEE ++ + + Sbjct: 304 GDKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMSALVNPSI 363 Query: 364 QAI----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + ++ E I L A G VE LA + ++ + G +T +I Y Sbjct: 364 TPLDKVPDLGEAIIEKLSAAGINSVEALADMTPEQLEEVPGIGPKTVDKIFVAVNAYFSA 423 Query: 420 ID 421 +D Sbjct: 424 LD 425 >gi|126640415|ref|YP_001083399.1| transcription elongation factor NusA [Acinetobacter baumannii ATCC 17978] Length = 418 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 169/423 (39%), Positives = 249/423 (58%), Gaps = 24/423 (5%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG V + ++FGR+A Q AKQVI+QK+REAER ++ KVGE+I G VK+ Sbjct: 18 IGDVRELEVESIEFGRIAAQIAKQVIVQKIREAERALVADAYESKVGELIYGEVKKQTKD 77 Query: 153 NVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 I+DLG++ + + R+E I +E LRP RV + +Y V RE RG Q+LLSR P+ ++ L Sbjct: 78 GFIIDLGDNAEAYLAREEMIPKEILRPKQRVNAILYSVNREGRGAQLLLSRAKPEMLIAL 137 Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 E+PEI I+++KA +R PG RAK+AV ++D IDPVGAC+GMRG+R+QAV EL Sbjct: 138 MKKEIPEISEEIIEIKAAARQPGVRAKIAVKTNDHRIDPVGACIGMRGTRIQAVQQELNG 197 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV-PKEQLSLAIGRRGQNVRL 330 E+ID+VVWS D A ++ +AL PA V+ +VLDED ++I +QL+ AIG +GQNVRL Sbjct: 198 ERIDVVVWSDDPAQYIASALEPADVSGIVLDEDAKSADIIFATNDQLARAIGSQGQNVRL 257 Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390 AS LTG+ +D++ EEE +Q + + F+ ++++E +A LV GF +EE+A V Sbjct: 258 ASDLTGYKLDMMLEEEYRARQQNEAQQYLDMFVSRLDIEEDLAMALVEMGFTSLEEIAYV 317 Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA 450 IE D E +Q RA+E + Q+ I+E S +L ++ G+ S+I + Sbjct: 318 PAETFDEIE-LDAELVELLQSRAKEAALTDALKQQENIQE--PSADLLNMEGMTSEIAYS 374 Query: 451 LGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 L GI T++DLA + DD+ G ++ +I+ AR Sbjct: 375 LAARGIITVDDLADQATDDISDIE-----------------GLGHEKAGQLIMKARES-- 415 Query: 511 WIE 513 W Sbjct: 416 WFN 418 >gi|312972559|ref|ZP_07786732.1| transcription elongation protein nusA [Escherichia coli 1827-70] gi|310332501|gb|EFP99714.1| transcription elongation protein nusA [Escherichia coli 1827-70] Length = 335 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 143/352 (40%), Positives = 218/352 (61%), Gaps = 18/352 (5%) Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 +I R++ + REN RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI + Sbjct: 1 MILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEV 60 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 +++KA +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + Sbjct: 61 IEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 120 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A FVINA+ PA V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T Sbjct: 121 AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 180 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 ++ Q + + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE Sbjct: 181 VDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE 240 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA 463 T ++ RA+ L I ++ + + +++L ++ G+D + L G+ T+EDLA Sbjct: 241 PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLA 300 Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +DDL G ++ ++I+ AR + W E Sbjct: 301 EQGIDDLADIE-----------------GLTDEKAGALIMAAR-NICWFGDE 334 >gi|281355268|ref|ZP_06241762.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548] gi|281318148|gb|EFB02168.1| NusA antitermination factor [Victivallis vadensis ATCC BAA-548] Length = 414 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 157/410 (38%), Positives = 240/410 (58%), Gaps = 7/410 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL I + + E+ I RD ++ + +I AAR S+++V+I+P TG I + LE Sbjct: 4 ELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWATLE 63 Query: 68 VVEEVENYTC-QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE EN TC Q+ + AR+R P + +G V + P +FGR+A Q+A+Q I+Q++R+AE Sbjct: 64 VVE--ENPTCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLRKAE 121 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++ EF D++G+IISGTV+R E GN+I+D ++G++ E I E PGD +++ + Sbjct: 122 KENVQEEFADRIGQIISGTVRRFEAGNIIIDFQKAEGIMPSKEKIHDEQYMPGDIIRALL 181 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V GP +++SR+ P+F+ +LF E+ EI++G+V++ ++R+ G R K++V S+D Sbjct: 182 LRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVMSTDP 241 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +DPVGACVGMRG RV+ + EL +E+IDIV + D + NAL PA V V ++E Sbjct: 242 RVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVNEAKH 301 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 + V V EQ LA G++ QNVRL S+L GW I+I EEE E+ + Q + Sbjct: 302 ELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIAAQKL 361 Query: 367 ----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 V E A LLV G+ V+ + + IEG D R Sbjct: 362 AEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGIDTAEMQNALER 411 >gi|170017453|ref|YP_001728372.1| transcription elongation factor [Leuconostoc citreum KM20] gi|169804310|gb|ACA82928.1| Transcription elongation factor [Leuconostoc citreum KM20] Length = 363 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 221/359 (61%), Gaps = 4/359 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R +V+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIERAIVIEALEDALKAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKH 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ EN +ISL+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDEDFENEDTEISLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIMQKIREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+K Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDSRFLYMTLPGNQEAAMAPNDQMPNEHYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-E 303 D +DPVGA VG RG RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D E Sbjct: 244 DPDLDPVGAMVGQRGGRVQSVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFDSE 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + + Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSETEAAKDLGNQTVSSVEEN 362 >gi|239907795|ref|YP_002954536.1| transcription elongation protein NusA [Desulfovibrio magneticus RS-1] gi|239797661|dbj|BAH76650.1| transcription elongation protein NusA [Desulfovibrio magneticus RS-1] Length = 463 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 173/433 (39%), Positives = 272/433 (62%), Gaps = 8/433 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL + D ++ ++ IDRD+++ + ++++ + YG D+ V N E G+I +++ Sbjct: 1 MTELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQF 60 Query: 66 LEVVEEVEN--YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE+ + +I L A+ DP++ + + L D GR+A QSAKQVIIQ++R Sbjct: 61 KVVVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMR 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 +AE++ Y E+KD+ GEIISG ++R + I++LG ++ ++ ++E I RE + GDRV+ Sbjct: 121 DAEQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGRTEALLPKEEQIPRERYKRGDRVQ 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 ++I +V RGPQ+++SRTH +M LF EVPE+ +G V++ AV+RDPGSRAK+AV S Sbjct: 181 AFIIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVIS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D +DPVGACVG+RGSR+Q +V ELR E+IDIVVW+P+ A++ NAL P+ VT++ +DE Sbjct: 241 KDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D +EV+V +QL+LAIGR+GQNV+LA++L GW IDI+TE R ++ N +F Sbjct: 301 DEKSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTES-----RFREANASKKFLE 355 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 Q +V EI ++A GF +E+LA I +I G +++ A + + D Sbjct: 356 QLASVAEIHVDNIIAAGFVSMEQLAEADDEAIDAIVGMTPSKRDDLRA-ALKLMGAFDKP 414 Query: 424 LQKKIRELGVSEE 436 + E+ Sbjct: 415 APADDEDAPTDED 427 >gi|297588445|ref|ZP_06947088.1| transcription termination factor NusA [Finegoldia magna ATCC 53516] gi|297573818|gb|EFH92539.1| transcription termination factor NusA [Finegoldia magna ATCC 53516] Length = 424 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 145/348 (41%), Positives = 219/348 (62%), Gaps = 6/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59 + ++ D + K I R+VV + ++ K+ + S + V IN + G Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++L+ + VVE VE+ +ISL+ A+ D+G V + P +FGR+A Q+A+ ++I Sbjct: 62 VNLYAIKTVVENVEDKNTEISLEEAKTIKRKYDLGDKVKIEITPKNFGRIAAQTARNIVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKSEEYTPN 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+ Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +DE VIV ++QLSLAIG+ GQN RLA++LT W IDI + Sbjct: 302 FIDEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLNQY 349 >gi|226323231|ref|ZP_03798749.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758] gi|225208421|gb|EEG90775.1| hypothetical protein COPCOM_01003 [Coprococcus comes ATCC 27758] Length = 393 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 153/341 (44%), Positives = 226/341 (66%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I RD ++ + +S+ A ++ +G +I+V ++ ET D +L + Sbjct: 2 NTELLEALTILEEEKDISRDTLMDAIENSLINACKNHFGKADNIKVIMDKETCDYTLIQE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ QISL A+ DPS +IG +V P+ FGR+A Q+AK +I+QK+RE Sbjct: 62 KTVVEEVEDKVEQISLADAKMIDPSYEIGDIVQIPVESKSFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV V+LG +D ++ +E + E P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGVVQRYIGKNVSVNLGKADAILTENEQVKGEKFEPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +GIV++K+++R+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFEAEVTEVRDGIVEIKSIAREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV AVV ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVGAVVNELRGEKIDIINWSDNPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTG+ IDI E + Sbjct: 302 RTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKNETQ 342 >gi|182414628|ref|YP_001819694.1| NusA antitermination factor [Opitutus terrae PB90-1] gi|177841842|gb|ACB76094.1| NusA antitermination factor [Opitutus terrae PB90-1] Length = 408 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 143/406 (35%), Positives = 246/406 (60%), Gaps = 4/406 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK I R +++ +A++++ AA+ + ++++EIN + G + + LL+ Sbjct: 4 EILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWCLLK 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V N +I ++ A+ P IG ++ + P GR+A Q+A+Q ++Q++R+ E+ Sbjct: 64 VVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DR + +FKD+VG I++GTV+R E ++ +DLG ++ V+ E + E +PG+R++ + Sbjct: 124 DRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGKAEAVMPAKEQVPGEEYQPGERIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 ++ RGP+++L+R P+F+ +LF +EV EI +G V+++A +R+PG R K+AV S+D Sbjct: 184 NIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVISTDPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+ +V EL EKIDI+ + +I A++PA+ ++ LDE R Sbjct: 244 VDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDEKNHR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 I + V + L++AIGR+GQN RL S+L GW +DI EE ++A Sbjct: 304 ILLKVATDDLAIAIGRKGQNARLTSRLIGWRLDI---EEFRAVGDDPRGNAIASLVKAFA 360 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +D +A LV G V+ +++ GF E A +I GR Sbjct: 361 LDATVAGRLVDMGINSPAAFEGVEANDLVD-AGFTEAEATDIIGRV 405 >gi|160947563|ref|ZP_02094730.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270] gi|158446697|gb|EDP23692.1| hypothetical protein PEPMIC_01498 [Parvimonas micra ATCC 33270] Length = 378 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 225/359 (62%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + L+ D + EK + ++++ + ++ K+ +G ++++ IN TG + LF + Sbjct: 13 DFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVELFAIKT 72 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE VE+ +ISL A+ +G VS L MDFGRVA Q+A+ ++IQK+++AER Sbjct: 73 VVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQKIKDAER 132 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y +F+DK E+ISG ++R++ N+ ++LG + ++ E I E R G+R+K Y+ Sbjct: 133 EVIYNDFQDKERELISGQIQRIDRNNLFINLGKLEAIVTPPEQIKSEVYRVGERLKFYVK 192 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V+ +G QVLLSR+ F++KLF +EVPEI +G V++++++R+PGSR K+AVFS + Sbjct: 193 EVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAVFSKNDD 252 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG + SRV +++ EL+ EKIDI+V+S + ++ N+L P+ V V +E R Sbjct: 253 VDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFTNESENR 312 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 +IVP QLSLAIG+ GQN RLA++LT W IDI E+ + + E Sbjct: 313 ARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDIKGLEKYKEDIENGLIEVGFDGEHEF 371 >gi|218509055|ref|ZP_03506933.1| transcription elongation factor NusA [Rhizobium etli Brasil 5] Length = 266 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 201/264 (76%), Positives = 238/264 (90%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 VSANRLELLQIADAVA EK IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I Sbjct: 3 VSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIR 62 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 L RLLEVV++ E+Y+ QI L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QK Sbjct: 63 LQRLLEVVDKAEDYSTQIPLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAERDRQ+ EFKD+VGEI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDR Sbjct: 123 VREAERDRQFDEFKDRVGEIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDR 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV Sbjct: 183 VRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAV 265 S+DSSIDPVGACVGMRGSRVQAV Sbjct: 243 ISNDSSIDPVGACVGMRGSRVQAV 266 >gi|313892549|ref|ZP_07826136.1| transcription termination factor NusA [Dialister microaerophilus UPII 345-E] gi|313118946|gb|EFR42151.1| transcription termination factor NusA [Dialister microaerophilus UPII 345-E] Length = 373 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 143/332 (43%), Positives = 216/332 (65%), Gaps = 4/332 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78 D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN + Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF + Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++ Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 LAIG+ GQN RLA++LT W IDI +E + + + Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSESQAAED 350 >gi|304439999|ref|ZP_07399892.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371491|gb|EFM25104.1| transcription termination factor NusA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 412 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 146/358 (40%), Positives = 233/358 (65%), Gaps = 1/358 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFR 64 E + + + EK I +D+V + ++ + + +G + +I V+IN E G+I +F+ Sbjct: 2 NEEFILALNQLESEKGIKKDIVFEALEAALISSYKKNFGMSNQNIVVDINKENGNIKIFK 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV+EVE+ +ISL+ A + +G +V + PM FGR+A Q+AKQV+IQK+++ Sbjct: 62 EMTVVDEVEDEDTEISLEDAEEISSKYKVGSIVRIEIDPMKFGRIAAQTAKQVVIQKIKD 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE+D Y +F D+ GE+I+G V+R G V +DLG S+G++ +E I E+ G+R K Sbjct: 122 AEKDIIYDDFIDREGELITGQVQRSSKGYVFIDLGKSEGILPPNEQIKGEDYSHGNRYKM 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V++ +GPQ++LSR+HP + +LF +EVPEI++GIV+V +SR+ GSR K+AVFS Sbjct: 182 IILEVKKTPKGPQIILSRSHPNLIKRLFELEVPEIHDGIVEVFNISREAGSRTKIAVFSK 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +DP+GACVG +G+RV+A++ + +EKIDI++W D F+ NAL P+ V KV +D+ Sbjct: 242 SEDVDPLGACVGFKGARVKAILDSIGEEKIDIIIWDRDIDHFIANALSPSNVEKVFIDDS 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + V+VP QLSLAIG+ GQNVRLA++LT W IDI + + + + + + Sbjct: 302 NKQALVVVPDYQLSLAIGKEGQNVRLAAKLTNWKIDIKSVSQFEEYLEAENMTEDELY 359 >gi|332638631|ref|ZP_08417494.1| transcription elongation factor NusA [Weissella cibaria KACC 11862] Length = 379 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 146/375 (38%), Positives = 235/375 (62%), Gaps = 2/375 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ EK I +V++ + ++++KA Y ++ V+ + + G+I ++ + Sbjct: 4 ELVNALDALEQEKGIKAEVLVEAIEEALKKAYEKNYDESENVEVQFDQKKGNIKVYSVKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEE++ QI+L+ A + + + +IG + + P DFGR+A Q+AKQ+I+QKVREAER Sbjct: 64 VVEEIDEPYEQITLEEALELNKAYEIGDEIRFEVTPADFGRLAAQTAKQIIMQKVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186 Y +F E+I+G V+R + + + L GN + +++ + + E+ R GD++K + Sbjct: 124 GVVYDKFIGYENEVITGEVERQDSRFLYIILPGNQEAAMKQGDQMPNESYRMGDKIKVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V+ EQ+GPQV +SRTHP+ + +LF EVPE+++G V++K+++R+ G R+K+AV+S +S Sbjct: 184 SQVQNEQKGPQVFVSRTHPELVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSHNS 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DV 305 ++D VG VG RG+RVQAVVTEL E +DIV W+ D A F+ NAL PA V V+ D + Sbjct: 244 NLDAVGTMVGQRGARVQAVVTELSGENMDIVEWTEDPAQFIKNALNPAEVVDVIFDPTND 303 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+VP QLSLAIG+RGQN RLA++LTG+ IDI E E N+ + Sbjct: 304 RAVTVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESERDAVVADMANKENESANAP 363 Query: 366 INVDEIIAHLLVAEG 380 + ++ +E Sbjct: 364 VIEADVADDFEASEE 378 >gi|329121255|ref|ZP_08249882.1| transcription termination factor NusA [Dialister micraerophilus DSM 19965] gi|327470189|gb|EGF15652.1| transcription termination factor NusA [Dialister micraerophilus DSM 19965] Length = 373 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 143/332 (43%), Positives = 216/332 (65%), Gaps = 4/332 (1%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV----ENYTCQ 78 D ++V + + + A + G+ + V N ETG+ ++ VVEE+ EN + Sbjct: 19 DEEIVFNALEMVLLTAYKKETGSNAKSSVTFNRETGEYHIYAEKTVVEEIDPLSENAINE 78 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 +++ A+ D +++ G + + P +FGRVAVQ+AKQV+IQK+REAER Y EF + Sbjct: 79 VTVAEAKKYDENLEAGDLFRIEVTPENFGRVAVQTAKQVMIQKLREAERGSIYDEFSGRE 138 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 G+II+GTVK + V VDLG +G++ E I E+ P D++K YI +VR+ +GP++ Sbjct: 139 GDIITGTVKWSDDRTVYVDLGRVEGILPFSEQIEGEHFAPNDKIKCYISEVRKTTKGPEI 198 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 LSR P+ + +LF +EVPEIY+G++++KAV R+ GSR+K+AV++ D ++DP+GACVG Sbjct: 199 FLSRKSPELLKRLFEVEVPEIYSGVIEIKAVVREAGSRSKIAVYTMDPTLDPIGACVGPE 258 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS 318 G RV+ +V EL DEKIDIV W D A ++ NAL P+ V V + E+ V+VP QLS Sbjct: 259 GQRVRNIVNELHDEKIDIVRWDEDPAVYIANALSPSKVISVSIWEEENSSYVVVPDYQLS 318 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 LAIG+ GQN RLA++LT W IDI +E + + + Sbjct: 319 LAIGKAGQNARLAAKLTNWKIDIKSESQAAED 350 >gi|328950381|ref|YP_004367716.1| NusA antitermination factor [Marinithermus hydrothermalis DSM 14884] gi|328450705|gb|AEB11606.1| NusA antitermination factor [Marinithermus hydrothermalis DSM 14884] Length = 397 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 147/374 (39%), Positives = 227/374 (60%), Gaps = 10/374 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA--RSLY-------GTMSDIRVEINPE 56 E ++ VA E+ + + ++ +++ KA + + G + V ++P+ Sbjct: 2 NKEFVEALQHVALERGVSPEELIQAFEEALAKAYVRQKGFRPKEVEEGKGPLVEVHLDPQ 61 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 G I + + VVE+VEN +I+L A DP + +G + P+ P +F R+AVQ+AKQ Sbjct: 62 QGTIEVLEIKRVVEKVENPEREIALADALTYDPEVQVGEEMEFPVDPEEFSRIAVQTAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175 ++ Q+++EAER+R Y E+KDK GEI++G V RV+ GNV VDLG + ++ E I E Sbjct: 122 ILTQRLKEAERNRVYEEYKDKKGEILTGQVTRVDNRGNVYVDLGRGEALMPPREQIPTER 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 PG R+K Y+ +V+R +GP +++SR H + + L EVPEI G+V+VKA++R+PGS Sbjct: 182 YYPGQRIKVYLKEVQRSSKGPSLIVSRAHEELLRYLLKQEVPEIAEGVVEVKAIAREPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WSP+ F+ NAL PA Sbjct: 242 RSKVAVMSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSPNPREFIRNALSPAT 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V + +D + G V V K+Q SLAIG+ GQNVRLAS+LTG+ ID E S + Sbjct: 302 VGAIEIDPETGHAAVTVAKDQHSLAIGKAGQNVRLASKLTGYEIDFKEAEVVSDLDEALA 361 Query: 356 NERTQFFMQAINVD 369 + I+ D Sbjct: 362 KAAEKEEGVTISSD 375 >gi|319937395|ref|ZP_08011802.1| transcription termination-antitermination factor [Coprobacillus sp. 29_1] gi|319807761|gb|EFW04354.1| transcription termination-antitermination factor [Coprobacillus sp. 29_1] Length = 481 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 151/433 (34%), Positives = 251/433 (57%), Gaps = 10/433 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 +Q + + EK I+++VVL + ++++K+ + YG S IRV+IN G I L+ + Sbjct: 6 FIQALELLESEKGIEKEVVLEALKEALEKSYKKNYGGPESIIRVDINENNGKIRLYEIKH 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV++V + ++SL+ A+ +P IG V + + P FGR+A KQ++ QK+REAE+ Sbjct: 66 VVDDVNDEDFELSLEEAQMINPKYQIGDDVVNEIDPEVFGRLAAVQTKQLLKQKIREAEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +II+G V RVE I+++G + ++ ++ I E + G +K Y+ Sbjct: 126 ETLYNEFVDKKDDIITGIVDRVEERFAIINIGRTGALLPSNQQIPGETIYEGQHLKVYVS 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV R +G + +SRT P + +LF MEVPEIY+G V++K+VSR+ G R+K+AV++++ + Sbjct: 186 DVERNTKGTHIGVSRTEPGLVKRLFEMEVPEIYDGTVEIKSVSREAGDRSKIAVYTTNEN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+G+CVG +GSRV+ VV EL E IDIV W+ + F+ +AL P+ V V ++E+ Sbjct: 246 VDPIGSCVGPKGSRVRNVVNELNGEMIDIVEWNENPVIFISHALSPSEVVNVDINENDHS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP QLSLAIG++GQN RLA +LTGW IDI + E + + Sbjct: 306 ALVIVPDNQLSLAIGKKGQNARLAVRLTGWKIDIKSVSEAAREGIIYGQDAEFEKTFVEE 365 Query: 368 VDEII---AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 + + +++ E F ++E++ I+E +E E I + +E + + Sbjct: 366 MTKDEPVIEDVMIEESFEELEDIIEEPITENIIVE---EPVVQPIVEEVKADVEVTEPEI 422 Query: 425 QKKIRELGVSEEL 437 + + V ++ Sbjct: 423 ---LLDDEVENDM 432 >gi|254369910|ref|ZP_04985919.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp. holarctica FSC022] gi|157122880|gb|EDO66997.1| hypothetical protein FTAG_01671 [Francisella tularensis subsp. holarctica FSC022] Length = 447 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 149/476 (31%), Positives = 275/476 (57%), Gaps = 38/476 (7%) Query: 47 SDIRVEINPETGDISLFRLLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP 103 +I V+I+ TGD R+ +V E++ +Y+ ++ V +++ ++ G V+ +P+ Sbjct: 1 MNIEVKIDRVTGDFKADRVWHIVSEDEDLIDYSKELYEDVVQEKGYNVKAGDVMREPVEV 60 Query: 104 MDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-D 162 ++GR+A AKQ++++K++ ER++ +++K+G+I+ G +KR Y ++VDLGN+ + Sbjct: 61 KEYGRIAATMAKQILMKKIKNFEREKSARFYQNKIGDIVYGEIKRTTYEILVVDLGNNAE 120 Query: 163 GVIRRDETISRENLRPGDRVKSYIY--DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 G++ + + I+RE R GD++++ + + + ++LSR+ + LF +EVPE+ Sbjct: 121 GILPKKDLIARERYRVGDKIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVE 180 Query: 221 NGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 ++ + V R+ G R+K+ V S+D IDP GACVG+RGSR+ ++++EL EK+D+++W+ Sbjct: 181 EELINIVNVVREHGFRSKVTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWN 240 Query: 281 PDSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 D + IN+L P A + +V +DE+ ++++V +E LS AIG+ G NVRLAS L GW Sbjct: 241 EDIVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGW 300 Query: 338 TIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 I+++++ E + + F++A+++D A +L+ EG +E+LA + +E+ Sbjct: 301 KINVLSDAEQEEKQ----MSIVEKFVEALDIDHNFALVLIEEGIETLEDLAYLDRAELLE 356 Query: 398 IEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIK 457 IEGFDEE E+Q RA+ + + +++L + G+ + L +N I Sbjct: 357 IEGFDEEIVDELQERAKAVILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIV 410 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 TMEDLA SVD+LL + ++Q ++I+ AR W E Sbjct: 411 TMEDLAELSVDELLDI-----------------VDIDEEQATNLIMQARAP--WFE 447 >gi|296111951|ref|YP_003622333.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU 11154] gi|295833483|gb|ADG41364.1| transcription elongation factor NusA [Leuconostoc kimchii IMSNU 11154] Length = 363 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 219/359 (61%), Gaps = 4/359 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIERTVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKS 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ EN +I+L+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDEDFENEDTEIALQDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + ++ + E+ R GDR+K Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDARFLYLTLPGNQEAAMAPNDQMPNEHYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D + Sbjct: 244 DTDLDPVGAMVGQRGGRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFDPE 303 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + D + Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAASALTNDVPTTDKTN 362 >gi|299139239|ref|ZP_07032415.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8] gi|298598919|gb|EFI55081.1| transcription termination factor NusA [Acidobacterium sp. MP5ACTX8] Length = 544 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 170/438 (38%), Positives = 253/438 (57%), Gaps = 9/438 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + ++ EK ID ++V+ + D+I A R Y T+ ++R E++ ETG+I + V Sbjct: 5 LYQSIELLSREKGIDPEIVVGAVEDAIALATRKYYKTVENMRGEMDRETGEIRAYVFKTV 64 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE VE+ Q++L+ AR+ P +++GG + GR+A Q AKQVI QKVREA Sbjct: 65 VETPELVEDADNQLALEQARELAPEVEVGGELRFYKDTTPLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ + GEI++ TVKR+E +VI DLG ++ + + E E +RV+ Sbjct: 125 ERDTVFNEYAHRAGEILTATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFSVAERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPALVQSLFQSEVPEIYDGTVSIRAIAREAGERTKIAVVSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSITDLA 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDFNERTQ 360 ++EVIV QLSLAIG++GQNVRLA++L W IDI +E +E Q + Sbjct: 305 EKQLEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMTGGPST 364 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Q + E + L+A G VE LA + E+ + G ++T +I R Y G Sbjct: 365 PIEQVTELGESVMEKLIAAGITTVESLADMTAEELGEVPGIGDKTVEKIAVAVRHYF-GQ 423 Query: 421 DITLQKKIRELGVSEELC 438 +++ V L Sbjct: 424 YEEGEERPVPAPVEPALL 441 >gi|187735458|ref|YP_001877570.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835] gi|187425510|gb|ACD04789.1| NusA antitermination factor [Akkermansia muciniphila ATCC BAA-835] Length = 431 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 154/428 (35%), Positives = 247/428 (57%), Gaps = 16/428 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY---GTMSDIRVEINPETGDISLFR 64 ++ + D EK + R+ +L + + A R + G+++ +R EIN + G + +F Sbjct: 4 DIKALIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVRIFA 63 Query: 65 LLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 LEVV + E + QI L +A D + + ++ + P FGR+AVQ+A+Q ++QK+ Sbjct: 64 DLEVVPDEEYSDKFNQIPLSLAVKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTMLQKL 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 +AE++ Y EFKD+ G++++GT++R E G++ VDLG +GV+ E + E+ GDR+ Sbjct: 124 LDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGKFEGVMTSRERVPNEDYSVGDRM 183 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ +VR E RGP+V+LSR+HP + +LF EV EI + V++ ++R+ G R K+AV Sbjct: 184 RFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTKVAVI 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DPVGACVGMRG+RV+ +V EL +EK+DI+ W+ D TFV AL P ++ +D Sbjct: 244 SHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPREITVD 303 Query: 303 EDVGRIEVIVPKE-QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 E+ +I VIV + LS AIGRRGQN RL S+L GW + + + +++ + Sbjct: 304 EEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAAAEEV 363 Query: 362 FMQ----------AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 Q + + E A LV G D+ L + S+IA G E A +I Sbjct: 364 MRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAAQILD 423 Query: 412 RAREYLEG 419 +AR+ + Sbjct: 424 KARDLISQ 431 >gi|300173097|ref|YP_003772263.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG 18811] gi|299887476|emb|CBL91444.1| N utilization substance protein A [Leuconostoc gasicomitatum LMG 18811] Length = 363 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 138/357 (38%), Positives = 222/357 (62%), Gaps = 4/357 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R++V++ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIEREIVVAALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKN 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV ++ EN +ISL A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDDDFENEDTEISLTDALVINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + ++ + E R GDR+K Sbjct: 124 GREAIYNKFADYQDEIITGEVDRQDARFLYMTLPGNQEAAMAPNDQMPNERYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ +SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMNISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ + + Sbjct: 244 DTDLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVADVIFNPE 303 Query: 305 -VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + K + + Sbjct: 304 NERAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLSKQSPLKAE 360 >gi|229824767|ref|ZP_04450836.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC 49176] gi|229791096|gb|EEP27210.1| hypothetical protein GCWU000182_00116 [Abiotrophia defectiva ATCC 49176] Length = 360 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 145/342 (42%), Positives = 218/342 (63%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL++ D + I ++++L + +S+ A + +G +I+V IN E G +S+ Sbjct: 15 NSKELIEALDQLEKTNDISKEIILEAVENSLLVACKDEFGKADNIKVTINRENGKVSVLS 74 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE VE+ QISL A++ P+ G VV+ + P +FGR+A Q AKQV++QK+RE Sbjct: 75 EKTVVETVEDPITQISLAEAKETFPNAVEGQVVNIVITPKNFGRIAAQKAKQVVVQKIRE 134 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ER + ++ K +I++G V+R GN+ ++LG D ++ E + E DR+K Sbjct: 135 EERKVLFNQYFAKEHDIVTGIVQRYTGGNISINLGKVDALLSESERVKTEKFSSTDRIKL 194 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ +V+ +GP++ +SRTHP + +LF EV EI +G V++K++SR+ GSR K+AV+S+ Sbjct: 195 YVVEVKDTSKGPRITVSRTHPDLVKRLFESEVTEIKDGTVEIKSISREAGSRTKIAVYSN 254 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +D VGACVG+ SRV+AVV ELR EKIDIVVWS D F++NAL PA V D + Sbjct: 255 NPEVDAVGACVGLNRSRVEAVVDELRGEKIDIVVWSEDPRVFIMNALSPARAISVEADPE 314 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +VIV QLSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 315 EKTAKVIVADSQLSLAIGKEGQNARLAARLTGYKIDIKSESQ 356 >gi|313673261|ref|YP_004051372.1| nusa antitermination factor [Calditerrivibrio nitroreducens DSM 19672] gi|312940017|gb|ADR19209.1| NusA antitermination factor [Calditerrivibrio nitroreducens DSM 19672] Length = 428 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 159/425 (37%), Positives = 252/425 (59%), Gaps = 9/425 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L++AD + EK R ++ + + D+I A G + VEI+ E ++ E Sbjct: 4 EILKVADEIVREKGFSRKIISNALRDAIYTALVKKLGKYGEPVVEIDLEKNIFNISVPKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+V++ +I L A D +G V+ P+ + GR + K + +K+R+AE+ Sbjct: 64 VVEDVDSVWHEILLDDALKIDKDAYLGKVIMVPVTIEEIGRQLATTVKTRLFEKLRDAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y EF+ KVGEII+G V + + V V +G ++ ++ + E I + GD +++ + Sbjct: 124 DIVYSEFQGKVGEIITGIVLKSDKEGVTVSIGKTEAILPKKEMIPGDYYTRGDYIRALLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +++ + PQ++LSRTHPQF+ KLF E+PE+++G+V+VK+V+R+PG RAK+AV+S+ S+ Sbjct: 184 EIKLIKGWPQLVLSRTHPQFLKKLFESEIPEVFDGLVEVKSVAREPGDRAKVAVYSTSSN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGAC+G++G R+ A+ EL+ EKID++ WSPD FV ++ PA V + ED Sbjct: 244 IDPVGACIGLKGVRINAISNELKGEKIDVIQWSPDPVKFVCASISPAEVLLTNIFEDEST 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-- 365 IEV+VP +QLSLAIG+RGQNV+LAS LTGW +DI+ E E R++ E+ Q + Sbjct: 304 IEVVVPDDQLSLAIGKRGQNVKLASILTGWKLDILKESEYKELRKQRLIEQEQEMKEFYM 363 Query: 366 -------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 + + + LVA G D+E+LA + I+ I E A+ I A +YL Sbjct: 364 IYSLDNLTVLTDEMISKLVAAGVTDLEKLADTDVDRISEILNISHEDAINILNAALDYLA 423 Query: 419 GIDIT 423 + Sbjct: 424 SVLEE 428 >gi|289522943|ref|ZP_06439797.1| transcription termination factor NusA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503486|gb|EFD24650.1| transcription termination factor NusA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 375 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 144/368 (39%), Positives = 230/368 (62%), Gaps = 5/368 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + EK + +V++S + ++ A + GT S++ VE++ + G I ++ + E Sbjct: 9 DFMRALKQIETEKGLPLEVIISSIEAALVSAYKKYKGTNSNVEVELDSDNGIIKIYEVKE 68 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+ V N +IS++ A+ G ++ + P DFGR+AVQ+A+QVI Q++++AE Sbjct: 69 VVDTVRNPAFEISVEEAKSMGLDDAKEGEMIKVEVSPRDFGRIAVQTARQVITQRLKDAE 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R Y +F KVGEI++G V R E G +V +G D ++ R+E I E+ RPGDR K Y Sbjct: 129 RQIIYNDFSGKVGEIVTGVVFRDEGGQALVRIGDKIDAMLPREERIPTESYRPGDRKKFY 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ +GP+++LSR+HP + L +EVPEI G++ +K ++R+ G R+K+AV + D Sbjct: 189 VLDVRKTSKGPRIVLSRSHPGLLKSLLELEVPEIKEGVIDIKNIAREAGVRSKVAVTTLD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV--VLDE 303 ++DPVGAC+G +G+R++A+ EL E+ID+++WS D ++ NAL PA V K+ LDE Sbjct: 249 PNVDPVGACIGTKGNRIKAISDELAGERIDVIIWSNDPIAYIKNALSPAKVVKIEPRLDE 308 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D + V V +QLSLAIG+ GQNVRLA++LTGW IDI E D + +D E Sbjct: 309 D-KAVNVYVRPDQLSLAIGKGGQNVRLAAKLTGWKIDINVMEPDRLPTLQDLFEDIIKGE 367 Query: 364 QAINVDEI 371 ++ Sbjct: 368 LPKEWEKE 375 >gi|325479444|gb|EGC82540.1| transcription termination factor NusA [Anaerococcus prevotii ACS-065-V-Col13] Length = 425 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 141/352 (40%), Positives = 228/352 (64%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + EK +D+ +L + ++ K+ + Y ++ V I+ E+G I +F L Sbjct: 2 NNDFMLALDELCKEKGLDKATILDALKKALIKSYQKNYDNQENVDVIIDEESGKIEVFAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +IS+K A+ + + D+G VV L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KNVVEEVEDSISEISIKDAKKVNSTYDLGDVVRIELTPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ ++ E+I+G ++R + N+ V+L +GV+ E + EN P +R+K Sbjct: 122 QRDSLYGEYIERSNEMITGLIQRADNYNLYVNLDKIEGVVPLKEQVPTENYAPNERMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR+ + +LF +EVPEI G++++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSSKDPQIILSRSSQDLITRLFELEVPEITEGVIEIYSIAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + V+++E Sbjct: 242 ETIDAVGACIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIDVIVNEKN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V+V +QLSLAIG+ GQN RLA++LTGW IDI ++EE Q D +E Sbjct: 302 KQSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSKEEFDTLSQDDIDE 353 >gi|294055327|ref|YP_003548985.1| transcription termination factor NusA [Coraliomargarita akajimensis DSM 45221] gi|293614660|gb|ADE54815.1| transcription termination factor NusA [Coraliomargarita akajimensis DSM 45221] Length = 416 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 153/414 (36%), Positives = 245/414 (59%), Gaps = 1/414 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + + + EK IDR +++ ++ +I AA+ DIRVEINP TG + + LE Sbjct: 4 EILSVLEYMEKEKGIDRADMITAISAAIASAAQKGVSAGQDIRVEINPRTGALKAWSRLE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+ V + +I ++ AR DP +IG V+ + P GR+A Q+A+Q I+Q++R+ E+ Sbjct: 64 VVDSVSDQALEIHIEKARQIDPDAEIGQVIEKEMDPAYLGRIAAQTARQAIMQRIRQFEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 DR Y +FKD VG+I++GTV+R E G++I+DLG ++ ++ E + E+ GD ++ + Sbjct: 124 DRIYDDFKDTVGDIVTGTVRRRERGDLIIDLGKAEAILPPRERVPGEDYSIGDSIRCLLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + + RGP ++LSR++ F+ +LF +EV EI +G V ++A++R+ G R K+AV S+D Sbjct: 184 KIEQTNRGPDIILSRSNLNFVRRLFELEVTEIADGTVTIEAMAREAGYRTKIAVHSADPK 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVGACVG RG+RV+ +V EL EKIDI+ D + ALRPA+ V L++ R Sbjct: 244 VDPVGACVGARGARVKTIVRELGGEKIDIIRHFTDPVQMLEEALRPAVPKNVRLNDVERR 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + V ++ LS+AIGRRG N +L S+L GW +DI EE+++I + + Q Sbjct: 304 MHFEVAEDDLSIAIGRRGFNAKLTSRLLGWKLDIGKEEKEAIGFDEKIAKAIQGITVIPG 363 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ IA LV G E V +++ GF A +I + Y + Sbjct: 364 IEPAIAQRLVGIGLISPEAFEGVAANDLVD-AGFTAAEADDIISKVAAYAQSNA 416 >gi|326692688|ref|ZP_08229693.1| transcription elongation factor NusA [Leuconostoc argentinum KCTC 3773] Length = 365 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 140/362 (38%), Positives = 221/362 (61%), Gaps = 4/362 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ E+ I+R VV+ + D+++ A + Y ++ + + G++++ ++ Sbjct: 4 ELVDALDALEAERGIERAVVIEALEDALRAAYKKQYNAEQNVEAVFDTKKGNVAIKQVKV 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ EN +I L+ A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDEDFENEDTEIPLEDALAINRAYEPGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R+ Y +F D EII+G V R + + + L GN + + + + E+ R GDR+K Sbjct: 124 SREAIYNKFADYQDEIITGEVDRQDTRFLYLTLPGNQEAAMAPADQMPNEHYRMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQ+ +SRT P + +LF EVPE+Y+G V++ ++SR+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQIFVSRTAPDLVKRLFEQEVPEVYDGTVEIMSISREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ VT V+ D + Sbjct: 244 DADLDPVGAMVGQRGARVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPE 303 Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + + + + Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAANSLVAEAPVVVEDET 363 Query: 364 QA 365 Sbjct: 364 NE 365 >gi|227486447|ref|ZP_03916763.1| transcription termination factor NusA [Anaerococcus lactolyticus ATCC 51172] gi|227235628|gb|EEI85643.1| transcription termination factor NusA [Anaerococcus lactolyticus ATCC 51172] Length = 407 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 143/402 (35%), Positives = 248/402 (61%), Gaps = 5/402 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + +K+++++V+L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKDFMLALDELCKDKNVEKEVILDALEKALVKSYQKNYDNQENVDVTIDHETGEIGVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV++VE+ QI+LK A+D D S+ +G L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KEVVDKVEDPINQINLKDAKDLDASLAVGDTARIKLVPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +R+ + ++ D+ E+I+G ++RV+ NV V+L +G++ E + E+ P +R+K Sbjct: 122 QRESLFGDYLDRENELITGLIQRVDKYNVYVNLDRIEGIVPLKEQVPTESYIPNERMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR+ + +LF +EVPEI +G++++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSGKDPQIVLSRSSENLVTRLFELEVPEITDGVIEIYSIAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID VGAC+G +G+RV ++V L+ EKIDI+ +S D +F+ NAL PA + +V ++E Sbjct: 242 ETIDAVGACIGYKGARVNSIVDSLQGEKIDIINYSKDIESFISNALSPADIIEVYVNERN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V +QLSLAIG+ GQN RLA++LTGW IDI S ++ + + Sbjct: 302 KQSLVVVEDDQLSLAIGKEGQNARLAARLTGWKIDI-----KSKLEFDSLSQEEIDEILS 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV 407 IN +E+ + + +LA S+ E DE+ Sbjct: 357 INEEEVSDEKSTDDKDLEAYDLAEENASDDKDEEISDEDKEE 398 >gi|182417570|ref|ZP_02948895.1| transcription termination factor NusA [Clostridium butyricum 5521] gi|237667179|ref|ZP_04527163.1| transcription termination factor NusA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378583|gb|EDT76111.1| transcription termination factor NusA [Clostridium butyricum 5521] gi|237655527|gb|EEP53083.1| transcription termination factor NusA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 384 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 147/384 (38%), Positives = 236/384 (61%), Gaps = 8/384 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDIS 61 E + + EK I D++ + + D++ A + Y +++V I+ ETG+I Sbjct: 2 NEEFVGALRELVKEKGICEDLIFTTIQDALVAAYKKNYANVNTNAQNVKVNIDRETGEIR 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VV+EV + +IS++ A+ P ++ +V + P +FGRVA Q AKQV+ Q+ Sbjct: 62 VYAQKVVVDEVYDDVTEISIEEAKVVSPKYEVDDIVDLEVTPKNFGRVAAQLAKQVVTQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++EAER+ Y E+K++ +II+GT+ R + G V V+LG +GVI +E I E + ++ Sbjct: 122 IKEAERNIIYDEYKEQEFDIITGTILRKDKGMVFVNLGKLEGVIGPNEQIPGEEYKFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI +V+ +GPQ+ +SRTHP + +LF +EVPEI+ G+V+VK++SR+ GSR+K+AV Sbjct: 182 LKLYIVEVKNGSKGPQIHVSRTHPGLVKRLFELEVPEIFEGVVEVKSISREAGSRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D +D +GACVG +G RVQ +V EL++EKIDI+ WS D A F+ N+L PA V V + Sbjct: 242 YSNDEEVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSKDPAEFIANSLSPAKVLSVEV 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 DE+ +V+V QLSLAIG+ GQNVRLA++LT W IDI ++ + E + Sbjct: 302 DEENKTAKVVVDDNQLSLAIGKEGQNVRLAAKLTNWKIDIKSKSQKDALDA----EEEKL 357 Query: 362 FMQAINVDEIIAHLLVAEGFADVE 385 + +D L + ++ Sbjct: 358 VNTEVEIDNEDTTDLSDLDISTID 381 >gi|325661695|ref|ZP_08150318.1| transcription termination factor NusA [Lachnospiraceae bacterium 4_1_37FAA] gi|331084712|ref|ZP_08333800.1| transcription termination factor NusA [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471948|gb|EGC75163.1| transcription termination factor NusA [Lachnospiraceae bacterium 4_1_37FAA] gi|330410806|gb|EGG90228.1| transcription termination factor NusA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 377 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 150/376 (39%), Positives = 232/376 (61%), Gaps = 1/376 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ELL+ + EK I ++ +L + +S+ A ++ +G +I++ +N ET D S+F Sbjct: 2 NTELLEALTILEEEKDISKETMLDAIENSLMNACKNHFGKADNIKIIMNRETCDYSVFAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEVE+ +ISL A+ D ++G +V P+ +FGR+A Q+AK +I+QK+RE Sbjct: 62 KVVVEEVEDEVMEISLADAKMIDSKFELGDIVQIPVESKEFGRIATQNAKNLILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y ++ +K +I++G V+R NV ++LG +D ++ +E + E +P +R+K Y Sbjct: 122 ERKVVYDQYFEKEKDIVTGIVQRYVGKNVSINLGKADAMLTENEQVKGEVFKPTERIKLY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP++L+SRTHP+ + +LF EV E+ +G V++K++SR+ GSR K+AV+S+D Sbjct: 182 VVEVKNTTKGPKILVSRTHPELVKRLFESEVAEVKDGTVEIKSISREAGSRTKIAVWSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVGM G+RV A+V ELR EKIDI+ WS + A + NAL PA V V+ D D Sbjct: 242 PDVDPVGACVGMNGARVNAIVNELRGEKIDIINWSENPAILIENALSPAKVISVMADPDE 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE-DSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+ GQN RLA++LTG+ IDI +E + + Sbjct: 302 KTASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIEAGDLPENYMDMAMEAA 361 Query: 365 AINVDEIIAHLLVAEG 380 ++ E L E Sbjct: 362 EVDEPEQTEDYLADEE 377 >gi|169824466|ref|YP_001692077.1| transcription terminator [Finegoldia magna ATCC 29328] gi|167831271|dbj|BAG08187.1| transcription terminator [Finegoldia magna ATCC 29328] Length = 422 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 144/348 (41%), Positives = 219/348 (62%), Gaps = 6/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59 + ++ D + K I R+VV + ++ K+ + S + V IN + G Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++I Sbjct: 62 VNLYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPN 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+ Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +DE VIV ++QLSLAIG+ GQN RLA++LT W IDI + Sbjct: 302 FIDEAQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLNQY 349 >gi|227872001|ref|ZP_03990386.1| transcription elongation factor NusA [Oribacterium sinus F0268] gi|227842144|gb|EEJ52389.1| transcription elongation factor NusA [Oribacterium sinus F0268] Length = 390 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 142/364 (39%), Positives = 214/364 (58%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL D + EK I + ++ + S+Q A ++ +G+ ++ V +NP+T S+ Sbjct: 2 NEELRLALDMLEKEKKISKQALIEAIELSLQTACKNHFGSADNVHVSMNPDTAVFSVLAD 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVE+V + + +ISL+ A + DPS +G VV P+ F R+A Q+AK VI+QK+RE Sbjct: 62 KTVVEKVGDKSTEISLEEAHEMDPSYTLGDVVQVPIDSKSFSRIAAQNAKGVIVQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER + E+ +I + V++ +I++LG DG + E I ENL PG R K Y Sbjct: 122 ERKNLFEEYYAMSKKIFTALVEKNTGRALIMNLGKVDGYLAEAEQIPGENLTPGQRAKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +V+ +GP+++LSRTHP+ + KLF EV E+ GIV++K+++R+ GSR K+AV S++ Sbjct: 182 VVEVKDSPKGPKLMLSRTHPELVRKLFFEEVSELREGIVEIKSIAREAGSRTKMAVISNE 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGACVG+ G+RV +V ELR EKIDI+ + + A + N+L PA V V+ D D Sbjct: 242 EDVDAVGACVGLNGNRVNTIVEELRGEKIDIINYDENPAYLIENSLSPAKVIAVIADPDN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+ GQN RLA++LT + IDI +E + D Sbjct: 302 KEALVIVPDNQLSLAIGKEGQNARLAAKLTNYKIDIKSESQAQEQGIFDEMGIDYHGESL 361 Query: 366 INVD 369 D Sbjct: 362 EEED 365 >gi|261367202|ref|ZP_05980085.1| transcription termination factor NusA [Subdoligranulum variabile DSM 15176] gi|282570800|gb|EFB76335.1| transcription termination factor NusA [Subdoligranulum variabile DSM 15176] Length = 357 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 146/352 (41%), Positives = 210/352 (59%), Gaps = 6/352 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59 M +AN E A+ E+ + D ++ + +I A + Y ++ V+I+PE G Sbjct: 1 MATANN-EFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGA 59 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 L ++VEEVEN Q+SL+ A+ S +G + L +FGR+A Q+AK VI Sbjct: 60 FRASLLRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIR 119 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTV--KRVEYGNVIVDLGNS-DGVIRRDETISRENL 176 Q +RE ER+ Q E + + E+I+ TV E GNV++DLG V+ R+E + E Sbjct: 120 QGLREGERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETF 179 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 G+ V+ Y+ DV RGP+V +SRTHP + ++F +EVPEIY+G V++KA++R+ G+R Sbjct: 180 HEGETVQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGAR 239 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 KLAV+S + +DPVGAC+G RG+RV+ +V EL EKID++ WS D F+ AL PA V Sbjct: 240 TKLAVWSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKV 299 Query: 297 TKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 KV L + V VP QLSLAIG +GQNVRL + LTG+ IDI E Sbjct: 300 VKVELLPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDIRPESGY 351 >gi|303233744|ref|ZP_07320398.1| transcription termination factor NusA [Finegoldia magna BVS033A4] gi|302495178|gb|EFL54930.1| transcription termination factor NusA [Finegoldia magna BVS033A4] Length = 422 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 155/422 (36%), Positives = 237/422 (56%), Gaps = 8/422 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG------TMSDIRVEINPETGD 59 + ++ D + K I R+VV + ++ K+ + S + V IN + G Sbjct: 2 NNDFIKALDELEKSKKIPREVVFDALEKALIKSYEKNFDYQDHENEESSVEVNINRDNGK 61 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++L+ + VVE VE+ +ISL+ A+ D+G + + P +FGR+A Q+A+ ++I Sbjct: 62 VNLYAIKTVVESVEDKNTEISLEEAKAIKHKYDLGDKIKIEITPKNFGRIAAQTARNIVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK+++AERD Y EF D+ EII+GTV+RVE G V +DLG +G+I E I E P Sbjct: 122 QKLKDAERDNIYNEFIDREKEIITGTVQRVERGIVYIDLGRVEGIIPVSEQIKTEEYIPN 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R+K +I +V+ +G Q++LSRT + +LF +EVPEI +G V++ +V+R+PGSR K+ Sbjct: 182 KRLKLFIKEVKNTTKGAQIILSRTDNSLIKRLFELEVPEINDGTVEIFSVAREPGSRTKI 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AVFS+D ++DPVG+CVG G+RV+++V EL EK+DIV+WS D TF+ N+L P+ V Sbjct: 242 AVFSNDENVDPVGSCVGFSGTRVKSIVDELNGEKLDIVIWSKDIKTFISNSLSPSEVIAT 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +DE VIV ++QLSLAIG+ GQN RLA++LT W IDI D + Sbjct: 302 FIDEGQKICRVIVSEDQLSLAIGKEGQNARLAAKLTNWKIDIKGLN--QYLEAYDDGILS 359 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 F + E + AE + E S+ E D + + E E Sbjct: 360 VEFDGEADFLEANGIEVRAEDKDKIFEKIKYHESDDKEEEMDDIKDDNSLVSDNNEIAED 419 Query: 420 ID 421 + Sbjct: 420 SE 421 >gi|254669623|emb|CBA03666.1| N utilization substance protein A [Neisseria meningitidis alpha153] Length = 358 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 164/379 (43%), Positives = 244/379 (64%), Gaps = 25/379 (6%) Query: 142 ISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR--GPQ 197 +SGTVKRVE +IV++ G D +I RD+ I REN R GDR+++ V Q Sbjct: 1 MSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQ 60 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 V+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK+AV ++D IDP G C+G+ Sbjct: 61 VILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGV 120 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 RGSRV AV EL E+ID+V+WSP+ A FV++AL PA V+++V+DED ++VIV ++QL Sbjct: 121 RGSRVNAVSNELSGERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQL 180 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLV 377 +LAIGR GQNVRLAS LTGW ++I+T E + + FM +NVDE A +LV Sbjct: 181 ALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVDEETADVLV 240 Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437 EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ E VS+++ Sbjct: 241 QEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGE--VSDDM 298 Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 ++ GID+ + +L E GI T +DLA +VD+L+ + G ++ Sbjct: 299 RNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT-----------------GVNEET 341 Query: 498 VESMIIHARYKMGWIEKEK 516 +++I+ AR W ++K Sbjct: 342 AKAVILTAREH--WFTEDK 358 >gi|154497680|ref|ZP_02036058.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC 29799] gi|150273178|gb|EDN00323.1| hypothetical protein BACCAP_01656 [Bacteroides capillosus ATCC 29799] Length = 400 Score = 315 bits (808), Expect = 9e-84, Method: Composition-based stats. Identities = 150/385 (38%), Positives = 222/385 (57%), Gaps = 7/385 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 + E + EK I + +L + ++ A + + G +I VE + E G++ ++ Sbjct: 15 DGKEFFAAIGMIEQEKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMY 74 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +VVE V+N ++SL AR R P I +G VV + DFGR+A Q+A+QVIIQ +R Sbjct: 75 VKKDVVETVDNPYTEVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMR 134 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLR 177 EAER Y EF K E+++G V R++ + L +D + E + E R Sbjct: 135 EAERGMIYDEFSSKEHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFR 194 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+K Y+ +VRR +GPQVL+SRTHP + +LF +EVPEI++G V+VK+++R+ GSR Sbjct: 195 EGDRLKVYVVEVRRSTKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRT 254 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 KLAV+S+D ++DP+GACVG RG RV +V EL+ EK+DI+ +S D A +V AL PA V Sbjct: 255 KLAVWSADPNVDPIGACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVI 314 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V +D V+VP +QLSLAIG+ GQN RLA++LTG+ IDI + + +E Sbjct: 315 SVTTLDDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGFKIDIKPASNPGGDEADELDE 374 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFA 382 + + A E Sbjct: 375 VLVDDVADEADETADAAETADESLD 399 >gi|73748752|ref|YP_307991.1| transcription elongation factor NusA [Dehalococcoides sp. CBDB1] gi|147669518|ref|YP_001214336.1| transcription elongation factor NusA [Dehalococcoides sp. BAV1] gi|289432778|ref|YP_003462651.1| transcription termination factor NusA [Dehalococcoides sp. GT] gi|73660468|emb|CAI83075.1| N utilization substance protein A [Dehalococcoides sp. CBDB1] gi|146270466|gb|ABQ17458.1| NusA antitermination factor [Dehalococcoides sp. BAV1] gi|288946498|gb|ADC74195.1| transcription termination factor NusA [Dehalococcoides sp. GT] Length = 491 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 147/416 (35%), Positives = 243/416 (58%), Gaps = 4/416 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + + Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDQLTGKVKVMA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VVE+V + ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKQVVEKVIDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ K G+ + G V+R+E + VD+G + ++ +E E R G R+K Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPANEQAYGERYRAGQRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + Sbjct: 182 YVVDVAKTAKGPSVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 IDPVG CVG+RG R+Q +V+EL EKID+V WS + A+F+ N+L PA VTKV+L+E Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWSSEIASFIANSLSPAQVTKVILNEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R + + + + Sbjct: 302 ERSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEDVERAEVAARQQEEISK 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + ++++ V A V + V + ++ + E A E +A E Sbjct: 362 SKITEKVVEKQPV---IAAVSKTETVPVEKVLPADTIIEPVAKETPAKAESVPEEQ 414 >gi|291287256|ref|YP_003504072.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809] gi|290884416|gb|ADD68116.1| NusA antitermination factor [Denitrovibrio acetiphilus DSM 12809] Length = 460 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 158/422 (37%), Positives = 256/422 (60%), Gaps = 9/422 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL ++ D + EK I R+++ + +SI A G + + V ++ + G I + E Sbjct: 4 ELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILLPKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E V++ +I + A + + +G V+ P + GR A AKQ + +K+R+AE+ Sbjct: 64 VCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRDAEK 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +F+D++GEI++G V + + N+I+++G ++ V+ + E I + GD V++ + Sbjct: 124 QVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGKTEAVLPKREMIGGDFFNRGDYVRALLL 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 D+R + PQ++LSRTHP+FM KLF E+PE++ GI+ VKAVSR+PG RAK+AV++++SS Sbjct: 184 DIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYTTNSS 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVGAC+G++G R+ A+ ELR EKID++ WSPDS FV NA+ PA V + ED Sbjct: 244 IDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFEDEET 303 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-- 365 IE++VP +QLSLAIG++GQNVRLA++LT W +D++ E E + R++ ++ Q + Sbjct: 304 IEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLKEFYE 363 Query: 366 -------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D H L+ G+ D+E+L+ E+A +EE AV + A +YL Sbjct: 364 MYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEVAQELECEEEKAVSLINMALDYLA 423 Query: 419 GI 420 Sbjct: 424 NK 425 >gi|237734616|ref|ZP_04565097.1| transcription termination-antitermination factor [Mollicutes bacterium D7] gi|229382436|gb|EEO32527.1| transcription termination-antitermination factor [Coprobacillus sp. D7] Length = 443 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 146/334 (43%), Positives = 218/334 (65%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67 + + + EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF L Sbjct: 6 FMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFELRT 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+++++ ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE E+ Sbjct: 66 VVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRETEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +II+G V RVE IV++G + + ++ I E L G +K Y+ Sbjct: 126 ETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKVYVS 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV R +G +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S+ + Sbjct: 186 DVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTSNEN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+ Sbjct: 246 IDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEENHS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP +QLSLAIG+RGQN RLA +LTGW IDI Sbjct: 306 ALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDI 339 >gi|167756908|ref|ZP_02429035.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402] gi|167703083|gb|EDS17662.1| hypothetical protein CLORAM_02457 [Clostridium ramosum DSM 1402] Length = 448 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 146/334 (43%), Positives = 218/334 (65%), Gaps = 1/334 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67 + + + EK I++DV L ++ +SI KA + Y +++RVEIN +TG LF L Sbjct: 6 FMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFELRT 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+++++ ++SL+ A+ +P+ IG VV GR+A KQ+ QK+RE E+ Sbjct: 66 VVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRETEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +II+G V RVE IV++G + + ++ I E L G +K Y+ Sbjct: 126 ETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLASNQQIPGEKLNEGQHLKVYVS 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV R +G +++SRT P F+ +LF +EVPE+Y+G V++KAVSR+PG R+K+AV++S+ + Sbjct: 186 DVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYTSNEN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E+ Sbjct: 246 IDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINEENHS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+VP +QLSLAIG+RGQN RLA +LTGW IDI Sbjct: 306 ALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDI 339 >gi|270308254|ref|YP_003330312.1| transcription elongation factor [Dehalococcoides sp. VS] gi|270154146|gb|ACZ61984.1| transcription elongation factor [Dehalococcoides sp. VS] Length = 487 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 227/368 (61%), Gaps = 1/368 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I V+I+P TG + + Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKIDPLTGKVKVMA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VVE+V + ++ L A+ + IG ++ P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKQVVEKVIDSRQEMRLLEAKRQKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ K G+ + G V+R+E + VD+G + ++ E E R G R+K Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + Sbjct: 182 YVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 IDPVG CVG+RG R+Q +V+EL EKID+V W + ATF+ N+L PA VTKV+L+E Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDNEIATFIANSLSPAQVTKVILNEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ + ++ Sbjct: 302 EKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEEVARKQAEHIK 361 Query: 365 AINVDEII 372 V++ Sbjct: 362 PEAVEKQP 369 >gi|295426316|ref|ZP_06818975.1| transcription termination factor NusA [Lactobacillus amylolyticus DSM 11664] gi|295063989|gb|EFG54938.1| transcription termination factor NusA [Lactobacillus amylolyticus DSM 11664] Length = 401 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 137/402 (34%), Positives = 224/402 (55%), Gaps = 8/402 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++V++ + ++ A + Y ++ V+ + G+ + + Sbjct: 4 EMLEAFATLEEKKGIKQEVIVDAIKAALVAAYKKNYNQAQNVEVDFDERKGNFKVMAVKT 63 Query: 68 VVEEVENYTC--QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++ + ++SL A + + ++G + + P +FGR+A Q+AKQVI+Q++REA Sbjct: 64 VVDDDQLQDDRLEVSLSDALAINRAYEVGDEIRFEVTPKNFGRIAAQTAKQVIMQRLREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+ E+ E+I+GTV+R + V V +GN + V+ R + + E P D+++ Sbjct: 124 ERNHIVDEYSQYEDELITGTVERRDNRFVYVKIGNVEAVMPRSDQMPNETYNPQDKIRVL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +G Q+++SRT P + +LF EVPEIY+G V++ +++R+ G R K+AV S D Sbjct: 184 VTRVGSDSKGAQIVVSRTAPDLVKRLFEQEVPEIYDGTVEIVSIAREAGDRTKIAVKSID 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DE 303 +IDPVG CVG RG+RVQ VV EL E IDIV + D + ++ NAL PA V V D+ Sbjct: 244 PNIDPVGTCVGQRGARVQNVVNELGGENIDIVRYEDDPSDYIANALSPAEVIAVQFGDDD 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + VIVP QLSLAIG++GQ+VRLA++LTG+ I+I E E + Sbjct: 304 EEKSALVIVPDYQLSLAIGKKGQSVRLAARLTGYKINIRPESEVEFVDEDKDENSDTNDN 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 N E +D E A SE A+ + +D + Sbjct: 364 DNANNTAAKNE----EASSDSAEEAISDESEDAADDTYDTKE 401 >gi|322436508|ref|YP_004218720.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321164235|gb|ADW69940.1| NusA antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 534 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 170/425 (40%), Positives = 249/425 (58%), Gaps = 8/425 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q +A++ EK I+ VV+S + D+I A R Y T ++R E++ +TG+I + V Sbjct: 5 LYQSIEALSREKGIEPAVVVSAIEDAIALATRKYYKTQENMRAEMDKDTGEIRAYVFKTV 64 Query: 69 VEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE E + Q++L+ AR P +++GG + GR+A Q AKQVI QKVREA Sbjct: 65 VETPEEIVDEINQLALEPARALAPEVEVGGELRFYKDTTPLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ + GE+++ TVKR+E +VI DLG ++ + + E E G+RV+ Sbjct: 125 ERDTVFNEYNHRAGEVLNATVKRLEPMDVIFDLGKAEARMPKREQSRLEQFAVGERVRVV 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D Sbjct: 185 LLRVDRAAKGPQVIVSRAAPALVQNLFQSEVPEIYDGTVSIRAIAREAGERTKIAVMSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V++V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEYSEEITTFAEKALQPAKVSRVSITDLA 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +IEVIV QLSLAIG++GQNVRLA++L W IDI +EEE ++ + Sbjct: 305 EKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLQWKIDIKSEEEKRQEVEQQMQAMSGGPTT 364 Query: 365 AI----NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 I + E I L+A G VE +A + E+ I G E+T +I R Y Sbjct: 365 PIEQVTELGEQILEKLIAAGITTVEAVADMTAEELEQIPGIGEKTIEKISVAVRHYFGQY 424 Query: 421 DITLQ 425 + + Sbjct: 425 EEGEE 429 >gi|297565903|ref|YP_003684875.1| transcription termination factor NusA [Meiothermus silvanus DSM 9946] gi|296850352|gb|ADH63367.1| transcription termination factor NusA [Meiothermus silvanus DSM 9946] Length = 393 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 142/345 (41%), Positives = 215/345 (62%), Gaps = 10/345 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPE 56 + ++ VA E+ + D +++ +S++ A G + V ++P Sbjct: 2 NKDFVEALQQVALERGVTADELITAFEESLRLAYLRQKGYKPKDVEEGLGPVVEVHLDPA 61 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 G + + + VVE+VE+ +ISL A DP + +G + P+ P +F R+AVQ AKQ Sbjct: 62 GGGLEVLEIKTVVEKVEDPDKEISLADALAYDPDVQLGEEMEFPVDPEEFSRIAVQIAKQ 121 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISREN 175 V+ Q+++EAER+R + E+KDK GE+I+G V RV+ GNV VDLG + ++ E I E Sbjct: 122 VLTQRLKEAERNRVHTEYKDKEGEVITGQVTRVDNRGNVYVDLGRGEALMPPKEQIPSER 181 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 PG RVK Y+ V+R +GP +++SR + + L EVPEI GIV++KAV+R+PGS Sbjct: 182 YHPGQRVKVYLKQVQRSAKGPSLIVSRASEELLKYLLRQEVPEINEGIVEIKAVAREPGS 241 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K+AV S + ++DP+GAC+G +G R+QAV EL E++DI+ WS + F+ NAL PA Sbjct: 242 RSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGRERVDIIQWSANPREFIRNALSPAQ 301 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 V + D + R +V+V K+Q SLAIG+ GQNVRLAS+LTG+ ID Sbjct: 302 VGNIETDNETKRAKVVVSKDQHSLAIGKAGQNVRLASKLTGYEID 346 >gi|298242762|ref|ZP_06966569.1| transcription termination factor NusA [Ktedonobacter racemifer DSM 44963] gi|297555816|gb|EFH89680.1| transcription termination factor NusA [Ktedonobacter racemifer DSM 44963] Length = 374 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 143/344 (41%), Positives = 217/344 (63%), Gaps = 8/344 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 R E + EK + R+VV+ +A+++ A R +G ++R+E++ + G++ ++ Sbjct: 2 RSEFQAAIAQLIAEKGLPREVVMETVANALLAAYRKSFGGGENVRIEVD-KNGEVHVWAS 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV +V + +ISL A+ P+ +G ++ F R+ Q+AKQVI+Q++REA Sbjct: 61 KRVVAQVNDSNEEISLAEAQRLVPNAALGQLLDVD-SSFIFSRIPTQTAKQVILQRIREA 119 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD-----LGNSDGVIRRDETISRENLRPGD 180 E + Y + K VGEI GT+ R E +VD + +G++ ETI E+ R Sbjct: 120 EHEHLYEQVKGWVGEIRLGTLIREEQRGWVVDFDLDKVDKVEGLMPISETIPGEHYRMKQ 179 Query: 181 RVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R++ YIYDVRR + R Q+L+SRTH + +LF EVPEIY+G V++KA++R+PGSRAK+ Sbjct: 180 RLRLYIYDVRRIQGRMLQILVSRTHRDLVRRLFENEVPEIYDGSVEIKAITREPGSRAKV 239 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV++ +DP+G+CVG+RG R+ +V EL DEKIDI+ WSPD+A+FV NAL P KV Sbjct: 240 AVYARQEGLDPIGSCVGVRGQRISNIVRELNDEKIDIIQWSPDTASFVANALSPVKPLKV 299 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 L + V VP+ QLSLAIG+ GQN RLA++LTGW +D++ Sbjct: 300 ELRDSDHTAIVTVPERQLSLAIGKDGQNARLAAKLTGWRVDVVK 343 >gi|168180700|ref|ZP_02615364.1| N utilization substance protein A [Clostridium botulinum NCTC 2916] gi|182668525|gb|EDT80504.1| N utilization substance protein A [Clostridium botulinum NCTC 2916] Length = 457 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 158/449 (35%), Positives = 270/449 (60%), Gaps = 6/449 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E Sbjct: 302 VDEENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEATLNLSEAKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + ++ + + + E I E S+ ++E E+ +A E + Sbjct: 362 EKILENKKEDKEDKIDLHAEMDSIVEDTKENIKEEISVSHDNQEVDSEL-EKAMEEVFNT 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKV 449 + K +++ + E+ P ID++ + Sbjct: 421 EDKENKLEKDMNLFEDDNEKPSIDTEKAI 449 >gi|148380376|ref|YP_001254917.1| N utilization substance protein A [Clostridium botulinum A str. ATCC 3502] gi|153933708|ref|YP_001384596.1| transcription elongation factor NusA [Clostridium botulinum A str. ATCC 19397] gi|153936194|ref|YP_001388112.1| transcription elongation factor NusA [Clostridium botulinum A str. Hall] gi|170761276|ref|YP_001787732.1| transcription elongation factor NusA [Clostridium botulinum A3 str. Loch Maree] gi|226949774|ref|YP_002804865.1| N utilization substance protein A [Clostridium botulinum A2 str. Kyoto] gi|148289860|emb|CAL83968.1| putative transcription elongation protein NusA [Clostridium botulinum A str. ATCC 3502] gi|152929752|gb|ABS35252.1| transcription termination factor NusA [Clostridium botulinum A str. ATCC 19397] gi|152932108|gb|ABS37607.1| N utilization substance protein A [Clostridium botulinum A str. Hall] gi|169408265|gb|ACA56676.1| N utilization substance protein A [Clostridium botulinum A3 str. Loch Maree] gi|226843922|gb|ACO86588.1| N utilization substance protein A [Clostridium botulinum A2 str. Kyoto] gi|322806687|emb|CBZ04256.1| transcription termination protein NusA [Clostridium botulinum H04402 065] Length = 457 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 159/449 (35%), Positives = 271/449 (60%), Gaps = 6/449 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDESVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E Sbjct: 302 VDEENKAARAVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEATLNLSEAKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + ++ + + E + E I E S+ ++E E+ +A E + Sbjct: 362 EKILENKKEDKEDKIDLHEEMDSIVEDTKENIKEEISVSHDNQEVDSEL-EKAMEEVFNT 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKV 449 + K +++ + E+ P ID++ + Sbjct: 421 EDKENKLEKDMNLFEDDNEKPSIDTEKAI 449 >gi|282889767|ref|ZP_06298306.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500341|gb|EFB42621.1| hypothetical protein pah_c004o139 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 424 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 151/420 (35%), Positives = 244/420 (58%), Gaps = 10/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I + + EK I R++V++ + +S++ AA+ S++ V INP++G+I ++ Sbjct: 2 NKDLIAIFEYLEREKGIKRNIVVAAIEESLRAAAKKSISGASNVTVTINPKSGNIDVYCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VEEVE +ISL+ AR+ DP +IG + P DFGR+A Q A+Q+I QK+R A Sbjct: 62 KEIVEEVEVEAQEISLQDAREIDPDCEIGQFIDVVATPKDFGRIAAQKARQIITQKLRNA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + E+ISGT+KR NV++DLG + ++ E G++V + Sbjct: 122 ERDVIYEEYRHRTNELISGTIKRFVRGSNVVIDLGKVEAIMPTKHYPKTEKYHVGEKVLA 181 Query: 185 YIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+V E G +V+LSR+HP+F+ +L EVPE+ +GIV + + R+ G R K+ V S Sbjct: 182 LLYEVNETENGGAEVVLSRSHPEFVKQLMMQEVPELNDGIVVIDRIVREAGYRTKMTVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +DS IDPVG+CVGMRG RV+ VV EL +EKIDI+ +S D + NAL P + KV ++E Sbjct: 242 TDSKIDPVGSCVGMRGIRVKNVVRELNNEKIDIIPYSQDPVELLQNALDPIEIRKVSVNE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG++G N RL SQL G+ +++ E + + +E Sbjct: 302 DDKTISIVVDDADFAAVIGKKGMNARLNSQLIGYELEVQRMAEYNHAMAVERSELATSQE 361 Query: 364 QAI--------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + V+ +I L+AEG++ + ++A++ G E A +I + R+ Sbjct: 362 PWLDKPLKNIEGVNTLIFEHLIAEGYSTPRAILTAAPEKLATVPGISIELADKILEQIRK 421 >gi|291166364|gb|EFE28410.1| transcription termination factor NusA [Filifactor alocis ATCC 35896] Length = 412 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 139/380 (36%), Positives = 218/380 (57%), Gaps = 31/380 (8%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD----------------- 48 E + + EK I +D+++ + ++ KA + + ++ Sbjct: 2 NAEFISAIQQLEDEKGISKDILIEAVEMALVKAYKKNFVEKNNYNDTLVEKDPKKLSLEK 61 Query: 49 --IRVEINPETGDISLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM 104 ++V I+ ETGDI +F EVV E++ +ISL+ A++ D + +G +V + + P Sbjct: 62 NNVQVSIDRETGDIKVFSKKEVVNKREIDLLEGEISLEGAQEIDINYKVGDIVQEEITPR 121 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN-------VIVD 157 +FGR+A Q+A+QV+IQK+ EA RD Y EF ++ EI+ G V R+ N ++ + Sbjct: 122 NFGRIATQTARQVVIQKITEAGRDIIYNEFSNRESEIMIGEVVRIGKHNTCHLNLSLVSE 181 Query: 158 LGNS---DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 G++ + + E I E G R+ YI +V++ PQ+L+SR+ P + +LF Sbjct: 182 KGHTIYGEATMISQEQIPYEEYSVGQRIIVYILEVKKHNNVPQILVSRSRPGLVKRLFER 241 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 EVPEI +GIVQ+K+++R+ GSR KL+V S D S+D +GACVG +G RV +V EL EKI Sbjct: 242 EVPEISDGIVQIKSIAREAGSRTKLSVCSVDPSVDAIGACVGGKGIRVANIVEELHGEKI 301 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 DIV + + ++ NAL P+ V V ++E+ +VIVP QLSLAIG+ GQN RLA++L Sbjct: 302 DIVNYDENPIEYISNALSPSKVVDVSVNEEEKTAKVIVPDYQLSLAIGKEGQNARLAAKL 361 Query: 335 TGWTIDIITEEEDSINRQKD 354 TGW IDI +E + D Sbjct: 362 TGWKIDIKSESQALQETMDD 381 >gi|241895994|ref|ZP_04783290.1| transcription elongation factor [Weissella paramesenteroides ATCC 33313] gi|241870725|gb|EER74476.1| transcription elongation factor [Weissella paramesenteroides ATCC 33313] Length = 386 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 143/370 (38%), Positives = 229/370 (61%), Gaps = 2/370 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ DA+ EK I +V+++ + ++++KA Y ++ V+ + + G I ++ + Sbjct: 14 ELVSALDALEEEKGIKAEVLIAALEEALKKAYEKNYDESENVEVQFDKKKGSIKVYAVKT 73 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E+E QISL+ A + + + ++G + + P DFGR+A Q+AKQ+I+QKVREAER Sbjct: 74 VVDEIEEPYEQISLEEALELNKAYEVGDEIRFEVTPKDFGRLAAQTAKQIIMQKVREAER 133 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYI 186 Y F EII+G V+R + + + L GN ++ ++ + EN + GD++K + Sbjct: 134 GVVYDNFVGYEDEIITGEVEREDSRYLYIILPGNQMAAMKPNDQMPSENYQMGDKIKVLV 193 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V+ EQ+GPQV +SRTHP + +LF EVPE+++G V++K+++R+ G R+K+AV+S + Sbjct: 194 SQVQNEQKGPQVFVSRTHPDLVKRLFEAEVPEVFDGTVEIKSIAREAGDRSKIAVYSHNE 253 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DV 305 ++D VG VG RG+RVQ+VVTEL E +DIV W+ D A F+ N+L PA V +V+ D + Sbjct: 254 NLDAVGTMVGQRGARVQSVVTELSGENMDIVEWTEDPAEFIKNSLNPAEVVEVIFDPTND 313 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 V+VP QLSLAIG+RGQN RLA++LTG+ IDI E + N+ T + Sbjct: 314 RAATVLVPDYQLSLAIGKRGQNARLAARLTGFKIDIKPESAREEVIAELENQSTDNSVAE 373 Query: 366 INVDEIIAHL 375 + + Sbjct: 374 NIEEVELDDN 383 >gi|89898348|ref|YP_515458.1| transcription elongation factor NusA [Chlamydophila felis Fe/C-56] gi|89331720|dbj|BAE81313.1| N utilization protein A [Chlamydophila felis Fe/C-56] Length = 434 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 148/430 (34%), Positives = 239/430 (55%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR + N+++DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLVIDLGKVEGLLPARYYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+HP+F+ +LF EVPE+ +G V++ ++R+ G R KLAV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEDGSVEIIKIAREAGYRTKLAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 TDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL SQ+ + +++ E + + + +F Sbjct: 302 DDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDN 361 Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 EG K Sbjct: 422 GEGKVDEKPK 431 >gi|269792606|ref|YP_003317510.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100241|gb|ACZ19228.1| NusA antitermination factor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 369 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 140/337 (41%), Positives = 219/337 (64%), Gaps = 3/337 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + + EK + DV+ S + ++ A R G ++ V I+ E G+I L + + Sbjct: 6 EFGKALKQLEAEKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSEVKQ 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV EV +IS++ A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVREVTCPDTEISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R + EF D+ G+++ GT+ +VE ++V L ++ ++ R+E + E R GDR K + Sbjct: 126 RQIIFEEFADRTGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRYKFF 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ +GP++++SRTHP + KLF +EVPEI +GI+++K V R+ G R+K+AV S D Sbjct: 186 LLDVRQTTKGPRIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQSLD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 S++DPVGACVG +G+R+++V+ EL E++D++VWS D +V NAL PA V KV L + Sbjct: 246 SNVDPVGACVGPKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPLLDQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V V +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 306 ERALRVFVRPDQLSLAIGKAGQNVRLAARLTGWKIDI 342 >gi|170754323|ref|YP_001781964.1| transcription elongation factor NusA [Clostridium botulinum B1 str. Okra] gi|169119535|gb|ACA43371.1| N utilization substance protein A [Clostridium botulinum B1 str. Okra] Length = 457 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 154/436 (35%), Positives = 260/436 (59%), Gaps = 5/436 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + + +E Sbjct: 302 VDEENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGRLNLSEAKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + ++ + E + E I E S+ +EE ++ E Sbjct: 362 EKILENKKEDKEDKIDSHEEMDSIVEDTKENIKEEISVSESNEEVDSGLEKTMEEAFNTE 421 Query: 421 DITLQKKIRELGVSEE 436 D + + ++ Sbjct: 422 DKENKLEKDINLFEDD 437 >gi|312869034|ref|ZP_07729211.1| transcription termination factor NusA [Lactobacillus oris PB013-T2-3] gi|311095460|gb|EFQ53727.1| transcription termination factor NusA [Lactobacillus oris PB013-T2-3] Length = 398 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 139/391 (35%), Positives = 219/391 (56%), Gaps = 20/391 (5%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S E++ D + EK I ++VV+ + +++ A + YG ++ VE N TG+I + Sbjct: 4 SKVNSEMIGALDYLEKEKGIKKEVVIEALEQALESAYKQNYG-DKNVEVEFNATTGNIKV 62 Query: 63 FRLLEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 + + + ++ E + +SL AR D+ + + + P +FGR+A Q+AKQ Sbjct: 63 YAVKTITDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQ 122 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISREN 175 V++Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+ Sbjct: 123 VVMQRLREEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEH 182 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 R DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G Sbjct: 183 YRVHDRIQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGD 242 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV+S+D +IDPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA Sbjct: 243 RAKVAVYSNDDNIDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAE 302 Query: 296 VTKVVLDE------------DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V V+ ++ V+VP +QLSLAIG+RGQN RLA++LT + IDI + Sbjct: 303 VLDVIFNDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKS 362 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 E + + Q + + Sbjct: 363 ASEMEELQAQAETAEDQPATDDQPLVDENDQ 393 >gi|325282976|ref|YP_004255517.1| NusA antitermination factor [Deinococcus proteolyticus MRP] gi|324314785|gb|ADY25900.1| NusA antitermination factor [Deinococcus proteolyticus MRP] Length = 405 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 138/369 (37%), Positives = 218/369 (59%), Gaps = 1/369 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 VA +++I+ ++ +S+ A + + V ++P++G++ + + EVVE Sbjct: 9 DALREVAQQRNINELQLIEAFEESLALAYKRNIDAEKRVEVHLDPQSGELEVLIIKEVVE 68 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP +++G + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 69 KVEDENMQISLAEALELDPGVEVGMEMEFPVEREQFSRIALQAAKQTLTQKMRETERNVV 128 Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 Y E+KD+ G++++ V R + N V+LG + ++ E I E L PG+RVK Y+ +V Sbjct: 129 YNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAIMPPREQIPGEKLTPGNRVKIYLKEV 188 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NG+V++KAVSR+ G R+K+AVFS++S++D Sbjct: 189 RKTPKGPTILASRADERLLDYLLRQEIPEVQNGVVEIKAVSREAGQRSKVAVFSNNSNVD 248 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG R+QAV EL E++D+++W D F+ NAL PA V + LDE+ G Sbjct: 249 PIGACIGHRGGRIQAVTGELGRERVDVILWDEDQREFIRNALSPAKVGPIDLDEETGTAT 308 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG ID+ S + D Sbjct: 309 VTVTPDQLSLAIGKGGQNVRLAAKLTGQKIDLRETAAISDLDEAMKQAVEAEGEGKSGRD 368 Query: 370 EIIAHLLVA 378 L A Sbjct: 369 TSAFDALFA 377 >gi|297748226|gb|ADI50772.1| N utilization substance protein A [Chlamydia trachomatis D-EC] gi|297749106|gb|ADI51784.1| N utilization substance protein A [Chlamydia trachomatis D-LC] Length = 465 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 235/428 (54%), Gaps = 9/428 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 33 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 92 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 93 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 152 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 153 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 212 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 213 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 272 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 273 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 332 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F Sbjct: 333 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 392 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 393 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 452 Query: 417 LEGIDITL 424 EG Sbjct: 453 GEGKVDEK 460 >gi|283782403|ref|YP_003373158.1| NusA antitermination factor [Pirellula staleyi DSM 6068] gi|283440856|gb|ADB19298.1| NusA antitermination factor [Pirellula staleyi DSM 6068] Length = 404 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 153/422 (36%), Positives = 242/422 (57%), Gaps = 35/422 (8%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N ++L+I D++ EK+ID+DVV + ++ AA+ YG +DI + I+ TG +S Sbjct: 1 MNPADMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALS-- 58 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + + DP GR+ Q+AKQVIIQK+R Sbjct: 59 ----------------GIADGQALDPE-------------EISGRIGAQTAKQVIIQKIR 89 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD E+ D++G++I+G V R E IV LG + ++ R E I E P +RV+ Sbjct: 90 EAERDSLLGEYGDQIGQLINGVVTRSEGAATIVSLGTIEAILPRSEQIPGETHHPNERVR 149 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + +++V+ + +V+LSRT PQF+ +LF E+PEI +G++ V A++R+P R+K+AV S Sbjct: 150 AIVFEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVSS 209 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +D +D VGACVG+RG+R++ +V EL E+IDIV WS D+ T + +L+PA V +V+L + Sbjct: 210 TDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLCD 269 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR V+V ++QLSLAIGR+GQNVRLAS+L GW I+I+T +E + ++ Sbjct: 270 MIGRAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDELEQQIDRAVGGFSKIE- 328 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 V E +A LV +G+ ++L+ ++ + + G EE EI +A + Sbjct: 329 ---GVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQAETLATDAERA 385 Query: 424 LQ 425 Sbjct: 386 AD 387 >gi|297520389|ref|ZP_06938775.1| transcription elongation factor NusA [Escherichia coli OP50] Length = 323 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 138/340 (40%), Positives = 209/340 (61%), Gaps = 18/340 (5%) Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 RPGDRV+ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGS Sbjct: 1 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 60 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 RAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA Sbjct: 61 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 120 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V+DED +++ V L+ AIGR GQNVRLASQL+GW ++++T ++ Q + Sbjct: 121 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 180 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 181 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 240 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 L I ++ + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 241 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE- 299 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 300 ----------------GLTDEKAGALIMAAR-NICWFGDE 322 >gi|150021290|ref|YP_001306644.1| transcription elongation factor NusA [Thermosipho melanesiensis BI429] gi|149793811|gb|ABR31259.1| NusA antitermination factor [Thermosipho melanesiensis BI429] Length = 344 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 127/339 (37%), Positives = 214/339 (63%), Gaps = 1/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ LQ + + EK I D ++ ++ ++ A + +G ++ + IN +TG+I L++L Sbjct: 2 NLDFLQALEQLEEEKGIKVDEIIPIIEKALVSAYKKDFGGEKNVEITINRQTGEIELYQL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 LEVV++VE T QISL+ A + IG + + FGR+A Q+AKQV+IQ++RE Sbjct: 62 LEVVDKVEKETTQISLEDALKISSNAKIGDTIRKRINVKKFGRIAAQTAKQVLIQRIREI 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++Q+ ++ + G+I + V R+ + +G + + + E I E + P +K Y Sbjct: 122 EKEKQFEKYSELAGKITTAEVIRITKEWADIRIGKLETRLPKKEWIPGETIEPASLIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+++++GP++L++R + +F+ L +EVPEI + +V++ + R+PG R K+AV S++ Sbjct: 182 VKDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEIVKIVREPGIRTKVAVKSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGAC+G G R+ A++ EL+ EK+DI+ WS D + +AL+PA V +V + D + Sbjct: 242 PKVDPVGACIGEEGVRIAAILRELKGEKLDIIKWSDDPKELIASALQPANVVEVEILDPE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 +IVP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 NKASRIIVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|62185081|ref|YP_219866.1| transcription elongation factor NusA [Chlamydophila abortus S26/3] gi|62148148|emb|CAH63905.1| N utilization substance protein A [Chlamydophila abortus S26/3] Length = 434 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 149/430 (34%), Positives = 240/430 (55%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR + N+I+DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAVLE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL SQ+ + +++ E + + + +F Sbjct: 302 DDKVIAIVVQDADYATVIGQRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 EG K Sbjct: 422 GEGKVDEKPK 431 >gi|329942818|ref|ZP_08291597.1| transcription termination factor NusA [Chlamydophila psittaci Cal10] gi|332287410|ref|YP_004422311.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC] gi|313847990|emb|CBY16987.1| N utilization substance protein A [Chlamydophila psittaci RD1] gi|325507005|gb|ADZ18643.1| transcription elongation factor NusA [Chlamydophila psittaci 6BC] gi|328815078|gb|EGF85067.1| transcription termination factor NusA [Chlamydophila psittaci Cal10] gi|328914659|gb|AEB55492.1| N utilization substance protein A [Chlamydophila psittaci 6BC] Length = 434 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 149/430 (34%), Positives = 240/430 (55%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP+TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPKTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP +IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR + N+I+DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL SQ+ + +++ E + + + +F Sbjct: 302 DDKVIAIVVQDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 EG K Sbjct: 422 GEGKVDEKPK 431 >gi|330444480|ref|YP_004377466.1| transcription termination factor NusA [Chlamydophila pecorum E58] gi|328807590|gb|AEB41763.1| transcription termination factor NusA [Chlamydophila pecorum E58] Length = 435 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 238/431 (55%), Gaps = 10/431 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++S + +++ AA+ ++I V INP TGDI +F Sbjct: 2 NKDLIAIFDYMEKEKGIQRTTIISAIESALKIAAKKTLRDDANISVNINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V+ N + +I L AR+ DP +IG + P +FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVDFCNNPSKEIPLDKAREFDPDCEIGQYMDVPFVSENFGRIAAHTARQIIGQKLRYA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR + N+I+DLG + ++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFVKGSNLIIDLGKVEAILPARFYPKTEKHKIGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ + G +V+LSR+HP+F+ +LF EVPE+ G+V + ++R+PG R KLAV S Sbjct: 182 LLYEVQELDNGGAEVILSRSHPEFVKQLFLQEVPELEEGVVSIVKIAREPGYRTKLAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRG+RV+ ++ EL DEKIDIV +S + N L P + K+ + E Sbjct: 242 SDFKTDPVGAFVGMRGARVKNIIRELNDEKIDIVNYSSTPTELLQNLLYPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL SQ+ + +++ E + + + +F Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 364 QAI--------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + + +++ L G+ + ++ S+++S+ G E A +I + + Sbjct: 362 PQLDQPLQEIEGISKLVIQNLEHAGYDTIRKVLLASASDLSSVPGIGLELAYKILEQVSK 421 Query: 416 YLEGIDITLQK 426 Y EG + Sbjct: 422 YGEGKVDEKPE 432 >gi|168184627|ref|ZP_02619291.1| N utilization substance protein A [Clostridium botulinum Bf] gi|237795857|ref|YP_002863409.1| transcription elongation factor NusA [Clostridium botulinum Ba4 str. 657] gi|182672266|gb|EDT84227.1| N utilization substance protein A [Clostridium botulinum Bf] gi|229261617|gb|ACQ52650.1| N utilization substance protein A [Clostridium botulinum Ba4 str. 657] Length = 439 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 158/437 (36%), Positives = 267/437 (61%), Gaps = 7/437 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E Sbjct: 302 VDEENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA--REYLE 418 + ++ + + E + + I E S+ E+ E + +E +E Sbjct: 362 EKILEDKKEDKEDRIDLKEEIDNTVKNVKEYIEEDISVSEDKEDITEEDVNSSEDKEDIE 421 Query: 419 GIDITLQKKIRELGVSE 435 ++I +K I E+ E Sbjct: 422 EVNIDTEKAIEEIFKDE 438 >gi|46198657|ref|YP_004324.1| transcription elongation factor NusA [Thermus thermophilus HB27] gi|55980670|ref|YP_143967.1| transcription elongation factor NusA [Thermus thermophilus HB8] gi|1352608|sp|P48514|NUSA_THET8 RecName: Full=Transcription elongation protein nusA gi|642364|emb|CAA88036.1| NusA protein [Thermus thermophilus] gi|46196280|gb|AAS80697.1| N utilization substance protein A [Thermus thermophilus HB27] gi|55772083|dbj|BAD70524.1| N utilization substance protein A (NusA) [Thermus thermophilus HB8] Length = 387 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 139/384 (36%), Positives = 218/384 (56%), Gaps = 12/384 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----------GTMSDIRVEINP 55 E ++ +A E+ + + +L ++++KA G ++ V I+P Sbjct: 2 NREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYIDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +G I + + VVE+VE+ +I+L A DP + +G + P+ P + R+A+Q + Sbjct: 62 NSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDLR 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + R E I E Sbjct: 122 QILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPRSEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K Y+ V + +GP +L+SR H + + L EVPEI GIV++KA++R+PG Sbjct: 182 KYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA Sbjct: 242 RRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I E E S + Sbjct: 302 QVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIH-FEEAEISDLDEAL 360 Query: 355 FNERTQFFMQAINVDEIIAHLLVA 378 + L Sbjct: 361 RRAAEEEAEARERKAREEFEKLFR 384 >gi|194467745|ref|ZP_03073731.1| NusA antitermination factor [Lactobacillus reuteri 100-23] gi|194452598|gb|EDX41496.1| NusA antitermination factor [Lactobacillus reuteri 100-23] Length = 393 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 142/373 (38%), Positives = 218/373 (58%), Gaps = 25/373 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65 Query: 66 LEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+ Sbjct: 126 QRLREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLD 305 Query: 299 VVLDEDV-----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V+ +ED V+VP QLSLAIG+RGQN RLA++LT + IDI Sbjct: 306 VIFNEDKPASENEESEETTEGQTERSCTVVVPDNQLSLAIGKRGQNARLAARLTKYKIDI 365 Query: 342 ITEEEDSINRQKD 354 +E E + N Q+ Sbjct: 366 KSESEMAENDQES 378 >gi|227499286|ref|ZP_03929398.1| transcription termination factor NusA [Anaerococcus tetradius ATCC 35098] gi|227218637|gb|EEI83871.1| transcription termination factor NusA [Anaerococcus tetradius ATCC 35098] Length = 407 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 147/403 (36%), Positives = 245/403 (60%), Gaps = 7/403 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I ++ L Sbjct: 2 NNDFMLALDELCKEKNLDKPTILDALQKALIKSYQKNYDNQENVDVIIDEETGKIEVYAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+V+EV + +ISLK AR +P+ +G + L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KEIVDEVNDNIVEISLKDARVINPTYRLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ ++ E+I+GT++R + NV V+L +G++ E +S E P R+K Sbjct: 122 QRDSLYGEYIERANEMITGTIQREDKYNVYVNLDKIEGIVPAKEQVSTEKYLPNARMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSSKEPQIILSRASQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +ID +GAC+G +G+RV ++V EL+ EKIDI+ + D F+ NAL PA + KV+++E Sbjct: 242 ENIDAIGACIGFKGARVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIKVLVNEKN 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V +QLSLAIG+ GQN RLA++LTGW IDI + EE Q D +E Sbjct: 302 KQSLVVVASDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEFEKLSQVDIDEI------- 354 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + ++E+ ++E +E + + E +E+ E Sbjct: 355 LGLNELDEESQLSEESLSKDEEDLEVSEDYDNKEPVEEDYIGE 397 >gi|94985335|ref|YP_604699.1| transcription elongation factor NusA [Deinococcus geothermalis DSM 11300] gi|94555616|gb|ABF45530.1| NusA antitermination factor [Deinococcus geothermalis DSM 11300] Length = 395 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 131/388 (33%), Positives = 216/388 (55%), Gaps = 3/388 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 VA ++I+ ++ S+ +A + V ++P +G++ + + EVVE Sbjct: 10 DALREVAQARNINELQLIEAFEQSLAQAYSRNVEPDRRVEVHLDPVSGELEVLIVREVVE 69 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 70 KVEDENLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETERNVV 129 Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 Y E+KD+ G++++ V R + N V+LG + ++ E I E L PG+RVK Y+ +V Sbjct: 130 YNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLVPGNRVKIYLKEV 189 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NGIV++KA++R+ G R+K+AV+S + ++D Sbjct: 190 RKTPKGPTILASRADERLLEYLLRQEIPEVANGIVEIKAIAREAGQRSKVAVYSHNPNVD 249 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D Sbjct: 250 PIGACIGHRGNRIQAVTGELGRERVDVILWDANARDFIRNALSPAKVGLIEVRPDTREAT 309 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ + Sbjct: 310 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAIQDLDAAMQQALQEEQGNTGPSS 369 Query: 370 EIIAHLLVAEGFADVEELACVKISEIAS 397 + F D + +A + Sbjct: 370 AAASA--FDALFRDSKSVATASPDDEQE 395 >gi|29840227|ref|NP_829333.1| transcription elongation factor NusA [Chlamydophila caviae GPIC] gi|29834575|gb|AAP05211.1| N utilization substance protein A [Chlamydophila caviae GPIC] Length = 434 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 149/430 (34%), Positives = 237/430 (55%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R V++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE EN + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSEHFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR + N+I+DLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEGLLPARCYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R KLAV S Sbjct: 182 LLQEVQESENGGAEVILSRSHPEFVKQLFLQEVPELEEGFVEIVKIAREAGYRTKLAVSS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP + + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL SQ+ + +++ E + + + +F Sbjct: 302 DDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDN 361 Query: 364 QAINVDEIIA-------HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ++ + LV G+ + ++ +++AS+ G E A +I + +Y Sbjct: 362 PQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 EG K Sbjct: 422 GEGKVDEKPK 431 >gi|255611947|ref|XP_002539363.1| Transcription elongation protein nusA, putative [Ricinus communis] gi|223506838|gb|EEF23020.1| Transcription elongation protein nusA, putative [Ricinus communis] Length = 316 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 203/316 (64%), Positives = 250/316 (79%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 MVKLF MEVP IY+GI+QV++V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV Sbjct: 1 MVKLFTMEVPGIYDGIIQVRSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120 Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 VRLASQLTGW IDI+TE E+S RQK+FNERT FM A++VDE++ +L +EGFA VEEL Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDALDVDEMVGQVLASEGFAAVEEL 180 Query: 388 ACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447 A V + EIASI+GFDE+TA EIQ RAREYLE ++ + +K + LGV++EL I GI +++ Sbjct: 181 AYVDLDEIASIDGFDEDTAQEIQTRAREYLEKLEAEMDEKRKALGVTDELRQINGITAQM 240 Query: 448 KVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARY 507 VALGE+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E M++ AR Sbjct: 241 MVALGEDGIKTVEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMVVQARL 300 Query: 508 KMGWIEKEKVADEEVQ 523 GWI +E +A E Sbjct: 301 LAGWITEEDLAKEAEA 316 >gi|257066114|ref|YP_003152370.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548] gi|256797994|gb|ACV28649.1| NusA antitermination factor [Anaerococcus prevotii DSM 20548] Length = 433 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 140/365 (38%), Positives = 227/365 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + D + EK++D+ +L + ++ K+ + Y ++ V I+ ETG I +F L Sbjct: 2 NNDFMLALDELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFAL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVV+EV++ +ISLK A + + S +G + L P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KEVVDEVDDTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ ++ E+I+GT++R + NV V+L +GV+ E + E ++K Sbjct: 122 QRDSLYGEYIERANEMITGTIQRQDKYNVYVNLDKIEGVVPIKEQVPTEEYPANAKMKFL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VR + PQ++LSR+ + +LF +EVPEI +GI+++ +++R+ GSR K+AVFS+D Sbjct: 182 IKEVRNSSKEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID VGAC+G +G RV ++V EL+ EKIDI+ + D F+ NAL PA + +V+++E Sbjct: 242 EGIDAVGACIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNEKS 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V +QLSLAIG+ GQN RLA++LTGW IDI + EE Q++ +E Sbjct: 302 KKSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEYESLSQEEIDEILGLNEID 361 Query: 366 INVDE 370 E Sbjct: 362 EEASE 366 >gi|153938223|ref|YP_001391719.1| transcription elongation factor NusA [Clostridium botulinum F str. Langeland] gi|152934119|gb|ABS39617.1| N utilization substance protein A [Clostridium botulinum F str. Langeland] gi|295319745|gb|ADG00123.1| N utilization substance protein A [Clostridium botulinum F str. 230613] Length = 439 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 158/437 (36%), Positives = 266/437 (60%), Gaps = 7/437 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E G+I Sbjct: 2 NQEFVEALREIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRENGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VV+ VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVDFVEEEVEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNGIV++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELICNALSPAKVIDVTI 301 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ +V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E Sbjct: 302 VDEENKAAKVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEGTLNSSETKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA--REYLE 418 + ++ + + E + E I + S+ E E + +E +E Sbjct: 362 EKILENKKEDKEDKIDLKEEIDNTVENVKEYIEKDISVSEDKENITEEDVNSSEDKEDIE 421 Query: 419 GIDITLQKKIRELGVSE 435 ++I +K I E+ E Sbjct: 422 EVNIDTEKAIEEIFKDE 438 >gi|302865966|ref|YP_003834603.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] gi|302568825|gb|ADL45027.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] Length = 347 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 134/354 (37%), Positives = 201/354 (56%), Gaps = 27/354 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQELDADGTV--TREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTT 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 S ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D Sbjct: 223 SGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSRGGADH 336 >gi|217077786|ref|YP_002335504.1| transcription elongation factor NusA [Thermosipho africanus TCF52B] gi|217037641|gb|ACJ76163.1| transcription termination factor NusA [Thermosipho africanus TCF52B] Length = 344 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 133/339 (39%), Positives = 212/339 (62%), Gaps = 1/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ LQ + + EK + D ++ V+ ++ A + +G ++ + IN +TG+I ++L Sbjct: 2 NLDFLQALEQLEEEKGVKVDEIIPVIEKALISAYKKDFGGEKNVEIIINRQTGEIEAYQL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 LEVVE VE QISL+ A + S IG +V L FGR+A Q+AKQV+IQK+RE Sbjct: 62 LEVVENVEKPNLQISLEEALKINSSAKIGDIVKKRLNIKKFGRIAAQTAKQVLIQKIREI 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++Q+ ++ + G+I + V RV + +G + + + E I E ++P +K Y Sbjct: 122 EKEKQFEKYSELAGKITTAEVVRVTKDWADIRIGKLETRLPKKEWIPGEEIQPASLIKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+++++GP++L++R + +F+ L +EVPEI + +V+V + R+PG R K+AV S++ Sbjct: 182 VKDVKKDKKGPKILVTRINEEFIKGLLELEVPEIESKVVEVVKIVREPGIRTKVAVKSNN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGAC+G G R+ A++ EL EKIDI+ WS D + +AL+PA V +V + D + Sbjct: 242 PKVDPVGACIGEEGIRIAAILKELNGEKIDIIKWSDDPKELIASALQPANVIEVEILDYE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 VIV QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 NKASRVIVSPNQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|312127897|ref|YP_003992771.1| transcription termination factor nusa [Caldicellulosiruptor hydrothermalis 108] gi|311777916|gb|ADQ07402.1| transcription termination factor NusA [Caldicellulosiruptor hydrothermalis 108] Length = 357 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 213/351 (60%), Gaps = 8/351 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q + Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE R + ++ KV I++G V+R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKRRSIIFEDYSSKVDNIVTGVVQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K YI +VR + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGVMMKFYITEVRIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357 >gi|117928724|ref|YP_873275.1| transcription elongation factor NusA [Acidothermus cellulolyticus 11B] gi|117649187|gb|ABK53289.1| NusA antitermination factor [Acidothermus cellulolyticus 11B] Length = 348 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 24/352 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + ++ EK I D+++ + ++ A + G RV ++ +TG++++ Sbjct: 5 MAALRSLEREKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D ++ + P DF R+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AAETDAEGNV--IREFDHTPQDFNRIAAMTAKQVILQRLRDAEHEL 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G+++ G +++ + NV V+LG +GV+ E + E G+R++ Y+ Sbjct: 103 TFGEYAGREGDVVGGIIQQQHDSRNVYVNLGKVEGVLPVTEQVPGERYVHGERIRCYVLS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 163 VHKGIRGPQITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGL 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G RV+AV+ EL EKIDI+ +S D ATFV NAL PA VT V + D Sbjct: 223 NAKGACIGPLGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 VIVP QLSLAIGR GQN RLA++LTGW IDI + E +++ + Sbjct: 283 ARVIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDTEAALSPGDADGQHP 334 >gi|295112228|emb|CBL28978.1| NusA antitermination factor [Synergistetes bacterium SGP1] Length = 364 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 134/353 (37%), Positives = 220/353 (62%), Gaps = 3/353 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + +Q + +A E+++ ++++S + ++ A + + V +N ETGDI + L Sbjct: 6 DFVQALNQIAEERNLAPELIVSSLEAALISAYKKYQSGDQRVEVHVNTETGDILVEELRT 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVEE+E+ +I+L A+ +G + P FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVEELESPDTEITLGDAKRLGFADASVGDELHLEKDPGHFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R Y EF DKVGE+++GT+ + E V+ +G ++ ++ R E I E PG +K Y Sbjct: 126 RQVIYSEFSDKVGEMMTGTIVKAENDQVLARIGERTEAILPRKERIPGEEYVPGQTMKFY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + KL +E+PE+ +G+++++ + R+ G RAK+++ + D Sbjct: 186 VLDVRQMTRGPKIVISRTHPGLLRKLMELEIPEVRDGVIEIRNIVREGGGRAKVSLSTMD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++DPVGACVG G+R++A+ EL EK+DI+VWS D ++ NAL PA V KV + + Sbjct: 246 QNVDPVGACVGAGGARIKAISQELMGEKVDIIVWSSDPLAYIRNALSPAQVVKVEPVLDQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V EQLSLAIG+ GQNVRLA++LTGW IDI + + + +D Sbjct: 306 EHAAKAYVEPEQLSLAIGKAGQNVRLAARLTGWKIDINALQAERMPTLQDIFH 358 >gi|218296560|ref|ZP_03497288.1| NusA antitermination factor [Thermus aquaticus Y51MC23] gi|218243102|gb|EED09634.1| NusA antitermination factor [Thermus aquaticus Y51MC23] Length = 385 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 140/379 (36%), Positives = 221/379 (58%), Gaps = 11/379 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----------YGTMSDIRVEINP 55 E ++ +A E+ + + VL ++++KA G ++ V I+P Sbjct: 2 NREFIEALQQLALERGVSAEEVLEAFKEALRKAYIKRQKGYKKEEVEEGKGPEVDVYIDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +TG I + + VVE+VE+ +ISL A DP + +G + P+ P RVA+Q + Sbjct: 62 QTGRIEMVEVRRVVEKVEDPDKEISLAEALQYDPEVQLGDEMEFPIDPEGLSRVAIQDLR 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++E+ER+R + E+KDK G++++G V RV+ GNV VDLG + + + E I E Sbjct: 122 QLLTQRLKESERNRIFNEYKDKEGQVLTGVVTRVDNRGNVFVDLGRGEAYLPKSEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K+Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+PG Sbjct: 182 RYYPGQRLKAYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV S + ++DP+GAC+G +G R+QAV EL EK+DI++WS D F+ NAL PA Sbjct: 242 RRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + LD + + V V K+Q SLAIG GQNVRLAS+LTG+ I E ++ Sbjct: 302 QVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAEISDLDEAIR 361 Query: 355 FNERTQFFMQAINVDEIIA 373 + + + +E Sbjct: 362 RAAQEEAEEKTRAKEEFEK 380 >gi|330466360|ref|YP_004404103.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] gi|328809331|gb|AEB43503.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] Length = 347 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 137/344 (39%), Positives = 199/344 (57%), Gaps = 27/344 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G S RVEI+ ++G ++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQSHARVEIDRKSGAALVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ DP G V P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQEMDPEG--GVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVTVDLGKLEGVLPQSEQVPGERYTHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRTHPNLVKKLFALEVPEIADGTVEISAIAREAGHRTKIAVRSTT 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D Sbjct: 223 PGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 283 NRAARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQA 326 >gi|315502523|ref|YP_004081410.1| nusa antitermination factor [Micromonospora sp. L5] gi|315409142|gb|ADU07259.1| NusA antitermination factor [Micromonospora sp. L5] Length = 347 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 134/354 (37%), Positives = 201/354 (56%), Gaps = 27/354 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ ++G S++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQELDADGTV--TREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHETRREKGIVSVDLGKLEGVLPQSEQVPGERYEHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTT 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 S ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D Sbjct: 223 SGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAETAAPQSRGGADH 336 >gi|281491260|ref|YP_003353240.1| transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] gi|281375001|gb|ADA64519.1| Transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] Length = 382 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIHELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348 >gi|146297077|ref|YP_001180848.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410653|gb|ABP67657.1| NusA antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 356 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 134/347 (38%), Positives = 215/347 (61%), Gaps = 8/347 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I+R+ + SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TTDFQELFSAIDELEREYKIEREYIYSVLESALLTAYKQVRGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 D+ +F +VVE V++ +IS++ AR D +G +V+ +P DF R A + +Q + Sbjct: 67 DVKIFEYKKVVENVKDKRNEISVEDARKIDKRYQVGDIVAIEVPISDFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE +R+ + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKKRNIIFEDYSAKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K Y+ DV+ + + V LSRTHP + +L EVPEI GI+++K ++R+ G Sbjct: 187 KPGTMMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKGIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKYLGSEKIDIVRWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + L+ + V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 307 EVVHIDLNLVEKKAFVLVPNDQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|307297718|ref|ZP_07577524.1| transcription termination factor NusA [Thermotogales bacterium mesG1.Ag.4.2] gi|306916978|gb|EFN47360.1| transcription termination factor NusA [Thermotogales bacterium mesG1.Ag.4.2] Length = 342 Score = 309 bits (791), Expect = 9e-82, Method: Composition-based stats. Identities = 133/339 (39%), Positives = 209/339 (61%), Gaps = 1/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L LL+ D + EK+I+++ V+ ++ ++Q A + + + SD+ V I+ TGDI +F Sbjct: 2 NLNLLEALDQLQDEKNIEKEEVIDILEKALQSAYKKNFASESDVDVRIDRLTGDIEVFEK 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 L VVE VEN + ++ L+ A D S +IG V L F R+A Q+A+QV+IQK+RE Sbjct: 62 LLVVEAVENPSLEVKLEEALKLDSSAEIGSTVERKLNIKKFKRIAAQTARQVLIQKIREK 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E++ + ++ D G + + V RV + + +G + I E I E R +K Y Sbjct: 122 EKENLFDKYVDMKGTVTTSEVLRVTDEWIDLRIGKLETRIPTKELIPGEQPRLNSLMKVY 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV + RGP++L++R P F+++L ++VPEI +G V VKA++R+ G R K+AVFS + Sbjct: 182 VVDVTKSVRGPRLLVTRRTPDFVIELLKLQVPEIASGDVTVKAIAREEGIRTKVAVFSQN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 + +DPVGAC+G G+R+ V+ E++ EK+DI+ WS + A FV N++ PA +V + + + Sbjct: 242 TKVDPVGACIGESGTRIAEVLREIKPEKVDILRWSDNPAEFVGNSIAPASALEVKVANIE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V V QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 302 NHEATVFVSPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 >gi|166154318|ref|YP_001654436.1| transcription elongation factor NusA [Chlamydia trachomatis 434/Bu] gi|166155193|ref|YP_001653448.1| transcription elongation factor NusA [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335569|ref|ZP_07223813.1| transcription elongation factor NusA [Chlamydia trachomatis L2tet1] gi|2160697|gb|AAB58904.1| NusA [Chlamydia trachomatis] gi|165930306|emb|CAP03792.1| N utilization substance protein A [Chlamydia trachomatis 434/Bu] gi|165931181|emb|CAP06746.1| N utilization substance protein A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 434 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 147/428 (34%), Positives = 236/428 (55%), Gaps = 9/428 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFED 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITL 424 EG Sbjct: 422 GEGKVDEK 429 >gi|255348459|ref|ZP_05380466.1| transcription elongation factor NusA [Chlamydia trachomatis 70] gi|255503001|ref|ZP_05381391.1| transcription elongation factor NusA [Chlamydia trachomatis 70s] Length = 434 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 147/428 (34%), Positives = 236/428 (55%), Gaps = 9/428 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITL 424 EG Sbjct: 422 GEGKVDEK 429 >gi|15672746|ref|NP_266920.1| transcription elongation factor NusA [Lactococcus lactis subsp. lactis Il1403] gi|12723682|gb|AAK04862.1|AE006310_4 transcription termination protein NusA [Lactococcus lactis subsp. lactis Il1403] Length = 382 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGTKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLDDYE 348 >gi|222529041|ref|YP_002572923.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|222455888|gb|ACM60150.1| NusA antitermination factor [Caldicellulosiruptor bescii DSM 6725] Length = 357 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 134/351 (38%), Positives = 214/351 (60%), Gaps = 8/351 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q + Sbjct: 67 SVKIYEYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEIPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K Y+ DV+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGTLMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357 >gi|312622703|ref|YP_004024316.1| nusa antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203170|gb|ADQ46497.1| NusA antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 357 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 134/351 (38%), Positives = 214/351 (60%), Gaps = 8/351 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +ISL+ A+ D IG +V+ +P F R A + +Q + Sbjct: 67 SVKIYEYRKVVENVKDRKNEISLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE +R + ++ K+ I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKKRSIIFEDYSSKIDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K Y+ DV+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGTLMKFYLVDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357 >gi|326406315|gb|ADZ63386.1| transcription antitermination factor [Lactococcus lactis subsp. lactis CV56] Length = 382 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNLDDYE 348 >gi|325126000|gb|ADY85330.1| Transcription termination-antitermination factor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 468 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 137/361 (37%), Positives = 217/361 (60%), Gaps = 3/361 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 66 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 125 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 126 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 185 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 186 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 245 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 246 TKVGADGKGAQIRVSRTPPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 305 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304 +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D Sbjct: 306 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 365 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 366 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 425 Query: 365 A 365 Sbjct: 426 Q 426 >gi|169350438|ref|ZP_02867376.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552] gi|169292758|gb|EDS74891.1| hypothetical protein CLOSPI_01206 [Clostridium spiroforme DSM 1552] Length = 432 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 155/401 (38%), Positives = 236/401 (58%), Gaps = 9/401 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLE 67 ++ + + EK I++DV L ++ +SI KA + Y + +++RVEIN +TG LF L Sbjct: 6 FMEALNLLIEEKGIEKDVFLEMLKESIAKAYKKNYLNSDANVRVEINEKTGKFRLFELRT 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+++E+ ++SL+ A+ +P IG VV GR+A KQ+ QK+RE E+ Sbjct: 66 VVDDLEDEDLELSLEEAQAINPFYKIGDVVETEADVEHIGRLAAIQTKQLFRQKIRETEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y EF DK +II+G V RVE IV++G + + ++ I E L+ G +K Y+ Sbjct: 126 ETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTGAFLALNQQIPGEKLKEGQHLKVYVC 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV R +G +++SRT P F+ +LF +EVPE+++G V++KAVSR+PG R+K+AV++S+ + Sbjct: 186 DVDRGTKGTHIVVSRTEPNFVKRLFELEVPEVFDGTVEIKAVSREPGERSKIAVYASNEN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+G+CVG +GSRV+ VV EL E IDI++WS D F+ NAL P+ V V ++E Sbjct: 246 IDPIGSCVGPKGSRVKNVVDELNGEMIDIIIWSNDPVEFISNALSPSEVKYVSINEKDHS 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP +QLSLAIG+RGQN RLA +LTGW IDI + E N ++ + Sbjct: 306 ALVIVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEALENGLIT--------LEELE 357 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + E FA + ++ I D+E Sbjct: 358 SKSVPVDASFEEQFAQEMLENNDEANDEEVIVKNDDEIIDA 398 >gi|312793236|ref|YP_004026159.1| nusa antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180376|gb|ADQ40546.1| NusA antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 357 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 137/351 (39%), Positives = 213/351 (60%), Gaps = 8/351 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E IDRD V SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TLDFQELFSAIDELEREYKIDRDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q + Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE R + + K+ I++G ++R++ NVIV++ G + ++ +E IS E Sbjct: 127 IGKIREKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQISGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K YI DV+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGTMMKFYITDVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357 >gi|268316867|ref|YP_003290586.1| NusA antitermination factor [Rhodothermus marinus DSM 4252] gi|262334401|gb|ACY48198.1| NusA antitermination factor [Rhodothermus marinus DSM 4252] Length = 421 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 145/410 (35%), Positives = 230/410 (56%), Gaps = 12/410 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ +A+ K IDRD + ++ D + R YG+ + NP+ GDI + + Sbjct: 3 NSELVSSFAEIAHSKGIDRDTLQLIVEDVFRAMIRKRYGSDEAFEIIFNPDHGDIQILHI 62 Query: 66 LEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EVV + +E+ QI L AR DP ++G V+ + +FGR A+ +A+Q Q++R Sbjct: 63 REVVPDWELEDPVTQIELSEARKIDPDFEVGDEVASEVNIAEFGRRAIMTARQTFSQRIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + E+++ Y E+ + +GEI+ G + ++ V+V ++ ++ R+E I R+ R GD ++ Sbjct: 123 DLEKEKIYQEYSELIGEIVVGEIYQIRRREVLVMHNRTELILPREEQIPRDRYRKGDTLR 182 Query: 184 SYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + +VRRE PQV++SR P F+ +L +EVPEI GIV+VK + R+PG RAK+AV Sbjct: 183 AIVKEVRREAGGAPQVIISRADPVFLERLLELEVPEIEEGIVEVKKIVREPGERAKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D +DPVGACVG+RG+R+ A+V EL +E ID++ WS D + AL PA V L+ Sbjct: 243 SHDERVDPVGACVGLRGNRIHAIVRELSNENIDVIEWSDDPRELIKRALTPARPLSVTLN 302 Query: 303 EDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 E+ R +V+V +++S AIGR G N+RLAS+LTG+ +D+ E + Sbjct: 303 EEANPPRAKVVVRADEVSQAIGRGGVNIRLASRLTGYELDVYREIRPDEEDIEIEE---- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 A +DE I L G + + + E+ G D ETA + Sbjct: 359 ---FADELDEEIIARLREIGCDTARAVLDLSVEELMRRSGLDAETARRVM 405 >gi|312876952|ref|ZP_07736927.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311796267|gb|EFR12621.1| NusA antitermination factor [Caldicellulosiruptor lactoaceticus 6A] Length = 357 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 133/351 (37%), Positives = 212/351 (60%), Gaps = 8/351 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +ISL+ A+ D +G +V+ +P F R A + +Q + Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVAIEVPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE R + + K+ I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKRRSIIFENYSSKIDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K YI +V+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGTMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDIKGKD 357 >gi|259503125|ref|ZP_05746027.1| N utilization substance protein A [Lactobacillus antri DSM 16041] gi|259168991|gb|EEW53486.1| N utilization substance protein A [Lactobacillus antri DSM 16041] Length = 389 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 20/386 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + + Sbjct: 1 MIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNATTGNIKVYAVKTI 59 Query: 69 VEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++ E + +SL AR D+ + + + P +FGR+A Q+AKQV++Q++ Sbjct: 60 TDDEEKVAADSNQYMSLAEARKLPHGQGYDVDDQIREEVTPRNFGRIAAQTAKQVVMQRL 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDR 181 RE ER Y ++K EII+G V R + VDLG +G + + + E+ R DR Sbjct: 120 REEERRIVYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYRVHDR 179 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK+AV Sbjct: 180 IQVYVSKVNDDRRGPQIYVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAKVAV 239 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V V+ Sbjct: 240 YSNDDNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLDVIF 299 Query: 302 DE------------DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 ++ V+VP +QLSLAIG+RGQN RLA++LT + IDI + E Sbjct: 300 NDPVTIEREDGEEEQERSCTVVVPDDQLSLAIGKRGQNARLAARLTKYKIDIKSASEMEE 359 Query: 350 NRQKDFNERTQFFMQAINVDEIIAHL 375 + ++ + Q + Sbjct: 360 IQAQEALDEDQPVADDQPSVDENDQS 385 >gi|134102374|ref|YP_001108035.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|291004241|ref|ZP_06562214.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|133914997|emb|CAM05110.1| putative transcriptional termination/antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length = 352 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 136/346 (39%), Positives = 197/346 (56%), Gaps = 27/346 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + VL + ++ A R G RVE++ +TG + + Sbjct: 5 IAALRAIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +A + D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 58 -------------IAHTLGADGTVAEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF K GEI+ G ++R N VIV +G+S+GVI E + E G R+K Y Sbjct: 103 TFGEFSTKEGEILGGVIQRDAKANSRGMVIVQVGDSEGVIPAAEQVPGERYEHGMRIKCY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 163 VVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ +S D ATFV NAL PA V V +DE Sbjct: 223 GGVNAKGACIGPMGARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + S Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDADPSSP 328 >gi|15834991|ref|NP_296750.1| transcription elongation factor NusA [Chlamydia muridarum Nigg] gi|270285160|ref|ZP_06194554.1| transcription elongation factor NusA [Chlamydia muridarum Nigg] gi|270289179|ref|ZP_06195481.1| transcription elongation factor NusA [Chlamydia muridarum Weiss] gi|301336555|ref|ZP_07224757.1| transcription elongation factor NusA [Chlamydia muridarum MopnTet14] gi|7190412|gb|AAF39230.1| N utilization substance protein A [Chlamydia muridarum Nigg] Length = 434 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 142/420 (33%), Positives = 232/420 (55%), Gaps = 9/420 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG +K N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVIKSFSRGSNLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRSHPEFVKQLFMQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SSPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFED 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 >gi|57234284|ref|YP_181708.1| transcription elongation factor NusA [Dehalococcoides ethenogenes 195] gi|57224732|gb|AAW39789.1| N utilization substance protein A [Dehalococcoides ethenogenes 195] Length = 491 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 137/355 (38%), Positives = 218/355 (61%), Gaps = 1/355 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-YGTMSDIRVEINPETGDISLFR 64 + + L ++ EK++ ++VVL+ + ++ A R + +I V+I+ TG + + Sbjct: 2 KSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVMA 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VVE+V + ++ L A+ IG ++ P D GR+A Q+AKQVI+Q++ E Sbjct: 62 EKLVVEKVTDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLHE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AE + E+ K G+ + G V+R+E + VD+G + ++ E E R G R+K Sbjct: 122 AENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGRVEAIMPASEQAYGERYRAGQRIKV 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV + +GP V++SR+HP + +LF MEVPE++N +V++KAV+R+ GSR+K+AV + Sbjct: 182 YVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 IDPVG CVG+RG R+Q +V+EL EKID+V W + A F+ N+L PA VTKV+L+E Sbjct: 242 QPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILNEA 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V++P QLSL IG+ GQNVRLA +LTGW IDI + ++ + R ++ + Sbjct: 302 EKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEETARKQ 356 >gi|15806798|ref|NP_295520.1| transcription elongation factor NusA [Deinococcus radiodurans R1] gi|6459575|gb|AAF11353.1|AE002021_2 N-utilization substance protein A [Deinococcus radiodurans R1] Length = 401 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 138/386 (35%), Positives = 223/386 (57%), Gaps = 3/386 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + VA ++I+ ++ S+Q+A I V ++P++G + + + EVVE Sbjct: 14 EALREVAQARNINELQLIEAFEQSLQQAYVRNVEPDKRIEVHLDPQSGVLEVLIVREVVE 73 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 74 KVEDEHMQISLADALELDPGVEIGMEMEFPVDQEMFSRIALQAAKQTLTQKMRETERNVV 133 Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+KD+ G++++ V R + N V+LG + ++ E I E L PG RVK Y+ +V Sbjct: 134 FNEYKDREGQVLNAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGGRVKIYLKEV 193 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS +S++D Sbjct: 194 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNSNVD 253 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + +D Sbjct: 254 PIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGPIEVQQDSRDAT 313 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ S + + Sbjct: 314 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAISDLDAAMQQALEEEQQG--GGN 371 Query: 370 EIIAHLLVAEGFADVEELACVKISEI 395 E A F D + +A ++ Sbjct: 372 ENAAQSAFDALFKDSKSVATASPDDV 397 >gi|125624585|ref|YP_001033068.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris MG1363] gi|124493393|emb|CAL98367.1| transcription elongation factor nusA [Lactococcus lactis subsp. cremoris MG1363] gi|300071376|gb|ADJ60776.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris NZ9000] Length = 382 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 135/346 (39%), Positives = 216/346 (62%), Gaps = 1/346 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++V+ + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIVIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN GDRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVGDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTAPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348 >gi|225027047|ref|ZP_03716239.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353] gi|224955511|gb|EEG36720.1| hypothetical protein EUBHAL_01303 [Eubacterium hallii DSM 3353] Length = 414 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 144/343 (41%), Positives = 226/343 (65%), Gaps = 1/343 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ + + EK I+++V++ + DS+ A +G + ++V ++ +TGDIS++ Sbjct: 3 ELIDALNQLQKEKHIEKEVIMQAIEDSLVAACNRDFGKNAIVKVNMDRDTGDISVYVEKT 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL A+ +IG VV+ + P +FGR+A Q A+ VI+QK++E ER Sbjct: 63 VVEEVEDPATEISLADAKMIRFHYEIGDVVNIEVTPKNFGRIAAQHARSVIVQKIKEEER 122 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYI 186 + F K +I++G V+R N+ V L +D V+ E + E +P DR+K YI Sbjct: 123 RVVFEHFAHKEKDIVTGVVQRYNGKNISVSLDDKTDAVLTEKEQVKGEVFKPTDRIKLYI 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V+ +GP++L+SRTHP+ + +LF EV E+Y+G V++K+++R+ GSR K+AV S+D Sbjct: 183 VEVKDTNKGPKILVSRTHPELVKRLFEKEVAEVYDGTVEIKSIAREAGSRTKIAVASNDP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 ++DPVGACVG+ G+RV A+V++LR EKIDI+ W+ D A + NAL P+ V V +DE+ Sbjct: 243 NVDPVGACVGINGARVNAIVSDLRGEKIDIIEWNDDPAVLIENALSPSNVVSVDVDEEEK 302 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTG+ IDI +E + + Sbjct: 303 SARVVVPDYQLSLAIGKEGQNARLAAKLTGYKIDIKSESQAAE 345 >gi|322373936|ref|ZP_08048471.1| transcription termination factor NusA [Streptococcus sp. C150] gi|321277308|gb|EFX54378.1| transcription termination factor NusA [Streptococcus sp. C150] Length = 396 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 130/349 (37%), Positives = 205/349 (58%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG VE N +TGD ++ + E Sbjct: 4 EMLEAFRVLEEEKHINKDDIIEAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 304 AEVDYVLFDENDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 352 >gi|237743254|ref|ZP_04573735.1| transcription elongation factor NusA [Fusobacterium sp. 7_1] gi|256028609|ref|ZP_05442443.1| transcription elongation factor NusA [Fusobacterium sp. D11] gi|260495123|ref|ZP_05815252.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33] gi|289766527|ref|ZP_06525905.1| transcription elongation factor NusA [Fusobacterium sp. D11] gi|229433033|gb|EEO43245.1| transcription elongation factor NusA [Fusobacterium sp. 7_1] gi|260197566|gb|EEW95084.1| transcription termination factor NusA [Fusobacterium sp. 3_1_33] gi|289718082|gb|EFD82094.1| transcription elongation factor NusA [Fusobacterium sp. D11] Length = 359 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 126/344 (36%), Positives = 213/344 (61%), Gaps = 4/344 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI Sbjct: 1 MKAKDSKNFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVTVDRENGDI 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F VV +++ + +ISL+ A+ + IG ++ + +F R AVQ+ KQ++ Sbjct: 61 KVFASKTVVAADDLLDPNEEISLEDAKKIKKRVKIGDILKFEVDCENFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGVELILPPAEQSVSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYVLSVEKTSKFPKILISRRNEGLLRKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+ +ID +GAC+G +G+R++ +V EL E+IDIV W P FV L PA+V Sbjct: 241 KVAVYSAVPNIDTIGACIGQKGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVE 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDI 343 >gi|15604816|ref|NP_219600.1| transcription elongation factor NusA [Chlamydia trachomatis D/UW-3/CX] gi|76788811|ref|YP_327897.1| transcription elongation factor NusA [Chlamydia trachomatis A/HAR-13] gi|237802529|ref|YP_002887723.1| transcription elongation factor NusA [Chlamydia trachomatis B/Jali20/OT] gi|255310899|ref|ZP_05353469.1| transcription elongation factor NusA [Chlamydia trachomatis 6276] gi|255317199|ref|ZP_05358445.1| transcription elongation factor NusA [Chlamydia trachomatis 6276s] gi|255506672|ref|ZP_05382311.1| transcription elongation factor NusA [Chlamydia trachomatis D(s)2923] gi|3328493|gb|AAC67688.1| Transcription antitermination factor [Chlamydia trachomatis D/UW-3/CX] gi|76167341|gb|AAX50349.1| N utilization substance protein A [Chlamydia trachomatis A/HAR-13] gi|231273763|emb|CAX10544.1| N utilization substance protein A [Chlamydia trachomatis B/Jali20/OT] gi|289525141|emb|CBJ14613.1| N utilization substance protein A [Chlamydia trachomatis Sweden2] gi|296434685|gb|ADH16863.1| transcription elongation factor NusA [Chlamydia trachomatis E/150] gi|296435614|gb|ADH17788.1| transcription elongation factor NusA [Chlamydia trachomatis G/9768] gi|296436537|gb|ADH18707.1| transcription elongation factor NusA [Chlamydia trachomatis G/11222] gi|296437474|gb|ADH19635.1| transcription elongation factor NusA [Chlamydia trachomatis G/11074] gi|296438402|gb|ADH20555.1| transcription elongation factor NusA [Chlamydia trachomatis E/11023] gi|297139973|gb|ADH96731.1| transcription elongation factor NusA [Chlamydia trachomatis G/9301] Length = 434 Score = 306 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 235/428 (54%), Gaps = 9/428 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITL 424 EG Sbjct: 422 GEGKVDEK 429 >gi|288924202|ref|ZP_06418238.1| NusA antitermination factor [Frankia sp. EUN1f] gi|288344449|gb|EFC78942.1| NusA antitermination factor [Frankia sp. EUN1f] Length = 362 Score = 306 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 139/349 (39%), Positives = 200/349 (57%), Gaps = 28/349 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + EK I D ++ + ++ A + G+ D RV I+ +G++++F Sbjct: 6 AALRGIEREKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF------- 58 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Sbjct: 59 -------------ARESAPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+ Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYV 162 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S Sbjct: 163 VHVSRGAHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAP 222 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 ++P GAC+G GSRV+AV+ EL EKIDIV WS D A FV +AL PA V+KV + D Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPAAFVGSALSPARVSKVEVTDLAN 282 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E + +R Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGNPDRADQ 331 >gi|86742245|ref|YP_482645.1| NusA antitermination factor [Frankia sp. CcI3] gi|86569107|gb|ABD12916.1| NusA antitermination factor [Frankia sp. CcI3] Length = 365 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 141/340 (41%), Positives = 198/340 (58%), Gaps = 28/340 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + EK I D ++ M ++ A G+ D RV I+ TGD+S+ Sbjct: 6 AALRGIEREKDIAFDTLVQAMETALLTAYHHTAGSAQDARVVIDRTTGDVSVL------- 58 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 AR++ P G P DFGR+A +AKQVI+Q++REA+++ Sbjct: 59 -------------AREQGPD---GTSREYDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 Y ++ D+ EI+SG V+ E V+V+LG +GV+ E + E L GDR+K Y+ Sbjct: 103 YGQYADREHEIVSGVVQHHEQRAGSRVVLVNLGTVEGVLPPAEQVPGERLEHGDRIKCYV 162 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S + Sbjct: 163 VHVARGPHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSRVA 222 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 ++P GAC+G GSRV+AV+ ELR EKIDIV WS D ATFV +AL PA V +V + D Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELRGEKIDIVDWSADPATFVGSALSPARVARVEVTDPAS 282 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDT 322 >gi|227514704|ref|ZP_03944753.1| transcription termination factor NusA [Lactobacillus fermentum ATCC 14931] gi|227086908|gb|EEI22220.1| transcription termination factor NusA [Lactobacillus fermentum ATCC 14931] gi|299783112|gb|ADJ41110.1| Transcription termination factor NusA [Lactobacillus fermentum CECT 5716] Length = 408 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 142/391 (36%), Positives = 219/391 (56%), Gaps = 25/391 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 +R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++ Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 + ER+ + ++ +++ G V R + + V+LG + + + + + E+ R DR+ Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185 Query: 183 KSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+ Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305 Query: 301 LDEDV---------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE+ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I Sbjct: 306 FDENNGEVDEPASVDENGRKHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDE 370 DI + + + + + Q E Sbjct: 366 DIKSSSQAAALEEAQPEPAAEVVEQPTQAPE 396 >gi|237804446|ref|YP_002888600.1| transcription elongation factor NusA [Chlamydia trachomatis B/TZ1A828/OT] gi|231272746|emb|CAX09650.1| N utilization substance protein A [Chlamydia trachomatis B/TZ1A828/OT] Length = 434 Score = 306 bits (784), Expect = 6e-81, Method: Composition-based stats. Identities = 146/427 (34%), Positives = 235/427 (55%), Gaps = 9/427 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L+ I D + EK I R ++ + +++ AA+ +++ V INP TGDI +F Sbjct: 2 NKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++VE+ +N + +I L AR+ DP IG + P FGR+A +A+Q+I QK+R A Sbjct: 62 KQIVEKCQNPSKEIPLDEAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ + EIISG VK G N++VDLG +G++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR HP+F+ +LF EVPE+ G V++ ++R+ G R K+AV S Sbjct: 182 LLYEVQESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 S+ D VGA VGMRGSR++ ++ EL DEKID+V +SP S + N L P + K+ + E Sbjct: 242 SNPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I +IV + IG+RG N RL SQ+ G+ +++ E + + + +F Sbjct: 302 DDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + ++ +I L G+ + ++ SE+AS+ G E A +I + +Y Sbjct: 362 PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDIT 423 EG Sbjct: 422 GEGKVDE 428 >gi|295102730|emb|CBL00275.1| transcription termination factor NusA [Faecalibacterium prausnitzii L2-6] Length = 373 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 211/354 (59%), Gaps = 8/354 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGD 59 M +AN E + + +E+ I + ++ + +I A + Y + VEI+P TG Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDHVMVEIDPNTGK 59 Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 ++ + +VV E+ + +I + A+ S +G V PL DFGR+A Q+AK V Sbjct: 60 FNVALIQDVVADEDWYDEHSEIGITEAQHIRKSYQVGDRVVTPLKTKDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRE 174 I Q +REAER +Q E + + +I+ TV RV+ IV DLG + ++ R+E + E Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPRNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G ++ YI DV +RGP+V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G Sbjct: 180 VYTEGQMLQVYIVDVVASERGPRVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D++++PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDANVNPVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V KV L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGY 353 >gi|159036964|ref|YP_001536217.1| transcription elongation factor NusA [Salinispora arenicola CNS-205] gi|157915799|gb|ABV97226.1| NusA antitermination factor [Salinispora arenicola CNS-205] Length = 347 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 138/346 (39%), Positives = 199/346 (57%), Gaps = 27/346 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ +TG Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTG----------- 53 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++L A++ D G V P DFGR+A +AKQVI+Q++REA + Sbjct: 54 ---------VALVYAQEMDADG--GVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTA 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 + ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D Sbjct: 223 AGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDVEPARP 328 >gi|187778986|ref|ZP_02995459.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC 15579] gi|187772611|gb|EDU36413.1| hypothetical protein CLOSPO_02581 [Clostridium sporogenes ATCC 15579] Length = 454 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 159/436 (36%), Positives = 266/436 (61%), Gaps = 6/436 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----GTMSDIRVEINPETGDIS 61 E ++ + EK I D++ + + D++ A + Y G+ ++++V +N E+G+I Sbjct: 2 NQEFVEALKEIVKEKGISADLLFTTIEDALVTAYKKNYAKQGGSTNNVKVIMNRESGEIK 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ +VVE VE +ISL+ A++ DP+ ++ +++ + P FGR+A Q+AKQV+IQ+ Sbjct: 62 VYAQKKVVELVEEEIEEISLEDAKEIDPNYELEDIINIEVTPKKFGRIAAQAAKQVVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E ER Y E+ +K +I++GTV R + GN+++++G S+ V+ +E I E R ++ Sbjct: 122 IKEEERRIVYNEYIEKEEDILTGTVLRKDKGNILINVGKSEAVLGPNEQIPGEQFRFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V+ +GPQVL+SRTHP + +LF +EVPEIYNG+V++K+++R+ GSR K+AV Sbjct: 182 IKLYVVEVKNTTKGPQVLISRTHPGLVKRLFELEVPEIYNGVVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D ++DP+GACVG +G RVQ +V EL++EKIDI+ WS + NAL PA V V + Sbjct: 242 YSNDEAVDPMGACVGPKGVRVQNIVNELKNEKIDIIKWSKFPDELISNALSPAKVIDVTI 301 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ + + +E Sbjct: 302 VDEENKAARVVVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSQAEKEEILNLSETKD 361 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + D+ + + E + E I E S+ ++E E+ +A E + Sbjct: 362 EVILENKEDDKEEKIDLYEEMDSMVEDTKENIKEEISVSENNQEVDSEL-EKAMEEVFNT 420 Query: 421 DITLQKKIRELGVSEE 436 + L+K I +E Sbjct: 421 EDKLEKDINLFEDDDE 436 >gi|294101966|ref|YP_003553824.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261] gi|293616946|gb|ADE57100.1| NusA antitermination factor [Aminobacterium colombiense DSM 12261] Length = 362 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 131/354 (37%), Positives = 223/354 (62%), Gaps = 3/354 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + E+ + +V+ S + ++ A + G ++ V I+ E+G++S++ + Sbjct: 6 DFVRALKQLTAERGLTSEVIASSLEAALISAYKKYQGGDRNVEVHIDLESGNVSIYEVRL 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV+EV+N QISL + +++ V P +FGR+A Q+A+QVIIQK+++AE Sbjct: 66 VVDEVDNPDAQISLIDVQKLGFTDVEVNEYVRIEKNPENFGRIAAQTARQVIIQKLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R + EF +VG++++G + + E V+V L ++ ++ ++E + E PG+R+K Y Sbjct: 126 RQIIFEEFSGRVGDLVNGIIFKSENDQVLVRLNDRTEAILPKEERVINEKYTPGERLKFY 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + KL +EVPEI GI+++K++ R+ G+RAK+AV + D Sbjct: 186 LLDVRQTTRGPRIVVSRTHPGLLRKLLELEVPEIQEGIIEIKSIVREAGTRAKVAVQTLD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++DPVGACVG G+R++++ EL EKID+++WS D FV N+L PA + K+ + E Sbjct: 246 INVDPVGACVGNNGARIKSISQELSGEKIDVIIWSSDPLIFVRNSLSPAKIVKIEPILEQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + V +QLSLAIG+ GQNVRLA++LT W IDI E + + +D + Sbjct: 306 DKAVTVYARPDQLSLAIGKAGQNVRLAARLTSWKIDIKALEPERMPTLQDIFQD 359 >gi|237742964|ref|ZP_04573445.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13] gi|256846936|ref|ZP_05552390.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2] gi|229430612|gb|EEO40824.1| transcription elongation factor NusA [Fusobacterium sp. 4_1_13] gi|256717734|gb|EEU31293.1| transcription termination factor NusA [Fusobacterium sp. 3_1_36A2] Length = 357 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 129/357 (36%), Positives = 219/357 (61%), Gaps = 4/357 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVFASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDNIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSLSDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ +++ Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDNETLKEEEN 356 >gi|312865489|ref|ZP_07725716.1| transcription termination factor NusA [Streptococcus downei F0415] gi|311099007|gb|EFQ57224.1| transcription termination factor NusA [Streptococcus downei F0415] Length = 429 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 135/408 (33%), Positives = 222/408 (54%), Gaps = 15/408 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID++ ++ + +S++ A + YG VE N +TGD ++ + E Sbjct: 4 EMLEAFRVLEEEKHIDKNDIIDAVTESLKSAYKRRYGQSDSCEVEFNEKTGDFQVYSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLADALKISSAYELGDKIRFEESVKEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSIEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPRGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ VV++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKVVSKFHPVRLDPKSGLAVPVEENIDVIQWEEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D++ V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDYVIFDDENSKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSATEYETMEA 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + + + EI+ E + +++ +IE Sbjct: 364 QAEEAYEADDLAEESSSEILESAEGLEEVQEADQIDAEAQDLDEAIES 411 >gi|315652148|ref|ZP_07905146.1| transcription termination factor NusA [Eubacterium saburreum DSM 3986] gi|315485640|gb|EFU76024.1| transcription termination factor NusA [Eubacterium saburreum DSM 3986] Length = 386 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 147/358 (41%), Positives = 227/358 (63%), Gaps = 6/358 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV------E 73 K+I + +L + +S+ A ++ +GT +++V +NP T D S+ + EVVE + E Sbjct: 16 KNISKAAILEAIENSLISACKNSFGTADNVKVSVNPTTCDYSIIQAKEVVESLGNKPSLE 75 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + + Sbjct: 76 DRATKISLAEARMQNPNLGVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + K +I+SG V R N+ ++LG D V+ E + E+L+ GDR+K ++ +V+ Sbjct: 136 YYMKERDIVSGVVTRFMGKNIAINLGKIDAVLAESEQVKGEDLKLGDRLKVFVLEVKDNP 195 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++ +SRTHP+F+ +LF +VPEI +G+V++K+++R+ GSR K+AV S + IDPVGA Sbjct: 196 KGPRISVSRTHPEFVKRLFEAQVPEIRDGVVEIKSIAREAGSRTKIAVCSHEPDIDPVGA 255 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVG+ G RV AVV ELRDEK+DIV W + A + NAL PA V VV DE+ +VIVP Sbjct: 256 CVGVDGVRVNAVVEELRDEKVDIVNWDDNPAYLIENALSPAKVIAVVADEETKEADVIVP 315 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 QLSLAIG+ GQN RLA++LTG+ IDI +E + D + ++ + +E Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQARELGVFDSLDGSENMSANTDNNED 373 >gi|302338537|ref|YP_003803743.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM 11293] gi|301635722|gb|ADK81149.1| transcription termination factor NusA [Spirochaeta smaragdinae DSM 11293] Length = 496 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 152/450 (33%), Positives = 248/450 (55%), Gaps = 19/450 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + ++ ++ I ++V + D + A + +GT + V + + ++++F E+ Sbjct: 5 LAEAIRSLVQDRGISEELVRKTIEDFLLAAYKRKFGTTENAVVRFSEDGNEVAIFAAKEI 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE VE+ ++ LK A + +IG + + P +F RVAVQSAKQ Q +RE ++D Sbjct: 65 VENVEDPVTEMPLKEALTYNEECEIGDELLIEINPKEFDRVAVQSAKQKAKQTLREIQKD 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y EFK+K GE++ G +R GN+ VDLG +G++ R RE RP DR+K+ IY+ Sbjct: 125 TLYSEFKEKEGEMVIGYYQRERNGNIFVDLGKIEGILPRRYQSPREVYRPNDRIKALIYE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + G Q++LSRTH F+ ++F +EVPE+Y+ V++ + R+PG R K+AV+S+ + Sbjct: 185 VSKSPSGLQIVLSRTHTDFVKRIFELEVPEVYDKTVEIFKIVREPGYRTKIAVYSNRDDV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DPVGACVGM+G R+QAVV EL EKIDI+ + D+ +F+ NAL PA V VV+ DE + Sbjct: 245 DPVGACVGMKGVRIQAVVRELEGEKIDILKYDIDARSFIKNALSPAEVQNVVILDEAKRQ 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT-------- 359 +V + QLSLAIG++G NVRLA++L W ID+ T E+ ++ Sbjct: 305 ALAVVEENQLSLAIGKQGLNVRLANRLVDWNIDVKTIEQFEEMDLSAETKKELNALFNDV 364 Query: 360 ----------QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + + E ++ +L+ G +E L + +++ +EG + I Sbjct: 365 EEDDENVEEISRISELPGISERLSEILMQNGVELIETLVGLSGEDLSRLEGVTVQDVETI 424 Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCS 439 Q E ++ I+ ++ I + E L Sbjct: 425 QNIISENVDIIEEQEEEAIAQTESHEHLAE 454 >gi|184155206|ref|YP_001843546.1| transcription termination-antitermination factor NusA [Lactobacillus fermentum IFO 3956] gi|260662294|ref|ZP_05863190.1| transcription termination factor NusA [Lactobacillus fermentum 28-3-CHN] gi|183226550|dbj|BAG27066.1| transcription termination-antitermination factor NusA [Lactobacillus fermentum IFO 3956] gi|260553677|gb|EEX26569.1| transcription termination factor NusA [Lactobacillus fermentum 28-3-CHN] Length = 408 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 142/391 (36%), Positives = 219/391 (56%), Gaps = 25/391 (6%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLF 63 +R+ELL D + EK I ++V++ + D++ A + Y +++ VEI+ TG+ ++ Sbjct: 6 DRVELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVY 65 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVEEV N +ISL A + ++G + + + P +FGR+A Q+AK V++QK+R Sbjct: 66 AAKTVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLR 125 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 + ER+ + ++ +++ G V R + + V+LG + + + + + E+ R DR+ Sbjct: 126 DEERNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRI 185 Query: 183 KSYIYDVRREQ--RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + Y+ V + RGP V +SRT P + +LF EVPEI GIV+VK + R+ G RAK+A Sbjct: 186 QVYVTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFS D ++DPVG CVG RG+RVQA+V +L E IDIV + F+ NAL PA V V+ Sbjct: 246 VFSRDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVL 305 Query: 301 LDEDV---------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 DE+ VIVP +QLSLAIG+RGQNVRLA+QLTG+ I Sbjct: 306 FDENNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKI 365 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDE 370 DI + + + + + Q E Sbjct: 366 DIKSSSQAAALEEAQPEPAAEVVEQPTQAPE 396 >gi|256847048|ref|ZP_05552494.1| transcription termination factor NusA [Lactobacillus coleohominis 101-4-CHN] gi|256715712|gb|EEU30687.1| transcription termination factor NusA [Lactobacillus coleohominis 101-4-CHN] Length = 385 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 142/368 (38%), Positives = 214/368 (58%), Gaps = 22/368 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFR 64 + ELL D + EK I +DV+++ + D++ A + Y +++ V+I+ +TGD +F Sbjct: 7 KAELLGAMDVLEKEKGIKKDVIVNALTDALANAYQKNYDDNNANVEVKIDEQTGDFKVFA 66 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +VV+EV N QISL+ A +IG + + P DFGR+A Q+AK V++Q++RE Sbjct: 67 TKKVVDEVTNPIEQISLRDAMHVSHGYEIGDDFKEEVTPNDFGRIAAQTAKSVVLQQLRE 126 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 ER Y ++ +++ G V R + + ++L G + + + + + E+ R D V+ Sbjct: 127 EERRIVYEKYNKLKDDLVDGEVAREDSRFIYINLTGGVEAAMNKHDQMPNEHYRTHDHVQ 186 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V ++ +GPQV +SRT P + +LF EVPEI GIV++K + R+ G RAK+AVFS Sbjct: 187 VYVTRVLKDTKGPQVFVSRTAPDLLKRLFEKEVPEISQGIVEIKGIVREAGDRAKVAVFS 246 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DS++D VG CVG RG+RVQ +V +L E IDIV + + F+ NAL PA V V+ DE Sbjct: 247 RDSNVDAVGTCVGPRGARVQTIVNQLGGENIDIVKFEEEPEDFIRNALNPAEVKAVIFDE 306 Query: 304 DV--------------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + VIVP +QLSLAIG+RGQNVRLA+QLTG+ IDI Sbjct: 307 NNGEIEENQPKVDGEESEPRVHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDIKP 366 Query: 344 EEEDSINR 351 E + Sbjct: 367 LSEVDTDD 374 >gi|331002483|ref|ZP_08326001.1| transcription termination factor NusA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410299|gb|EGG89733.1| transcription termination factor NusA [Lachnospiraceae oral taxon 107 str. F0167] Length = 395 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 227/361 (62%), Gaps = 6/361 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE------VE 73 K+I + +L + +S+ A ++ +GT +++V +NP+T D S+ + EVVE +E Sbjct: 16 KNISKAAILEAIENSLISACKNNFGTADNVKVSVNPDTCDYSIIQAKEVVETLGNKPTIE 75 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + +ISL AR ++P++ +G V P+ +FGR+A AK VI+QK+RE ER + + Sbjct: 76 DKATKISLAEARMKNPNLSVGDTVLVPVISKEFGRIAAGVAKNVILQKIREEERKVIFND 135 Query: 134 FKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + K +I+SG V R N+ ++LG D V+ E + E L+ GDR+K ++ +V+ Sbjct: 136 YYMKERDIVSGAVTRFMGKNIAINLGRIDAVLAESEQVKSEELKLGDRLKVFVLEVKDNP 195 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++ +SRTHP+F+ +LF EVPEI +G+V++K++SR+ GSR K+AVFS ++ IDPVGA Sbjct: 196 KGPRISVSRTHPEFVKRLFESEVPEIRDGVVEIKSISREAGSRTKIAVFSHEADIDPVGA 255 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVP 313 CVG+ G RV AVV ELR EK+DIV W + + NAL PA V VV DE+ +VIVP Sbjct: 256 CVGVDGVRVNAVVEELRGEKVDIVNWDDNPGYLIENALSPAKVIAVVADEETKEADVIVP 315 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 QLSLAIG+ GQN RLA++LTG+ IDI +E + D + + + VDE Sbjct: 316 DYQLSLAIGKEGQNARLAARLTGYKIDIKSESQARELGVFDSLDGSDDISDDMPVDEEYT 375 Query: 374 H 374 Sbjct: 376 E 376 >gi|254302278|ref|ZP_04969636.1| N utilization substance protein A [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322470|gb|EDK87720.1| N utilization substance protein A [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 357 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 130/357 (36%), Positives = 219/357 (61%), Gaps = 4/357 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRENGDI 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F +V +E+ + +ISL+ A+ I +G + + DF R AVQ+ KQ++ Sbjct: 61 KVFASKIIVNTDELLDPNKEISLEDAKQIKKRIKVGDTLKFEVNCEDFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSVSDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYVLSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI E +++ +++ Sbjct: 301 NVTILED-GTARVLVAPSQLSLAIGKNGQNARLAARLTGMRVDIKVIENETLKEEEN 356 >gi|19705318|ref|NP_602813.1| transcription elongation factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328566|ref|ZP_06871085.1| transcription termination factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713289|gb|AAL94112.1| N utilization substance protein A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154375|gb|EFG95174.1| transcription termination factor NusA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 357 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 219/357 (61%), Gaps = 4/357 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRENGDI 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F +V +++ + +ISL+ A+ + +G + + DF R AVQ+ KQ++ Sbjct: 61 KVFASKIIVNADDLLDPNKEISLEDAKKIKKRVKVGDTLKFEVNCEDFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPAEQSISDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSEVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVIEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ +++ Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDSEALKEEEN 356 >gi|238063380|ref|ZP_04608089.1| transcription elongation factor nusA [Micromonospora sp. ATCC 39149] gi|237885191|gb|EEP74019.1| transcription elongation factor nusA [Micromonospora sp. ATCC 39149] Length = 347 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 134/358 (37%), Positives = 200/358 (55%), Gaps = 27/358 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G S RVEI+ + G ++ Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAESHARVEIDRKNGAALVY------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D + V P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQELDDDGTV--VREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+R++ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARSEKGIVSVDLGKLEGVLPQSEQVPGERYTHGERIRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGMRGPQITLSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSAV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++ GAC+G G RV+AV++EL EKIDI+ WS D ATFV NAL PA +V +D Sbjct: 223 PGVNAKGACIGPMGQRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + + + Sbjct: 283 TRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEQATTAARSAADHVREP 340 >gi|294784277|ref|ZP_06749572.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27] gi|294488143|gb|EFG35494.1| transcription termination factor NusA [Fusobacterium sp. 3_1_27] Length = 357 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 129/357 (36%), Positives = 219/357 (61%), Gaps = 4/357 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ GDI Sbjct: 1 MKAKDSKNFLEALDELEREKGISKESVLEAIELALLAAYKKNYGEDENVEVVVDRANGDI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +F VV+ + + +ISL+ A+ + IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVFASKTVVDADNLLDPNEEISLEDAKQIKKRVKIGDVLKFEVDCENFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ + +FK++ I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIFNKFKEREDSIVTGIIRRIDNRKNIFIEIDGIELILPPVEQSLSDVYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K YI V + + P++L+SR + + KLF +E+PEI +GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVYILSVEKTNKFPKILISRKNEGLLKKLFEIEIPEITSGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+ +ID VGAC+G RG+R++ +V EL E+IDIV W P FV L PA+V+ Sbjct: 241 KVAVYSAVPNIDTVGACIGQRGARIKNIVDELNGERIDIVEWKPVVEEFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + ED G V+V QLSLAIG+ GQN RLA++LTG +DI + +++ +++ Sbjct: 301 NVTILED-GTARVLVEPSQLSLAIGKNGQNARLAARLTGMRVDIKVIDNETLKEEEN 356 >gi|256379832|ref|YP_003103492.1| transcription elongation factor NusA [Actinosynnema mirum DSM 43827] gi|255924135|gb|ACU39646.1| NusA antitermination factor [Actinosynnema mirum DSM 43827] Length = 337 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 137/347 (39%), Positives = 198/347 (57%), Gaps = 27/347 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I D VL + ++ A + G RVEI+ ++G + + Sbjct: 5 IAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A+D P + D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 59 --------------AQDLGPDGVVTEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF K GEII G V+R N V+V +G+++GV+ E + E + G R+K Y Sbjct: 103 TFGEFSAKEGEIIGGVVQRDARANARGMVVVQVGDTEGVLPPAEQVPGEEYKHGARIKCY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+K+AV +S Sbjct: 163 VVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 ++ GAC+G G+RV+ V++EL EKIDI+ S D ATFV NAL PA V V + DE Sbjct: 223 PGVNAKGACIGPMGARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEAVQKD 329 >gi|269127538|ref|YP_003300908.1| NusA antitermination factor [Thermomonospora curvata DSM 43183] gi|268312496|gb|ACY98870.1| NusA antitermination factor [Thermomonospora curvata DSM 43183] Length = 351 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 135/342 (39%), Positives = 199/342 (58%), Gaps = 24/342 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + ++ EK I ++V + D++ A G RVE++ +TG ++++ Sbjct: 1 MAALRSLESEKDISLELVAQAIEDALLIAYHRTEGAAPRARVELDRKTGHVTVW------ 54 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D ++ D P DF R+A +AKQVI+QK+R+AE + Sbjct: 55 --------------AAETDDEGNVLREYDD--TPEDFSRIAATTAKQVILQKLRDAEDEV 98 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G+I+SG +++ + NV+VDLG + ++ E + E+ GDR+++Y+ Sbjct: 99 TFGEYAGREGDIVSGVIQQGKDPRNVLVDLGRIEAILPPSEQVPGESYEHGDRIRAYVVQ 158 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 159 VRKGHRGPSVQLSRTHPNLVRKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRKPGV 218 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G GSRV+ V+ ELR EKIDIV WS D A FV NAL PA V+ V +DE Sbjct: 219 NAKGACIGPMGSRVRNVMHELRGEKIDIVDWSEDPAEFVGNALSPARVSSVQVIDEAART 278 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 279 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEVEQ 320 >gi|257465970|ref|ZP_05630281.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] gi|315917126|ref|ZP_07913366.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] gi|313691001|gb|EFS27836.1| transcription elongation factor NusA [Fusobacterium gonidiaformans ATCC 25563] Length = 353 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 209/344 (60%), Gaps = 3/344 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + VV E++ + +ISL+ A+ +G V + F R A+Q+ KQ++ Sbjct: 61 KVYEVKTVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344 >gi|228476580|ref|ZP_04061262.1| transcription termination factor NusA [Streptococcus salivarius SK126] gi|228251775|gb|EEK10840.1| transcription termination factor NusA [Streptococcus salivarius SK126] Length = 399 Score = 304 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 214/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD ++ + E Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363 Query: 353 KDFNERTQFFMQAINVDE 370 + T+ + I ++ Sbjct: 364 EKAEAATEEVVDEIVAED 381 >gi|55820434|ref|YP_138876.1| transcription elongation factor NusA [Streptococcus thermophilus LMG 18311] gi|55822318|ref|YP_140759.1| transcription elongation factor NusA [Streptococcus thermophilus CNRZ1066] gi|55736419|gb|AAV60061.1| transcription termination-antitermination factor [Streptococcus thermophilus LMG 18311] gi|55738303|gb|AAV61944.1| transcription termination-antitermination factor [Streptococcus thermophilus CNRZ1066] Length = 395 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 214/388 (55%), Gaps = 15/388 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + E Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEG 380 + ++ I + + E Sbjct: 364 EKAEAEVDEVVEEIVAEATPVDVSTEEA 391 >gi|148543928|ref|YP_001271298.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016] gi|184153324|ref|YP_001841665.1| transcription termination-antitermination factor [Lactobacillus reuteri JCM 1112] gi|227364837|ref|ZP_03848884.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3] gi|325682537|ref|ZP_08162054.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A] gi|148530962|gb|ABQ82961.1| NusA antitermination factor [Lactobacillus reuteri DSM 20016] gi|183224668|dbj|BAG25185.1| transcription termination-antitermination factor [Lactobacillus reuteri JCM 1112] gi|227070100|gb|EEI08476.1| transcription termination factor NusA [Lactobacillus reuteri MM2-3] gi|324978376|gb|EGC15326.1| N utilization substance protein A [Lactobacillus reuteri MM4-1A] Length = 395 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 141/375 (37%), Positives = 217/375 (57%), Gaps = 27/375 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65 Query: 66 LEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 Q++RE ER Y +K EII+G V R + VDLG +G + + + E+ Sbjct: 126 QRLREEERKIIYDRYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAKFIANALNPAEVLD 305 Query: 299 VVLDED-------------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V+ +E+ V+VP QLSLAIG+RGQN RLA++LT + I Sbjct: 306 VIFNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKI 365 Query: 340 DIITEEEDSINRQKD 354 DI +E E + N Q+ Sbjct: 366 DIKSESEMAENDQES 380 >gi|325847934|ref|ZP_08170105.1| transcription termination factor NusA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480803|gb|EGC83857.1| transcription termination factor NusA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 410 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 144/410 (35%), Positives = 242/410 (59%), Gaps = 1/410 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKEFIIALEELEKSKNVDKKIILEALEKALVKSYQKNYENNENVDVNIDEETGEIEVYSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +IS AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A Sbjct: 62 KNVVDEVNDPIAEISKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ D+ EII+G V+R + NV ++L +G+I E + E R+K Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D Sbjct: 182 IKDVKNTTKEPQIILSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID +GAC+G +GSRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++ Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q + +E + Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDKLDQDEIDEILGLNEEE 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + E I + VE+ +I ++ ++ E ++ E Sbjct: 362 DEIIENIDGEI-ENSLDQVEDETDFIEDDIENLSEDLDQIIKEDIEKSEE 410 >gi|158313032|ref|YP_001505540.1| NusA antitermination factor [Frankia sp. EAN1pec] gi|158108437|gb|ABW10634.1| NusA antitermination factor [Frankia sp. EAN1pec] Length = 361 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 139/350 (39%), Positives = 202/350 (57%), Gaps = 28/350 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + EK I D ++ + ++ A + G+ D RV I+ +G++++F Sbjct: 6 AALRGIEREKEIAFDTLVEAIETALLTAYKHTTGSADDARVVIDRTSGEVAVF------- 58 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Sbjct: 59 -------------ARESGPD---GTSREWDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+ Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSRVVLVDLGTVEGVLPPAEQVPGERLEHGDRIKCYV 162 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R K+AV S + Sbjct: 163 VHVARGMHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRTKIAVRSKAA 222 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 ++P GAC+G GSRV+AV+ EL EKIDIV WS D A+FV +AL PA V++V + D Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPASFVGSALSPARVSRVEVTDLAS 282 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E S R + Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGSEPRAERP 332 >gi|317125351|ref|YP_004099463.1| NusA antitermination factor [Intrasporangium calvum DSM 43043] gi|315589439|gb|ADU48736.1| NusA antitermination factor [Intrasporangium calvum DSM 43043] Length = 339 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 131/339 (38%), Positives = 200/339 (58%), Gaps = 13/339 (3%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I DV++ + ++ A G+ RVE++ +TG + ++ Sbjct: 5 LAALRALERERGISLDVLIPAIEQALLVAYHRTEGSYRSARVELDRKTGHVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EE + + + + +P + P+ FGR+A +A+QVI+Q++R+ E ++ Sbjct: 61 EEGDLLPAEEG-ERPQRGEPGPEFDDT------PVGFGRIAASTARQVIVQRLRDLEDEQ 113 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK + G++ISG +++ + NV+VD G +G++ E + E G+R++ Y+ Sbjct: 114 ILGDFKGREGDVISGVIQQSQDPRNVLVDFGAVEGILPLAEQVPGERYVHGERLRCYVVS 173 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+R RGPQV LSRTHP + LF EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 174 VKRGPRGPQVGLSRTHPNLVRTLFKFEVPEIADGTVEIAALARESGHRTKIAVHSKVPGV 233 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV+TELR EKIDIV +S D ATFV AL PA V V + D Sbjct: 234 NAKGACIGPMGARVRAVMTELRGEKIDIVDYSEDPATFVAAALSPARVQSVEIVDAAART 293 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 294 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTE 332 >gi|256544696|ref|ZP_05472068.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC 51170] gi|256399585|gb|EEU13190.1| transcription termination factor NusA [Anaerococcus vaginalis ATCC 51170] Length = 415 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 140/421 (33%), Positives = 242/421 (57%), Gaps = 7/421 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKEFIIALEELEKTKNVDKRIILEALEKALVKSYQKNYDNNENVDVSIDDETGEIEVYSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VVEEV +IS A++ DP +D+G + + P +FGRVA Q+A+ ++IQK+R+A Sbjct: 62 KNVVEEVNEPIAEISKTKAKEIDPKLDLGDICRVKIAPKNFGRVAAQTARNIVIQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ D+ EII+G V+R + N+ ++L +G+I E + E P R+K Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKFNIYINLDKIEGIIPLKEQVENETYTPNQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +V+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D Sbjct: 182 IKEVKNTTKEPQIILSRKDKALVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID +GAC+G +GSRV ++V EL+ EKIDI+ + D F+ N+L PA + +V +++ Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKVFIKNSLSPAEINEVYINDKK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE + + Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDQL-------SQEEIDEI 354 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 + ++E L E++ + ++ D+E ++ + ++ Sbjct: 355 LGLNEQTDKDLENIEENSKEDILEDENAQQGENLDIDKENIEDLSNDLDQIIKEDIEESD 414 Query: 426 K 426 + Sbjct: 415 E 415 >gi|302872115|ref|YP_003840751.1| transcription termination factor NusA [Caldicellulosiruptor obsidiansis OB47] gi|302574974|gb|ADL42765.1| transcription termination factor NusA [Caldicellulosiruptor obsidiansis OB47] Length = 356 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 133/347 (38%), Positives = 209/347 (60%), Gaps = 8/347 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I+RD + SV+ ++ A + + G S+++V I PE G Sbjct: 7 TLDFQELFSAIDELEREYKIERDYIYSVLESALLTAYKQVKGIKDKNLSNVKVSIEPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +ISL+ A+ D +G +V +P F R A + +Q + Sbjct: 67 SVKIYEYRKVVENVKDRKSEISLEDAQKIDKRYKVGDIVVIEVPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE + + ++ KV I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKRKSIIFEDYSSKVDNIVTGIIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K YI +V+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGVMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + L+ + V+VP QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGKGGQNARLAAKLTGWKIDI 353 >gi|145593916|ref|YP_001158213.1| transcription elongation factor NusA [Salinispora tropica CNB-440] gi|145303253|gb|ABP53835.1| transcription termination factor NusA [Salinispora tropica CNB-440] Length = 347 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 137/354 (38%), Positives = 198/354 (55%), Gaps = 27/354 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ I D +L+ + ++ A R G RVEI+ +TG +F Sbjct: 5 LAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVF------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ +P G V P DFGR+A +AKQVI+Q++REA + Sbjct: 59 --------------AQEVEPDG--GVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEV 102 Query: 130 QYLEFKDKVGEIISGTVK----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+ + G++++G V+ R E G V VDLG +GV+ + E + E G+RV+ Sbjct: 103 HFGEYVGRDGDLVTGVVQAHEARAEKGIVSVDLGKLEGVLPQSEQVPGEQYAHGERVRCV 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + RGPQV LSR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 163 VVHVAKGVRGPQVTLSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTA 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 + ++ GAC+G G RV+AV+ EL EKIDI+ WS D A FV NAL PA +V +D Sbjct: 223 AGVNAKGACIGPMGQRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLA 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + Sbjct: 283 SRTARVTVPDFQLSLAIGREGQNARLAARLTGWRIDIRSDAEPARPAGNAEADH 336 >gi|111225121|ref|YP_715915.1| transcription elongation protein nusA [Frankia alni ACN14a] gi|111152653|emb|CAJ64394.1| Transcription elongation protein nusA [Frankia alni ACN14a] Length = 365 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 141/343 (41%), Positives = 198/343 (57%), Gaps = 28/343 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + EK I D ++ M ++ A G+ D RV I+ TG++S+ Sbjct: 6 AALRGIEREKDIAFDTLVQAMETALLTAYHHTAGSAPDARVVIDRTTGEVSVL------- 58 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 AR+ P G P DFGR+A +AKQVI+Q++REA+++ Sbjct: 59 -------------AREPGPD---GTSREYDDTPADFGRIATMTAKQVIMQRLREAQQEVT 102 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E L GDR+K Y+ Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERLEHGDRIKCYV 162 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R GP V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K+AV S + Sbjct: 163 VHVARGPHGPTVTLSRTHPELVKGLFRLEVPEVADGTVELAAIAREAGHRSKIAVRSKVA 222 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 ++P GAC+G GSRV+AV+ EL EKIDIV WS D ATFV +AL PA V +V + D Sbjct: 223 GVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGSALSPARVARVEVTDLAS 282 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ ED Sbjct: 283 RSARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDAEDR 325 >gi|160902006|ref|YP_001567587.1| transcription elongation factor NusA [Petrotoga mobilis SJ95] gi|160359650|gb|ABX31264.1| NusA antitermination factor [Petrotoga mobilis SJ95] Length = 341 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 212/339 (62%), Gaps = 2/339 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L LL+ DA+ +K I RD ++ ++A SI+ A + YG ++ +EI+ +++++L Sbjct: 2 NLNLLEALDALERDKGISRDSLVDIIAKSIKSAYKKNYGA-KNVEIEIDKNLTKLNVYQL 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVRE 124 +VVE VEN +ISL+ A+ +P I+IG +V + DF RVA Q+AKQVI+Q ++E Sbjct: 61 WKVVETVENPKEEISLEEAKKINPKIEIGEMVRKKINLKKDFRRVAAQTAKQVILQNLKE 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+ + ++ I + + +V + + +G + + ETI E + G+ VK Sbjct: 121 LEKKNLFDKYVALKNRISTAEIIKVSDEYIDIRIGKLETKLPMKETIPGETFKSGELVKV 180 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 YI +++ +GP++++SRT P+ + +L VPEI GI+++ + R+PG R K+AV SS Sbjct: 181 YIKNIQNTSKGPKIMVSRTVPELITELLSSIVPEIEEGIIKIVKIVREPGIRTKVAVVSS 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +DPVGAC+G +GSR+ ++ EL++EK+DI+ +S D F+ +AL PA V ++L+ED Sbjct: 241 MPGVDPVGACIGEKGSRISELLKELKNEKVDIIEYSEDPKIFIKHALAPAEVKNIILNED 300 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V VP+ QLSLA+G+ GQ RLA+++TGW IDI + Sbjct: 301 EKTAFVYVPENQLSLAVGKGGQTARLAAKITGWKIDIHS 339 >gi|171778095|ref|ZP_02919352.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283077|gb|EDT48501.1| hypothetical protein STRINF_00187 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 397 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 128/349 (36%), Positives = 205/349 (58%), Gaps = 15/349 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDI 355 >gi|116627258|ref|YP_819877.1| transcription elongation factor NusA [Streptococcus thermophilus LMD-9] gi|116100535|gb|ABJ65681.1| Transcription elongation factor [Streptococcus thermophilus LMD-9] gi|312277742|gb|ADQ62399.1| Putative transcription factor [Streptococcus thermophilus ND03] Length = 391 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 213/387 (55%), Gaps = 15/387 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + EV Sbjct: 1 MLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R+ Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y E+K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 121 ITYNEYKQHEGEIMQGTVERFDQRFIYVNLGTLEAQLSRQDQIPGESFKSHDVIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ VV+ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAPA 300 Query: 295 IVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEAE 360 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEG 380 ++ I + + E Sbjct: 361 KAEAEVDEVVEEIVAEATPVDVTTEEA 387 >gi|239617901|ref|YP_002941223.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239506732|gb|ACR80219.1| NusA antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 129/325 (39%), Positives = 200/325 (61%), Gaps = 1/325 (0%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K+I +D V+S++ ++Q A R +GT +++ V I+ TGDI+++ L+VV+EVEN +I Sbjct: 16 KNIKKDEVISILEKALQSAYRKNFGTENEVEVRIDRLTGDIAIYEKLKVVDEVENPYREI 75 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 +L A+ D +I G V L F R+A Q+A+QV+IQK+RE E++ + + G Sbjct: 76 TLSEAKKIDSDAEIDGYVYRKLNIKKFKRIAAQTARQVLIQKIREMEKENLFQTYSALKG 135 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL 199 + + + RV + +G + + E I E LR G +K ++ DV R +GP++L Sbjct: 136 SVTTAEILRVTENWADIRIGKLESRLPTREMIPGERLRAGSFIKVFVVDVVRTTKGPKIL 195 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRG 259 ++R +F+V+L ++VPEI +G V VKAV+R+ G R K+AV S++ +DP+GAC+G G Sbjct: 196 VTRKGTEFVVELLKLQVPEIESGDVVVKAVAREEGIRTKVAVASTNPKVDPIGACIGEGG 255 Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLS 318 R+ V+ E+R EK+DI+ WS D A FV NA+ PA +V + V V QLS Sbjct: 256 VRIAEVLREIRPEKVDILKWSDDPAEFVGNAIAPATAVEVKIVSSANREAVVYVSPTQLS 315 Query: 319 LAIGRRGQNVRLASQLTGWTIDIIT 343 LAIG+ GQN RLA++LTGW +DI Sbjct: 316 LAIGKGGQNARLAAKLTGWKVDIKP 340 >gi|227544951|ref|ZP_03975000.1| transcription termination factor NusA [Lactobacillus reuteri CF48-3A] gi|300910018|ref|ZP_07127478.1| transcription termination factor NusA [Lactobacillus reuteri SD2112] gi|227185062|gb|EEI65133.1| transcription termination factor NusA [Lactobacillus reuteri CF48-3A] gi|300892666|gb|EFK86026.1| transcription termination factor NusA [Lactobacillus reuteri SD2112] Length = 395 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 27/390 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ VE N TG+I ++ + Sbjct: 7 NTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYG-DKNVEVEFNSLTGNIKVYAV 65 Query: 66 LEVVEEVE----NYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + ++ E + +SL AR DIG + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDDEEAVEADSNEFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+ Sbjct: 126 QRLREEERKIIYDKYKTYENEIITGEVSREDKRFTYVDLGDGVEGAMGFRDKMPNEHYHV 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++RGPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + + A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKEPAKFIANALNPAEVLD 305 Query: 299 VVLDED-------------------VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V+ +E+ V+VP QLSLAIG+RGQN RLA++LT + I Sbjct: 306 VIFNEEKAASETEDSEGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKI 365 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVD 369 DI +E E + N Q+ N + Sbjct: 366 DIKSESEMAENDQESEEVADSEENVDNNEE 395 >gi|332523131|ref|ZP_08399383.1| transcription termination factor NusA [Streptococcus porcinus str. Jelinkova 176] gi|332314395|gb|EGJ27380.1| transcription termination factor NusA [Streptococcus porcinus str. Jelinkova 176] Length = 384 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 215/374 (57%), Gaps = 15/374 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 4 EMLEAFRILEEEKHINKDDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EITYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDEIDSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDALET 363 Query: 353 KDFNERTQFFMQAI 366 + + T ++ + Sbjct: 364 EQEHVNTSEEVEQV 377 >gi|189485237|ref|YP_001956178.1| transcription antitermination factor NusA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287196|dbj|BAG13717.1| transcription antitermination factor NusA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 418 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 237/390 (60%), Gaps = 1/390 (0%) Query: 31 MADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPS 90 + +++ A + G ++ ++NPE G+++ + VV++V N +I ++ A+ D S Sbjct: 29 IENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKVVVKDVVNPLLEICVQDAKKFDQS 88 Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 ++IG V PL DF R+A Q+AKQVI+QK+RE+ERD + E K+K+G+I +G + R+ Sbjct: 89 VEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESERDSLFDEMKEKIGQIANGAIYRIT 148 Query: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 N+IVDLG ++ ++ E + +E G +K+ I V + +G V+LSRT + + + Sbjct: 149 NRNLIVDLGKTEAILPSSEQVFKEKFSVGQYIKAVIIKVEKSVKGSGVVLSRTSIELVKR 208 Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270 LF +EVPEIY IV++ V R+PG R K+ V S + +DPVGACVG++G+RV+ ++ ELR Sbjct: 209 LFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNPKVDPVGACVGVKGARVKPIIDELR 268 Query: 271 DEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVR 329 E+ID+V +S D A ++ +A+ PA + V + E+ + EV+V + L LAIG+ G NVR Sbjct: 269 GERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEEKKAEVLVTDDMLFLAIGKNGHNVR 328 Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389 LA++LTGW ID+ +E + + ++ + F + E I +LV G DVE+L+ Sbjct: 329 LAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKLEGFSERIIKMLVKAGITDVEKLSL 388 Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEG 419 + + ++ G +TA +I A+ + Sbjct: 389 LTTEYLITLPGIGHKTAEKIIEVAKNSIRK 418 >gi|225849798|ref|YP_002730032.1| transcription termination factor NusA [Persephonella marina EX-H1] gi|225646384|gb|ACO04570.1| transcription termination factor NusA [Persephonella marina EX-H1] Length = 374 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 221/368 (60%), Gaps = 19/368 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L + +AVA EK++ +++ + D I A + YG +++V + E ++ + V Sbjct: 5 LKNVIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLLKKRV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEN ISL+ A+ DP ++G V PL + GR+A+ +AK+VI KV E++ Sbjct: 65 TPFVENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVARVEKN 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EFK+ G+I++GTV+R E G++IVDLG + V+ +E I +E R GDR+++ I Sbjct: 125 ILFKEFKELEGKIVTGTVRRFEDGDIIVDLGRIEAVLPEEEQIKKEKYRVGDRIRALILK 184 Query: 189 VRREQRGP-------------------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 V ++ P V+LSRTHP F+ KL +EVPEI G +++KA+ Sbjct: 185 VIKDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEIEIKAI 244 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL EKID++ W PD A F++ Sbjct: 245 AREPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPAQFILR 304 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 AL P+ K L ED RIEV VPK +LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 305 ALSPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSEEDFER 364 Query: 350 NRQKDFNE 357 +Q Sbjct: 365 IQQLPRKT 372 >gi|116511573|ref|YP_808789.1| transcription elongation factor NusA [Lactococcus lactis subsp. cremoris SK11] gi|116107227|gb|ABJ72367.1| Transcription elongation factor [Lactococcus lactis subsp. cremoris SK11] Length = 382 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 133/346 (38%), Positives = 214/346 (61%), Gaps = 1/346 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ + + +I A + YG +++V + + G+ +++ E Sbjct: 4 EMLNAFAMLEEQKGIKSEIAIEAIEQAITAAYKRQYGQAQNVKVIFDEKKGNFNVYSTRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISL+ A + +P +IG + P DF R A +AKQVI+QK+RE ER Sbjct: 64 VVDEVFDSRLEISLEDAHELNPHYEIGDKIMFEEKPKDFARTAAGAAKQVIMQKMREEER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ EII GTV++V+ V V+LG D ++ + + I +EN DRVK Y+ Sbjct: 124 TIIYNEYSRYKDEIIQGTVEKVDARAVYVNLGRVDALLTKKDQIPQENFHVDDRVKVYVT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV +G +V +SRT P + ++F E+PE+++G V++K+++RD G RAK+ V S D + Sbjct: 184 DVVLTPKGTRVFISRTVPDMLKRMFEKEIPEVFDGTVEIKSIARDAGDRAKVIVQSHDEN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +D +G VG +GSR+Q ++ EL EK+DI+ WS D AT V NAL+PA + +V++ D G Sbjct: 244 VDAIGTMVGAKGSRIQGIIRELAGEKMDIIEWSEDKATLVANALKPARIEQVLITAD-GS 302 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +V ++QLSLAIG+RGQNVRLA+ +T IDI +E +++ + Sbjct: 303 SLAVVARDQLSLAIGKRGQNVRLAAHVTNSKIDIKAADEFNMDDYE 348 >gi|302528542|ref|ZP_07280884.1| transcription termination factor NusA [Streptomyces sp. AA4] gi|302437437|gb|EFL09253.1| transcription termination factor NusA [Streptomyces sp. AA4] Length = 350 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 206/370 (55%), Gaps = 27/370 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I D V+ + ++ A + G R++I+ +TG + + Sbjct: 3 IAALRAIERDKDIPFDTVIEAIETALLTAYKHTEGHQPHARIDIDRKTGLVRVL------ 56 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 57 --------------AHTLTSEGEVDEEWDD--TPEGFGRIAATTARQVILQRLRDAEHEK 100 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 Y EF K GEI++G V+R N V++ +G+++GV+ + E ++ E+ G R+K++ Sbjct: 101 TYGEFSAKEGEIVAGVVQRDARANARGMVVIQVGDTEGVLPQAEQVAGESYEHGTRIKAF 160 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 ++ V R RGPQ++LSR+HP + KLF +EVPEI +G V++ AV+R+PG R+K+AV S+ Sbjct: 161 VFGVSRSNRGPQIMLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRSKIAVRSTI 220 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ WS D A FV NAL PA V V +DE Sbjct: 221 PGVNAKGACIGPMGARVRNVMSELAGEKIDIIDWSDDPAKFVGNALSPAKVVSVRVVDER 280 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + E+ Sbjct: 281 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPAEPAGPGEGEQDHAGQA 340 Query: 365 AINVDEIIAH 374 A Sbjct: 341 RPAAATGSAD 350 >gi|329117087|ref|ZP_08245804.1| transcription termination factor NusA [Streptococcus parauberis NCFD 2020] gi|326907492|gb|EGE54406.1| transcription termination factor NusA [Streptococcus parauberis NCFD 2020] Length = 395 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 131/381 (34%), Positives = 214/381 (56%), Gaps = 15/381 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++ ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 15 EMLEAFRILEEEKHINKSDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFTVRE 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +I LK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 75 VVEEVFDSRLEIGLKDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 135 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 194 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 195 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 254 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 255 VDAIGTIVGRGGSNIKKVISKFHPKRFDQKAGAEIPVEENIDVIQWVDDPAEFIYNAIAP 314 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 315 AEVDMVLFDEADSKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYERMEA 374 Query: 353 KDFNERTQFFMQAINVDEIIA 373 + N+ T+ + I Sbjct: 375 EQENQSTELVEETIAPTNEEE 395 >gi|269303191|gb|ACZ33291.1| transcription termination factor NusA [Chlamydophila pneumoniae LPCoLN] Length = 434 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 144/430 (33%), Positives = 233/430 (54%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F Sbjct: 2 NKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V EI+SG VKR + N+I+DLG + ++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNEILSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV S Sbjct: 182 LLYEVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL SQ+ + +++ E + + + +F Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + +++ L G+ + + +++AS+ G E A +I + +Y Sbjct: 362 PHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 E + Sbjct: 422 GESKVDEKPE 431 >gi|24378911|ref|NP_720866.1| transcription elongation factor NusA [Streptococcus mutans UA159] gi|290581068|ref|YP_003485460.1| putative transcription factor [Streptococcus mutans NN2025] gi|24376794|gb|AAN58172.1|AE014888_10 putative transcription factor NusA [Streptococcus mutans UA159] gi|254997967|dbj|BAH88568.1| putative transcription factor [Streptococcus mutans NN2025] Length = 397 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 213/388 (54%), Gaps = 15/388 (3%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 E+L+ + EK I++D ++ + +S++ A + YG +E + ++GD +F + Sbjct: 3 QEMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQAESAEIEFDEKSGDFKVFTVR 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 EVVEEV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R Sbjct: 63 EVVEEVFDSRLEISLKDALAISTAYELGDKIRFEESPKEFGRVAAQSAKQTIMEKMRRQM 122 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ + E+K+ EI++GTV+R + + V+LG + + R + + E DR++ Y+ Sbjct: 123 REVTFNEYKEHEREIMTGTVERFDNRFIYVNLGTIEAQLSRQDQVPGETFASHDRIEVYV 182 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +V+R+ G R K+AV S + Sbjct: 183 YKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVAREAGDRTKVAVRSHNP 242 Query: 247 SIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALR 292 ++D +G VG +G+ ++ V ++ E +D++ W D A F+ NA+ Sbjct: 243 NVDAIGTIVGRKGANIKKVTSKFHPKRFDQKTGLWVPMEENVDVIEWVDDPAEFIYNAVA 302 Query: 293 PAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 PA V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 303 PAEVDQVLFDEEDDKHATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEME 362 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAE 379 + + L E Sbjct: 363 AEWAAQDETQEATYEEAPAEEVSELSQE 390 >gi|257463891|ref|ZP_05628277.1| transcription elongation factor NusA [Fusobacterium sp. D12] gi|317061420|ref|ZP_07925905.1| transcription elongation factor NusA [Fusobacterium sp. D12] gi|313687096|gb|EFS23931.1| transcription elongation factor NusA [Fusobacterium sp. D12] Length = 353 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 131/344 (38%), Positives = 210/344 (61%), Gaps = 3/344 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ + + EK I ++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDAKAFLEALNELEKEKGIAKESLLQAVEQALLTAYKKNYGDEENVEVIIDRENGDV 60 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + VVEE + + +ISL+ AR +G + + F R A+Q+ KQ+I Sbjct: 61 KVYEVKTVVEEEDLYDAALEISLEEARKISRKAKLGEEIRIEVDCESFRRNAIQNGKQII 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCISDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGVIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S ++ID VGAC+G + SR++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELANIDIVGACIGQKRSRIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344 >gi|313889714|ref|ZP_07823357.1| transcription termination factor NusA [Streptococcus pseudoporcinus SPIN 20026] gi|313122011|gb|EFR45107.1| transcription termination factor NusA [Streptococcus pseudoporcinus SPIN 20026] Length = 384 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 212/373 (56%), Gaps = 15/373 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTYNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGIEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D+ D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 304 AEVDMVLFDDTDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYEALEA 363 Query: 353 KDFNERTQFFMQA 365 + T + Sbjct: 364 EQEEVNTSEEVDQ 376 >gi|110803140|ref|YP_698976.1| transcription elongation factor NusA [Clostridium perfringens SM101] gi|110683641|gb|ABG87011.1| N utilization substance protein A [Clostridium perfringens SM101] Length = 366 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 4/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVVSVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349 >gi|227431859|ref|ZP_03913883.1| transcription termination factor NusA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352401|gb|EEJ42603.1| transcription termination factor NusA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 365 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 140/345 (40%), Positives = 215/345 (62%), Gaps = 4/345 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++ Sbjct: 4 ELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQVKH 63 Query: 68 VVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R Y +F D EII+G V R + + V+L GN + V+ + + E GDR+K Sbjct: 124 GRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPSDQMPNERYHMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 244 DTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPA 303 Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAA 348 >gi|116618453|ref|YP_818824.1| transcription elongation factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097300|gb|ABJ62451.1| Transcription elongation factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 365 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 140/345 (40%), Positives = 216/345 (62%), Gaps = 4/345 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ +A+ E+ IDR VV+ + D+++ A + Y T ++ + + G+IS+ ++ Sbjct: 4 ELVEALNALESERGIDRLVVVEALEDALKAAYKKQYNTADNVEATFDDKKGNISIKQVKH 63 Query: 68 VVEEVENYTCQI--SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV + + +I SL A + + + G + + P DFGR+A Q+AKQVI+QK+REA Sbjct: 64 VVLDDDLEDEEIEISLSDALAINRAYEAGDEIRFDVTPKDFGRMAAQAAKQVIVQKMREA 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKS 184 R Y +F D EII+G V R + + V+L GN + V+ ++ + E GDR+K Sbjct: 124 GRQAIYNKFSDYEDEIITGEVDRQDARFLYVNLPGNQEAVMAPNDQMPNERYHMGDRIKV 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V +GPQV +SRT + +LF EVPE+Y+G V++ +++R+ G R+K+AV++ Sbjct: 184 LVNKVENNAKGPQVFVSRTAADLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYTH 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D+ +DPVGA VG RG+RVQ+VV EL E +DIV W D A ++ NAL P+ VT V+ D Sbjct: 244 DTDLDPVGAMVGQRGARVQSVVNELAGENMDIVEWVEDEAQYIANALNPSEVTDVIFDPA 303 Query: 305 V-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + Sbjct: 304 NDRAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAA 348 >gi|331698436|ref|YP_004334675.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326953125|gb|AEA26822.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 348 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 132/347 (38%), Positives = 197/347 (56%), Gaps = 29/347 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I D+VL + ++ A + G R++I+ +TG + + Sbjct: 5 IAALRAIERDKDIPFDMVLEAIETALLTAYKHTDGHEPHARIDIDRKTGLVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ + D P FGRVA +A+QVI+Q++R+AE +R Sbjct: 59 --------------AQELGDDGQVAREWDD--TPEGFGRVAATTARQVIVQRLRDAEHER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN--SDGVIRRDETISRENLRPGDRVK 183 + EF K GEII+G V+ N V+V L ++GV+ + E + E + GDR++ Sbjct: 103 TFGEFSAKEGEIITGEVQADSRANARGVVVVSLSGSQAEGVLPQTEQVPGERYQHGDRLR 162 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ V R RG Q+ LSRTHP + KLF +EVPE+ +G V++ AV+R+ G R K+AV S Sbjct: 163 CYVLGVSRGPRGTQITLSRTHPNLVRKLFALEVPELVDGSVEIVAVAREAGHRTKIAVRS 222 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302 + ++P GAC+G G+RV+ V++EL EKIDI+ WS D ATFV NAL P+ V V +D Sbjct: 223 TVPGVNPKGACIGPMGARVRGVMSELAGEKIDIIDWSDDPATFVGNALSPSKVVSVTVID 282 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 AKTRTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDSDPRN 329 >gi|291296311|ref|YP_003507709.1| NusA antitermination factor [Meiothermus ruber DSM 1279] gi|290471270|gb|ADD28689.1| NusA antitermination factor [Meiothermus ruber DSM 1279] Length = 392 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 143/378 (37%), Positives = 228/378 (60%), Gaps = 14/378 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTMSDIRVEINP 55 + + VA+E+ + + ++S ++++ A G I V ++P Sbjct: 2 NKDFVDALSQVAHERGVTAEELISNFEEALRLAYLRQKGFRPKDVEEEGKGPIIEVHLDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 + G + + + VVEEV++ +I L+ A+ DP +++G + P+ P +F R+AVQ AK Sbjct: 62 QEGHLEVLEIRRVVEEVKDPDKEIDLETAKKYDPEVEVGEEMEFPVDPEEFSRIAVQIAK 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 QV+ Q+++EAER R + E+KDK GE+++G+V RV+ GNV V+LG + ++ + E I E Sbjct: 122 QVLTQRLKEAERTRVHNEYKDKEGEVVTGSVARVDNRGNVYVELGRGEALMPQKEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K Y+ V+R +GP +++SR H + + L EVPEI GIV+VKAV+R+PG Sbjct: 182 RYHPGQRIKVYLKQVQRSSKGPSLVVSRAHEELLRYLLRQEVPEIAEGIVEVKAVAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV S + ++DP+GAC+G +G R+QAV EL E+IDI+ WSP+ F+ NAL PA Sbjct: 242 SRSKVAVVSHNPNVDPIGACIGHKGQRIQAVSAELGRERIDIIQWSPNPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V ++ ++ R V+V K+Q SLAIG+ GQNVRLAS+LTG+ I+ EE + Sbjct: 302 TVGEITIENSENGQNRASVVVAKDQHSLAIGKAGQNVRLASKLTGYEINFEEAEEITDLD 361 Query: 352 QKDFNERTQFFMQAINVD 369 + ++ D Sbjct: 362 AAILKAAERDESSRVSSD 379 >gi|289643647|ref|ZP_06475760.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata] gi|289506538|gb|EFD27524.1| NusA antitermination factor [Frankia symbiont of Datisca glomerata] Length = 362 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 28/345 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + EK I D ++ + ++ A R G +D RV I+ +G ++++ Sbjct: 6 AALRGIEREKDIAFDTLVEAIETALLTAYRHTDGAAADARVVIDRTSGHVAVYAR----- 60 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 + SL G P DFGR+A +AKQVI+Q++REA+++ Sbjct: 61 -------ETSLD-----------GMTREWEDTPADFGRIATMTAKQVIMQRLREAQQEIT 102 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 Y ++ D+ E++SG V+ E V+VDLG +GV+ E + E GDR+K Y+ Sbjct: 103 YGQYADREHEVVSGVVQHHEQRAGSKVVLVDLGTIEGVLPPAEQVPGERFEHGDRIKCYV 162 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R GP V LSRTHP+ + LF MEVPE+ +G V++ A++R+ G R+K+AV S+ + Sbjct: 163 VSVTRGVHGPTVTLSRTHPELVKGLFRMEVPEVADGTVEIAAIAREAGHRSKIAVRSTVA 222 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 ++P GAC+G G+RV+AV+ EL EKIDIV WS D A FV NAL PA V +V + D V Sbjct: 223 GVNPKGACIGPMGARVRAVMAELHGEKIDIVDWSADPAAFVGNALSPARVARVEVADPAV 282 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ E + + Sbjct: 283 RAARVVVPDYQLSLAIGREGQNARLAARLTGWRIDIHSDTEGAGD 327 >gi|291541940|emb|CBL15050.1| transcription termination factor NusA [Ruminococcus bromii L2-63] Length = 386 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 220/373 (58%), Gaps = 5/373 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +L + EK I D +L + +I A ++ YG ++ +++PE + Sbjct: 3 NKDLFEALRTFEKEKGIPMDYMLQNIEKAISVACKNYYGGNENVVFKVDPEKNSFDAKLV 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSID--IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VV+EV + +++++ A+ + +G + P+ P G +V SA+ VI Q +R Sbjct: 63 KTVVDEVFDPNFEVTVEEAQQINKRKKFIVGDEIEVPIDPKHLGWTSVSSARNVIRQGIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI--VDLGNSDGVIRRDETISRENLRPGDR 181 + E+ + +EF+ K+GEI++ TV+R++ + + + +G S+ + + E + ++L+ GD Sbjct: 123 QGEKGQTLIEFQSKLGEIVTATVERIDPKSGVATIKIGKSEATLPKSEQLGHDDLKEGDH 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K YI DV+ +RGP ++SRTHP + +LF EVPEIY+G+V++K++SR+ GSR K+AV Sbjct: 183 IKVYIADVKDNERGPHAIISRTHPGLVKRLFEQEVPEIYDGVVEIKSISREAGSRTKMAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +SS+ +D +G+C+G +G+RV +V EL EKIDIV++S D ++ AL PA V KV + Sbjct: 243 YSSNPDVDAIGSCIGNKGARVNKIVEELGGEKIDIVLYSDDPEKYISAALSPASVCKVEI 302 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 DE+ VP QLSLAIG +GQN RLA++LTGW IDI E + D + + Sbjct: 303 TDEETKSCRATVPDGQLSLAIGNKGQNARLAARLTGWRIDIRPESGFYGEDEDDEPKTEE 362 Query: 361 FFMQAINVDEIIA 373 +++DE Sbjct: 363 KSEDVLDLDESTE 375 >gi|213418035|ref|ZP_03351112.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 319 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 131/336 (38%), Positives = 204/336 (60%), Gaps = 18/336 (5%) Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPGSRAK+ Sbjct: 1 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 60 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V + Sbjct: 61 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 120 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + Sbjct: 121 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAI 180 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L Sbjct: 181 EIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALAT 240 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG 479 + + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 241 LAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE----- 295 Query: 480 NIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 296 ------------GLTDEKAGELIMAAR-NICWFGDE 318 >gi|296122805|ref|YP_003630583.1| transcription termination factor NusA [Planctomyces limnophilus DSM 3776] gi|296015145|gb|ADG68384.1| transcription termination factor NusA [Planctomyces limnophilus DSM 3776] Length = 442 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 148/431 (34%), Positives = 244/431 (56%), Gaps = 32/431 (7%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N E+L+I D++ +KSID+++V + +I AAR +G I V I+ +G + Sbjct: 1 MNGNEVLRIVDSIHRDKSIDKEIVFEGVEQAILSAARKHFGEEEVIEVHIDRTSGQPMVK 60 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 R+ D ++G ++ GR++ Q+AKQV+IQK+R Sbjct: 61 ------------------TNGREIDRD-ELGDIL---------GRISAQTAKQVMIQKIR 92 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD + E+ G+I+SGTV R E + V++G ++ ++ R E I E+ RP +R++ Sbjct: 93 EAERDTLFDEYAQLRGQIVSGTVTRNEGSAITVNIGKAEAILPRSEMIPGESHRPNERIR 152 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + +V++ +V+LSR HP F+ +L +E+PE+ I+++++++R+ G R K+AV Sbjct: 153 AVVLEVKKMGPRVRVVLSRAHPDFVRRLLELEIPEVNERIIEIRSLAREAGYRTKVAVSC 212 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 +DS+IDPVGACVG+RG+R++ V EL E+I++V W+ V NA++P+ V V+L Sbjct: 213 ADSNIDPVGACVGVRGARIRNVGEELGGERIEVVRWNDSLQVLVPNAMQPSEVEDVILCP 272 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR+ V+V +QLSLAIG+RGQNVRLAS+L GW ID++T EE + +Q Sbjct: 273 MLGRVLVLVRDDQLSLAIGKRGQNVRLASKLVGWDIDVMTREELDQQLDQAVVAYSQIP- 331 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 V E +A LV++GF E+L+ ++ E+ + +E A I A E I+ Sbjct: 332 ---GVSEELAEGLVSQGFLSFEDLSVIEPDELMEMGSLTQEQADVIVEYAERESERIEKE 388 Query: 424 LQKKIRELGVS 434 + Sbjct: 389 QDLRRATEKAE 399 >gi|319947585|ref|ZP_08021815.1| transcription elongation factor NusA [Streptococcus australis ATCC 700641] gi|319746273|gb|EFV98536.1| transcription elongation factor NusA [Streptococcus australis ATCC 700641] Length = 381 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 131/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLDAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQAESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDEEDSKHALVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEEMEA 363 Query: 353 KDFNERTQFFMQAINVDE 370 + +VDE Sbjct: 364 SQEPAFEEVESDLNSVDE 381 >gi|168214478|ref|ZP_02640103.1| N utilization substance protein A [Clostridium perfringens CPE str. F4969] gi|170714047|gb|EDT26229.1| N utilization substance protein A [Clostridium perfringens CPE str. F4969] Length = 366 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 4/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSSTPSEYIENALSPAKVISVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349 >gi|320547937|ref|ZP_08042220.1| transcription termination factor NusA [Streptococcus equinus ATCC 9812] gi|320447477|gb|EFW88237.1| transcription termination factor NusA [Streptococcus equinus ATCC 9812] Length = 389 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 209/365 (57%), Gaps = 15/365 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I++D ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKDDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETWKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPVEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 366 Query: 353 KDFNE 357 + + Sbjct: 367 ERAEQ 371 >gi|262066535|ref|ZP_06026147.1| transcription termination factor NusA [Fusobacterium periodonticum ATCC 33693] gi|291379769|gb|EFE87287.1| transcription termination factor NusA [Fusobacterium periodonticum ATCC 33693] Length = 353 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 127/354 (35%), Positives = 219/354 (61%), Gaps = 4/354 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + VV+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y +FK++ +I++G ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIYEKFKERENDIVTGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ Sbjct: 241 KVAVYSQVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ + Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEEDDE 353 >gi|306820436|ref|ZP_07454072.1| transcription termination factor NusA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551511|gb|EFM39466.1| transcription termination factor NusA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 359 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 134/354 (37%), Positives = 220/354 (62%), Gaps = 12/354 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E ++ D + +K I ++++L + +I A + YG+ +++ V I+ + GDI + Sbjct: 2 NTEFIRALDQLEKQKGIKKEILLDAINQAILNAYKKNYGSNAEVEVSIDTKKGDIKIINP 61 Query: 66 LEVVEE--VENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + +V++ V+ +++++ A + G +V + + P DFGR+A Q+A+Q+++QK+ Sbjct: 62 ITIVDDDKVDILDNEMTVEYANQFFGKQYKEGDIVREEVTPKDFGRIATQAARQIVVQKI 121 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---------NSDGVIRRDETISR 173 +EAE+D QY EFK K EII+G V R+ V D+ N++GV+ E +S Sbjct: 122 KEAEKDIQYTEFKKKETEIITGMVSRISKSTVYADISILGENDIMINAEGVLPNGEQMSG 181 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 +N G +K YI +V+R Q++LSR+HP + +LF MEVPEI++G V++ ++SR+ Sbjct: 182 DNYELGQNMKFYILEVKRTNNKTQIVLSRSHPGLVKRLFEMEVPEIFDGTVEIISISREA 241 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 GSR K+AV ++ +DP+GACVG RG RV+ + E+ EKIDI+ ++ D A ++ +L P Sbjct: 242 GSRTKMAVKTNMQDVDPIGACVGTRGQRVKNITDEINGEKIDIIEYNDDLAEYITASLSP 301 Query: 294 AIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 A V V +DE+ +VIVP ++LSLAIG+ GQN RLA++LT W IDI E E Sbjct: 302 AKVVSVEIDEEEKIAKVIVPDDKLSLAIGKEGQNARLAAKLTNWKIDIKCESEM 355 >gi|18310671|ref|NP_562605.1| transcription elongation factor NusA [Clostridium perfringens str. 13] gi|110800366|ref|YP_696376.1| transcription elongation factor NusA [Clostridium perfringens ATCC 13124] gi|168211423|ref|ZP_02637048.1| N utilization substance protein A [Clostridium perfringens B str. ATCC 3626] gi|168216976|ref|ZP_02642601.1| N utilization substance protein A [Clostridium perfringens NCTC 8239] gi|169342667|ref|ZP_02863708.1| N utilization substance protein A [Clostridium perfringens C str. JGS1495] gi|18145352|dbj|BAB81395.1| probable transcriptional terminator [Clostridium perfringens str. 13] gi|110675013|gb|ABG84000.1| N utilization substance protein A [Clostridium perfringens ATCC 13124] gi|169299173|gb|EDS81243.1| N utilization substance protein A [Clostridium perfringens C str. JGS1495] gi|170710583|gb|EDT22765.1| N utilization substance protein A [Clostridium perfringens B str. ATCC 3626] gi|182380937|gb|EDT78416.1| N utilization substance protein A [Clostridium perfringens NCTC 8239] Length = 366 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 222/348 (63%), Gaps = 4/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ GTV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPGTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349 >gi|317133695|ref|YP_004093009.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315471674|gb|ADU28278.1| NusA antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 370 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 138/367 (37%), Positives = 207/367 (56%), Gaps = 2/367 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E +A+ EK I + +A++I A + Y T + VE++P+ + Sbjct: 2 NAEFFDALEALEKEKGIPEGHLAEKIANAITIAVKHNYKTGDNTIVELDPQKRIFRVALR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V E VEN +I L A+ DP + IG V L FGR+A Q+AK VI Q +RE Sbjct: 62 KTVSETVENPQMEIYLDEAKAIDPRVTIGDTVDIELDTRKFGRIAAQTAKHVIRQGIREV 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ER+ E + E+++ + R++ G+ +D+G ++ V+ +E I E LR G VK Sbjct: 122 EREIIKDESMSRQHEMVTAGISRIDSVTGSAYLDIGRAEAVMPANEQIPGEQLREGQMVK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ +V+ ++G + L+SRTHP + +LF +EVPEIY+G V++ ++R+PGSR K+AV S Sbjct: 182 VYVVEVKNGEKGVRTLVSRTHPGMIRRLFELEVPEIYDGTVEIMGIAREPGSRTKVAVAS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +D +G+C+G +G RV +V EL EKID++ ++ D ++ AL PA V +V DE Sbjct: 242 KNEDVDAIGSCIGPKGGRVGNIVEELHGEKIDLIPYAQDIGQYIAAALAPAAVVEVTTDE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 R VIVP +QLSLAIG RGQNVRLA++LTGW IDI E + Q F Sbjct: 302 KERRARVIVPDDQLSLAIGNRGQNVRLAAKLTGWRIDIRPESGADEDPQPRQTNMAAAFE 361 Query: 364 QAINVDE 370 A + Sbjct: 362 AAETEPD 368 >gi|212696551|ref|ZP_03304679.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM 7454] gi|212676487|gb|EEB36094.1| hypothetical protein ANHYDRO_01089 [Anaerococcus hydrogenalis DSM 7454] Length = 410 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 144/410 (35%), Positives = 243/410 (59%), Gaps = 1/410 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + + + K++D+ ++L + ++ K+ + Y ++ V I+ ETG+I ++ L Sbjct: 2 NKEFIIALEELEKSKNVDKKIILEALEKALVKSYQKNYENNENVDVNIDDETGEIEVYSL 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV + +IS AR+ D +D+G + + P +FGRVA Q+A+ +++QK+R+A Sbjct: 62 KNVVDEVNDPIAEISKTKAREIDSKLDLGDICRVKIAPKNFGRVAAQTARNIVLQKIRDA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y E+ D+ EII+G V+R + NV ++L +G+I E + E R+K Sbjct: 122 QRDSVYSEYLDRANEIITGVVQREDKYNVYINLDKIEGIIPLKEQVENEKYIANQRIKVL 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV+ + PQ++LSR +V+LF +EVPEI NGI+++ + R+ GSR K+AVFS+D Sbjct: 182 IKDVKNTTKEPQIILSRKDKDLVVRLFELEVPEITNGIIEIYGIDREAGSRTKIAVFSND 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 ID +GAC+G +GSRV ++V EL+ EKIDI+ + D TF+ N+L PA + +V +++ Sbjct: 242 PEIDSIGACIGFKGSRVNSIVEELQGEKIDIINYDKDIKTFIKNSLSPAEINEVYINDMK 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+V ++QLSLAIG+ GQN RLA++LTGW IDI ++EE Q++ +E + Sbjct: 302 KQSLVVVREDQLSLAIGKEGQNARLAARLTGWKIDIKSQEEFDKLDQEEIDEILGLNEEE 361 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + E I + VE+ +I ++ ++ E ++ E Sbjct: 362 DEIVENIDGEI-ENSLDQVEDETDFIEDDIENLSEDLDQIIKEDIEKSEE 410 >gi|15618236|ref|NP_224521.1| transcription elongation factor NusA [Chlamydophila pneumoniae CWL029] gi|15835851|ref|NP_300375.1| transcription elongation factor NusA [Chlamydophila pneumoniae J138] gi|16752722|ref|NP_444989.1| transcription elongation factor NusA [Chlamydophila pneumoniae AR39] gi|33241661|ref|NP_876602.1| transcription elongation factor NusA [Chlamydophila pneumoniae TW-183] gi|4376593|gb|AAD18465.1| N Utilization Protein A [Chlamydophila pneumoniae CWL029] gi|7189363|gb|AAF38280.1| N utilization substance protein A [Chlamydophila pneumoniae AR39] gi|8978690|dbj|BAA98526.1| N utilization protein A [Chlamydophila pneumoniae J138] gi|33236170|gb|AAP98259.1| transcription termination-antitermination factor [Chlamydophila pneumoniae TW-183] Length = 434 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 142/430 (33%), Positives = 231/430 (53%), Gaps = 9/430 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 L+ I D + EK I R ++ + +++ AA+ ++I V IN TGDI +F Sbjct: 2 NKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNINSRTGDIEVFCE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 E+VE +N + +I L AR+ DP IG + P +FGR+A +A+Q+I QK+R A Sbjct: 62 KEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSDNFGRIAAHAARQIIGQKLRHA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ERD Y E++ +V E +SG VKR + N+I+DLG + ++ E + GD++ + Sbjct: 122 ERDVIYEEYRHRVNETLSGVVKRFAKGSNLIIDLGKVEAILPTRFYPKTEKHKIGDKIYA 181 Query: 185 YIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ E G +V+LSR+H +F+ +LF EVPE+ G V++ ++R+ G R KLAV S Sbjct: 182 LLYEVQESENGGAEVILSRSHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD DPVGA VGMRGSRV+ ++ EL DEKIDIV +SP S + N L P + K+ + E Sbjct: 242 SDPKTDPVGAFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAILE 301 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 D I ++V + IG+RG N RL S + + +++ E + + + +F Sbjct: 302 DDKVIAIVVNDADYATVIGKRGINARLISHILDYELEVQRMSEYNKLLEIQRLQLAEFDS 361 Query: 364 QAI-------NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + +++ L G+ + + +++AS+ G E A +I + +Y Sbjct: 362 PHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDLASVPGISLELAYKILEQVSKY 421 Query: 417 LEGIDITLQK 426 E + Sbjct: 422 GESKVDEKPE 431 >gi|307718805|ref|YP_003874337.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] gi|306532530|gb|ADN02064.1| hypothetical protein STHERM_c11190 [Spirochaeta thermophila DSM 6192] Length = 488 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 147/439 (33%), Positives = 235/439 (53%), Gaps = 19/439 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + E+ I ++V + D + A + +GT + VE + + +++L+ + Sbjct: 4 DLKEAIQMLVQERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ E+ QI L AR P + G + + P F R AVQ AKQ Q+++E Sbjct: 64 VVADEDFEDEVLQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y EFKDKVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+ Sbjct: 124 QRDTLYSEFKDKVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IY+V + G QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S Sbjct: 184 IYEVNKTPSGLQVILSRTHTEFVRKVLELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRK 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVG++G R+QA+V EL E++D++ + PD F+ N+L PA V +V++ D + Sbjct: 244 EGVDPVGACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-------------- 350 +V QLSLAIG++G NVRLA++L W ID+ T ++ Sbjct: 304 KKHALAVVKDNQLSLAIGKQGLNVRLANRLVDWNIDVKTAKQVEEMGIGKEAMEAVSAVF 363 Query: 351 -RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVE 408 + E + + I +L +G+ ++E+L + I EE Sbjct: 364 SDLDEQVEEITRIEELPGLPPHIVEILSRQGYEEIEDLVFAYQDNGLEHIPELTEEDRQL 423 Query: 409 IQGRAREYLEGIDITLQKK 427 I + +E ++ + Sbjct: 424 IGKILEDAVEIVEEEETAQ 442 >gi|320108355|ref|YP_004183945.1| NusA antitermination factor [Terriglobus saanensis SP1PR4] gi|319926876|gb|ADV83951.1| NusA antitermination factor [Terriglobus saanensis SP1PR4] Length = 562 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 165/417 (39%), Positives = 242/417 (58%), Gaps = 8/417 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L Q + ++ +K ID +V+ + D+I A R Y T ++R E + E+G+I + V Sbjct: 5 LYQAIELMSRDKGIDPQIVVGAVEDAIALATRKFYKTQENMRGEFDKESGEIRAYVYKTV 64 Query: 69 VE---EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE +VE+ Q++L A++ +++G + GR+A Q AKQVI QKVREA Sbjct: 65 VEGAEQVEDAENQLTLDQAKELAGEVEVGAELRFYKDTSPLGRIAAQMAKQVIFQKVREA 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ERD + E+ +VGEI++ TVKRVE +VIVDL ++ + + E E G+R++ Sbjct: 125 ERDTVFNEYNHRVGEILNATVKRVEPMDVIVDLDKAEARMPKREQSRLEQFAVGERIRVA 184 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R +GPQV++SR P + LF EVPEIY+G V ++A++R+ G R K+AV S D Sbjct: 185 LIRVDRAAKGPQVIVSRAAPSLVQNLFQSEVPEIYDGTVMIRAIAREAGERTKIAVVSRD 244 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVGM+G RVQ+++ ELR EKIDI+ +S + TF AL+PA V +V + D Sbjct: 245 KDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEITTFAEKALQPAKVARVSITDLA 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE----EEDSINRQKDFNERTQ 360 +IEVIV QLSLAIG++GQNVRLA++L GW IDI +E +E Sbjct: 305 EKQIEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMSAMQGAPQT 364 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 Q + E + L+A G VE LA + E+ + G E++ +I R Y Sbjct: 365 PIEQVTELGESVLEKLIAAGITTVESLADMTAEELEEVPGIGEKSVEKITVAVRHYF 421 >gi|315185930|gb|EFU19694.1| transcription termination factor NusA [Spirochaeta thermophila DSM 6578] Length = 488 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 147/439 (33%), Positives = 235/439 (53%), Gaps = 19/439 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + E+ I ++V + D + A + +GT + VE + + +++L+ + Sbjct: 4 DLKEAIQMLVQERGIPEELVQKTIEDFLLAAYKKRFGTAENAHVEFSEDGTEVTLYAKKQ 63 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E+ E+ QI L AR P + G + + P F R AVQ AKQ Q+++E Sbjct: 64 VVADEDFEDEVLQIPLSEARKLAPEAEPGDELLMEVDPKSFDRGAVQVAKQRAQQELKEI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 +RD Y EFKDKVGE+I G +R GN+ VDLG +G++ R RE RP DR+K+ Sbjct: 124 QRDTLYSEFKDKVGELIIGYYQRERNGNIYVDLGKIEGILPRKYQSPREVYRPNDRIKAL 183 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 IY+V + G QV+LSRTH +F+ K+ +EVPEIY+ V++ + R+PG R K+AV+S Sbjct: 184 IYEVNKTPSGLQVILSRTHTEFVRKILELEVPEIYDKTVEIFKIVREPGYRTKIAVYSRK 243 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVG++G R+QA+V EL E++D++ + PD F+ N+L PA V +V++ D + Sbjct: 244 EGVDPVGACVGVKGVRIQALVNELEGERVDVIRYDPDPVAFIKNSLSPAEVEQVIILDRN 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN-------------- 350 +V QLSLAIG++G NVRLA++L W ID+ T ++ Sbjct: 304 KKHALAVVKDNQLSLAIGKQGLNVRLANRLVDWNIDVKTAKQVEEMGIGKEAMEAVSAVF 363 Query: 351 -RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVE 408 + E + + I +L +G+ ++E+L + I EE Sbjct: 364 SDLDEQVEEITRIEELPGLPPHIVEILSRQGYEEIEDLVFAYQDNGLEHIPELTEEDRQL 423 Query: 409 IQGRAREYLEGIDITLQKK 427 I + +E ++ + Sbjct: 424 IGKILEDAVEIVEEEETAQ 442 >gi|294783786|ref|ZP_06749110.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA] gi|294480664|gb|EFG28441.1| transcription termination factor NusA [Fusobacterium sp. 1_1_41FAA] Length = 353 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 220/354 (62%), Gaps = 4/354 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + VV+ ++ + +ISL+ A++ + IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRVKIGDVLKFEVSCDNFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ Sbjct: 241 KVAVYSQVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI E++ + Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDIKVLEKEEDDE 353 >gi|320449995|ref|YP_004202091.1| transcription termination factor NusA [Thermus scotoductus SA-01] gi|320150164|gb|ADW21542.1| transcription termination factor NusA [Thermus scotoductus SA-01] Length = 387 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 219/379 (57%), Gaps = 11/379 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY----------GTMSDIRVEINP 55 E + +A E+ + + VL ++++KA G ++ V I+P Sbjct: 2 NREFIDAMQQLALERGVTTEEVLEAFKEALRKAYIKRQKGYRKEEIDAGKGPEVDVYIDP 61 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 +TG I + + VVE+VE+ +I+L A DP + +G + P+ P R+A+Q + Sbjct: 62 QTGRIEMVEVRRVVEKVEDPDKEIALSEALQYDPEVQVGDEMEFPIDPEGLSRMAIQDLR 121 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRE 174 Q++ Q+++E+ER+R Y E+KDK G++++G V RV+ GNV V+LG + + + E I E Sbjct: 122 QILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRGEAYLPKSEQIPTE 181 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG R+K Y+ V R +GP +++SR H + + L EVPEI GIV++KA++R+PG Sbjct: 182 RYYPGQRLKVYLKKVDRSAKGPSLIVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIAREPG 241 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV + + ++DP+GAC+G +G R+QAV EL EK+DI++W+ D F+ NAL PA Sbjct: 242 RRSKVAVMTHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWAKDPKEFIRNALSPA 301 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V + L+ D + V V K+Q SLAIG GQNVRLAS+LTG+ I E ++ Sbjct: 302 QVGSIELEPDGQKARVKVTKDQHSLAIGTGGQNVRLASKLTGYEIHFEEAEISDLDEAIR 361 Query: 355 FNERTQFFMQAINVDEIIA 373 + + + +E Sbjct: 362 KAAKEEAETTSRAKEEFEK 380 >gi|227529106|ref|ZP_03959155.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC 49540] gi|227350950|gb|EEJ41241.1| transcription termination factor NusA [Lactobacillus vaginalis ATCC 49540] Length = 410 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 48/394 (12%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ D + EK I +++V+ + +++ A + YG ++ V+ + TG+I ++ + Sbjct: 7 NTEMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNYG-EKNVEVDFDGVTGNIKVYAV 65 Query: 66 LEVVEEV----ENYTCQISLKVARDR--DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + + E+ +SL AR D+G + + + P DFGR+A Q+AKQV++ Sbjct: 66 KTITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRP 178 Q++RE ER Y ++K EII+G V R + VDLG +G + + + E+ Sbjct: 126 QRLREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHI 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR++ Y+ V ++ GPQ+ +SRT P+ + +LF EVPEI +G V ++ ++R+ G RAK Sbjct: 186 HDRIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S+D ++DPVG CVG RGSRVQA+V EL E +DIV + D A F+ NAL PA V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLD 305 Query: 299 VVLDE----------------------------------------DVGRIEVIVPKEQLS 318 V+ +E + V+VP QLS Sbjct: 306 VIFNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLS 365 Query: 319 LAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 LAIG+RGQN RLA++LT + IDI E N Sbjct: 366 LAIGKRGQNARLAARLTKYKIDIKPASEMEDNTD 399 >gi|167751796|ref|ZP_02423923.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216] gi|167660037|gb|EDS04167.1| hypothetical protein ALIPUT_00037 [Alistipes putredinis DSM 17216] Length = 410 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 140/419 (33%), Positives = 232/419 (55%), Gaps = 12/419 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L+ K+ID+ ++ V+ D + A + + T + V INPE GD+ ++ Sbjct: 1 MDNLNLISNFAEFKELKNIDKATMIGVLEDVFRHALQKQFETDENFDVIINPEKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VEN QI++ + DP+ ++G DP+ FGR AV S +Q + + Sbjct: 61 RNRTVVEDGAVENPNMQIAVSEVKAIDPTYEVGDEYVDPIKLESFGRRAVLSLRQNLASR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGD 180 + + E+ Y ++ +KVGEII+G V +V V I+D ++ ++ + E I + R GD Sbjct: 121 ILDLEKANLYEKYSEKVGEIITGEVYQVWKKEVLILDDEGNELILPKTEQIPNDYYRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+A Sbjct: 181 TIKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITLKKIVRIPGERAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + AL PA ++ + Sbjct: 241 VESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTTNPQLMIQRALNPAKISSIT 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F + Sbjct: 301 IDEEKKTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREIEEEDVALTEFAD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D + L A G + + + + EIA+ + E A ++ + E Sbjct: 358 ------EIDGWVIDALKACGCDTAKSVLELPVEEIAARADLELEQAQKVVEILKAEFEE 410 >gi|182626384|ref|ZP_02954138.1| N utilization substance protein A [Clostridium perfringens D str. JGS1721] gi|177908335|gb|EDT70883.1| N utilization substance protein A [Clostridium perfringens D str. JGS1721] Length = 366 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 142/348 (40%), Positives = 221/348 (63%), Gaps = 4/348 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E L + EK I + +L + D+I A + + T +++V+ + ++G+I Sbjct: 2 NEEFLGALSEIVKEKGISVEALLETIDDAIIAAYKKNFSNSGTTAQNVKVKRDEKSGEIH 61 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ VVEEV + +ISL+ A+ + +V + P +FGRVA Q AKQ++IQ+ Sbjct: 62 VYAQKVVVEEVYDDVTEISLEDAKAISAIYQLDDIVEIEVTPKNFGRVAAQLAKQMVIQR 121 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++E+ER+ Y EF +K +I+ TV R + GNV VDLG +GV+ +E + E ++ Sbjct: 122 IKESERNVIYSEFAEKEFDILPSTVIRKDKGNVFVDLGKIEGVLGPNEQMPTEKYNFNEK 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V++ +G VL SRTHP + +LF +EVPEIY GIV++K+++R+ GSR K+AV Sbjct: 182 LQLYVVEVKKTSKGASVLCSRTHPGLVKRLFELEVPEIYEGIVEIKSIAREAGSRTKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S+D S+D +GACVG +G RVQ +V EL++EKIDI+ WS + ++ NAL PA V V Sbjct: 242 YSNDESVDAMGACVGPKGVRVQNIVNELKNEKIDIIKWSNTPSEYIENALSPAKVISVEA 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE+ +VIV QLSLAIG+ GQNVRLA++LTGW IDI ++ + Sbjct: 302 DEETKSAKVIVDDSQLSLAIGKEGQNVRLAAKLTGWKIDIKSKSKAEE 349 >gi|312867863|ref|ZP_07728068.1| transcription termination factor NusA [Streptococcus parasanguinis F0405] gi|311096618|gb|EFQ54857.1| transcription termination factor NusA [Streptococcus parasanguinis F0405] Length = 380 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 130/377 (34%), Positives = 212/377 (56%), Gaps = 15/377 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA Q+AKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQAAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI ++ E Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSDSEFEEMEV 363 Query: 353 KDFNERTQFFMQAINVD 369 Q VD Sbjct: 364 AQETFEDQVESSQEQVD 380 >gi|288574932|ref|ZP_06393289.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570673|gb|EFC92230.1| NusA antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 366 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 220/359 (61%), Gaps = 5/359 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + E+++ + ++L + ++ A + + V+I+ ETGDIS+ + Sbjct: 6 DFIRALMQLTEERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIMEIRR 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLP--PMDFGRVAVQSAKQVIIQKVRE 124 VV+EV+N +++ + A P + G VV + P FGR+A Q+A+QVIIQ++++ Sbjct: 66 VVDEVKNSDAELTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQRLKD 125 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 AER+ + EF ++VG++++G V + E ++V + ++ ++ R+E I+ E G R+K Sbjct: 126 AEREIIFNEFSERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGSRMK 185 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DVR+ RGP++++SRTHP + +L +E+PEI +G+V++ + R+ G+RAK+AV + Sbjct: 186 FYLLDVRQTTRGPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVAVTT 245 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302 D ++DPVGACVG GSR++ + EL EKID+V+WS D ++ N L PA V +V + Sbjct: 246 LDPNVDPVGACVGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVEPIL 305 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 E +V +QLSLAIG+ GQNVRLA++LTGW +DI E + + + Sbjct: 306 EQEKSAKVFARPDQLSLAIGKAGQNVRLAARLTGWKVDINPLEAPEKDSMPTLQDLFED 364 >gi|312862513|ref|ZP_07722755.1| transcription termination factor NusA [Streptococcus vestibularis F0396] gi|322517414|ref|ZP_08070287.1| transcription termination factor NusA [Streptococcus vestibularis ATCC 49124] gi|311101918|gb|EFQ60119.1| transcription termination factor NusA [Streptococcus vestibularis F0396] gi|322123896|gb|EFX95455.1| transcription termination factor NusA [Streptococcus vestibularis ATCC 49124] Length = 399 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 214/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG VE N +TGD +F + E Sbjct: 4 EMLEAFRVLEEEKHINKEDIIDAVVESLKSAYKRRYGQSESAVVEFNEKTGDFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVDEFGRVAAQSAKQTIMEKMRKQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y ++K GEI+ GTV+R + + V+LG + + R + I E+ + D + Y+Y Sbjct: 124 EITYNDYKQHEGEIMQGTVERFDQRFIYVNLGALEAQLSRQDQIPGESFKSHDVIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ VV+ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVVSRFHPTRLDAKTGIEVPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDYVLFDEDDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363 Query: 353 KDFNERTQFFMQAINVDE 370 + T+ + I +E Sbjct: 364 EKSEAATEEVVDEIVAEE 381 >gi|261881035|ref|ZP_06007462.1| N utilization substance protein A [Prevotella bergensis DSM 17361] gi|270332217|gb|EFA43003.1| N utilization substance protein A [Prevotella bergensis DSM 17361] Length = 424 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 146/417 (35%), Positives = 238/417 (57%), Gaps = 5/417 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++ ++ +K IDR ++SV+ +S + YG+ + V +NP+ GD ++R Sbjct: 10 QMSMIDTFREFKTDKDIDRTTLVSVLEESFRNVLAKKYGSDENFDVIVNPDKGDFEIYRN 69 Query: 66 LEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VVE EVE+ QISL A+ +P ++G VS+P+ FGR A+ + +Q + K+ Sbjct: 70 RVVVENGEVEDDNKQISLADAQKIEPDYEVGEDVSEPVDFAKFGRRAILTLRQTLASKIL 129 Query: 124 EAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 E E D Y ++KD+VG++ISG V + + ++VD N++ ++ R E I R+ R G+ + Sbjct: 130 ELEHDSLYNKYKDRVGQVISGEVYQVWKREVLLVDDENNELILPRSEQIPRDQYRKGETL 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ I V E P+++LSRT P FM +L EVPEI +G++ +K ++R PG RAK+AV Sbjct: 190 RAVIDRVENENNNPKIILSRTSPVFMERLLEQEVPEIADGLIAIKKIARMPGERAKIAVE 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA +T + LD Sbjct: 250 SYDDRIDPVGACVGVRGSRVHGIVRELCNENIDVINWTANTMLFIQRALSPAKITSISLD 309 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E+ + +V + E++SLAIGR G N++LAS LT +TID+ ++ Q++ + F Sbjct: 310 EENRKADVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVYRVVNENEQGQQEDDVYLDQF 369 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ I + A G + + + +EET + R+ E Sbjct: 370 --NDEIDQWIIDAIKAIGLDTAKAVMNAPREMLVERADLEEETVDHVLEVLRKEFES 424 >gi|306832818|ref|ZP_07465953.1| transcription termination factor NusA [Streptococcus bovis ATCC 700338] gi|304425053|gb|EFM28184.1| transcription termination factor NusA [Streptococcus bovis ATCC 700338] Length = 399 Score = 299 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGIEVPIEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 366 Query: 353 KDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 367 EHEANAAVTQEEVAPVEE 384 >gi|222153583|ref|YP_002562760.1| transcription elongation factor NusA [Streptococcus uberis 0140J] gi|222114396|emb|CAR43159.1| putative N utilization substance protein A [Streptococcus uberis 0140J] Length = 382 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 218/379 (57%), Gaps = 15/379 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N +TGD +F + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIEAVTESLKSAYKRRYGQSESCVIEFNEKTGDFQVFSVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALAISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRFDAKTGIEIPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + + Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYEASEA 363 Query: 353 KDFNERTQFFMQAINVDEI 371 + +Q + I+ +E Sbjct: 364 ALADLDSQEAEEVISNEEE 382 >gi|322391042|ref|ZP_08064546.1| transcription elongation factor NusA [Streptococcus parasanguinis ATCC 903] gi|321142272|gb|EFX37746.1| transcription elongation factor NusA [Streptococcus parasanguinis ATCC 903] Length = 380 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 131/377 (34%), Positives = 211/377 (55%), Gaps = 15/377 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLDRMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEMEA 363 Query: 353 KDFNERTQFFMQAINVD 369 Q VD Sbjct: 364 AQETFEDQVESGEEQVD 380 >gi|296269042|ref|YP_003651674.1| NusA antitermination factor [Thermobispora bispora DSM 43833] gi|296091829|gb|ADG87781.1| NusA antitermination factor [Thermobispora bispora DSM 43833] Length = 333 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 128/341 (37%), Positives = 200/341 (58%), Gaps = 24/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I D+V+ + D++ A G R E++ ETG ++++ Sbjct: 5 MSVLRSLEREKDISFDLVVKAIEDALLIAYHRTEGAAPKARAELDRETGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + ++ D P +F R+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AAELDENGEVIREYDD--TPSNFSRIAATTAKQVILQQLRDAEDEI 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + GE++SG +++ + V VDLG + ++ +E + E R GDR++ Y+ Sbjct: 103 NFGEFASREGELVSGVIQQGRDSRVVHVDLGKIEAILPPNEQVPGEEYRHGDRIRCYVVQ 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V++ +GP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 163 VKKGPKGPSVTLSRTHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G GSRV+ V+ EL EKIDI+ WS D A FV NAL PA V++V +D + Sbjct: 223 NAKGACIGPMGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPARVSRVEVVDRENRV 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V VP QLSLAIG+ GQN RLA++LTGW IDI + +++ Sbjct: 283 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTQEA 323 >gi|262282171|ref|ZP_06059940.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA] gi|262262625|gb|EEY81322.1| transcription termination factor NusA [Streptococcus sp. 2_1_36FAA] Length = 413 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 126/410 (30%), Positives = 218/410 (53%), Gaps = 15/410 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + E Sbjct: 4 EMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFNAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEA 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 + + + ++ + ++ A E + + D Sbjct: 364 ANELGGFGEVAEEVVYEDDANLTYTDQAMEEMTTAALATDLEESEVTELD 413 >gi|306830580|ref|ZP_07463747.1| transcription termination factor NusA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977559|ref|YP_004287275.1| transcription elongation protein nusA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304427298|gb|EFM30403.1| transcription termination factor NusA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177487|emb|CBZ47531.1| Transcription elongation protein nusA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 399 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 127 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 187 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 366 Query: 353 KDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 367 EREANAAVAQEEVAPVEE 384 >gi|237739230|ref|ZP_04569711.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31] gi|229422838|gb|EEO37885.1| transcription elongation factor NusA [Fusobacterium sp. 2_1_31] Length = 353 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 127/344 (36%), Positives = 215/344 (62%), Gaps = 4/344 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I ++ VL + ++ A + YG ++ V ++ E+G+I Sbjct: 1 MKAKDSKIFLEALDELEKEKGISKESVLEAIELALLAAYKKNYGEDENVEVIVDRESGEI 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + VV+ ++ + +ISL+ A++ IG V+ + +F R AVQ+ KQ++ Sbjct: 61 KVLASKTVVDADDLLDPNEEISLEDAKEIKKRAKIGDVLKFEVSCDNFRRNAVQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y +FK++ +I+SG ++R++ N+ +++ + ++ E + R Sbjct: 121 IQKVREAEREHIYEKFKERENDIVSGIIRRIDNKKNIFIEIDGIELILPPAEQSYSDIYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++Y+V + + P++L+SR + + KLF +E+PEI GI+++K+V+R+ GSRA Sbjct: 181 VGERIKVFVYNVEKTNKFPKILISRKNEGLLKKLFEIEIPEISAGIIEIKSVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G +G+R++ +V EL E+IDIV W FV L PA+V+ Sbjct: 241 KVAVYSEVPNIDTVGACIGQKGTRIKNIVDELNGERIDIVEWKESMEQFVSAVLSPAVVS 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + ED G +V+V QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVEILED-GTAKVLVEPSQLSLAIGKNGQNARLAARLTGTRVDI 343 >gi|72161180|ref|YP_288837.1| transcription elongation factor NusA [Thermobifida fusca YX] gi|71914912|gb|AAZ54814.1| transcription termination factor NusA [Thermobifida fusca YX] Length = 329 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 135/347 (38%), Positives = 202/347 (58%), Gaps = 24/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I D+V+ + D++ A R G ++ RVE++ TG ++++ Sbjct: 5 MSVLRSLEREKDISVDLVVKAIEDALLIAYRRQEGPDTNARVELDRATGHVTVWA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EE + I A P FGR+A +AKQVI+Q++R+AE + Sbjct: 60 EERDEEGRLIREYDA-----------------TPSGFGRIAASTAKQVILQRLRDAEDEI 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF + +I+SG V++ + NV+VDLG + ++ E + E G+R+++Y+ Sbjct: 103 TLGEFAGRESQIVSGVVQQGKDPRNVLVDLGRVEAILPPQEQVPTETYTHGERLRAYVVQ 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR RGP + LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + Sbjct: 163 VRRGHRGPSITLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVKSNKPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+ V+ ELR EKIDIV +S D A FV NAL PA VT V + D Sbjct: 223 NAKGACIGPLGSRVRNVMNELRGEKIDIVDYSDDPAQFVANALSPAQVTHVEVLDAAARV 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VIVP Q SLAIG+ GQN RLA++LTGW IDI ++ E + ++ Sbjct: 283 ARVIVPDYQQSLAIGKEGQNARLAARLTGWRIDIRSDTEMAEQHGEE 329 >gi|332298598|ref|YP_004440520.1| NusA antitermination factor [Treponema brennaborense DSM 12168] gi|332181701|gb|AEE17389.1| NusA antitermination factor [Treponema brennaborense DSM 12168] Length = 483 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 149/444 (33%), Positives = 233/444 (52%), Gaps = 18/444 (4%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + +K I D +L + ++++ A + +GT + V+ + + D++++ +V+ Sbjct: 7 DAIRQLTQDKGISEDAILQTIENTLKAAYKRKFGTSDNAVVKFSDDLSDVAIYSRKVIVD 66 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 V + +I L A + P ++G + + P +F R AVQ+ KQ Q + E ++D Sbjct: 67 GVYDPVTEIELDEALELSPECEVGDEIDILVDPKEFDRSAVQTGKQTAHQSLSEIQKDSL 126 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 + E+KDKVGEII G +R G++ VDLG +GV+ RE DR+K+ I DV+ Sbjct: 127 FAEYKDKVGEIIIGYYQRERNGSIYVDLGKIEGVLPAKNQSPRETYHKNDRIKALITDVK 186 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + G Q++LSRT P F+ + +EVPEIY+ V++ + R+PG R K+AVFS IDP Sbjct: 187 KTNSGLQLVLSRTDPDFVRAVVELEVPEIYDKTVEIHKIVREPGYRTKIAVFSHREDIDP 246 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309 VGACVG++G R+QAV+ EL EKIDI+ + PD F+ NAL PA V VV+ DE + Sbjct: 247 VGACVGLKGVRIQAVIRELEGEKIDILKYDPDPREFIKNALSPAEVLDVVILDESKRQAL 306 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR-------------QKDFN 356 +VP+EQ SLAIG++G NVRLA++L W+ID+ TE + D Sbjct: 307 AVVPEEQFSLAIGKQGLNVRLANRLADWSIDVKTEAQYEEFDSVVAESRKAVEQLFSDIP 366 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACV----KISEIASIEGFDEETAVEIQGR 412 E + VDE +A +L G D+E+ I +I + D + Sbjct: 367 ETIASVAELPGVDEQVAAVLKENGIEDIEQFMQSVESGAIRQIEGLSDTDITAVQSLIND 426 Query: 413 AREYLEGIDITLQKKIRELGVSEE 436 E++E + E +E Sbjct: 427 TVEFVEDPAPVAAESAAEQIEEDE 450 >gi|154249422|ref|YP_001410247.1| transcription elongation factor NusA [Fervidobacterium nodosum Rt17-B1] gi|154153358|gb|ABS60590.1| NusA antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 344 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 128/336 (38%), Positives = 206/336 (61%), Gaps = 2/336 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL+ + EK I D + ++ ++ A ++ G ++ + IN +G+I +++LEV Sbjct: 6 LLEALRELEREKGISVDESIEILEKALMSAYKNKTG-ERNVEIVINKLSGEIEAYQILEV 64 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VE+VEN QISL+ A P IG +V + GR A+Q AKQV+IQK+RE E++ Sbjct: 65 VEKVENENIQISLEDALKIKPDATIGDIVKRKMNIKRLGRFAIQVAKQVLIQKIREIEKE 124 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +QY ++ + VG +++ V +V + + +G + + + E I E D +K Y+ + Sbjct: 125 KQYEKYAELVGRVVTAEVLKVTPEWLDIRIGKLETHLPKKEWIPGEEFEQSDLIKVYVRE 184 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V+++++GP+++++R +F+V L +EVPEI +GI+++ + R+PG R K+AV S D + Sbjct: 185 VKKDKKGPKIIVTRIDNEFVVGLLKLEVPEIESGIIEIVKIVREPGVRTKIAVISHDPKV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DPVG+C+G GSR+ ++ EL+ EKIDI+ WS D + NAL PA V V + D + Sbjct: 245 DPVGSCIGPEGSRIAPILKELKIEKIDIIKWSNDPKELIANALLPASVIDVEILDYESKA 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 V+V QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 305 SRVLVSPNQLSLAIGKAGQNARLAAKLTGWKIDIKP 340 >gi|288904585|ref|YP_003429806.1| transcription termination factor NusA [Streptococcus gallolyticus UCN34] gi|288731310|emb|CBI12861.1| Transcription termination factor NusA [Streptococcus gallolyticus UCN34] Length = 396 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E + + GD ++ + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIDAVKESLKSAYKRRYGQSESCVIEFDDKKGDFKVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLSDALKISSAYELGDKIRFEESVAEFGRVAAQSAKQTIMEKMRRQIR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+K GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTYNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HPQF+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPQFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKAGVEVPIEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDEEDSKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEALEA 363 Query: 353 KDFNERTQFFMQAINVDE 370 + + V+E Sbjct: 364 EREANAAVAQEEVAPVEE 381 >gi|322391412|ref|ZP_08064882.1| transcription elongation factor NusA [Streptococcus peroris ATCC 700780] gi|321145838|gb|EFX41229.1| transcription elongation factor NusA [Streptococcus peroris ATCC 700780] Length = 378 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 212/370 (57%), Gaps = 15/370 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNERTQFF 362 + Sbjct: 364 AGQVDFADTD 373 >gi|296877069|ref|ZP_06901110.1| transcription termination factor NusA [Streptococcus parasanguinis ATCC 15912] gi|296431930|gb|EFH17736.1| transcription termination factor NusA [Streptococcus parasanguinis ATCC 15912] Length = 380 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 131/377 (34%), Positives = 211/377 (55%), Gaps = 15/377 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQSESAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E + DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFQSHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ E ID++ W PD A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDQKLERMVPTEENIDVIEWVPDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDDEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEEMEA 363 Query: 353 KDFNERTQFFMQAINVD 369 Q VD Sbjct: 364 AQETFEDQVESGEEQVD 380 >gi|322387178|ref|ZP_08060788.1| transcription elongation factor NusA [Streptococcus infantis ATCC 700779] gi|321141707|gb|EFX37202.1| transcription elongation factor NusA [Streptococcus infantis ATCC 700779] Length = 378 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 213/370 (57%), Gaps = 15/370 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNERTQFF 362 + + Sbjct: 364 AGQVDYAETD 373 >gi|325110092|ref|YP_004271160.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324970360|gb|ADY61138.1| NusA antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 496 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 146/420 (34%), Positives = 240/420 (57%), Gaps = 36/420 (8%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N E+L+I DA+ +K ID+++V + +I A R YG ++ V I+ +G S+ Sbjct: 1 MNASEVLRIVDAIHRDKGIDKEIVFEGIEQAILTALRKYYGDEDELIVLIDRNSGAPSVQ 60 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + L P GR+A Q+AKQV+IQK+R Sbjct: 61 HN--------------------------------GEYLDPDILGRIAAQTAKQVMIQKIR 88 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD Y EF ++ ++++GTV R+E+G V++G + ++ R E I E+ R +R++ Sbjct: 89 EAERDALYDEFIEQKSQLLTGTVTRLEHGVATVNIGKVEAILPRSEQIPGESHRVNERIR 148 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I DVR+ +++LSR HP F+ +LF +E+PEI +++V++++R+ G R K+AV Sbjct: 149 AVITDVRKAGSRIKIVLSRVHPDFVRRLFEVEIPEIAENVIEVRSLAREAGYRTKIAVSC 208 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D+SID VGACVG+RG+R++ +V EL E+IDIV W+ + NAL+PA V V+L Sbjct: 209 YDNSIDAVGACVGVRGARIRNIVDELSGERIDIVRWNDSLQILIPNALQPAEVEDVILCP 268 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR+ V+V +QLSLAIG++GQNVRLAS+L GW I+++T +E ++ ++ + Sbjct: 269 MLGRVIVLVRDDQLSLAIGKKGQNVRLASKLVGWDIEVMTRDELDEQLERSVIAFSEVPL 328 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 V E +A LV++GF ++L+ ++ + + G +E EI A ++ Sbjct: 329 ----VTEDLAESLVSQGFFSFDDLSVIEPEHLVELSGLTDEQCDEIIEHADAESLRLEQE 384 >gi|196019394|ref|XP_002118970.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens] gi|190577493|gb|EDV18544.1| hypothetical protein TRIADDRAFT_62947 [Trichoplax adhaerens] Length = 348 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 150/338 (44%), Positives = 237/338 (70%), Gaps = 11/338 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A+AVA +K I ++ ++ + +++ AA+ YG ++ IN G+I L+R + Sbjct: 10 EILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYREVL 69 Query: 68 VV----------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VV +E I + A++ DP I+ G V+ LPP++ GR+ SAKQ+ Sbjct: 70 VVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAKQI 129 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 II KV+E E+D+ + E+K++VGE+++G V+++E G IV LG+++ ++++D+T+ + + Sbjct: 130 IINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLGSAEAILKKDQTLKTDFYK 189 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+++ + + +E GP ++LSRTH F+++LF EVPEIY+ I++VK ++RDPGSR Sbjct: 190 LGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPGSRT 249 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA-IV 296 K+AV+SSD SIDPVG+CVGMRG RVQA++ EL+ EKIDIV WS D ATFV+N+L + V Sbjct: 250 KIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSSIRV 309 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 +KV++DE+ +IE+IVP+E S AIGRRGQN++L S+L Sbjct: 310 SKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISEL 347 >gi|54026039|ref|YP_120281.1| transcription elongation factor NusA [Nocardia farcinica IFM 10152] gi|54017547|dbj|BAD58917.1| putative transcriptional termination/antitermination factor [Nocardia farcinica IFM 10152] Length = 342 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 32/363 (8%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + A+ +K I + V+S + ++ A R G + RV+IN TG + + Sbjct: 2 NIEI-EALRAIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVM-- 58 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 AR+ D ++ D P FGR+A +A+QV++Q++R+A Sbjct: 59 ------------------ARELDADGNVISEWDD--TPEGFGRIAATTARQVVLQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLR 177 E ++ + EF G+I+ G V+R N V+V +G ++G+I E + E Sbjct: 99 ENEKSFGEFSTHEGDIVGGVVQRDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYE 158 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+K Y+ V R RGPQ+ LSRTHP + +LF +EVPEI +G V++ AV+R+ G R+ Sbjct: 159 HGDRIKCYVVGVSRGPRGPQITLSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRS 218 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S+ ++ GAC+G G RV+ V++EL EKIDI+ ++ D ATFV NAL P+ V Sbjct: 219 KIAVRSTVPGVNAKGACIGPMGQRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVV 278 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 V + D D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 279 SVTIVDPDARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPDVGDGMRTE 338 Query: 357 ERT 359 Sbjct: 339 AHR 341 >gi|289167249|ref|YP_003445516.1| transcription termination-antitermination factor [Streptococcus mitis B6] gi|288906814|emb|CBJ21648.1| transcription termination-antitermination factor [Streptococcus mitis B6] Length = 378 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 211/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 >gi|320103081|ref|YP_004178672.1| NusA antitermination factor [Isosphaera pallida ATCC 43644] gi|319750363|gb|ADV62123.1| NusA antitermination factor [Isosphaera pallida ATCC 43644] Length = 520 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 160/418 (38%), Positives = 245/418 (58%), Gaps = 37/418 (8%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+L +I D + EK I +D+++ + +I AAR + + + I+P+T I R Sbjct: 3 LDLPRIIDTIHREKGIPKDLLIDAIQTAILNAARKFFNDSEGLSITIDPQTLKIDATRG- 61 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 + + P FGR+A Q+AKQ++IQK REAE Sbjct: 62 -------------------------------GERVDPAVFGRIAAQTAKQIMIQKFREAE 90 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD + EF+ + G++++GTV+R E G V+V+LG +D ++ R E I E L PGDR+++ + Sbjct: 91 RDTLFEEFESQKGDLLTGTVQRFEGGAVLVNLGKTDAILPRPEQIPGEALHPGDRIRAVV 150 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 ++V+++ + +++LSRTHP F+ KLF +E+PEI + +Q++A++R+ G R K+AV S D Sbjct: 151 HEVKKQGQRVKIILSRTHPDFVRKLFELEIPEIADNTIQIRALAREAGYRTKVAVASVDP 210 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +D VGACVG+RGSR++ + EL E+IDIV W+ + NAL PA + +V+L +G Sbjct: 211 KVDAVGACVGVRGSRIKTITDELGGERIDIVRWNDSLQVLIPNALAPAEIDEVMLCGLLG 270 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAI 366 R V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T EE Q F Q Sbjct: 271 RAIVLVRDDQLSLAIGRRGQNVRLASKLVGWDIEIMTAEELDEVID----RAIQMFTQIE 326 Query: 367 NVDEIIAHLLVAEGFADVEELACVKISE-IASIEGFDEETAVEIQGRAREYLEGIDIT 423 VD +A LV +G ++L+ ++I + +A+IEG D E A+ I A E E Sbjct: 327 GVDAELAQNLVEQGILSYDDLSVMEIDDLVATIEGLDHERAIRIVEAAEELAEQQSEE 384 >gi|270292191|ref|ZP_06198406.1| N utilization substance protein A [Streptococcus sp. M143] gi|270279719|gb|EFA25561.1| N utilization substance protein A [Streptococcus sp. M143] Length = 378 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNER 358 + Sbjct: 364 AGQVDY 369 >gi|256371439|ref|YP_003109263.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256008023|gb|ACU53590.1| NusA antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 330 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 134/350 (38%), Positives = 211/350 (60%), Gaps = 24/350 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E++ + +A EK + + +L +A+++ A + G + VEI+P +G I + Sbjct: 5 NPEVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIRVIC- 63 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++ D + + V P DFGR+A Q+AKQV++QK+REA Sbjct: 64 -------------------QELDENGTV--VREWEDTPRDFGRIAAQAAKQVMLQKIREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+++Y E+ + G++++G V +++ ++DLG + ++ E+ S E R+K+Y Sbjct: 103 EREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGKIEAIMPHSESPSNERYSVNQRLKAY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I +VRR +GPQ+++SRTHP + +LF +EVPEI +G+V+VKA++R+PG R K+AV+S+D Sbjct: 163 IVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAVWSND 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 S+DPVGACVG RGSRV VV EL EK+DIV +S D A FV A+ PA + + Sbjct: 223 RSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATV--EG 280 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+VP +QLSLAIGR GQN RLA++LTG ++I + E ++ Sbjct: 281 RDALVVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSEVEGRQEGQP 330 >gi|300788185|ref|YP_003768476.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] gi|299797699|gb|ADJ48074.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] Length = 348 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 202/366 (55%), Gaps = 27/366 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + V+ + ++ A + G S R++I+ +TG + + Sbjct: 5 IAALRAIERDKDIPFETVIEAIETALLTAYKHTEGHQSHARIDIDRKTGLVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------AHTLTHDGQVDEEWDD--TPEGFGRIAATTARQVILQRLRDAEHEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF K GEI++G ++R N V+V +G+++GV+ E ++ E+ G R+K+Y Sbjct: 103 TFGEFSTKEGEIVAGVIQRDARANARGMVVVQVGDTEGVLPSGEQVAGESYEHGSRIKAY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSR+HP + KLF +EVPEI +G V++ AV+R+PG R K+AV S+ Sbjct: 163 VVTVSRSNRGPQITLSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRTKIAVKSTV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ +S D A FV NAL PA V V +DE Sbjct: 223 PGVNAKGACIGPVGARVRNVMSELAGEKIDIIDFSEDPARFVGNALSPAKVVSVRVVDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + R Sbjct: 283 AKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPVDDEGDQDHARPPRPAA 342 Query: 365 AINVDE 370 E Sbjct: 343 TTGSAE 348 >gi|326799022|ref|YP_004316841.1| NusA antitermination factor [Sphingobacterium sp. 21] gi|326549786|gb|ADZ78171.1| NusA antitermination factor [Sphingobacterium sp. 21] Length = 411 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 132/395 (33%), Positives = 231/395 (58%), Gaps = 10/395 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYTC 77 K+IDR V+SV+ + + R +GT + V +NP+ GD+ ++R VVE+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMIRKRFGTDENCDVIVNPDNGDLEIWRTRTVVEDEFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L AR DP ++IG + + FGR A+ +A+Q ++ KV E E+D + ++KD+ Sbjct: 77 EIELAEARKVDPDLEIGDDFIEEITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGEI++G V + + +++D ++ ++ + E I + + GD +++ +Y V P Sbjct: 137 VGEIVTGEVYQIWKKETLVLDDEGNELILPKTEQIPADYFKKGDTIRAVVYKVDMMNTTP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 197 KIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + LD++ R V + +Q Sbjct: 257 MKGSRIHGIVRELRNENIDVINFTNNISLYIQRALSPARISSIKLDDEEKRAAVYLQSDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LA +LTG+ ID+ E +++ A +D I Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYRESDENDED-------VDLEEFADEIDGWILDEF 369 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 G + + + + E+ +E T E+ Sbjct: 370 KRVGLDTAKSVLALSMDELVRRTDLEENTIQEVVQ 404 >gi|149178853|ref|ZP_01857433.1| transcription elongation factor NusA [Planctomyces maris DSM 8797] gi|148842328|gb|EDL56711.1| transcription elongation factor NusA [Planctomyces maris DSM 8797] Length = 494 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 154/410 (37%), Positives = 242/410 (59%), Gaps = 32/410 (7%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + E+L+I DA+ +KSID+++V + +I AAR +G ++ V+I+ +TG+ ++ Sbjct: 1 MDGKEVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTGEPTVL 60 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 G + + GRVA Q+AKQV+IQK+R Sbjct: 61 CD----------------------------GDKLGKDILGEILGRVAAQTAKQVMIQKIR 92 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD + E+ + + +SGTV RVE G V+V+LG +G++ R E I E+ R DRV+ Sbjct: 93 EAERDTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGKIEGILPRGEQIPGESFRVNDRVR 152 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + DVR+ +V+LSRTHP + +LF +E+PE+ + I+ V++++R+ G R+K+AV Sbjct: 153 AVVLDVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSC 212 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DSSID VGACVGMRG+R++ +V EL E+IDIV W+ V N+L+PA V V+L Sbjct: 213 IDSSIDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCP 272 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 +GR+ V+V +QL LAIGR+GQNVRLAS+L GW I+++T+ E ++ + F Sbjct: 273 MLGRVIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMTQTELDE----QLDKTVEAFS 328 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 V E +A LV++GF +L+ ++ ++A + G E +I A Sbjct: 329 SIPGVSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQIVEVA 378 >gi|325105520|ref|YP_004275174.1| NusA antitermination factor [Pedobacter saltans DSM 12145] gi|324974368|gb|ADY53352.1| NusA antitermination factor [Pedobacter saltans DSM 12145] Length = 411 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 222/381 (58%), Gaps = 10/381 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R +GT + V +NP+ GD+ ++R V+E+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKRFGTDENCDVIVNPDNGDLEIWRTRTVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A DP +++G + + FGR A+ +A+Q ++ K+ E E+D + +KD+ Sbjct: 77 EIELADAHKIDPDLEVGDDFIEQITLESFGRRAILAARQTLVSKILELEKDEIFKNYKDR 136 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +GEI++G V + + +++D ++ ++ + E I + + GD V++ + V P Sbjct: 137 IGEIVTGEVYQVWKKETLVLDDEGNELILPKTEQIPADYFKKGDSVRAVVLKVDMMNANP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRT P F+ +LF +EVPE+++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 197 KIIISRTAPAFLQRLFELEVPEVFDGLITIKNIVREPGERAKVAVESYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V EL++E ID++ ++ + + ++ AL PA ++ + LD++ R V + +Q Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNISLYIQRALSPAKISSIKLDDETKRAAVYLKPDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LA +LTG+ ID+ E + + +D I L Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREASEEDEDVDLDE-------FSDEIDSWIIDEL 369 Query: 377 VAEGFADVEELACVKISEIAS 397 G + + + ++E+ Sbjct: 370 KKVGLDTAKSVLALNVNELVK 390 >gi|224543310|ref|ZP_03683849.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM 15897] gi|224523843|gb|EEF92948.1| hypothetical protein CATMIT_02510 [Catenibacterium mitsuokai DSM 15897] Length = 435 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 139/395 (35%), Positives = 229/395 (57%), Gaps = 7/395 (1%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFRLLEVVE 70 + + +K +D +V+ + +++ K+ + Y GT S + I+ + G I +F VV+ Sbjct: 11 ALENLIEDKGLDSAIVIEALTEALAKSYKKNYCGTESIVDCRIDGD-GQIRIFITHHVVD 69 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +V + + S++ A++ DP +G V + +FGR+A KQ++ QK+REAE++ Sbjct: 70 DVNDEDYEYSIEEAQEIDPKYQVGDEVVEEADISEFGRLAAIQTKQLLRQKIREAEKEAL 129 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 Y E+ +K+ EII+GTV RVE I+++G + ++ + I E L G+ VK Y+ +V Sbjct: 130 YNEYINKLDEIINGTVDRVEERFAIINIGKTGALLSSKDQIPGETLVEGEHVKVYVSEVE 189 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +G + +SRTH + +LF MEVPEI+ G V++K+VSR+ G R+K+AV++++ IDP Sbjct: 190 RTTKGTHISVSRTHEGLVKRLFEMEVPEIFEGTVEIKSVSREAGERSKIAVYTANPDIDP 249 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +GACVG +G+RV+ VV EL E IDI+ WS D TF+ +AL PA V +V L+ V Sbjct: 250 IGACVGPKGNRVRNVVEELNGEMIDIIEWSDDPVTFISHALSPAKVERVKLNHAKNSALV 309 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 +VP +QLSLAIG+RGQN RLA +LT W IDI S++ + + + E Sbjct: 310 VVPDDQLSLAIGKRGQNARLAVKLTNWKIDI-----KSVSEILEEGIDLDAPEVDMELLE 364 Query: 371 IIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + + +E + + E + +E+ Sbjct: 365 KMKKSMEEHEADEEKETITLTLDEDKVEDKVEEDL 399 >gi|306830060|ref|ZP_07463246.1| transcription termination factor NusA [Streptococcus mitis ATCC 6249] gi|304427773|gb|EFM30867.1| transcription termination factor NusA [Streptococcus mitis ATCC 6249] Length = 378 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNER 358 + Sbjct: 364 AGQVDY 369 >gi|306824618|ref|ZP_07457963.1| transcription termination factor NusA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433186|gb|EFM36157.1| transcription termination factor NusA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 378 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNER 358 + Sbjct: 364 VGQVDY 369 >gi|226226960|ref|YP_002761066.1| transcription elongation protein NusA [Gemmatimonas aurantiaca T-27] gi|226090151|dbj|BAH38596.1| transcription elongation protein NusA [Gemmatimonas aurantiaca T-27] Length = 438 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 156/420 (37%), Positives = 239/420 (56%), Gaps = 12/420 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 A ++L ++ K I R+ + ++ D I A +G VEI+ G+I + Sbjct: 2 AGSADILTALRELSNLKQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIV 61 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L VV+EV + + +++++ AR DP +G V+ P+ M+FGR AVQ+AKQ IIQ+VR Sbjct: 62 LLKTVVDEVTDESREVTVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVR 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN---SDGVIRRDETISRENLRPGD 180 E ER R EF +VG+++SG V+++E G ++V L ++ +I E RE+ G+ Sbjct: 122 EGERTRIRDEFAGRVGDLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGE 181 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ + V +GP+++LSR+ F+ LF +EVPEI GIV++KA +R+ GSR K+A Sbjct: 182 PVRAVLKRVEDTPKGPRLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ++DPVGACVG++G+RVQAVV EL E+IDIV WSPD F AL PA V +V Sbjct: 242 VTSRDEAVDPVGACVGLKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVF 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI---------NR 351 D I+ +V ++QLSLAIGR GQNVRLAS+LTGW ID+ + E Sbjct: 302 SDAASRTIQAVVDEDQLSLAIGRNGQNVRLASELTGWKIDLYSSREWLEKGGEAPLFAPL 361 Query: 352 QKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 ++ E + ++ +L G+ + ++ + ++ + G E A I Sbjct: 362 PEETEEADVPLNEIEGLETATVAVLAEAGYRTLNDILDLDRDDLLRLPGIAPEEADRIMA 421 >gi|293364176|ref|ZP_06610903.1| transcription elongation factor NusA [Streptococcus oralis ATCC 35037] gi|315611732|ref|ZP_07886654.1| transcription termination factor NusA [Streptococcus sanguinis ATCC 49296] gi|291317354|gb|EFE57780.1| transcription elongation factor NusA [Streptococcus oralis ATCC 35037] gi|315316147|gb|EFU64177.1| transcription termination factor NusA [Streptococcus sanguinis ATCC 49296] Length = 378 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNER 358 + Sbjct: 364 AGQVDY 369 >gi|291513589|emb|CBK62799.1| transcription termination factor NusA [Alistipes shahii WAL 8301] Length = 409 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 139/418 (33%), Positives = 232/418 (55%), Gaps = 12/418 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L+ K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++ Sbjct: 1 MDNLNLISNFAEFKELKNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE+ QIS+ + DP+ +IG +D + FGR AV S +Q + + Sbjct: 61 RNRTVVEDDAVEDPNAQISVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGD 180 + + E+ Y ++ +KVG+I++G V +V V I+D ++ ++ + E I + R GD Sbjct: 121 ILDLEKASLYEKYSEKVGDIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+A Sbjct: 181 TIKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + +L PA V+ + Sbjct: 241 VESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTANPTLMIQRSLNPAKVSSIT 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F + Sbjct: 301 IDEEKMTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREVEEEDVALTEFAD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D + L A G + + + + EIA+ + E A ++ + E Sbjct: 358 ------EIDGWVIDALKAAGCDTAKSVLELPVEEIAARADLELEQAQKVVEILKAEFE 409 >gi|253581490|ref|ZP_04858715.1| transcription elongation factor NusA [Fusobacterium varium ATCC 27725] gi|251836560|gb|EES65095.1| transcription elongation factor NusA [Fusobacterium varium ATCC 27725] Length = 361 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 137/353 (38%), Positives = 214/353 (60%), Gaps = 3/353 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+ Sbjct: 1 MKSKDAKVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 L+ + VVE ++ + +ISL A++ +G +V + +F R A+Q+ KQ++ Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER Y FK+K +II+G ++R E N+ V+ + ++ E + R Sbjct: 121 IQKVREAERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+SSD +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V Sbjct: 241 KVAVYSSDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE + Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKDD 353 >gi|325000941|ref|ZP_08122053.1| transcription elongation factor NusA [Pseudonocardia sp. P1] Length = 344 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 194/345 (56%), Gaps = 25/345 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 A+ +K I + VL + ++ A R G SD RV+I+ +TG + + Sbjct: 7 ALRAIERDKEIPFETVLEAIETALLTAYRHTEGHHSDARVDIDRKTGVVRVLAR------ 60 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 A D G D P FGR+A +A+QVI+Q++R+AE +R Y Sbjct: 61 -----------DASDAAEDGTPGPEFDD--TPEGFGRIAATTARQVIVQRLRDAEHERTY 107 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGN-SDGVIRRDETISRENLRPGDRVKSYI 186 EF K GE+++G V+R N VIV+LG ++ V+ E + E + G+R++ Y+ Sbjct: 108 GEFSTKEGEVVAGIVQRDARANARGVVIVELGGGTEAVLPAAEQVPGEVYQHGERIRCYV 167 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V R RG + LSRTHP + KLF +EVPE+ +G +++ +V+R+ G R+K+AV S+ Sbjct: 168 IGVARGPRGTTITLSRTHPNLVRKLFALEVPELVDGSIEIVSVAREAGFRSKIAVRSARP 227 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDV 305 ++ GAC+G G+RV+ V+ EL EKIDI+ WS D FV NAL P+ V V + DE Sbjct: 228 GLNAKGACIGPMGARVRGVMGELAGEKIDIIDWSEDPGEFVGNALSPSKVVSVTVLDERA 287 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 288 RIARVVVPDFQLSLAIGKEGQNARLAARLTGWKIDIRSDADPRDP 332 >gi|50903880|gb|AAT87595.1| N utilization substance protein A [Streptococcus pyogenes MGAS10394] gi|71803212|gb|AAX72565.1| N utilization substance protein A [Streptococcus pyogenes MGAS6180] gi|94548429|gb|ABF38475.1| N utilization substance protein A [Streptococcus pyogenes MGAS10750] Length = 396 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D + Sbjct: 10 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQV 69 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+ Sbjct: 70 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 129 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Sbjct: 130 RRQMREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV Sbjct: 190 DVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288 S + ++D +G VG GS ++ V+++ E ID++ W D A F+ Sbjct: 250 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIY 309 Query: 289 NALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NA+ PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 310 NAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEY 369 Query: 348 SINRQKD 354 + Sbjct: 370 DRLEAEK 376 >gi|94544550|gb|ABF34598.1| N utilization substance protein A [Streptococcus pyogenes MGAS10270] Length = 396 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D + Sbjct: 10 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQV 69 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+ Sbjct: 70 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 129 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Sbjct: 130 RRQMREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV Sbjct: 190 DVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288 S + ++D +G VG GS ++ V+++ E ID++ W D A F+ Sbjct: 250 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIY 309 Query: 289 NALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NA+ PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 310 NAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEY 369 Query: 348 SINRQKD 354 + Sbjct: 370 DRLEAEK 376 >gi|300812554|ref|ZP_07092971.1| transcription termination factor NusA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496427|gb|EFK31532.1| transcription termination factor NusA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 403 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 219/370 (59%), Gaps = 3/370 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVRVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSNDP 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304 +IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V ++ D Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363 Query: 365 AINVDEIIAH 374 Sbjct: 364 QDLQQTEAEE 373 >gi|325688733|gb|EGD30742.1| N utilization substance protein A [Streptococcus sanguinis SK115] Length = 420 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A IE EE Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAAAEETVLETAGIESEAEEL 419 >gi|251783184|ref|YP_002997489.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391816|dbj|BAH82275.1| N utilization substance protein A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 404 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 210/371 (56%), Gaps = 15/371 (4%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D + Sbjct: 18 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQV 77 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+ Sbjct: 78 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 137 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Sbjct: 138 RRQMREVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 197 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV Sbjct: 198 EVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 257 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288 S + ++D +G VG GS ++ V+++ E ID++ W D A F+ Sbjct: 258 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIY 317 Query: 289 NALRPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NA+ PA V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 318 NAIAPAEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDY 377 Query: 348 SINRQKDFNER 358 + Sbjct: 378 DRLEAEKEAAM 388 >gi|322376136|ref|ZP_08050645.1| transcription termination factor NusA [Streptococcus sp. C300] gi|321278904|gb|EFX55948.1| transcription termination factor NusA [Streptococcus sp. C300] Length = 378 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLETFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNER 358 + Sbjct: 364 AGQVDY 369 >gi|255530056|ref|YP_003090428.1| transcription elongation factor NusA [Pedobacter heparinus DSM 2366] gi|255343040|gb|ACU02366.1| transcription termination factor NusA [Pedobacter heparinus DSM 2366] Length = 411 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 130/395 (32%), Positives = 229/395 (57%), Gaps = 10/395 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R YGT + V +NP+ GD+ ++R +V+E+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L + DP +++G + + FGR A+ +A+Q ++ KV E E+D + ++KD+ Sbjct: 77 EIELAEVKQLDPDMEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGEI++G V + + +++D ++ ++ + E I + + GD V++ I V P Sbjct: 137 VGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFKKGDTVRAVILKVDMVNATP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SR P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 197 KIIISRIAPEFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T + LD++ V + +Q Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LA +LTG+ ID+ E + + +D I L Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREAGEEDEDVDIEE-------FSDEIDSWIIDEL 369 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 A G + + + + E+ +EET E+ Sbjct: 370 KAIGCDTAKSVLALSVDELVKRTDLEEETIKEVMS 404 >gi|313158663|gb|EFR58052.1| transcription termination factor NusA [Alistipes sp. HGB5] Length = 410 Score = 296 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 139/419 (33%), Positives = 233/419 (55%), Gaps = 12/419 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L+ K+ID+ ++ V+ D + A + Y T + V INPE GD+ ++ Sbjct: 1 MDNLNLISNFAEFKELKNIDKSTMIGVLEDVFRHALQKQYETDENFDVIINPEKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE+ QI++ + DP+ +IG +D + FGR AV S +Q + + Sbjct: 61 RNRTVVEDGAVEDPNAQIAVSEVKAIDPTYEIGDEYADEIKLSSFGRRAVLSLRQNLASR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGD 180 + + E+ Y ++ +KVGEI++G V +V V I+D ++ ++ + E I + R GD Sbjct: 121 ILDLEKASLYEKYSEKVGEIVTGEVYQVWKKEVLILDDEENELILPKAEQIPNDFYRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V P+++LSRT QF+ +LF EVPEI++G++ +K + R PG RAK+A Sbjct: 181 TIKAIVKSVEMNNNQPRIILSRTANQFLERLFEQEVPEIFDGLITIKKIVRIPGERAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V ELR+E ID+V ++ + + + AL PA ++ + Sbjct: 241 VESYDERIDPVGACVGMKGSRIYSIVKELRNENIDVVNYTANPSLMIQRALNPAKISSIT 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ V + +Q+SLAIG+ G N+RL+ LTG+ ID+ E E+ +F + Sbjct: 301 IDEEKMTASVYLKPDQVSLAIGKGGLNIRLSKMLTGYDIDVYREVEEEDVALTEFAD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D I L + G + + + + EIA+ + E A ++ + E Sbjct: 358 ------EIDGWIIDALKSVGCDSAKSVLELPVEEIAARADLELEQAQKVVAILKAEFEE 410 >gi|327462402|gb|EGF08727.1| N utilization substance protein A [Streptococcus sanguinis SK1057] Length = 420 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + +A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSGAEATDFDAVAEETVLETAGLESEAEEL 419 >gi|307707652|ref|ZP_07644133.1| transcription termination factor NusA [Streptococcus mitis NCTC 12261] gi|307616365|gb|EFN95557.1| transcription termination factor NusA [Streptococcus mitis NCTC 12261] Length = 378 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 211/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 >gi|324994121|gb|EGC26035.1| N utilization substance protein A [Streptococcus sanguinis SK678] Length = 420 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A IE EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGIESEAEEL 419 >gi|327472754|gb|EGF18181.1| N utilization substance protein A [Streptococcus sanguinis SK408] Length = 420 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + +A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAVAEETVLETAGLESEAEEL 419 >gi|309799813|ref|ZP_07694020.1| transcription termination factor NusA [Streptococcus infantis SK1302] gi|308116529|gb|EFO53998.1| transcription termination factor NusA [Streptococcus infantis SK1302] Length = 378 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 214/370 (57%), Gaps = 15/370 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPGEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEA 363 Query: 353 KDFNERTQFF 362 + ++ + Sbjct: 364 AEQADQVETD 373 >gi|322377700|ref|ZP_08052190.1| transcription termination factor NusA [Streptococcus sp. M334] gi|321281465|gb|EFX58475.1| transcription termination factor NusA [Streptococcus sp. M334] Length = 378 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 211/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 >gi|205373420|ref|ZP_03226224.1| transcription elongation factor NusA [Bacillus coahuilensis m4-4] Length = 286 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 104/267 (38%), Positives = 176/267 (65%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL D + EK I RD+++ + ++ A + + ++RV+++ E G I +F E Sbjct: 4 ELLDALDYLEKEKGIARDILIDAIEAALVSAYKRNFNQAQNVRVDLHQENGTIRVFARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V++V + +IS++ A+ P ++G +V + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 IVDQVFDPRLEISIEDAKQIHPGYEVGDIVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R++ + V LG + ++ E + E+ +P DR+K ++ Sbjct: 124 GIIYSEFIDREEDIMTGIVQRLDNRYIYVALGKIEALLPISEQMPNESYKPHDRIKVFLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF +EVPEI++G V++K+VSR+ G R+K++V + + Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEIEVPEIFDGTVEIKSVSREAGDRSKISVHAENPE 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKI 274 +DPVGACVG +G+RVQA+V EL+ EK+ Sbjct: 244 VDPVGACVGSKGTRVQAIVNELKGEKL 270 >gi|257439271|ref|ZP_05615026.1| transcription termination factor NusA [Faecalibacterium prausnitzii A2-165] gi|257198146|gb|EEU96430.1| transcription termination factor NusA [Faecalibacterium prausnitzii A2-165] Length = 358 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 138/355 (38%), Positives = 209/355 (58%), Gaps = 7/355 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLEVV--EE 71 + +E+ I + ++ + +I A + Y ++ VEI+P++G ++ + VV E+ Sbjct: 1 MLEHERGITAEYLIEKIKAAIVIAVKKNYEVEDDNVLVEIDPDSGKFNVALVQNVVADED 60 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + +I + A+ S ++G V PL DFGR+A Q+AK VI Q +REAER +Q Sbjct: 61 WYDEHAEIGITEAQKIRKSYEVGDRVVTPLKTKDFGRIAAQTAKHVIRQGIREAERSQQL 120 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRENLRPGDRVKSYIYD 188 E + + +II TV RV+ IV DLG + ++ R+E + E G ++ Y+ D Sbjct: 121 SEIQSRAHDIIQATVTRVDNEKGIVALDLGKGGEAILPRNEQVPGETYTEGQTLQVYVVD 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +RG +V++SRTHP + +LF +EVPEIY+G V+VKA+SR+ G+R K+AV+S D+++ Sbjct: 181 VVSGERGARVMISRTHPGLVKRLFELEVPEIYDGTVEVKAISREAGARTKMAVWSKDANV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGR 307 +PV AC+G G RV AVV +L EKIDIV WS D + F+ AL PA V KV L + Sbjct: 241 NPVSACIGPHGDRVAAVVEKLGGEKIDIVKWSEDVSEFISAALSPAKVLKVELLPGETRS 300 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 V VP +QLSLAIG +GQN RL ++LTG+ IDI E ++ + Sbjct: 301 CRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEDEEPKAAEPKTE 355 >gi|256832250|ref|YP_003160977.1| NusA antitermination factor [Jonesia denitrificans DSM 20603] gi|256685781|gb|ACV08674.1| NusA antitermination factor [Jonesia denitrificans DSM 20603] Length = 354 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 134/345 (38%), Positives = 206/345 (59%), Gaps = 10/345 (2%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I DV+L + ++ A + ++ RVEI+ +TG + ++ Sbjct: 5 MAALRMLEREREISLDVLLEAIEQALALAYQRTPDSLRHARVEIDRKTGQVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EE+E ++ + A P ++G P DFG VA +A+QVI Q++R+ E D+ Sbjct: 61 EEIEREPARVDDEGA-YVPPVRELGD--EFDHTPKDFGHVATATARQVIFQRMRDVEDDQ 117 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIY 187 +FKDK G ++SG +++ V VDLGN + V+ E + E+ R G RV++Y+ Sbjct: 118 VLGQFKDKEGHVVSGIIQQAAHPRAVNVDLGNGVEAVLPEHEQVPGEDYRHGARVRAYVV 177 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V R+ +GP + LSRTHP + +LF MEVPE+ +G V++ A++R+ G R K+AV S+ Sbjct: 178 EVARKAKGPSITLSRTHPNLVRRLFEMEVPEVADGAVEIIALAREAGHRTKMAVTSTIPG 237 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++P GAC+G G RV+AV+ EL EKIDIV ++ D A F+ +AL PA V+ V + DE Sbjct: 238 LNPKGACIGPMGQRVRAVMAELGGEKIDIVDYTEDPAQFIASALSPATVSSVSILDERAR 297 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ +D Sbjct: 298 MARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIRSDADDQGAE 342 >gi|257468347|ref|ZP_05632441.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] gi|317062620|ref|ZP_07927105.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] gi|313688296|gb|EFS25131.1| transcription elongation factor NusA [Fusobacterium ulcerans ATCC 49185] Length = 361 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 136/353 (38%), Positives = 214/353 (60%), Gaps = 3/353 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S + L+ D + EK I ++ +L + ++ A + +G ++ VEIN ETGD+ Sbjct: 1 MKSKDAKVFLEALDELEREKGISKENLLLTVEQALLAAYKKNHGEEENVEVEINRETGDV 60 Query: 61 SLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 L+ + VVE ++ + +ISL A++ + +G +V + +F R A+Q+ KQ++ Sbjct: 61 KLYEVKTVVETEDLYDAAIEISLDDAQEIKKRVKVGDIVRIEINCEEFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER Y FK K +II+G ++R E N+ V+ + ++ E + R Sbjct: 121 IQKVREAERQYIYDRFKGKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K ++ +V + + P++++SR H + KLF +E+PEI +G++++KAV+R+ GSRA Sbjct: 181 VGERLKVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S+D +ID VGAC+G +G R++ +V EL EKIDIV+W FV L PA V Sbjct: 241 KVAVYSADPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVK 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI TE + Sbjct: 301 SVEVIEDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKED 353 >gi|157151698|ref|YP_001449859.1| transcription elongation factor NusA [Streptococcus gordonii str. Challis substr. CH1] gi|157076492|gb|ABV11175.1| transcription termination factor NusA [Streptococcus gordonii str. Challis substr. CH1] Length = 413 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 126/410 (30%), Positives = 219/410 (53%), Gaps = 15/410 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L + +K I ++ ++ + +S++ A R YG ++ + + GD ++ + E Sbjct: 4 EMLDAFRILEEDKGIKKEDIIDAVKESLRSAYRRRYGQADSALIDFDEKKGDFHVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P++FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPVEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 TITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEIFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFNAEDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEA 363 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 + + + ++ + ++ A E + + D Sbjct: 364 ANELGGFGEVAEEVVYEDDANLTYTDQAMEEMAAAALATDLEESEVTELD 413 >gi|326791500|ref|YP_004309321.1| NusA antitermination factor [Clostridium lentocellum DSM 5427] gi|326542264|gb|ADZ84123.1| NusA antitermination factor [Clostridium lentocellum DSM 5427] Length = 376 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 206/364 (56%), Gaps = 28/364 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDIS 61 E + D +A K I+++ ++ + SI+ A + +G +I++ I+ +TGD+ Sbjct: 2 NQEFIMAIDQIAKSKGINKEKLIDAIKQSIEVACKKHFGISTNGKQNIKINIDEKTGDVK 61 Query: 62 LFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 +F VV EEV N ++ + A++ + + + ++ + P +FGR+A Q+AKQV+I Sbjct: 62 VFAAKTVVPDEEVTNELLEVGITEAQNLNRLVQLDDIIDIEITPRNFGRIAAQNAKQVVI 121 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 QK++EAER Y E+ K+ +I+ G V R E IV L ++ + E + +N Sbjct: 122 QKIKEAERQMVYEEYSVKLNDIVKGKVLRREKNGYIVQLDFTEASLPSTEAMPNDNFDEQ 181 Query: 180 DRVK--------SYIYDVRREQRGP------------QVLLSRTHPQFMVKLFHMEVPEI 219 + Y+ +V+ + QV++SRTHP+ + +LF EV EI Sbjct: 182 MEMNDGIGTYKAFYLLNVKDFNKNENKLDGKSKNAGAQVIVSRTHPELVKRLFEQEVVEI 241 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 +G V +K+++R+ GSR K+AV+S+D +DPVGACVG +G R+ +V EL EKID+V W Sbjct: 242 KDGTVVIKSIAREAGSRTKIAVYSNDPLVDPVGACVGEKGKRINNIVQELNGEKIDVVHW 301 Query: 280 SPDSATFVINALRPAIVTKVVLDED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 S D F+ AL PA V V L+E +VIVP L+LAIG+ GQNVRLA++L G+ Sbjct: 302 SEDPKEFIREALSPAKVIDVELEETEGERNAKVIVPSHILTLAIGKGGQNVRLAAKLCGF 361 Query: 338 TIDI 341 IDI Sbjct: 362 KIDI 365 >gi|331265777|ref|YP_004325407.1| transcription termination-antitermination factor [Streptococcus oralis Uo5] gi|326682449|emb|CBZ00066.1| transcription termination-antitermination factor [Streptococcus oralis Uo5] Length = 374 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 211/365 (57%), Gaps = 15/365 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEEA 360 Query: 354 DFNER 358 + Sbjct: 361 GQVDY 365 >gi|317051740|ref|YP_004112856.1| transcription termination factor NusA [Desulfurispirillum indicum S5] gi|316946824|gb|ADU66300.1| transcription termination factor NusA [Desulfurispirillum indicum S5] Length = 382 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 144/378 (38%), Positives = 226/378 (59%), Gaps = 3/378 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + E + + + EK++D+ +L + ++ A + Y +I I+ ETG + Sbjct: 2 KNEFISSIEQLCREKNLDKTTLLEAIETAVVAALKRKYSQECEIFFRIDDETGVFDVSFE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EVVE+V + + +ISL A +G + P+ R+ Q+AKQ+I+Q+VR+ Sbjct: 62 KEVVEKVRDKSLEISLTDAIKIQEDAKVGQRIHVPIDIQTIARITAQTAKQIIMQRVRDV 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ E+++++GE+I V+RVE V++ +G DGV+ + + + + + GD VK+ Sbjct: 122 EKASLMDEYRERIGELILAPVERVEARRVVLSMGECDGVLLQSDILPTDTYKQGDVVKAV 181 Query: 186 IYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I DV+ +R Q+LLSRT QF+++LF EVPEI + V +KAV+R+ GSR+K+AV + Sbjct: 182 IRDVQLSRRGDVQILLSRTSEQFLLQLFREEVPEISSSNVVIKAVAREGGSRSKIAVKAL 241 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S +DPVGACVG++GSRV AVV E+ EKIDI+ WS + A F+ NAL PA V K+ + ++ Sbjct: 242 KSGMDPVGACVGVKGSRVSAVVEEIGGEKIDIIEWSDEPALFICNALNPAEVVKMDIYDE 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN--RQKDFNERTQFF 362 G V+VP+ QLSLAIGR+GQN RLA++LT W IDI +EEE + R+ Sbjct: 302 EGVAVVVVPERQLSLAIGRKGQNARLAAKLTNWKIDIYSEEEYEAYLRGETPQARRSSDP 361 Query: 363 MQAINVDEIIAHLLVAEG 380 Q++ + + L E Sbjct: 362 TQSVQIQPVANSSLAEEQ 379 >gi|149002224|ref|ZP_01827166.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS69] gi|168485664|ref|ZP_02710172.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1087-00] gi|147759539|gb|EDK66530.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS69] gi|183571232|gb|EDT91760.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1087-00] Length = 378 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363 >gi|332366408|gb|EGJ44159.1| N utilization substance protein A [Streptococcus sanguinis SK355] Length = 417 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 134/413 (32%), Positives = 224/413 (54%), Gaps = 17/413 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSVAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNEEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + I D + + D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADADVLETEFSA--TDFDAAAEETVLETAGLESEAEEL 416 >gi|307702469|ref|ZP_07639424.1| transcription elongation protein nusA [Streptococcus oralis ATCC 35037] gi|307623963|gb|EFO02945.1| transcription elongation protein nusA [Streptococcus oralis ATCC 35037] Length = 374 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 211/365 (57%), Gaps = 15/365 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMIPVEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEEA 360 Query: 354 DFNER 358 + Sbjct: 361 GQVDY 365 >gi|325695172|gb|EGD37073.1| N utilization substance protein A [Streptococcus sanguinis SK150] Length = 420 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAAAEETVVETAGLESEAEEL 419 >gi|15900465|ref|NP_345069.1| transcription elongation factor NusA [Streptococcus pneumoniae TIGR4] gi|111657275|ref|ZP_01408041.1| hypothetical protein SpneT_02001513 [Streptococcus pneumoniae TIGR4] gi|148983931|ref|ZP_01817250.1| transcription elongation factor NusA [Streptococcus pneumoniae SP3-BS71] gi|148990071|ref|ZP_01821325.1| transcription elongation factor NusA [Streptococcus pneumoniae SP6-BS73] gi|148992337|ref|ZP_01822060.1| transcription elongation factor NusA [Streptococcus pneumoniae SP9-BS68] gi|148998226|ref|ZP_01825695.1| transcription elongation factor NusA [Streptococcus pneumoniae SP11-BS70] gi|149005663|ref|ZP_01829402.1| transcription elongation factor NusA [Streptococcus pneumoniae SP18-BS74] gi|149012573|ref|ZP_01833570.1| transcription elongation factor NusA [Streptococcus pneumoniae SP19-BS75] gi|149021508|ref|ZP_01835563.1| transcription elongation factor NusA [Streptococcus pneumoniae SP23-BS72] gi|168482793|ref|ZP_02707745.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1873-00] gi|168488244|ref|ZP_02712443.1| transcription termination factor NusA [Streptococcus pneumoniae SP195] gi|168490557|ref|ZP_02714700.1| transcription termination factor NusA [Streptococcus pneumoniae CDC0288-04] gi|168576545|ref|ZP_02722419.1| transcription termination factor NusA [Streptococcus pneumoniae MLV-016] gi|169834095|ref|YP_001694040.1| transcription elongation factor NusA [Streptococcus pneumoniae Hungary19A-6] gi|182683486|ref|YP_001835233.1| transcription elongation factor NusA [Streptococcus pneumoniae CGSP14] gi|221231386|ref|YP_002510538.1| N utilization substance protein A [Streptococcus pneumoniae ATCC 700669] gi|225854094|ref|YP_002735606.1| transcription elongation factor NusA [Streptococcus pneumoniae JJA] gi|225856263|ref|YP_002737774.1| transcription elongation factor NusA [Streptococcus pneumoniae P1031] gi|225858391|ref|YP_002739901.1| transcription elongation factor NusA [Streptococcus pneumoniae 70585] gi|225860558|ref|YP_002742067.1| transcription elongation factor NusA [Streptococcus pneumoniae Taiwan19F-14] gi|237650175|ref|ZP_04524427.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI 1974] gi|237821775|ref|ZP_04597620.1| transcription elongation factor NusA [Streptococcus pneumoniae CCRI 1974M2] gi|298230907|ref|ZP_06964588.1| transcription elongation factor NusA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255627|ref|ZP_06979213.1| transcription elongation factor NusA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502347|ref|YP_003724287.1| transcription elongation factor NusA [Streptococcus pneumoniae TCH8431/19A] gi|303255252|ref|ZP_07341325.1| transcription elongation factor NusA [Streptococcus pneumoniae BS455] gi|303260042|ref|ZP_07346015.1| transcription elongation factor NusA [Streptococcus pneumoniae SP-BS293] gi|303261226|ref|ZP_07347174.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS292] gi|303263891|ref|ZP_07349812.1| transcription elongation factor NusA [Streptococcus pneumoniae BS397] gi|303267073|ref|ZP_07352944.1| transcription elongation factor NusA [Streptococcus pneumoniae BS457] gi|303269288|ref|ZP_07355062.1| transcription elongation factor NusA [Streptococcus pneumoniae BS458] gi|307126756|ref|YP_003878787.1| transcription termination factor NusA [Streptococcus pneumoniae 670-6B] gi|14972027|gb|AAK74709.1| N utilization substance protein A [Streptococcus pneumoniae TIGR4] gi|147755869|gb|EDK62913.1| transcription elongation factor NusA [Streptococcus pneumoniae SP11-BS70] gi|147762603|gb|EDK69563.1| transcription elongation factor NusA [Streptococcus pneumoniae SP18-BS74] gi|147763378|gb|EDK70315.1| transcription elongation factor NusA [Streptococcus pneumoniae SP19-BS75] gi|147924078|gb|EDK75190.1| transcription elongation factor NusA [Streptococcus pneumoniae SP3-BS71] gi|147924597|gb|EDK75684.1| transcription elongation factor NusA [Streptococcus pneumoniae SP6-BS73] gi|147928963|gb|EDK79975.1| transcription elongation factor NusA [Streptococcus pneumoniae SP9-BS68] gi|147930204|gb|EDK81189.1| transcription elongation factor NusA [Streptococcus pneumoniae SP23-BS72] gi|168996597|gb|ACA37209.1| transcription termination factor NusA [Streptococcus pneumoniae Hungary19A-6] gi|172043571|gb|EDT51617.1| transcription termination factor NusA [Streptococcus pneumoniae CDC1873-00] gi|182628820|gb|ACB89768.1| transcription elongation factor NusA [Streptococcus pneumoniae CGSP14] gi|183573000|gb|EDT93528.1| transcription termination factor NusA [Streptococcus pneumoniae SP195] gi|183574829|gb|EDT95357.1| transcription termination factor NusA [Streptococcus pneumoniae CDC0288-04] gi|183577711|gb|EDT98239.1| transcription termination factor NusA [Streptococcus pneumoniae MLV-016] gi|220673846|emb|CAR68349.1| putative putative N utilization substance protein A [Streptococcus pneumoniae ATCC 700669] gi|225720770|gb|ACO16624.1| transcription termination factor NusA [Streptococcus pneumoniae 70585] gi|225723031|gb|ACO18884.1| transcription termination factor NusA [Streptococcus pneumoniae JJA] gi|225725477|gb|ACO21329.1| transcription termination factor NusA [Streptococcus pneumoniae P1031] gi|225727542|gb|ACO23393.1| transcription termination factor NusA [Streptococcus pneumoniae Taiwan19F-14] gi|298237942|gb|ADI69073.1| transcription elongation factor NusA [Streptococcus pneumoniae TCH8431/19A] gi|301793757|emb|CBW36144.1| putative putative N utilization substance protein A [Streptococcus pneumoniae INV104] gi|301799610|emb|CBW32165.1| putative putative N utilization substance protein A [Streptococcus pneumoniae OXC141] gi|301801434|emb|CBW34121.1| putative putative N utilization substance protein A [Streptococcus pneumoniae INV200] gi|302597793|gb|EFL64866.1| transcription elongation factor NusA [Streptococcus pneumoniae BS455] gi|302637360|gb|EFL67847.1| transcription elongation factor NusA [Streptococcus pneumoniae SP14-BS292] gi|302638737|gb|EFL69199.1| transcription elongation factor NusA [Streptococcus pneumoniae SP-BS293] gi|302641185|gb|EFL71558.1| transcription elongation factor NusA [Streptococcus pneumoniae BS458] gi|302643401|gb|EFL73677.1| transcription elongation factor NusA [Streptococcus pneumoniae BS457] gi|302646296|gb|EFL76522.1| transcription elongation factor NusA [Streptococcus pneumoniae BS397] gi|306483818|gb|ADM90687.1| transcription termination factor NusA [Streptococcus pneumoniae 670-6B] gi|327390293|gb|EGE88634.1| transcription termination factor NusA [Streptococcus pneumoniae GA04375] gi|332074367|gb|EGI84843.1| transcription termination factor NusA [Streptococcus pneumoniae GA17570] gi|332076389|gb|EGI86852.1| transcription termination factor NusA [Streptococcus pneumoniae GA41301] gi|332202437|gb|EGJ16506.1| transcription termination factor NusA [Streptococcus pneumoniae GA41317] gi|332204573|gb|EGJ18638.1| transcription termination factor NusA [Streptococcus pneumoniae GA47901] Length = 378 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363 >gi|332362937|gb|EGJ40726.1| N utilization substance protein A [Streptococcus sanguinis SK49] Length = 420 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADADVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419 >gi|332670044|ref|YP_004453052.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484] gi|332339082|gb|AEE45665.1| transcription termination factor NusA [Cellulomonas fimi ATCC 484] Length = 350 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 204/352 (57%), Gaps = 27/352 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q + E+ I DV+++ + ++ A G+ RVE++ +G ++++ Sbjct: 5 MQALRLLEREREISLDVLVAAIEQALLSAYHRTPGSHQRARVEVDRRSGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-----PMDFGRVAVQSAKQVIIQKVRE 124 AR+ P + G V +P P FGR+A +A+QVI+Q++R+ Sbjct: 59 --------------AREPAPVGEDGRPVEVDMPEFDDTPDGFGRIATATARQVIVQRLRD 104 Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 AE D+ F+ K GE++ G +++ + V+VD+G ++ V+ + E + E G+R++ Sbjct: 105 AEDDQVLGTFRGKEGEVLGGVIQQGRDPRTVLVDVGGTEAVLPQHEQVPGEEYVHGERLR 164 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ +V R RGPQV LSRTHP + +LF +EVPE+ +G V++ A++R+ G R K+AV + Sbjct: 165 AYVLEVARGPRGPQVTLSRTHPNLVRRLFALEVPEVADGTVEITAMAREAGHRTKMAVRA 224 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LD 302 + + ++ GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA V V +D Sbjct: 225 TVAGVNAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVVSVTVVD 284 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + D Sbjct: 285 PDARAARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAETGAADESD 336 >gi|327467113|gb|EGF12623.1| N utilization substance protein A [Streptococcus sanguinis SK330] Length = 420 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + +A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILGDAAVLETEVSAAEATDFDAVAEETVLETAGLESEAEEL 419 >gi|94542552|gb|ABF32601.1| N utilization substance protein A [Streptococcus pyogenes MGAS9429] gi|94546443|gb|ABF36490.1| N utilization substance protein A [Streptococcus pyogenes MGAS2096] Length = 396 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D + Sbjct: 10 NIMSKEMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQV 69 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 F + EVVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+ Sbjct: 70 FTVREVVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKM 129 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 R R+ + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Sbjct: 130 RRQMREVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRI 189 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 Y+Y V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV Sbjct: 190 DVYVYKVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVR 249 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVI 288 S + ++D +G VG GS ++ V+++ E ID++ W D A F+ Sbjct: 250 SHNPNVDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIY 309 Query: 289 NALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NA+ PA V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 310 NAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEY 369 Query: 348 SINRQKD 354 + Sbjct: 370 DRLEAEK 376 >gi|322386001|ref|ZP_08059641.1| transcription elongation factor NusA [Streptococcus cristatus ATCC 51100] gi|321269984|gb|EFX52904.1| transcription elongation factor NusA [Streptococcus cristatus ATCC 51100] Length = 413 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 134/406 (33%), Positives = 220/406 (54%), Gaps = 16/406 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFHVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A ++ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPTEENIDVIEWVSDPAEYIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFHAEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEFEAMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 + VD A AE D E +++ E ++ Sbjct: 366 ANELGGFGQDYVPTEVDAPSAE-FEAEELNDTEVATEIELEESEAV 410 >gi|19746626|ref|NP_607762.1| transcription elongation factor NusA [Streptococcus pyogenes MGAS8232] gi|139473254|ref|YP_001127969.1| transcription elongation factor NusA [Streptococcus pyogenes str. Manfredo] gi|161761305|ref|YP_060778.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10394] gi|162139101|ref|YP_599142.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10270] gi|162139179|ref|YP_603019.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS10750] gi|162139397|ref|YP_280920.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS6180] gi|306826865|ref|ZP_07460165.1| transcription termination factor NusA [Streptococcus pyogenes ATCC 10782] gi|19748845|gb|AAL98261.1| transcription termination-antitermination factor [Streptococcus pyogenes MGAS8232] gi|134271500|emb|CAM29721.1| putative N utilization substance protein A [Streptococcus pyogenes str. Manfredo] gi|304430883|gb|EFM33892.1| transcription termination factor NusA [Streptococcus pyogenes ATCC 10782] Length = 385 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEA 363 Query: 353 KD 354 + Sbjct: 364 EK 365 >gi|332358012|gb|EGJ35845.1| N utilization substance protein A [Streptococcus sanguinis SK1056] Length = 420 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 134/417 (32%), Positives = 225/417 (53%), Gaps = 18/417 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + + I D + V+ + + V + I G + E A E+ Sbjct: 366 ANELGGFAQEAEEILGDAAVLETEVSAA--EATDFDAVAEETVLEIAGLESE-AEEL 419 >gi|257055490|ref|YP_003133322.1| transcription elongation factor NusA [Saccharomonospora viridis DSM 43017] gi|256585362|gb|ACU96495.1| transcription termination factor NusA [Saccharomonospora viridis DSM 43017] Length = 348 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 27/366 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + VL + ++ A + G R++I+ +TG + + Sbjct: 5 IAALRAIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +A D + ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 58 -------------IAYTLDENGEVVEEWDD--TPEGFGRIAAATARQVILQRLRDAEHEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 Y EF + GEI++G V+R N VIV +G+++GV+ E + E G R+K+Y Sbjct: 103 TYGEFSAQEGEIVAGVVQRDAKANARGMVIVQVGDTEGVLPPAEQVPGEVYEHGARLKAY 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 163 VVGVSRTARGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 ++ GAC+G G+RV+ V++EL EKIDI+ S D A FV NAL PA V V +DE Sbjct: 223 PGVNAKGACIGHVGARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDER 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Q+ + + Sbjct: 283 TKTARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPEPGEQQHMDPAEKRHPA 342 Query: 365 AINVDE 370 A + Sbjct: 343 ATGSAD 348 >gi|325686965|gb|EGD28989.1| N utilization substance protein A [Streptococcus sanguinis SK72] Length = 420 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 134/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALTISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + +A + E +E EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSGAEATDFDAVAEETVLETVGLEREAEEL 419 >gi|195977581|ref|YP_002122825.1| transcription elongation factor NusA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869110|ref|YP_002745058.1| N utilization substance protein A [Streptococcus equi subsp. zooepidemicus] gi|225869938|ref|YP_002745885.1| N utilization substance protein A [Streptococcus equi subsp. equi 4047] gi|195974286|gb|ACG61812.1| transcription termination protein NusA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699342|emb|CAW92741.1| putative N utilization substance protein A [Streptococcus equi subsp. equi 4047] gi|225702386|emb|CAX00230.1| putative N utilization substance protein A [Streptococcus equi subsp. zooepidemicus] Length = 384 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 209/380 (55%), Gaps = 15/380 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIEAVTESLKSAYKRRYGQAESCVIEFNDKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISL A + ++G + +FGRVA QSAKQ I++++R R Sbjct: 64 VVEEVFDSRLEISLNDALAISSAYELGDKIRFEESVSEFGRVAAQSAKQTIMERMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EITFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRYDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYERLEA 363 Query: 353 KDFNERTQFFMQAINVDEII 372 + T+ + Sbjct: 364 EKEAAMTEAVATEELLTNEE 383 >gi|116514302|ref|YP_813208.1| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093617|gb|ABJ58770.1| Transcription elongation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 406 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 137/361 (37%), Positives = 217/361 (60%), Gaps = 3/361 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304 +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 304 KRKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363 Query: 365 A 365 Sbjct: 364 Q 364 >gi|87309244|ref|ZP_01091380.1| transcription elongation factor NusA [Blastopirellula marina DSM 3645] gi|87287883|gb|EAQ79781.1| transcription elongation factor NusA [Blastopirellula marina DSM 3645] Length = 425 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 158/427 (37%), Positives = 249/427 (58%), Gaps = 37/427 (8%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N E+L+I DA+ +K+ID++VV + ++ A R + S++ + I+ E G IS Sbjct: 1 MNPTEVLRIVDAIHRDKNIDKEVVFQAIESALVSATRKYHSEESEVVIHIDREDGSIS-- 58 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKV 122 G + +P+ P + GR+ Q+AKQVIIQK+ Sbjct: 59 ------------------------------GHIDGEPVDPEEAVGRIGAQTAKQVIIQKI 88 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 REAERD + E+ + VG++++GTV R E G IV LGN + ++ R E I E+ DRV Sbjct: 89 REAERDSLHDEYDEMVGQMVNGTVHRAEGGAAIVALGNVEAILPRSEQIPGESFHANDRV 148 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + +VR++ +V+LSR + +F+ +LF E+PEI + ++++K +SR+PG R+K+AV Sbjct: 149 RAIVLEVRKQGSRVKVVLSRANKRFVQRLFEQEIPEITDEVIEIKNISREPGYRSKVAVD 208 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 SSD +D VGACVG+RG+R++ +V EL E+IDIV W+ D T + NAL+PA V +V+L Sbjct: 209 SSDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWTDDPETLIPNALQPAEVEEVILC 268 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+ EE ++ F Sbjct: 269 KMMGRAIVLVREDQLSLAIGRRGQNVRLASKLCGWDIEIMLREELEEQIERAVTA----F 324 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 V + +A LV EGF ++L+ ++ + ++ F EE I+ A + Sbjct: 325 TGIDGVTDSVAEQLVGEGFLSYDDLSVIESDALMAMGEFTEEEIERIRDEAENRGMEAER 384 Query: 423 TLQKKIR 429 L+ + R Sbjct: 385 ALETERR 391 >gi|323350354|ref|ZP_08086018.1| transcription elongation factor NusA [Streptococcus sanguinis VMC66] gi|322123427|gb|EFX95103.1| transcription elongation factor NusA [Streptococcus sanguinis VMC66] Length = 420 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 134/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I + + V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILAEAAVLETEVSAAEATDFDAAAEETVLETAGLESEVEEL 419 >gi|325697660|gb|EGD39545.1| N utilization substance protein A [Streptococcus sanguinis SK160] gi|327490545|gb|EGF22326.1| N utilization substance protein A [Streptococcus sanguinis SK1058] Length = 420 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 225/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVD-EIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + I D ++ + A D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADAAVLGTEVSAAEATDFDAAAEETVLETAGLESEAEEL 419 >gi|183220911|ref|YP_001838907.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911007|ref|YP_001962562.1| transcription elongation factor NusA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775683|gb|ABZ93984.1| Transcription elongation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779333|gb|ABZ97631.1| N utilization substance protein A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 466 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 158/517 (30%), Positives = 246/517 (47%), Gaps = 74/517 (14%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD----IRVEINPETG-DISLF 63 L + +KS+DR++VL V+ DS+ A R G ++ +VE + +I + Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L +VV E ++SL+ A+ DP I++G + P D RV AKQ++ Q++R Sbjct: 72 VLRDVVAEKTINPLEVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRLR 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + E++ Y E+K K GE+ G +R + + +DLG +G++ + + E R GDR+K Sbjct: 132 DMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGKVEGIMLKKDQNPGEKYRQGDRLK 191 Query: 184 SYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + I V R P + LSR F+ KLF ME+PE+Y+GIV+++ V+R P R K+ V Sbjct: 192 AIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKVVV 251 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S S +DPVGACVGM+G R+QA+V EL +E+IDIV+ S + + F+ NA+ PA +V + Sbjct: 252 TTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEVHV 311 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 D G VIVP E LSLAIG G NV+L SQL+G+ IDI T + + Sbjct: 312 DRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTVSQYNQELASPEAR---- 367 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 E + +E +E + Sbjct: 368 ------------------------------------------EKLDRLFNAQQEAMEESE 385 Query: 422 ITLQKKIRELGVSEE----LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + ++ + L IPG+ +I L GIK +E L S ++L S Sbjct: 386 DGYNQSGQDEEEEDSGFTPLSEIPGLTPRIVGLLEAGGIKNVETLLEFSQEELSKIS--- 442 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G K E ++ R + W+E+ Sbjct: 443 --------------GIGKTTAEQILRLLRESIEWVEE 465 >gi|332364628|gb|EGJ42397.1| N utilization substance protein A [Streptococcus sanguinis SK1059] Length = 420 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419 >gi|291298941|ref|YP_003510219.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290568161|gb|ADD41126.1| NusA antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 347 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 132/344 (38%), Positives = 198/344 (57%), Gaps = 27/344 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L ++ +E+ I ++ + ++ A R S RVE+N ETG +++ Sbjct: 5 LVALRSLEHERDIPFHTIIDAIESALLTAYRHTPDAQSHARVEVNRETGTVTV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ V P DFGR+A +AKQVI+Q++REA D Sbjct: 58 -------------RAREVDAEGNV--VREWDDTPDDFGRIAAMTAKQVIMQRLREATDDV 102 Query: 130 QYLEFKDKVGEIISGTVKRVE----YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + EF G++++G ++ E G V+VDLG + ++ E + EN G R+++ Sbjct: 103 NFGEFASLEGDVVTGVIQAHEGASEKGTVMVDLGKIEAMLPHVEQVPGENYSHGRRLRAA 162 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V R RGPQ+ +SR+HP + KLF EVPEI +G+V++ AV+R+ G R K+AV ++ Sbjct: 163 VVQVSRGPRGPQITVSRSHPNLVKKLFAAEVPEIADGLVEIAAVAREAGHRTKIAVRATV 222 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 + ++ GAC+G GSRV+AV++EL EKIDI+ +S D ATFV NAL P+ V V + D D Sbjct: 223 ADLNAKGACIGPMGSRVRAVMSELDGEKIDIIDYSEDPATFVGNALSPSKVVSVEVLDPD 282 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIGR GQN RLA++LTGW IDI ++ Sbjct: 283 DKVARVVVPDFQLSLAIGREGQNARLAARLTGWRIDIKSDAAPD 326 >gi|162139854|ref|YP_619194.2| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 406 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 137/361 (37%), Positives = 217/361 (60%), Gaps = 3/361 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDP 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--D 304 +IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363 Query: 365 A 365 Sbjct: 364 Q 364 >gi|327459330|gb|EGF05676.1| N utilization substance protein A [Streptococcus sanguinis SK1] Length = 420 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILGDAAVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419 >gi|307709807|ref|ZP_07646258.1| transcription elongation protein nusA [Streptococcus mitis SK564] gi|307619509|gb|EFN98634.1| transcription elongation protein nusA [Streptococcus mitis SK564] Length = 374 Score = 294 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 210/359 (58%), Gaps = 15/359 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 359 >gi|194398628|ref|YP_002037214.1| transcription elongation factor NusA [Streptococcus pneumoniae G54] gi|194358295|gb|ACF56743.1| transcription termination factor NusA [Streptococcus pneumoniae G54] Length = 378 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDENDSKRALVVVPXNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363 >gi|324991725|gb|EGC23657.1| N utilization substance protein A [Streptococcus sanguinis SK353] Length = 420 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 134/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + ++LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYINLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGLESEAEEL 419 >gi|330718231|ref|ZP_08312831.1| transcription elongation factor NusA [Leuconostoc fallax KCTC 3537] Length = 375 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 139/371 (37%), Positives = 219/371 (59%), Gaps = 5/371 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT-MSDIRVEINPETGDISLFRLL 66 EL+ DA+ E+ IDR +V+ + ++ A + + S++ V N G I++ ++ Sbjct: 4 ELVDALDALENERGIDRQIVVDALELALAAAYKKQFNATQSNVDVTFNDRNGSITIKQIK 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 VV E+ E+ +I L A + + + G + + P +FGR+A Q+AKQVI+QK+RE Sbjct: 64 TVVLDEDFEDEVIEIPLSEALAINRAYEAGDEIRFDVTPKNFGRIAAQTAKQVIMQKLRE 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVK 183 A R+ Y +F + EII+G V+R + + V L GN + V+ +++ + E+ R DR+K Sbjct: 124 AGREAIYKKFSEYQDEIITGEVERQDARFLYVMLPGNQEAVMAQNDQMPNEHYRMHDRIK 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V +GPQ+ +SR + +LF EVPE+Y+G V++ +++R+ G R+K+AV++ Sbjct: 184 VLVSKVENSPKGPQIFVSRAAEDLVKRLFEQEVPEVYDGTVEIMSIAREAGDRSKIAVYT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 DS +DPVGA VG RG+RVQAVV EL E +DIV W D A ++ NAL P+ V V+ D Sbjct: 244 HDSDLDPVGALVGQRGTRVQAVVNELGGENMDIVEWVEDEAQYIANALNPSEVVDVIFDP 303 Query: 304 DVGRI-EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + VIVP QLSLAIG++GQN RLA++LTG+ IDI +E E + K Sbjct: 304 ENNHAVTVIVPDNQLSLAIGKKGQNARLAARLTGFKIDIKSESEAADFLAKVAEREDTSQ 363 Query: 363 MQAINVDEIIA 373 + N + + Sbjct: 364 PEEKNQNSDMD 374 >gi|125718693|ref|YP_001035826.1| transcription elongation factor NusA [Streptococcus sanguinis SK36] gi|125498610|gb|ABN45276.1| N utilization substance protein A, putative [Streptococcus sanguinis SK36] Length = 420 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D I V+ D + A + E A +E EE Sbjct: 366 ANELGGFAQEAEEILADAAILETEVSGAEATDFDAAAEETVLETAGLESEAEEL 419 >gi|328944976|gb|EGG39133.1| N utilization substance protein A [Streptococcus sanguinis SK1087] Length = 420 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 224/414 (54%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDSKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A I E A +E EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETILETAGLESEAEEL 419 >gi|315222140|ref|ZP_07864049.1| transcription termination factor NusA [Streptococcus anginosus F0211] gi|315188766|gb|EFU22472.1| transcription termination factor NusA [Streptococcus anginosus F0211] Length = 397 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 128/383 (33%), Positives = 209/383 (54%), Gaps = 15/383 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPTEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 AITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPAKYDAKSGRMIPVEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ D ED V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDSEDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNERTQFFMQAINVDEIIAHL 375 E Sbjct: 364 AGELGGFAEEADEFATIESPVET 386 >gi|146319503|ref|YP_001199215.1| transcription elongation factor NusA [Streptococcus suis 05ZYH33] gi|146321698|ref|YP_001201409.1| transcription elongation factor NusA [Streptococcus suis 98HAH33] gi|223934079|ref|ZP_03626028.1| NusA antitermination factor [Streptococcus suis 89/1591] gi|253752514|ref|YP_003025655.1| N utilization substance protein A [Streptococcus suis SC84] gi|253754340|ref|YP_003027481.1| N utilization substance protein A [Streptococcus suis P1/7] gi|253756274|ref|YP_003029414.1| N utilization substance protein A [Streptococcus suis BM407] gi|302024448|ref|ZP_07249659.1| transcription elongation factor NusA [Streptococcus suis 05HAS68] gi|145690309|gb|ABP90815.1| Transcription elongation factor [Streptococcus suis 05ZYH33] gi|145692504|gb|ABP93009.1| Transcription elongation factor [Streptococcus suis 98HAH33] gi|223897249|gb|EEF63661.1| NusA antitermination factor [Streptococcus suis 89/1591] gi|251816803|emb|CAZ52446.1| putative N utilization substance protein A [Streptococcus suis SC84] gi|251818738|emb|CAZ56574.1| putative N utilization substance protein A [Streptococcus suis BM407] gi|251820586|emb|CAR47342.1| putative N utilization substance protein A [Streptococcus suis P1/7] gi|292559121|gb|ADE32122.1| transcription termination factor NusA [Streptococcus suis GZ1] gi|319758923|gb|ADV70865.1| transcription elongation factor NusA [Streptococcus suis JS14] Length = 380 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 206/363 (56%), Gaps = 15/363 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + + I++ ++ + +S++ A + YG +E + + GD +F + E Sbjct: 4 EMLEAFRILEEDMGINKADIIDAVTESLRSAYKRRYGQSESAVIEFDEKKGDFHVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ +R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQKR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y+Y Sbjct: 124 AITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ E ID++ W D A F+ NAL P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNALAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEYEAFEA 363 Query: 353 KDF 355 + Sbjct: 364 TQY 366 >gi|21224053|ref|NP_629832.1| transcription elongation factor NusA [Streptomyces coelicolor A3(2)] gi|7801276|emb|CAB91140.1| putative transcriptional termination/antitermination factor [Streptomyces coelicolor A3(2)] Length = 340 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 132/340 (38%), Positives = 195/340 (57%), Gaps = 21/340 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPDDLEEGQAAREFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325 >gi|229820977|ref|YP_002882503.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333] gi|229566890|gb|ACQ80741.1| NusA antitermination factor [Beutenbergia cavernae DSM 12333] Length = 346 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 126/343 (36%), Positives = 197/343 (57%), Gaps = 22/343 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ E+ I DV++ + ++ A G + RV ++ ++G +++ EVV Sbjct: 5 MSALRALEREREISLDVLVGAIEQALLSAYERTPGAYPEARVHLDRQSGHVTVLAT-EVV 63 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E + + P FGR+A +A+QVIIQ++R+AE D+ Sbjct: 64 GEGDEEVRR-------------------EFDHTPEGFGRIATSTARQVIIQRLRDAEDDQ 104 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 F+ + GE+I+G V++ V+VD+G + V+ E + E+ G+R+++Y+ D Sbjct: 105 VLGTFRGREGELIAGVVQQGGRVGAVLVDVGGVEAVLPPHEQVPGESYPHGERIRAYVLD 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP + LSRTHP F+ ++F +EVPE+ +G V++ A++R+ G R K+AV S + Sbjct: 165 VSRGLKGPSITLSRTHPNFVRRMFALEVPEVADGSVEIAALAREAGHRTKMAVRSLVPGV 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 GAC+G G RV+AV+ ELR EKIDIV +S D A FV AL PA V+ V + D + Sbjct: 225 GAKGACIGPMGQRVRAVMAELRGEKIDIVDFSEDPARFVAAALSPARVSSVQIVDAEARS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 VIVP QLSLAIG+ GQN RLA++LTGW IDI + + + + Sbjct: 285 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTQPADD 327 >gi|307705617|ref|ZP_07642469.1| transcription elongation protein nusA [Streptococcus mitis SK597] gi|307620894|gb|EFN99978.1| transcription elongation protein nusA [Streptococcus mitis SK597] Length = 374 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 210/359 (58%), Gaps = 15/359 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 359 >gi|303235674|ref|ZP_07322281.1| transcription termination factor NusA [Prevotella disiens FB035-09AN] gi|302484121|gb|EFL47109.1| transcription termination factor NusA [Prevotella disiens FB035-09AN] Length = 409 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 141/414 (34%), Positives = 237/414 (57%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ + KSIDR ++SV+ +S + +YG+ + V +NP+ GD ++R V Sbjct: 1 MIETFNEFKETKSIDRTTLVSVLEESFRNVIAKIYGSDENFDVIVNPDKGDFEIYRNRVV 60 Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + V++ +ISL A+ P ++G VS+P+ FGR A+ + +Q + KV E E Sbjct: 61 VADGEVQDENKEISLTDAQKIVPDYEVGEDVSEPVDFAKFGRRAILNLRQTLSSKVLELE 120 Query: 127 RDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG+IISG V + + ++VD N++ ++ + E I R+ R G+ +++ Sbjct: 121 HDSLYNKYKDRVGQIISGEVYQVWKREVLLVDEDNNELILPKGEQIPRDQYRKGETIRAV 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D Sbjct: 181 ILRVDNENNNPKIILSRTAPTFLERLLEAEVPEIEDGLISIKGIARMPGERAKIAVESYD 240 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ Sbjct: 241 DRIDPVGACVGVRGSRVHGIVRELCNENIDVINWTANTKLFIQRALSPAKVSSLTIDEEN 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LTG+TID+ E ++ + + + + Sbjct: 301 KKAEVFLQPEEVSLAIGRGGMNIKLASMLTGYTIDVFRELDEQTSEEDIYLDEFSD---- 356 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G ++ + +EET + R E Sbjct: 357 -EIDKWVIDAIKSIGLDTARQVLNAPREMLIEKADLEEETVDNVLNILRAEFES 409 >gi|183603429|ref|ZP_02716853.2| transcription termination factor NusA [Streptococcus pneumoniae CDC3059-06] gi|307067174|ref|YP_003876140.1| transcription elongation factor [Streptococcus pneumoniae AP200] gi|183576810|gb|EDT97338.1| transcription termination factor NusA [Streptococcus pneumoniae CDC3059-06] gi|306408711|gb|ADM84138.1| Transcription elongation factor [Streptococcus pneumoniae AP200] gi|332076985|gb|EGI87447.1| transcription termination factor NusA [Streptococcus pneumoniae GA17545] Length = 374 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 209/359 (58%), Gaps = 15/359 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 359 >gi|307710806|ref|ZP_07647234.1| transcription elongation protein nusA [Streptococcus mitis SK321] gi|307617412|gb|EFN96584.1| transcription elongation protein nusA [Streptococcus mitis SK321] Length = 374 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 210/359 (58%), Gaps = 15/359 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + EV Sbjct: 1 MLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 61 VDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 121 ITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++ Sbjct: 181 VEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGANIKKITSKFHPARYDAKSDRMVPIEENIDVIEWVADPAEFIYNAIAPA 300 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDQVIFDENDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 359 >gi|284036133|ref|YP_003386063.1| NusA antitermination factor [Spirosoma linguale DSM 74] gi|283815426|gb|ADB37264.1| NusA antitermination factor [Spirosoma linguale DSM 74] Length = 414 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 134/407 (32%), Positives = 232/407 (57%), Gaps = 9/407 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K+IDR +++++ D + R YGT + V IN E+GD+ ++R E+ Sbjct: 6 LIESFADFARSKNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREI 65 Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ +I L AR ++G V++ + DFGR VQ+A+Q +IQK+++ Sbjct: 66 VDDNSEDIWDYDKIPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKDM 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++ Y ++KD+VG++++ V ++ +I VD +++ + R E IS++ R G+ VK+ Sbjct: 126 EKELLYQKYKDQVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVKA 185 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I V P+++LSRT P F+ +LF +EVPEIY+G++ ++ + R+PG RAK+AV S Sbjct: 186 VISRVDMLNGTPKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVESY 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + + AL PA ++ + +D + Sbjct: 246 DDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDRE 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R+ V + +Q+SLAIG+ GQN++LA +L ID+ + E + E Sbjct: 306 TKRVSVFLKPDQVSLAIGKGGQNIKLAGRLVDMEIDVFRDNEGQEDD-----EDVDLMEF 360 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + +DE + L G + + + E+ +E+T EI Sbjct: 361 SDEIDEWMIQELRKVGLDTAKSVLALNKEELVRRTDLEEDTVEEILN 407 >gi|15675574|ref|NP_269748.1| transcription elongation factor NusA [Streptococcus pyogenes M1 GAS] gi|71911225|ref|YP_282775.1| transcription elongation factor NusA [Streptococcus pyogenes MGAS5005] gi|162139078|ref|YP_597145.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS9429] gi|162139127|ref|YP_601034.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS2096] gi|13622778|gb|AAK34469.1| transcription termination-antitermination factor [Streptococcus pyogenes M1 GAS] gi|71854007|gb|AAZ52030.1| N utilization substance protein A [Streptococcus pyogenes MGAS5005] Length = 385 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEA 363 Query: 353 KD 354 + Sbjct: 364 EK 365 >gi|28895281|ref|NP_801631.1| transcription elongation factor NusA [Streptococcus pyogenes SSI-1] gi|161485737|ref|NP_665302.2| transcription elongation factor NusA [Streptococcus pyogenes MGAS315] gi|209559841|ref|YP_002286313.1| transcription elongation factor NusA [Streptococcus pyogenes NZ131] gi|28810527|dbj|BAC63464.1| putative transcription termination-antitermination factor [Streptococcus pyogenes SSI-1] gi|209541042|gb|ACI61618.1| Transcription termination protein NusA [Streptococcus pyogenes NZ131] Length = 385 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEA 363 Query: 353 KD 354 + Sbjct: 364 EK 365 >gi|310778372|ref|YP_003966705.1| transcription termination factor NusA [Ilyobacter polytropus DSM 2926] gi|309747695|gb|ADO82357.1| transcription termination factor NusA [Ilyobacter polytropus DSM 2926] Length = 356 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 136/356 (38%), Positives = 210/356 (58%), Gaps = 4/356 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGD 59 M S + L+ + EK I ++ ++ + ++ A + YG S I VEIN E+GD Sbjct: 1 MKSKDAKVFLEALTELEKEKGISKESLIETVEQALLAAYKKHYGEEDSSIEVEINRESGD 60 Query: 60 ISLFRLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + ++ + VVE ++ + C+I L+ A +G V+ + +F R A+Q+ KQ+ Sbjct: 61 VKVYEIKTVVEAEDLYDSACEIILEDALLEKKRAKVGDVLKIEVNCEEFRRNAIQNGKQI 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176 +IQKVREAER + +FK + +II+G ++R + N+ ++ + ++ E + Sbjct: 121 VIQKVREAERQFVFDKFKSREKDIINGIIRRIDDRRNIFIEFDGIEAMLPIVEQSPSDVY 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R GDR+K Y+ +V + R P++L+SR H + KLF +E+PEI +G++++KAV+R+ GSR Sbjct: 181 RVGDRLKVYVVEVEKTSRFPKILISRKHEGLLKKLFELEIPEIEDGLIEIKAVAREAGSR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV+S + ID VGAC+G +G R++ VV EL EKIDIV W FV AL PA V Sbjct: 241 AKVAVYSENKEIDTVGACIGQKGLRIKNVVNELNGEKIDIVEWLDSQEEFVSAALSPAKV 300 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V + ED VIV QLSLAIG+ GQN RLA++LTG +DI T E + Sbjct: 301 MSVEVLEDQVTARVIVDTSQLSLAIGKNGQNARLAAKLTGMRVDIKTPEAAAEEEN 356 >gi|256784869|ref|ZP_05523300.1| transcription elongation factor NusA [Streptomyces lividans TK24] gi|289768763|ref|ZP_06528141.1| transcription termination factor NusA [Streptomyces lividans TK24] gi|289698962|gb|EFD66391.1| transcription termination factor NusA [Streptomyces lividans TK24] Length = 340 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 132/340 (38%), Positives = 195/340 (57%), Gaps = 21/340 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPDDLEEGQAAREFDD------------TPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGARLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325 >gi|258647228|ref|ZP_05734697.1| transcription termination factor NusA [Prevotella tannerae ATCC 51259] gi|260852981|gb|EEX72850.1| transcription termination factor NusA [Prevotella tannerae ATCC 51259] Length = 419 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 136/410 (33%), Positives = 234/410 (57%), Gaps = 11/410 (2%) Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E++ + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD + Sbjct: 5 KAEVISLTDTFAEFKENKNIDRTTLVSVLEESFRSVITKLFGSDENFDVIVNPDKGDCEI 64 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV + VE++ QISL AR+ D + G VS+P+ FGR A+ + +Q + Sbjct: 65 YRNRVVVADNAVEDHKSQISLTEAREIDSDYEEGEEVSEPINFAKFGRRAILTLRQTLAS 124 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+ E + D + ++KD+VGEII+ V + + +++D ++ + +++ I R+ G Sbjct: 125 KLLELDHDALFNKYKDRVGEIIAAEVYQTWKQETLLMDDEGNELYLPKNQQIPRDFFHKG 184 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D V++ I V P++ LSRT P+F+ +L E+PEI +G++ +K ++R PG RAK+ Sbjct: 185 DNVRAVIDRVDNLNGTPKIFLSRTSPEFLRRLLEQEIPEIGDGLISLKRIARIPGERAKI 244 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + A F+ AL PA V+ + Sbjct: 245 AVESYDDRIDPVGACVGVKGSRIHGIVRELHNENIDVINYTSNPALFIQRALNPAQVSSI 304 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 LDE+ + +V + E++SLAIG+ GQN++LAS LT +TID+ E E F + Sbjct: 305 QLDEENRKAQVYLRPEEVSLAIGKGGQNIKLASMLTEYTIDVFREVEGDDQEDDIFLDEF 364 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 +D+ + + + G +++ + +E T E+ Sbjct: 365 AD-----EIDQWVIDAIKSIGLQTAKDVLNAPRQMLIEKADLEESTVDEV 409 >gi|167751252|ref|ZP_02423379.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702] gi|167655759|gb|EDR99888.1| hypothetical protein EUBSIR_02238 [Eubacterium siraeum DSM 15702] gi|291556761|emb|CBL33878.1| transcription termination factor NusA [Eubacterium siraeum V10Sc8a] Length = 370 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 129/351 (36%), Positives = 201/351 (57%), Gaps = 4/351 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLR 177 Q ++E ER++ ++ E ++ TV + E N V+L ++ + R E I E LR Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLR 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+ Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPESGF 351 >gi|330833473|ref|YP_004402298.1| transcription elongation factor NusA [Streptococcus suis ST3] gi|329307696|gb|AEB82112.1| transcription elongation factor NusA [Streptococcus suis ST3] Length = 380 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 205/363 (56%), Gaps = 15/363 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + + I++ ++ + +S+ A + YG +E + + GD +F + E Sbjct: 4 EMLEAFRILEEDMGINKADIIDAVTESLCSAYKRRYGQSESAVIEFDEKKGDFHVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ +R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYEMGDKIKFQEDPAEFGRVAAQSAKQTIMEKMRKQKR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + +K EI+SGTV+R + + V+LG + + + + I E + DR++ Y+Y Sbjct: 124 AITFNTYKQHENEIMSGTVERFDNRFIYVNLGTIEAQLSKQDQIPGEVFQSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNGRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ + ++ E ID++ W D A F+ NAL P Sbjct: 244 VDAIGTIVGRGGSNIKKITSKFHPARYDAKNDRMIPTEENIDVIEWVADEAEFIYNALAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ D ED V+VP ++LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVLFDTEDGKHATVVVPDDKLSLAIGRRGQNVRLAAHLTGFRIDIKSASEYEAFEA 363 Query: 353 KDF 355 + Sbjct: 364 TQY 366 >gi|313124031|ref|YP_004034290.1| transcription elongation factor nusa [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280594|gb|ADQ61313.1| transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685946|gb|EGD28009.1| N utilization substance protein A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 383 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 219/370 (59%), Gaps = 3/370 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L Sbjct: 4 EMLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKT 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV++ ++SLK A + + ++G + + P DFGR A +AKQV++Q++REAE Sbjct: 64 VVDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKDFGRTAAATAKQVVMQRLREAEN 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYI 186 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 124 AHIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKRDTIPGEHYNPQDRVRVLV 183 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 V + +G Q+ +SRT P + +LF EVPEI++G V++ +++R+ G R K+AV S+D Sbjct: 184 TKVGADGKGAQIRVSRTAPDVVKRLFEQEVPEIFDGTVEIISIAREAGERTKIAVKSNDP 243 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DED 304 +IDPVG CVG RGSRVQ VV EL E IDIV + D + ++ NAL PA V V ++D Sbjct: 244 NIDPVGTCVGPRGSRVQNVVNELGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDD 303 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 304 ERKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAED 363 Query: 365 AINVDEIIAH 374 Sbjct: 364 QDLQQTEAEE 373 >gi|269795641|ref|YP_003315096.1| transcription termination factor NusA [Sanguibacter keddieii DSM 10542] gi|269097826|gb|ACZ22262.1| transcription termination factor NusA [Sanguibacter keddieii DSM 10542] Length = 365 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I DV++S + ++ A + G RVEI+ ++G ++++ ++ Sbjct: 5 MSALRLLEREREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWAREDIE 64 Query: 70 EEVENYTCQISLKVARDRDPSID--------IGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 E A + +G D P DFGR+A +A+QVI+Q+ Sbjct: 65 TEEPVEPRYSDGDDADGTEDDEAPTTRVVRTLGPEFDD--TPTDFGRIATSTARQVIMQR 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +R+AE D+ +F+DK GE++SG +++ + V+VD+G ++ V+ E + E G+ Sbjct: 123 LRDAEDDQVLGQFRDKEGELVSGIIQQGRDPRVVLVDVGGTEAVLGAHEQVPTEKYTHGE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++SY+ DV R +GPQ+ LSRTHP + KLF MEVPE+ +G V++ A++R+ G R K+A Sbjct: 183 RLRSYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRTKMA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + S ++ GAC+G GSRV+AV+ EL DEKIDIV W+ D A FV +AL PA V V Sbjct: 243 VRARVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVISVT 302 Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D D VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 303 VVDADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDGGGAEGSDDASTTSS 362 Query: 360 QF 361 Sbjct: 363 DP 364 >gi|227537266|ref|ZP_03967315.1| transcription elongation factor NusA [Sphingobacterium spiritivorum ATCC 33300] gi|300772910|ref|ZP_07082779.1| transcription termination factor NusA [Sphingobacterium spiritivorum ATCC 33861] gi|227242870|gb|EEI92885.1| transcription elongation factor NusA [Sphingobacterium spiritivorum ATCC 33300] gi|300759081|gb|EFK55908.1| transcription termination factor NusA [Sphingobacterium spiritivorum ATCC 33861] Length = 412 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 127/393 (32%), Positives = 229/393 (58%), Gaps = 10/393 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV--ENYTC 77 K+IDR V+SV+ + + R +GT ++ V +NP+ GD+ ++R VVE+ E+ Sbjct: 18 KNIDRPTVISVLEEVFRSMIRKRFGTDENVDVIVNPDNGDLEIWRTRVVVEDEFSEDDDL 77 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A D +++G + + FGR A+ +A+Q ++ K+ E E+D + ++KD+ Sbjct: 78 EIELAEAVKHDADLEVGDDYIEQITLESFGRRAILAARQTLVSKILELEKDEVFKKYKDR 137 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 GE++ G V ++ ++V D ++ ++ + E I + + GD +++ ++ V P Sbjct: 138 EGELVIGEVYQIWKKEILVLDDDGNELILPKTEQIPADYFKKGDSIRAVVHKVDMMNNNP 197 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRT P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 198 KIIISRTAPAFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 257 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V ELR+E ID++ ++ + + ++ AL PA ++ + +DED V + +Q Sbjct: 258 MKGSRIHGIVRELRNENIDVINFTTNHSLYITRALSPARISSIKIDEDNKTAAVYLKSDQ 317 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LA +LTG+ ID+ E + +F+E + ++ + L Sbjct: 318 VSLAIGRGGHNIKLAGKLTGYEIDVYREND-------EFDEDVDIEEFSDEIEGWVIDEL 370 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409 G + + + E+ +E+T EI Sbjct: 371 KRVGLDTAKSVLSLTEEELVRRTDLEEDTIQEI 403 >gi|257457666|ref|ZP_05622833.1| transcription elongation factor NusA [Treponema vincentii ATCC 35580] gi|257445052|gb|EEV20128.1| transcription elongation factor NusA [Treponema vincentii ATCC 35580] Length = 485 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 144/437 (32%), Positives = 238/437 (54%), Gaps = 19/437 (4%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISLFRLLEVVE 70 A EK +D D+ + ++ +++ A ++ + T ++ V TGD I+++ ++V+ Sbjct: 9 VRKFALEKELDEDLAIKIVEQTLKAAYKTAFKTDANAVVI----TGDDAINIYARKKIVD 64 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +V ++ ++ A P +IG + L P DF R ++Q+ Q + Q RE ++D Sbjct: 65 DVVKPELEVDIEEATKLAPDCEIGDELLFELDPKDFKRGSIQAGVQRVHQSTREIQKDSI 124 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 Y E+K K GEII G +R + N+ VDLG +G++ R + +E P DR+K+ I +V+ Sbjct: 125 YSEYKAKEGEIIIGYYQRKKNDNIYVDLGKVEGLLPRKFQLPQEIYHPNDRIKALIKEVK 184 Query: 191 REQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 + ++ Q++LSRT P F+ +L +EVPEIY+ IV++ + R+PG R K+AV S + Sbjct: 185 KHRQSNVVQLILSRTDPDFVRRLMELEVPEIYDNIVELYKIVREPGYRTKVAVISHREDV 244 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 DPVGACVG +GSR+Q ++TEL EKID++ +S D A F+ NAL PA V VV+ D + Sbjct: 245 DPVGACVGPKGSRIQTIITELEGEKIDVLEYSSDPAVFIANALSPAEVLNVVILDAEKRM 304 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA-- 365 +V + QLS+AIG++G NVRLA++L W+ID+ TE++ + + Sbjct: 305 ALAVVAESQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFQEMDIHAETRKAAEELFNDD 364 Query: 366 -------INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D + L VE+L + E+ ++ G EE A ++ E E Sbjct: 365 AVLLKDVEGIDPGVLAALHENHIETVEQLLDIPHEELRALPGMSEEKAAALEALINETFE 424 Query: 419 GIDITLQKKIRELGVSE 435 ID Q+ +E Sbjct: 425 IID-ENQESAQEPQPEN 440 >gi|225848027|ref|YP_002728190.1| transcription termination factor NusA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644454|gb|ACN99504.1| transcription termination factor NusA [Sulfurihydrogenibium azorense Az-Fu1] Length = 370 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 155/364 (42%), Positives = 225/364 (61%), Gaps = 18/364 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLE 67 L + + VA EK+I +V+ + D I A + Y +D I+V + + ++ + + Sbjct: 5 LKNVIETVAKEKNIPEEVIERALKDGIFVAVKKEYKLRNDQIKVIYDKDKDELKVLIKKK 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V VE+ +ISL+ A+ +P++D G V PL D GR+A+ AK+VI +KV ER Sbjct: 65 VTPFVEDEKKEISLEEAKKYNPNVDYGKFVEVPLDLEDIGRIALSVAKEVIAEKVSRVER 124 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 D Y EFK+ G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDRV++ + Sbjct: 125 DILYKEFKEYEGKIITGTVRRFEGEDIIVDLGRVEAILPKEEQIPKEKYKIGDRVRALVL 184 Query: 188 DVRREQRGPQ-----------------VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 V +E + P ++LSRTHP F+ KL +EVPEI G ++VKAV+ Sbjct: 185 KVLKENKYPILEKGKVKRVIKVSEGPLIILSRTHPNFLKKLLEIEVPEIQEGEIEVKAVA 244 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R+PG RAK+AV++ D +IDPVG VG++GSR+Q V EL DEKID++ WS D A FVI A Sbjct: 245 REPGERAKVAVYTKDKNIDPVGVVVGLKGSRIQNVSNELSDEKIDVIEWSEDPARFVIRA 304 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 L PA TK L RIEV VPKE+LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 305 LSPARPTKYRLLPKEKRIEVAVPKEELSLAIGKNGINAKLAHKLTGWHIDILSEEDFEKI 364 Query: 351 RQKD 354 ++ Sbjct: 365 QKLP 368 >gi|103423295|emb|CAI98136.1| Transcription elongation factor NusA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 402 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 136/360 (37%), Positives = 216/360 (60%), Gaps = 3/360 (0%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ D + K I +DV++ M ++ A + YG ++ ++ N + GD + L V Sbjct: 1 MLEAFDVLEKTKGIKQDVIVEAMKAALAAAYKKNYGLAENVEIDFNEKKGDFKVMALKTV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV++ ++SLK A + + ++G + + P +FGR A +AKQV++Q++REAE Sbjct: 61 VDEVQDDRVEVSLKDALAINRAYEVGDTIKFEVTPKNFGRTAAATAKQVVMQRLREAENA 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVI-RRDETISRENLRPGDRVKSYIY 187 E+ E+++GTV+R + V V++GN + V+ + +TI E+ P DRV+ + Sbjct: 121 HIVNEYSQYEDELVTGTVERTDNRFVYVNIGNVEAVMDIKCDTIPGEHYNPQDRVRVLVT 180 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +G Q+ +SRT P + + F EVPEI++G V++ +++R+ G R K+AV S+D + Sbjct: 181 KVGADGKGAQIRVSRTAPDVVKRFFEQEVPEIFDGTVEIMSIAREAGERTKIAVKSNDPN 240 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 IDPVG CVG RGSRVQ VV L E IDIV + D + ++ NAL PA V V ++ D Sbjct: 241 IDPVGTCVGPRGSRVQNVVNALGGENIDIVQYEEDPSDYIANALNPAEVIAVQFEDEDDE 300 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + VIVP QLSLAIG++GQNVRLA++LTG+ IDI E E + + + T+ Sbjct: 301 RKAFVIVPDYQLSLAIGKKGQNVRLAARLTGYKIDIRPESEVEFVDESEVEDETEVAEDQ 360 >gi|269956009|ref|YP_003325798.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269304690|gb|ACZ30240.1| NusA antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 344 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 127/336 (37%), Positives = 200/336 (59%), Gaps = 15/336 (4%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEE 71 + E+ + DV++ + ++ A + RVE++ TG ++++ E + Sbjct: 8 LRLLERERDLSLDVLVEAIESALLHAYHRTPDAYAKARVEVDRRTGHVTVWAREEFRTPD 67 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + + P +++G P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 68 PSDP----------EGRPLVELGP--EFDHTPQDFGRIATATARQVIVQRLRDAEDDQVL 115 Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 F+ K GE+I+G +++ + V+VD+G ++ V+ E + E G+R+++Y+ +V Sbjct: 116 GLFRGKEGEVIAGVIQQGRDPRVVLVDVGGTEAVLPPHEQVPTEEYVHGERLRAYVVEVA 175 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +G QV LSRTHP + KLF +EVPE+ +G V++ A++R+ G R+K+AV S ++ Sbjct: 176 RGAKGAQVTLSRTHPGLVRKLFELEVPEVADGSVEITAIAREAGHRSKVAVRSRVQGLNA 235 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309 GAC+G G+RV+AV+ EL EKIDIV S D A FV NAL PA VT V +DED Sbjct: 236 KGACIGPMGARVRAVMAELHGEKIDIVDHSDDPARFVANALSPARVTSVTVVDEDARAAR 295 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 296 AVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDE 331 >gi|291531685|emb|CBK97270.1| transcription termination factor NusA [Eubacterium siraeum 70/3] Length = 370 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 201/351 (57%), Gaps = 4/351 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++N EL + +A EK ID V++ + ++ A + Y +I+ +I+ G Sbjct: 1 MANSNTTELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKF 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 + EV EVE+ QIS++ A+ ++ G +V+ L FGR+A Q+AKQVI Sbjct: 61 DVAIQKEVAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIK 120 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYG--NVIVDLGNSDGVIRRDETISRENLR 177 Q ++E ER++ ++ E ++ TV + E N V+L ++ + R E I E L+ Sbjct: 121 QGLKEIEREQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGNEVPLFRSEQIPGEVLK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGD VK Y+ V P + +SR + + + +LF EVPEIY+G V++KA+SR+ GSR+ Sbjct: 181 PGDMVKVYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRS 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S++ +D +GAC+G R+ V EL EK+D+V +S F+ AL+P+ V Sbjct: 241 KVAVISNNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVI 300 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +V + D +V IVP QLSLAIG +GQN +LA++LTG+ IDI E Sbjct: 301 RVEIPDPEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPESGF 351 >gi|319939747|ref|ZP_08014104.1| transcription termination factor NusA [Streptococcus anginosus 1_2_62CV] gi|319811085|gb|EFW07396.1| transcription termination factor NusA [Streptococcus anginosus 1_2_62CV] Length = 397 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 128/383 (33%), Positives = 211/383 (55%), Gaps = 15/383 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E N +TGD ++ + E Sbjct: 4 EMLEAFRILEEDKGIKKEDIIEAVTESLRSAYRRRYGQADSAAIEFNEKTGDFRVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y ++K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 124 AITYNKYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 ID +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 IDAIGTIVGRGGANIKKITSKFHPAKYDAKSDRMIPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ D +D V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 304 AEVDQVIFDSQDSKHALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMEE 363 Query: 353 KDFNERTQFFMQAINVDEIIAHL 375 ++ E Sbjct: 364 AGELGGFAEEVEEFTAVESPVET 386 >gi|29829095|ref|NP_823729.1| transcription elongation factor NusA [Streptomyces avermitilis MA-4680] gi|29606201|dbj|BAC70264.1| putative transcriptional termination/antitermination factor [Streptomyces avermitilis MA-4680] Length = 328 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 131/344 (38%), Positives = 196/344 (56%), Gaps = 23/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A++ ++ G P FGR+A +AKQVI+Q++R+AE D Sbjct: 59 --------------AKEDPEDLEEGQEAREFDDTPSGFGRIAATTAKQVILQRLRDAEDD 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ + G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+ Sbjct: 105 ATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGLRLRSYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 ++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 225 LNAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S + Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQSGD 328 >gi|256396850|ref|YP_003118414.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928] gi|256363076|gb|ACU76573.1| NusA antitermination factor [Catenulispora acidiphila DSM 44928] Length = 324 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 130/338 (38%), Positives = 200/338 (59%), Gaps = 25/338 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + ++ I + ++ + ++ A + G + RV+++ +G ++++ VE+ Sbjct: 7 ALRDLEKDRGIPFEKLVEDIEAALLIAYKRTDGAKTRARVQVDRSSGHVTVWA----VED 62 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 +E+ G P +FGR+A +AKQVI+Q++R+ E ++ + Sbjct: 63 IED-------------------GSTREYDDTPSEFGRIASTTAKQVILQRLRDHEDEQTF 103 Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 EF + G++I+G V++ + V+V++G +G + E + E R G+R+K Y+ DVR Sbjct: 104 GEFSGRKGDLITGVVQQGRDPRAVLVNIGKIEGTLPAAEQVPGEEYRHGERLKCYVVDVR 163 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R QRGPQV LSRTHP + KLF +EVPEI G V++ A++R+ G R K+AV S + ++ Sbjct: 164 RGQRGPQVTLSRTHPDLVRKLFALEVPEIAEGAVEITAIAREAGHRTKIAVRSHRAGVNA 223 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309 GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D D Sbjct: 224 KGACIGPMGARVRNVMAELHGEKIDIVDWSEDPAEMVGNALSPARVSKVQVVDLDQRSAR 283 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 284 VIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEP 321 >gi|323127911|gb|ADX25208.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 385 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRFEA 363 Query: 353 KDFNER 358 + Sbjct: 364 EKEAAM 369 >gi|329936656|ref|ZP_08286363.1| transcriptional termination/antitermination factor [Streptomyces griseoaurantiacus M045] gi|329303886|gb|EGG47769.1| transcriptional termination/antitermination factor [Streptomyces griseoaurantiacus M045] Length = 330 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 198/345 (57%), Gaps = 21/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ ++G ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTDGSRRHARVELDRDSGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E+ + G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYQHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+ V +D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSAVDVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + R Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAEPRD 330 >gi|284044673|ref|YP_003395013.1| NusA antitermination factor [Conexibacter woesei DSM 14684] gi|283948894|gb|ADB51638.1| NusA antitermination factor [Conexibacter woesei DSM 14684] Length = 503 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 140/365 (38%), Positives = 219/365 (60%), Gaps = 24/365 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L +A EK+I + ++ + D++ A + G +VE++ E GD +++ L+ Sbjct: 4 EILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVW-ELK 62 Query: 68 VVEEVEN----YTCQISLKVARDRDPS-----------------IDIGGVVS-DPLPPMD 105 + E++E+ +I DP + + + P D Sbjct: 63 IPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEYEDQIERVDVTPED 122 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGV 164 FGR+A Q+AKQVI+Q++REAERD + E++D+VGE+I+G V++ + +V L + + Sbjct: 123 FGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERVEAL 182 Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 + + E + E R+K+ I DV +GP +++SR P+ + LF +EVPEI +G+V Sbjct: 183 LPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIADGLV 242 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++ V+R+PG R+K+AV S +DPVGACVG RGSRV+ VV+ELR EKIDI+ ++ + A Sbjct: 243 EITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYNDEPA 302 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV AL PA V +V++D+D + VIVP +QLSLAIGR GQN RLA++LTGW IDI +E Sbjct: 303 RFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDIRSE 362 Query: 345 EEDSI 349 E + Sbjct: 363 TEFAS 367 >gi|290957021|ref|YP_003488203.1| transcriptional termination/antitermination factor [Streptomyces scabiei 87.22] gi|260646547|emb|CBG69644.1| putative transcriptional termination/antitermination factor [Streptomyces scabiei 87.22] Length = 328 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 131/341 (38%), Positives = 195/341 (57%), Gaps = 23/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIEAALLIAYHRTEGSRRHARVELNRETGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVS-DPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A++ ++ G P DFGR+A +AKQVI+Q++R+AE D Sbjct: 59 --------------AKEDPEDLEEGQEARAFDDTPSDFGRIAATTAKQVILQRLRDAEDD 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ + G+I++G V++ + NV+VD+G + ++ E + E + G R++SY+ Sbjct: 105 ATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYQHGMRLRSYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVAKGVRGPSVTLSRTHPSLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 ++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 225 LNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325 >gi|149277310|ref|ZP_01883452.1| transcription elongation factor NusA [Pedobacter sp. BAL39] gi|149232187|gb|EDM37564.1| transcription elongation factor NusA [Pedobacter sp. BAL39] Length = 411 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 130/395 (32%), Positives = 227/395 (57%), Gaps = 10/395 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR V+SV+ + + R YGT + V +NP+ GD+ ++R +V+E+ E+ Sbjct: 17 KNIDRPTVISVLEEVFRSMLRKKYGTDENCDVIVNPDNGDLEIWRTRKVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L + D +++G + + FGR A+ +A+Q ++ KV E E+D + ++KD+ Sbjct: 77 EIELAEVKLLDADMEVGDDYIEQITLESFGRRAILAARQTLVSKVLELEKDEIFKKYKDR 136 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGEI++G V + + +++D ++ ++ + E I + + GD V++ I V P Sbjct: 137 VGEIVTGEVYQVWKKETLVLDDEGNELMMPKTEQIPADYFKKGDTVRAVILKVDMVNATP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SR P F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 197 KIIISRIAPDFLQRLFEIEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V EL++E ID++ ++ + + ++ AL PA +T + LD++ V + +Q Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNISLYITRALSPAKITSIKLDDETKHASVYLKPDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LA +LTG+ ID+ E + + +D I L Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREAGEEDEDVDIEE-------FSDEIDSWIIDEL 369 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 A G + + + I E+ +EET E+ Sbjct: 370 KAIGCDTAKSVLALSIDELVKRTDLEEETIKEVMS 404 >gi|325286756|ref|YP_004262546.1| NusA antitermination factor [Cellulophaga lytica DSM 7489] gi|324322210|gb|ADY29675.1| NusA antitermination factor [Cellulophaga lytica DSM 7489] Length = 410 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 135/419 (32%), Positives = 230/419 (54%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ + + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEEVFRNALKKKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRIVVEDGEVEEPNEEISLTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + VI VD ++ V+ +D I + R GD Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHRAVILVDDEGNEIVMPKDRQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P+F+ +LF E+PE+++G++ +K R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPSIIMSRTSPKFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVG++GSR+ +V EL +E ID+V W+ + V AL PA ++ V Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVVNWTSNPQLLVTRALSPAKISSVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LD++ +V + +++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 301 LDDEKMTAQVYLKPDEVSRAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D I G + ++A + ET +E+ +E LE Sbjct: 358 ------EIDNWIIEEFKKIGLDTARSVLEQDSEDLAKRTDLEVETILEVVRILKEELED 410 >gi|322412488|gb|EFY03396.1| transcription elongation factor NusA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 385 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 15/366 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQAESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR++ Y+Y Sbjct: 124 EVTFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + + Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V+++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISKFHPKRLDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAP 303 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ D+D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + + Sbjct: 304 AEVDMVLFDDDDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASDYDRLEA 363 Query: 353 KDFNER 358 + Sbjct: 364 EKEAAM 369 >gi|154491955|ref|ZP_02031581.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC 43184] gi|154088196|gb|EDN87241.1| hypothetical protein PARMER_01585 [Parabacteroides merdae ATCC 43184] Length = 424 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 137/412 (33%), Positives = 238/412 (57%), Gaps = 12/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D + ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLFAKYKDKIGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + E++SLAIG+ G N++LA LT + ID+ + E + +E Sbjct: 302 SIRVNEEEHKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYAIDVFRDVEGADEEDIYLDE 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + L G + + + EI +E+T E+ Sbjct: 362 FSD------EIDSWVIEALKNIGCYTAKSVLAMNREEIVERADLEEQTVDEV 407 >gi|239928612|ref|ZP_04685565.1| transcription elongation factor NusA [Streptomyces ghanaensis ATCC 14672] gi|291436937|ref|ZP_06576327.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672] gi|291339832|gb|EFE66788.1| transcriptional termination [Streptomyces ghanaensis ATCC 14672] Length = 328 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 131/343 (38%), Positives = 197/343 (57%), Gaps = 21/343 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E+ G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGESYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQAGE 328 >gi|330997781|ref|ZP_08321616.1| transcription termination factor NusA [Paraprevotella xylaniphila YIT 11841] gi|329569669|gb|EGG51434.1| transcription termination factor NusA [Paraprevotella xylaniphila YIT 11841] Length = 420 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 144/423 (34%), Positives = 235/423 (55%), Gaps = 11/423 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV + E + +ISL AR D ++G VS+ + FGR A+ + +Q + Sbjct: 62 EIYRNRTVVADGEVKDGNREISLTEARQIDEDYEVGEEVSENVDFAGFGRRAILTLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E D Y ++KD+VGEI+S V + + + VD ++ ++ + E I + R Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPATVN 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E E + D Sbjct: 302 SVRIHEEERKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFREIEGAEGEGDDIYL 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREY 416 ++D+ I L G +++ + S +EET E ++ A E+ Sbjct: 362 DEFVG----DIDQWIIDALKGIGMETAKDVLNAPREMLVSRADLEEETVDEVLRILAEEF 417 Query: 417 LEG 419 E Sbjct: 418 EEE 420 >gi|312130305|ref|YP_003997645.1| nusa antitermination factor [Leadbetterella byssophila DSM 17132] gi|311906851|gb|ADQ17292.1| NusA antitermination factor [Leadbetterella byssophila DSM 17132] Length = 414 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 134/415 (32%), Positives = 237/415 (57%), Gaps = 9/415 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L++ A EK+IDR +++++ D ++ R YG + + +NPE+GD+ ++R E Sbjct: 5 DLIESFAEFAREKNIDRPTMIAILEDVLRTMIRKAYGEDHNFDIILNPESGDLEMWRKRE 64 Query: 68 VVEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 +V++ +I L A+ +P +IG V++P+ DFGR VQ+A+Q +IQKV++ Sbjct: 65 IVDDNSEDIWDHDKIPLSEAKKIEPDFEIGEEVAEPVKIEDFGRRIVQTARQTLIQKVKD 124 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVK 183 E++ Y ++KD+VGE+++ V ++ VI +D ++ + + E I ++ + G ++ Sbjct: 125 LEKEMLYDQYKDQVGELVTVEVYQILSREVICIDEEGNELSLPKGEQIPKDRFKKGSSIR 184 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I+ V P++ LSRT P F+ +LF +E+PEI +GI+ ++ + R+PG RAK+AV S Sbjct: 185 AIIHKVEIHNGNPKLTLSRTSPVFLERLFELEIPEIQDGIISIRKIVREPGERAKVAVES 244 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 D IDPVGACVGM+GSR+ ++V EL +E ID++ W+ + + AL PA ++ V DE Sbjct: 245 FDDRIDPVGACVGMKGSRIHSIVRELENENIDVIQWTDNINLLISRALSPAKISNVRFDE 304 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + R+ V + +Q+SLAIG+ G N++LAS+L G ID+ + + + E Sbjct: 305 NAERVSVFLKPDQVSLAIGKGGLNIKLASKLIGLEIDVFRDIDGVVEE-----EDVDLME 359 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++E I G + + V ++ +EET E+ ++ E Sbjct: 360 FTDEIEEWILLEFRKIGLDTAKSVLNVPKEDLVRRTPLEEETIEEVFDILKKEFE 414 >gi|34540099|ref|NP_904578.1| transcription elongation factor NusA [Porphyromonas gingivalis W83] gi|188994218|ref|YP_001928470.1| transcription elongation factor NusA [Porphyromonas gingivalis ATCC 33277] gi|34396410|gb|AAQ65477.1| N utilization substance protein A, putative [Porphyromonas gingivalis W83] gi|188593898|dbj|BAG32873.1| putative nitrogen utilization substance protein A [Porphyromonas gingivalis ATCC 33277] Length = 444 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 128/443 (28%), Positives = 241/443 (54%), Gaps = 15/443 (3%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + +++A E K+ID++ +++V+ DS + ++G+ + V INPE GD Sbjct: 2 AKKQETISMIESLAEFKELKNIDKETMINVLEDSFRNVLAKIFGSDDNFDVIINPEKGDF 61 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R +VVE+ VE+ + ++SL A + DP ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRTRQVVEDGAVEDESREVSLSDAHEIDPEAEVGEEVTDSVNFASFGRRAILNLRQAL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E +++ + F +++G++IS V + + +++D ++ ++ + E I + R Sbjct: 122 SSKIMELQKENLFNTFTERIGQLISAEVYQVWKREALLIDDDGNELLMPKSEQIPSDFFR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V + + V P++++SRT +F+ +LF + VPEI +G++ ++ V+R PG RA Sbjct: 182 KGETVHAVVERVENANNNPKIIVSRTSGEFLKRLFELNVPEIADGLITIRCVARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM GSR++ +V ELR E ID+ ++ ++A F+ AL PA ++ Sbjct: 242 KMAVESYDDRIDPVGACVGMNGSRIRGIVRELRGENIDVTQYTTNTALFIQRALSPARIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L E + EV + E++ LAIG+ N++LAS LTG+ I++ + +D +E Sbjct: 302 SIRLLEAEHKAEVFLRPEEVPLAIGKNASNIKLASGLTGYQIEVFRDIDDMDEEDIYLDE 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 +D+ I L G + + ++ ++ T + G Sbjct: 362 ------FNDEIDQWIIDLFKNIGCNTAKSVLSKNREDLIKETDLEDSTIDYVLGVLSAEF 415 Query: 418 EGIDITLQKKIRELGVSEELCSI 440 D + + S++L + Sbjct: 416 ADEDQVTDNQSTD---SDDLDNF 435 >gi|302558072|ref|ZP_07310414.1| transcription termination factor NusA [Streptomyces griseoflavus Tu4000] gi|302475690|gb|EFL38783.1| transcription termination factor NusA [Streptomyces griseoflavus Tu4000] Length = 332 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 196/345 (56%), Gaps = 23/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I ++++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRLLVREKEISLELLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A++ ++ G P FGR+A +AKQVI+Q++R+AE D Sbjct: 59 --------------AKEDPEDLEEGQEAREFDDTPSGFGRIAATTAKQVILQRLRDAEDD 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 105 ATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++ GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V++V + D Sbjct: 225 LNAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSRVDIVDMAAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S ++ Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQSGDQ 329 >gi|119717416|ref|YP_924381.1| transcription elongation factor NusA [Nocardioides sp. JS614] gi|119538077|gb|ABL82694.1| transcription termination factor NusA [Nocardioides sp. JS614] Length = 327 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 131/344 (38%), Positives = 198/344 (57%), Gaps = 24/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + EK I DV++ + ++ A G RV ++ ++G +++ Sbjct: 5 MSILRMLEREKEISFDVLVEAIEQALLTAYHKSPGAHEQARVVLDRKSGHVTVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + G D P FGR+A +AKQ+++Q++R+AE D Sbjct: 59 --------------ASEVDEEGNAVGEYDD--TPAGFGRIAATTAKQIMLQRLRDAEDDV 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 ++ EF K G+IISG +++ +V+VDLG + ++ E + E G R+K + Sbjct: 103 RFGEFSGKEGDIISGIIQQGRNPDDVMVDLGKLEALLPVGERVPGERYDHGTRIKCLVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGPQ+ LSR+HP + KLF +EVPEI +G V++ A++R+ G R KLAV S+ + Sbjct: 163 VRKGMRGPQITLSRSHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKLAVRSTVPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV++EL EKIDIV WS D A V +AL PA VT V + D Sbjct: 223 NAKGACIGPMGSRVRAVMSELHGEKIDIVDWSEDPAEMVAHALSPARVTSVEIVDAAAKS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++E ++ + Sbjct: 283 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDEAEAGSD 326 >gi|21905243|gb|AAM80105.1| putative transcription termination-antitermination factor [Streptococcus pyogenes MGAS315] Length = 381 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 129/361 (35%), Positives = 208/361 (57%), Gaps = 15/361 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + EV Sbjct: 1 MLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 VEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ Sbjct: 61 VEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+K+ GEI++GTV+R + + V+LG+ + + + I E + DR+ Y+Y Sbjct: 121 VMFNEYKEHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGETFKSHDRIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S + ++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEQEIPEVFDGTVEIMSVSREAGDRTKVAVRSHNPNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ V+++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVISKFHPKRVDAKTGLEIPVEENIDVIQWVDDPAEFIYNAIAPA 300 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED+ R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYDRLEAE 360 Query: 354 D 354 Sbjct: 361 K 361 >gi|297202732|ref|ZP_06920129.1| transcription termination factor NusA [Streptomyces sviceus ATCC 29083] gi|297148179|gb|EFH28866.1| transcription termination factor NusA [Streptomyces sviceus ATCC 29083] Length = 328 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 129/343 (37%), Positives = 196/343 (57%), Gaps = 21/343 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV+++ ++G + ++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSHRHARVKLDRDSGHVVVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQEPR---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I+ G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVMGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VARGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQAGD 328 >gi|332295450|ref|YP_004437373.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796] gi|332178553|gb|AEE14242.1| NusA antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 340 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 131/337 (38%), Positives = 217/337 (64%), Gaps = 2/337 (0%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + + + EK + ++S + ++ + + Y + ++ ++I P+TG + + VV Sbjct: 5 LHVLEQLEKEKGVSLPAMISALESALLASYKKYYPS-KNVSLKIIPDTGVLEIVVKKTVV 63 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++V N +ISL AR+ DP ++IG + + P +FGR+A +AKQV QK++EAERD Sbjct: 64 DKVNNIFDEISLTQAREIDPKVNIGETIEIQVDPKNFGRIAALTAKQVWQQKIKEAERDA 123 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + EFKD+V +ISG + R E N IV LG ++G++ + ET+ ++ +R Y+ V Sbjct: 124 VFEEFKDRVFGVISGKILRPEGKNWIVQLGRAEGILPQKETVFQDKYNINERYVFYVLSV 183 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 +++++ +++LSR+HP + ++F +E EI +GIV++ +++RDPGSR K+AV S D +D Sbjct: 184 KKQKKDVEIILSRSHPNLVKRIFELESAEIRSGIVEIVSIARDPGSRTKIAVLSRDPHVD 243 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRI 308 P+G C+G+R SR+Q V ELR EKID+++++PD ++ +AL PA + +V + D+ Sbjct: 244 PLGVCLGIRNSRIQNVTKELRGEKIDVILYNPDPKIYIASALSPAKIKRVEILDQVKKES 303 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V V K QLSLAIG+ QNVRLA +LTG+ IDI EE Sbjct: 304 RVYVDKSQLSLAIGKDAQNVRLAHKLTGYKIDIKIEE 340 >gi|294631732|ref|ZP_06710292.1| transcription termination factor NusA [Streptomyces sp. e14] gi|292835065|gb|EFF93414.1| transcription termination factor NusA [Streptomyces sp. e14] Length = 328 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 131/343 (38%), Positives = 194/343 (56%), Gaps = 21/343 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E+ L+ + P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 EDPED------LEEGQAPR---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYPHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V KV +D Sbjct: 226 NAKGACIGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVHKVEVVDLAARS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQAGE 328 >gi|218264757|ref|ZP_03478469.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii DSM 18315] gi|218221806|gb|EEC94456.1| hypothetical protein PRABACTJOHN_04178 [Parabacteroides johnsonii DSM 18315] Length = 424 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 138/429 (32%), Positives = 241/429 (56%), Gaps = 12/429 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D + ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLFAKYKDKIGNIIAADVYQVWKKEILLLDDEGNELLLPKTEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKIILSRTDKLFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + +++SLAIG+ G N++LA LT + ID+ + E + +E Sbjct: 302 SIRVNEEERKAEVYLHPDEVSLAIGKGGLNIKLACMLTEYAIDVFRDLEGADEEDIYLDE 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + L G + + + EI +E+T E+ Sbjct: 362 FSD------EIDSWVIEALKNIGCYTAKSVLAMSREEIIERADLEEQTVDEVLAILSAEF 415 Query: 418 EGIDITLQK 426 E Q+ Sbjct: 416 EEEQDETQE 424 >gi|116515364|ref|YP_815985.1| transcription elongation factor NusA [Streptococcus pneumoniae D39] gi|116075940|gb|ABJ53660.1| transcription termination factor NusA [Streptococcus pneumoniae D39] Length = 378 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 210/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEVFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363 >gi|32473747|ref|NP_866741.1| transcription elongation factor NusA [Rhodopirellula baltica SH 1] gi|32444283|emb|CAD74281.1| N utilization substance protein A [Rhodopirellula baltica SH 1] Length = 498 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 37/407 (9%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I+ Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIAA- 59 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +L +PL GR+ Q+AKQVIIQKVR Sbjct: 60 ----------------TLA---------------GEPLGDDQIGRIGAQTAKQVIIQKVR 88 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV+ Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVR 148 Query: 184 SYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV Sbjct: 149 AIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVS 208 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L Sbjct: 209 SEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLC 268 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E ++ +Q Sbjct: 269 DMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEEQIERAVGGFSQIP 328 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + E IA LV +G+ ++L+ ++ + G E I Sbjct: 329 ----GITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRI 371 >gi|312880100|ref|ZP_07739900.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260] gi|310783391|gb|EFQ23789.1| NusA antitermination factor [Aminomonas paucivorans DSM 12260] Length = 375 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 127/337 (37%), Positives = 220/337 (65%), Gaps = 3/337 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ + EK + +++ S + ++ A + G + V ++ E G+ISL + + Sbjct: 6 DFVRALRQIESEKGLSEEIIASSLEAALVSAYKKFKGGNQTVEVFLDFENGEISLCEVRQ 65 Query: 68 VVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VV E+EN +++L A ++ G V+ + P +FGR+A Q+A+QVIIQ++++AE Sbjct: 66 VVGEIENPDQEVTLDEAHAMGFADVESGDVIRIEVFPENFGRIAAQTARQVIIQRLKDAE 125 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSY 185 R + EF D++G++++G++ + E ++V + ++ ++ R+E I E PGDR+K + Sbjct: 126 RQVIFEEFADRIGDLVTGSIFKTEGDQILVRVNERTEAILPREERIVGEAYHPGDRLKFF 185 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DVR+ RGP++++SRTHP + +L +E+PEI G ++++ + R+ G+RAK+AV S D Sbjct: 186 LLDVRQTTRGPRIVVSRTHPGLLRRLLELEIPEIQEGTIEIRNIVREAGARAKVAVASLD 245 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDED 304 +++DPVGACVG RG+R++++ EL E+ID++VWS D +V NAL PA + K+ + E Sbjct: 246 TNVDPVGACVGSRGTRIKSISGELGGERIDVIVWSSDPLAYVRNALSPAKIAKIEPILEQ 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V V +QLSL+IG+ GQNVRLA++LTGW IDI Sbjct: 306 EKALRVFVRPDQLSLSIGKAGQNVRLAARLTGWKIDI 342 >gi|282857788|ref|ZP_06266997.1| transcription termination factor NusA [Pyramidobacter piscolens W5455] gi|282584458|gb|EFB89817.1| transcription termination factor NusA [Pyramidobacter piscolens W5455] Length = 364 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 137/340 (40%), Positives = 213/340 (62%), Gaps = 5/340 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 ++ L + E+ + +V+ S + ++ A R D V I+ TG +S+F + Sbjct: 5 VDFLGALKQLGEERGLSEEVIFSSIEAALALAYRKFRDGKFDPVVAIDRATGSVSIFDVR 64 Query: 67 EVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123 V+ + +ISL AR P + G V P+ P FGR+A Q+A+QVI Q+++ Sbjct: 65 RAVDAETHSDSEISLAEARALGYPDVREGDSVKVPVLEHPKSFGRIAAQTARQVITQRLK 124 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 +AER+ Y EF DK+G++I+ T+ + E ++V L S+ V+ R+E I+ E PG+ Sbjct: 125 DAEREIVYNEFNDKIGDLITATIFKAENDQILVRLSERSEAVLPREERIAGEVYTPGESK 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K ++ DVR+ RGP++++SRTHP + KL +E+PEI++G V++K + R+ G+RAK+AV Sbjct: 185 KFFLLDVRQTGRGPRIVVSRTHPGLLRKLLELEIPEIHDGTVEIKGIVREAGARAKVAVA 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D ++D VGACVG G+R++++ +L DEKIDI+VW+ D F+ NAL PA VT V Sbjct: 245 STDPAVDSVGACVGNSGARIRSISADLCDEKIDIIVWNEDPLEFIRNALSPARVTGVEAV 304 Query: 303 E-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E +V P +QLSLAIG+ GQNVRLA++LTGW +DI Sbjct: 305 EGQDRTAKVYAPADQLSLAIGKAGQNVRLAARLTGWKVDI 344 >gi|295132451|ref|YP_003583127.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87] gi|294980466|gb|ADF50931.1| transcription elongation factor NusA [Zunongwangia profunda SM-A87] Length = 410 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 137/419 (32%), Positives = 234/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +K IDR +++++ D + A + YG + + +NP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +ISL AR +P ++G VS+ + D GR A+ + +Q +I K Sbjct: 61 RNRVVVADGEVEDPNQEISLAEARKIEPDFEVGEDVSEEVKLKDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + +I +D ++ V+ +D I + R G+ Sbjct: 121 IHEHDNTNIYKQFKDLEGEIYTAEVHHIRHRAIILLDDEGNEIVLPKDRQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P ++LSRT P F+ KLF E+PE+++G++ +K V R PG +AK+A Sbjct: 181 NVRGVIESVELKGNKPSIILSRTAPAFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHSIVRELGNENIDVINYTNNDQLFITRALSPAKITSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ R EV++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 301 IDEENKRAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELSEFSD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + ++++ +EET E+ RE E Sbjct: 358 ------EIEDWVIKEFAKIGLDTAKSILEQDVNDLIKRTDLEEETVREVLKVLREEFEE 410 >gi|256838936|ref|ZP_05544446.1| transcription termination factor NusA [Parabacteroides sp. D13] gi|262382600|ref|ZP_06075737.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B] gi|301308163|ref|ZP_07214117.1| transcription termination factor NusA [Bacteroides sp. 20_3] gi|256739855|gb|EEU53179.1| transcription termination factor NusA [Parabacteroides sp. D13] gi|262295478|gb|EEY83409.1| transcription termination factor NusA [Bacteroides sp. 2_1_33B] gi|300833633|gb|EFK64249.1| transcription termination factor NusA [Bacteroides sp. 20_3] Length = 421 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 139/412 (33%), Positives = 240/412 (58%), Gaps = 12/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D Y ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLYAKYKDKIGHIIAAEVYQVWKKEILLLDDDGNELLLPKSEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + E++SLAIG+ G N++LA LT +TID+ + E + +E Sbjct: 302 SIRVNEEEKKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYTIDVFRDIEGADEEDIYLDE 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + L G + + + +EI +E+T ++ Sbjct: 362 FSD------EIDSWVIDALKNIGCYTAKSVLAMNRNEIIERADLEEQTVDDL 407 >gi|302537260|ref|ZP_07289602.1| transcription termination factor NusA [Streptomyces sp. C] gi|302446155|gb|EFL17971.1| transcription termination factor NusA [Streptomyces sp. C] Length = 333 Score = 291 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 130/339 (38%), Positives = 194/339 (57%), Gaps = 21/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV ++ G + ++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSFRRARVVLDRTNGHVVVWAT---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPR---DLEEGQEPK---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDL 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + G++I+G V++ + NV+VD+G + ++ E + E G R+K+Y+ Sbjct: 106 TFGEFAGREGDVITGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLKTYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 +P GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D D Sbjct: 226 NPKGACIGPMGARVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDWDTRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|327542469|gb|EGF28948.1| transcription elongation factor NusA [Rhodopirellula baltica WH47] Length = 498 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 37/407 (9%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N ++L+ D++ +K+ID +++ + ++Q AA+ YG SD+ V I+ + G I+ Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIAA- 59 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +L +PL GR+ Q+AKQVIIQKVR Sbjct: 60 ----------------TLA---------------GEPLGDDQIGRIGAQTAKQVIIQKVR 88 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD LE++D++GEI+SG + R + G V+LGN + ++ R E I E+L +RV+ Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGNVEAILPRSEQIPGESLHANERVR 148 Query: 184 SYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + +++VR +V+LSRT PQF+ +LF E+PE+ +G++ +K++SR+PG R+K+AV Sbjct: 149 AIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAVS 208 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S D IDP+ CVG RGSR++AV EL E ID+V + D + NAL+PA V +V+L Sbjct: 209 SEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLLC 268 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + +GR V+V ++QLSLAIGRRGQNVRLAS+L GW I+I+T E ++ +Q Sbjct: 269 DMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELEEQIERAVGGFSQIP 328 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + E IA LV +G+ ++L+ ++ + G E I Sbjct: 329 ----GITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRI 371 >gi|332881709|ref|ZP_08449357.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680348|gb|EGJ53297.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 420 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 141/412 (34%), Positives = 231/412 (56%), Gaps = 10/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D A E K+IDR ++SV+ +S + L+G+ + V +NP+ GD Sbjct: 2 AKKAETISLIDTFAEFKETKNIDRATLVSVLEESFRSVIAKLFGSDDNYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV + E + +ISL AR D ++G VS+ + FGR A+ + +Q + Sbjct: 62 EIYRNRTVVADGEVKDDNREISLTEARRIDEDYEVGEEVSENVDFAKFGRRAILTLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E D Y ++KD+VGEI+S V + + + VD ++ ++ + E I + R Sbjct: 122 ASKILELEHDSLYNKYKDRVGEIVSAEVYQIWKKEMLCVDDEGNELILPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P+++LSRT P F+ +L EVPEI++G++ V+ ++R PG RA Sbjct: 182 KGEAVRAVVARVDNTNNNPKIILSRTSPVFLQRLLEAEVPEIHDGLITVRKIARMPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSRV +V ELR E ID++ ++ + + F+ AL PA V Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRVHGIVRELRGENIDVINYTQNISLFITRALSPAAVN 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V + E+ + EV + +Q+SLAIG+ G N++LAS LT +TID+ E E + D Sbjct: 302 SVRIHEEEHKAEVYLNPDQVSLAIGKSGLNIKLASMLTEYTIDVFREIEGAEGEGDDIYL 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++D+ I L + G +++ + S +EET E+ Sbjct: 362 DEFVG----DIDQWIIDALKSIGMETAKDVLNAPREMLVSRADLEEETVDEV 409 >gi|271963647|ref|YP_003337843.1| transcription elongation factor NusA [Streptosporangium roseum DSM 43021] gi|270506822|gb|ACZ85100.1| transcription elongation factor NusA [Streptosporangium roseum DSM 43021] Length = 331 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 124/339 (36%), Positives = 201/339 (59%), Gaps = 23/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I D+V+ + D++ A G + R E++ ++G +++F Sbjct: 1 MSVLRSLEREKDISFDLVVKAIEDALLIAYFRSEGAAAKARAELDRQSGHVTIFA----- 55 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+++ + ++ R+ D P +F R+A +AKQVI+Q++R+AE + Sbjct: 56 AEIDDESGEVL----REFDD------------TPGNFSRIAATTAKQVILQQLRDAEDEI 99 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + GE+++G +++ + V+VDLG + V+ +E + E G+R++ Y+ Sbjct: 100 NFGEFASREGELVAGVIQQGKDPRVVLVDLGKIEAVLPHNEQVPGEEYVHGERLRCYVVQ 159 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V++ +GP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S + Sbjct: 160 VKKGHKGPSVTLSRTHPGLVKKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRRPGV 219 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G GSRV+ V+ EL EKIDI+ WS D A FV NAL P+ V+ V +D + Sbjct: 220 NAKGACIGPMGSRVRNVMAELHGEKIDIIDWSEDPAEFVGNALSPSRVSHVEVIDAEGRA 279 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 280 ARVTVPDYQLSLAIGKEGQNARLANRLTGWRIDIRPDTQ 318 >gi|324992028|gb|EGC23950.1| N utilization substance protein A [Streptococcus sanguinis SK405] Length = 420 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 223/414 (53%), Gaps = 16/414 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG +E + ++GD ++ + E Sbjct: 6 EMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYTVRE 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++ + P +FGRVA QSAKQ I++K+R+ R Sbjct: 66 VVDEVFDSRLEISLKDALAISSAYELRDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ ++Y Sbjct: 126 AITYNTYKEHENEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVFVY 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +VSR+ G R K+AV S + + Sbjct: 186 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRSHNPN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 246 VDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYNAIAP 305 Query: 294 AIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ + ED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 306 AEVDQVIFNQEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFEEMEA 365 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKISEIASIEGFDEET 405 + + I D + V+ D + A + E A IE EE Sbjct: 366 ANELGGFAQEAEEILADAAVLETEVSAAEATDFDAAAEETVLETAGIESEAEEL 419 >gi|150010113|ref|YP_001304856.1| transcription elongation factor NusA [Parabacteroides distasonis ATCC 8503] gi|255012627|ref|ZP_05284753.1| transcription elongation factor NusA [Bacteroides sp. 2_1_7] gi|298374483|ref|ZP_06984441.1| transcription termination factor NusA [Bacteroides sp. 3_1_19] gi|149938537|gb|ABR45234.1| putative nitrogen utilization substance protein [Parabacteroides distasonis ATCC 8503] gi|298268851|gb|EFI10506.1| transcription termination factor NusA [Bacteroides sp. 3_1_19] Length = 421 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 139/412 (33%), Positives = 240/412 (58%), Gaps = 12/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D +A E K+ID+D ++SV+ DS + ++GT + V INPE GD Sbjct: 2 AKKEETISMIDTLAEFKELKNIDKDTMISVLEDSFRNVIAKMFGTDENYDVIINPEKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R VV +E+E+ Q++L AR D ++G V+D + DFGR A+ + +Q + Sbjct: 62 EIWRNRTVVADDELEDENLQLTLTEARKIDADCEVGEEVTDEVHFADFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E ++D Y ++KDK+G II+ V +V +++ D ++ ++ + E I + R Sbjct: 122 ASKILELQKDSLYAKYKDKIGHIIAAEVYQVWKKEILLLDDDGNELLLPKSEQIPTDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ V++ + V P++LLSRT F+ +LF +EVPEI +G++ +KA++R PG RA Sbjct: 182 KGETVRAIVQRVDNYNNNPKILLSRTDKVFLQRLFELEVPEINDGLITIKAIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KVAVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTSNLSLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + ++E+ + EV + E++SLAIG+ G N++LA LT +TID+ + E + +E Sbjct: 302 SIRVNEEEKKAEVYLRPEEVSLAIGKGGLNIKLACMLTEYTIDVFRDIEGADEEDIYLDE 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + L G + + + +EI +E+T ++ Sbjct: 362 FSD------EIDSWVIDALKNIGCYTAKSVLAMDRNEIIERADLEEQTVDDL 407 >gi|297562526|ref|YP_003681500.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846974|gb|ADH68994.1| NusA antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 337 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 133/348 (38%), Positives = 198/348 (56%), Gaps = 26/348 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I ++V + D++ A G RVE+N TG ++++ V Sbjct: 1 MSVLRSLEREKDISVELVAKAIEDALLIAYHREEGPEKRARVELNRSTGHVTVW----VA 56 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E E+ G V P FGR+A +AKQVI+Q++R+AE + Sbjct: 57 ETDED-------------------GESVGEFDGTPTGFGRIATSTAKQVILQRLRDAEDE 97 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 EF + +I+SG +++ + NV+VDLG + V+ E + E G+R+++Y+ Sbjct: 98 LTLGEFAGREHDIVSGIIQQGKDPRNVLVDLGKIEAVLPPQEQVPTETYTHGERLRAYVV 157 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+ RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ Sbjct: 158 QVRKGHRGPSVTLSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVHSNRGG 217 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 ++ GAC+G GSRV+ V+ EL EKIDIV +S D A FV NAL PA V V + D Sbjct: 218 VNAKGACIGPLGSRVRNVMAELHGEKIDIVDYSEDPAVFVANALSPARVNSVEILDMASR 277 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 VIVP Q SLAIG+ GQN RLA++LTGW IDI ++ E + +++ Sbjct: 278 VARVIVPDYQQSLAIGKEGQNARLAARLTGWRIDIRSDAEPAGEPERE 325 >gi|160913530|ref|ZP_02076221.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991] gi|158434082|gb|EDP12371.1| hypothetical protein EUBDOL_00006 [Eubacterium dolichum DSM 3991] Length = 548 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 145/435 (33%), Positives = 248/435 (57%), Gaps = 3/435 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 + + A+ ++ + +++V+ + +++ KA R + +RV ++ E G+I +F+ Sbjct: 5 DFMTAMQAIESDRQLSKEIVVDALQEALSKAFRKHIEIPDALVRVAVDDENGEIKVFQQR 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 VVE VE+ +ISL A+ + ++++G VV + + DFGR AV AK V+ QK+REAE Sbjct: 65 AVVETVEDDELEISLNDAKRINEALELGDVVEEEVNIADFGRAAVILAKNVMKQKIREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y E+ DKV E+I GTV+ VE +V++G + ++ +++ I E R G ++ I Sbjct: 125 KLAVYEEYCDKVEEMIFGTVESVEEKFCVVNIGKTLAIMPKNQQIPNETYREGSMIRVVI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +E +G QVL+SR + +LF EVPEIY GI+++KA++R+ G R K+AV+S + Sbjct: 185 SEVNKETKGAQVLVSRADATLVKRLFEKEVPEIYQGIIEIKAIAREAGERTKMAVYSHNE 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDP+GAC+G RG+RVQ ++ EL+ EKIDI WS D + + NAL PA V V+ +E Sbjct: 245 NIDPIGACIGPRGTRVQVIIDELKGEKIDIFEWSDDVSELIKNALSPAEVLAVIPNEARK 304 Query: 307 R-IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+VP QLSLAIG+RG+N RLA +LTG IDI +E + + + ++ + Sbjct: 305 DGLLVVVPDNQLSLAIGKRGKNARLAVKLTGHKIDIKSESDINEMGIDWKDAAMRYRAEY 364 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEI-ASIEGFDEETAVEIQGRAREYLEGIDITL 424 + + E F ++E + + + + + E E++ A ++ + Sbjct: 365 LAKQQAEKEAAQQERFEQMKEEEALTLDDAGVAFDESVYEEETELEEEAVSETSKVEAPI 424 Query: 425 QKKIRELGVSEELCS 439 ++ E +L Sbjct: 425 VEEAMEEKQESDLEE 439 >gi|305665253|ref|YP_003861540.1| transcription elongation factor NusA [Maribacter sp. HTCC2170] gi|88710006|gb|EAR02238.1| transcription elongation factor NusA [Maribacter sp. HTCC2170] Length = 410 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 133/419 (31%), Positives = 230/419 (54%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ D + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEDVFRNALKKKFGSDENFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE +ISL A+ +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRIVVEDGEVEEPNEEISLSEAQKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + VI+ D ++ ++ +D I + R GD Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHKAVILLDDEGNEIILPKDRQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SR+ P+F+ +LF E+PE+++G++ +K R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPSIIMSRSSPRFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLLVTRALSPARVSSVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L+++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 301 LNDEKMTAQVYLRPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D I G + + ++ +EET E+ +E LE Sbjct: 358 ------EIDAWIIEEFKKIGMDTARSVLEQDVDDLVKRTDLEEETISEVVRILKEELED 410 >gi|284030871|ref|YP_003380802.1| NusA antitermination factor [Kribbella flavida DSM 17836] gi|283810164|gb|ADB32003.1| NusA antitermination factor [Kribbella flavida DSM 17836] Length = 330 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 131/346 (37%), Positives = 201/346 (58%), Gaps = 24/346 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ EK I +VV+ + ++ A G R E++ +TG +++F Sbjct: 5 MAVLRSLEREKDIAFEVVVEAIEQALLVAYHRTEGAQQHARAELDRKTGHVTVF------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ P + V P DFGR+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AREMGPDGTL--VREYDDTPADFGRIAATTAKQVILQRLRDAEDEV 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Y EF K G+I+SG V++ + +V+VDLG + V+ E + E G R++ Y+ Sbjct: 103 RYGEFSGKEGDIVSGVVQQGRDPRSVMVDLGKIEAVLPGPEQVPGEKYEHGSRLRVYVVG 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ +GPQ+ +SRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV + + S+ Sbjct: 163 VRKGFKGPQITVSRTHPNLVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRTLNPSV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ ++ EL EKIDI+ S D ATFV NAL PA V+ V +D Sbjct: 223 NGKGACIGPMGQRVRNIMHELHGEKIDIIDHSDDPATFVGNALSPAQVSSVEVVDAAARA 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + +K Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTDVTRGDEK 328 >gi|302554522|ref|ZP_07306864.1| transcription termination factor NusA [Streptomyces viridochromogenes DSM 40736] gi|302472140|gb|EFL35233.1| transcription termination factor NusA [Streptomyces viridochromogenes DSM 40736] Length = 340 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 132/352 (37%), Positives = 199/352 (56%), Gaps = 21/352 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P FGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPDDLEEGQEAREFDD------------TPTGFGRIAATTAKQVILQRLRDAEDDA 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 106 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGETYGHGMRLRSYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV + D Sbjct: 226 NAKGACIGPVGGRVRNVMGELNGEKIDIVDWSEDPAEMVANALSPARVSKVEIVDMATRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + + + + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAGEQSGERSGQR 337 >gi|258652414|ref|YP_003201570.1| transcription elongation factor NusA [Nakamurella multipartita DSM 44233] gi|258555639|gb|ACV78581.1| NusA antitermination factor [Nakamurella multipartita DSM 44233] Length = 336 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 129/348 (37%), Positives = 196/348 (56%), Gaps = 31/348 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + AV EK ID + ++ + ++ A R G RV+I+ +TG I ++ Sbjct: 5 IAALRAVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D S +I V P DFGR+A +A+QVI+Q++R+ + +R Sbjct: 59 --------------AQETDDSGEI--VREWDDTPEDFGRIAATTARQVILQRLRDVDNER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 + +F + ++I+GT+ N V+V LG +G+I E + E+ G R Sbjct: 103 TFGDFAGREHDLITGTISADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVSVARGLRGPQITLSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 + + ++ GAC+G G+RV+AV++EL EKIDI+ + D ATFV NAL PA Sbjct: 223 RPAVAGVNAKGACIGPMGARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 IDPVAKAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPD 330 >gi|254382096|ref|ZP_04997458.1| transcription elongation factor NusA [Streptomyces sp. Mg1] gi|194341003|gb|EDX21969.1| transcription elongation factor NusA [Streptomyces sp. Mg1] Length = 336 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 129/342 (37%), Positives = 196/342 (57%), Gaps = 21/342 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV ++ G + ++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSFRRARVVLDRTNGHVVVWAT---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ ++ P DFGR+A +AKQVI+Q++R+AE D Sbjct: 61 ---EDPR---DLEEGQEPK---------EFDDTPSDFGRIAATTAKQVILQRLRDAEDDL 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF + G++I+G V++ + NV+VD+G + ++ E + E+ G R+K+Y+ Sbjct: 106 TFGEFAGREGDVITGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEDYTHGLRLKTYVVR 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ + + Sbjct: 166 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEICAIAREAGHRTKIAVRSTRAGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 +P GAC+G G+RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D D Sbjct: 226 NPKGACIGPMGARVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDWDTRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 286 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPAE 327 >gi|311898673|dbj|BAJ31081.1| putative transcription elongation protein NusA [Kitasatospora setae KM-6054] Length = 333 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 130/339 (38%), Positives = 196/339 (57%), Gaps = 21/339 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK + D+++ + ++ A G+ RVE+N +TG ++++ Sbjct: 5 MSALRGLVTEKGVPFDLLVESIESALLIAYHRTEGSRRRARVELNRKTGHVTVWA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 L+ A + D ++ P FGR+A +AKQVI+Q++R+A D+ Sbjct: 60 -----------LEDASELDEGVEPKEF---DDTPSGFGRIAASTAKQVILQRLRDAADDQ 105 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ K G+I++G V++ + +V+VD+G + ++ E + E+ R G R+K Y+ Sbjct: 106 TFGEYAGKEGDIVTGVVQQGNDPKSVLVDIGKLEAILPPQEQVPGEDYRHGTRLKCYVVG 165 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR RGP V LSRTHP + +LF +EVPEI +G V++ A++R+ G R K+AV+S + Sbjct: 166 VRRGVRGPSVTLSRTHPSLVKRLFALEVPEIADGSVEIAAIAREAGHRTKIAVWSRRQGL 225 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V AL PA VTKV + D Sbjct: 226 NAKGACIGPNGMRVRGVMAELHGEKIDIVDWSEDPAEMVAAALSPARVTKVEIVDLAQRS 285 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 286 ARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTE 324 >gi|212550409|ref|YP_002308726.1| transcription elongation factor NusA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548647|dbj|BAG83315.1| transcription elongation factor NusA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 417 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 131/415 (31%), Positives = 226/415 (54%), Gaps = 13/415 (3%) Query: 12 IADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + +A A K+IDR ++SV+ ++ + A ++G+ + + +NP+ GD ++R EV Sbjct: 10 MIEAFANFKSNKNIDRTTLISVLEETFRNAINKMFGSDKNYNIIVNPDKGDFEIWRNREV 69 Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + +EN QI+L AR DP + G +SD + FGR V + +Q++ K+ E + Sbjct: 70 VPDDKLENPNLQITLSEARKIDPDYESGEEISDAVNFSSFGRRTVLNLRQILTSKILELQ 129 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSY 185 + Y ++KDK+G I++G V ++ +++ D ++ ++ + E I + R + ++ Sbjct: 130 NNSLYNKYKDKIGHIVTGEVYQIWKKEILLLDDEGNELILPKSEQIPNDFFRKNESCRAV 189 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V P+++LSRT FM +LF +EVPEI +G++ +K ++R PG RAK+AV S + Sbjct: 190 VLRVDNNYSNPKIILSRTSNSFMQQLFELEVPEIQDGLITIKHIARIPGERAKIAVESYN 249 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDP+G CVGM+G R+ +V ELR+E IDI+ ++ + + F+ AL PA ++ + + E Sbjct: 250 ERIDPIGTCVGMKGMRIHGIVRELRNENIDIINYTSNISLFIQRALSPAKISSIKIHEKE 309 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIG+ G N++LAS LTG+TID+ E E+ Sbjct: 310 KKAEVFLRPEEVSLAIGKSGLNIKLASILTGYTIDVFREGENDDEDIY-------LDEFK 362 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 ++E I L G + + EI +E T EI + E Sbjct: 363 DEIEEWIIEALKNIGCYTAKSVLTKNKEEIVRQTDLEENTVDEILKILKTEFEEE 417 >gi|260654723|ref|ZP_05860211.1| transcription termination factor NusA [Jonquetella anthropi E3_33 E1] gi|260630438|gb|EEX48632.1| transcription termination factor NusA [Jonquetella anthropi E3_33 E1] Length = 358 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 131/349 (37%), Positives = 221/349 (63%), Gaps = 5/349 (1%) Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66 L+ ++ ++A E ++ DV+++ + ++ A R ++ V +N ETG++ ++ + Sbjct: 5 LDCIRALKSLAEESNLSEDVIVASLEAALGAAYRKYREGTTEPEVHLNRETGEVEIYDVR 64 Query: 67 EVVEEVENYTCQISLKVARDR-DPSIDIGGVVSDPL--PPMDFGRVAVQSAKQVIIQKVR 123 E T +I+ A + G +V P+ P FGR+A Q+A+QVIIQ+++ Sbjct: 65 RTTENPVAGTSEITQAEAAQMGYSDVQPGDLVRVPVYVHPEKFGRIAAQTARQVIIQRLK 124 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRV 182 +AER+ + EF +K+G+++ G V R E V++ +G S+ +++R+E I E G R+ Sbjct: 125 DAEREVVFNEFSEKIGDLVLGEVIRSENDQVLIHIGERSEALLQREERIPNEKYDIGMRL 184 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + ++ DVR+ RGP+++LSRTHP + +L +E+PEI +G V++K + R+ G+RAK+AV Sbjct: 185 RFFLLDVRQTTRGPRIVLSRTHPGLLRRLMELEIPEIADGTVEIKGIVREAGARAKVAVA 244 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++D S+DP+GACVG G+R++++ +EL +EKIDIV+W D T+V N+L PA K+ L Sbjct: 245 TTDPSVDPLGACVGASGARIRSISSELCEEKIDIVLWDEDPLTYVKNSLSPATPVKIELV 304 Query: 303 ED-VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 D + V V +QLSLAIG+ GQNVRLA++LTGW +DI + E+ Sbjct: 305 PDAERSVRVFVKPDQLSLAIGKTGQNVRLAARLTGWKLDIQSSEKLDEP 353 >gi|256824991|ref|YP_003148951.1| transcription termination factor NusA [Kytococcus sedentarius DSM 20547] gi|256688384|gb|ACV06186.1| transcription termination factor NusA [Kytococcus sedentarius DSM 20547] Length = 357 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 116/342 (33%), Positives = 193/342 (56%), Gaps = 18/342 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + V E+ I DV++ + ++ +A + G + RVE++ +G + ++ Sbjct: 5 MAVLREVEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ L+ + + P DFGR+ + +QVI Q++R+ E + Sbjct: 61 ---EDAPV---LEDGTRGEAGPEFDDT------PEDFGRIGAFTVRQVIRQRLRDLEDEA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK K G+I++G +++ + + VDLG +G++ E + E+ + GDR++ Y+ Sbjct: 109 VLGDFKGKEGDIVAGVIQQSNDPHAIHVDLGTVEGLLGTSEQVPLEDYKHGDRIRCYVIH 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 +R +GP + LSRTHP + KLF +EVPE+ +G V++++++R+ G R+K+AV ++ + Sbjct: 169 AKRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVRATQPGV 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + G+C+G G RV+AV+ EL+ EKIDIV + D FV AL PA VT V +DE Sbjct: 229 NAKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVVDEKTRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 289 ARVTVPAHQLSLAIGKEGQNARLAARLTGWRIDIQPDHTADE 330 >gi|225011158|ref|ZP_03701620.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C] gi|225004720|gb|EEG42680.1| NusA antitermination factor [Flavobacteria bacterium MS024-3C] Length = 410 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 131/418 (31%), Positives = 233/418 (55%), Gaps = 15/418 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ + + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEEVFRSALKKKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ V + +IS+ AR +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRVVVEDIDVMDPNEEISITEARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + +I+ D ++ ++ +D+ I + R GD Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHQAIILLDDEGNEIILPKDKQIPADFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PE+++G++ +K R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPSIIMSRTSPLFLEQLFFQEIPEVFDGLITIKKAVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVKELGNENIDVINWTNNPTLLVTRALSPARVSSVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LD++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ + Sbjct: 301 LDDEKMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ L G + + ++A +EET +++ +E LE Sbjct: 361 AWI---------IAELSKIGLDTARAVLEQDVEDLAKRTDLEEETILDVVRILKEELE 409 >gi|311744143|ref|ZP_07717949.1| transcription termination factor NusA [Aeromicrobium marinum DSM 15272] gi|311313273|gb|EFQ83184.1| transcription termination factor NusA [Aeromicrobium marinum DSM 15272] Length = 332 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 126/340 (37%), Positives = 193/340 (56%), Gaps = 18/340 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR--LLE 67 + A+ EK + DVV+ + ++ A RVE++ + G + ++ L Sbjct: 5 MNALRALEREKDLSFDVVVEAIEQALLSAYHKTPDAHGHARVELDRKNGHVVVWAAERLP 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E + P DFGR A A+QVI+Q++REAE Sbjct: 65 VEPTEEQPHPPAAWSE--------------EFDDTPEDFGRFAAAIARQVIMQRLREAED 110 Query: 128 DRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 +++Y EF +VG+I+SG +++ G+V++DLG + ++ E ++ E G+R+K+Y+ Sbjct: 111 EQKYGEFSGRVGDIVSGVIQQGRSPGDVMIDLGRVEAILPSAERVAEEKYAHGERIKAYV 170 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 Y+V + RGP+V +SRTHP + LF +EVPEI + V++ AV+R+ G R K+AV + Sbjct: 171 YEVEKGLRGPRVKVSRTHPNLVRLLFALEVPEIADHSVEIVAVAREAGHRTKIAVRARVP 230 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDV 305 ++ GAC+G G+RV+ V+ EL EKIDIV S D A F+ AL P+ VT V +DE Sbjct: 231 GVNAKGACIGPLGARVRNVMHELHGEKIDIVDHSDDPAEFIGYALSPSRVTSVTVVDEAT 290 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 291 RSARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDT 330 >gi|15902522|ref|NP_358072.1| transcription elongation factor NusA [Streptococcus pneumoniae R6] gi|15458048|gb|AAK99282.1| Transcription termination [Streptococcus pneumoniae R6] Length = 378 Score = 289 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 209/360 (58%), Gaps = 15/360 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N +TGD +++ + E Sbjct: 4 EMLEAFRILEEDKRIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEKTGDFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+E + +ISLK A + + ++G + P +FGRVA QSAKQ I++K+R+ R Sbjct: 64 VVDEAFDSRLEISLKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y +K+ EI+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y Sbjct: 124 AITYNTYKEHEQEIMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V RG V +SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + + Sbjct: 184 KVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG G+ ++ + ++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGANIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAP 303 Query: 294 AIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V +V+ DE D R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDQVIFDESDSKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 363 >gi|309775437|ref|ZP_07670440.1| N utilization substance protein A [Erysipelotrichaceae bacterium 3_1_53] gi|308916826|gb|EFP62563.1| N utilization substance protein A [Erysipelotrichaceae bacterium 3_1_53] Length = 565 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 145/426 (34%), Positives = 241/426 (56%), Gaps = 5/426 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 + + A+ ++ + ++VV+ + +++ KA R + +RV++N ++GDI +++ Sbjct: 5 DFMAAMQAIETDRKLSKEVVVDALQEALAKAFRKHIEIPDALVRVDVNEKSGDIKVYQQR 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VE VE+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REAE Sbjct: 65 LIVENVEDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ I Sbjct: 125 KLVVYEEYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVVI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +E +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S + Sbjct: 185 TEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHNE 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDP+GAC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ E+ Sbjct: 245 NIDPIGACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEERK 304 Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+VP QLSLAIG+RG+N RLA +LTG IDI E + + + + Sbjct: 305 GGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAETDVNAAGINWKEIAMKQREEF 364 Query: 366 INVDEIIAHLLVAEGF---ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + + E F A +E + + ++ E +E E Q E I Sbjct: 365 LARQQEAKEAAQMERFEENAQPQEAVSLDDAGVSFQEVVTDEEVSEPQTAVDAVAEEIPA 424 Query: 423 TLQKKI 428 ++I Sbjct: 425 EAVEEI 430 >gi|189465081|ref|ZP_03013866.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM 17393] gi|189437355|gb|EDV06340.1| hypothetical protein BACINT_01425 [Bacteroides intestinalis DSM 17393] Length = 440 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 136/412 (33%), Positives = 240/412 (58%), Gaps = 11/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGNIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + + Sbjct: 302 SIRLNEEERKAEVFLRPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEV 408 >gi|329954143|ref|ZP_08295238.1| transcription termination factor NusA [Bacteroides clarus YIT 12056] gi|328528120|gb|EGF55100.1| transcription termination factor NusA [Bacteroides clarus YIT 12056] Length = 421 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 139/424 (32%), Positives = 242/424 (57%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QISL AR D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ + Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EEEN 420 >gi|332830404|gb|EGK03032.1| transcription termination factor NusA [Dysgonomonas gadei ATCC BAA-286] Length = 420 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 142/423 (33%), Positives = 242/423 (57%), Gaps = 12/423 (2%) Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E++ + D + E K+IDR ++SV+ DS + L+G+ + V INP+ GD+ + Sbjct: 3 KKEVISMIDTFSEFKELKNIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEI 62 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R +VE+ +E+ QISL AR D ++G V+D + DFGR A+ + +Q + Sbjct: 63 WRNRTIVEDSELEDENTQISLTEARKIDEDFEVGEDVTDEVFFEDFGRRAILNLRQTLTS 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPG 179 K+ E +++ Y +K+K+GEI+SG V ++ +++ D + ++ + E I + R G Sbjct: 123 KILELQKEGLYNRYKEKIGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + V++ + V + P+++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+ Sbjct: 183 EHVRAVVERVENKNNNPKIILSRTSPVFLERLLEIEVPEINDGLITIKNIARIPGERAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++P+ + ++ AL PA +T V Sbjct: 243 AVESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDIINYTPNMSLYIQRALSPAKITSV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 L+E+ R EV++ E++SLAIG+ G N++LAS LTG+TID+ + +D +E Sbjct: 303 KLNEEEKRAEVLLRPEEVSLAIGKGGFNIKLASMLTGYTIDVYRDIDDFDEEDIYLDEFR 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D + L G + + ++ +E+T EI R + Sbjct: 363 D------EIDGWVIDQLKKIGCVTAKNVLAADRDKLIQEADLEEDTVDEILDILRAEFDD 416 Query: 420 IDI 422 Sbjct: 417 ESK 419 >gi|167764123|ref|ZP_02436250.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC 43183] gi|167698239|gb|EDS14818.1| hypothetical protein BACSTE_02506 [Bacteroides stercoris ATCC 43183] Length = 421 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 138/412 (33%), Positives = 239/412 (58%), Gaps = 11/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QISL AR D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQISLSEARKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEV 408 >gi|315302978|ref|ZP_07873697.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] gi|313628646|gb|EFR97060.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] Length = 312 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 134/311 (43%), Positives = 198/311 (63%) Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 E VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VRE Sbjct: 1 RKEAVEQVFDSRLEISMEEAHKINPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVRE 60 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 AER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Sbjct: 61 AERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKV 120 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V+++ Sbjct: 121 YLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTA 180 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 181 NEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEA 240 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N ++ Sbjct: 241 DQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNNEDVTPVE 300 Query: 365 AINVDEIIAHL 375 + Sbjct: 301 EAESETFTEDE 311 >gi|312139328|ref|YP_004006664.1| transcriptional termination/antitermination factor nusa [Rhodococcus equi 103S] gi|325676662|ref|ZP_08156337.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] gi|311888667|emb|CBH47979.1| transcriptional termination/antitermination factor NusA [Rhodococcus equi 103S] gi|325552517|gb|EGD22204.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] Length = 343 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 127/347 (36%), Positives = 195/347 (56%), Gaps = 30/347 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I +++ + ++ A R G R++++ ++G + + Sbjct: 5 IAALRAIEADKGISAGTIIAAIETALLTAYRHTEGHQPHARIDVDTKSGVVRVMAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +V++ Q +G D P FGR+A +A+QVI+Q++R+AE +R Sbjct: 61 -DVDSDGNQ--------------VGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHER 103 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 + EF GEI+ G ++R N V+V +G ++G+I E + E GDR Sbjct: 104 SFGEFATHEGEIVGGVIQRDTRANARGMVVVRIGSEANGAEGLIPPAEQVPGETYEHGDR 163 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 164 IKCYVVGVSRGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIVAVARESGHRSKIAV 223 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V Sbjct: 224 HSRVPGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDYDEDPAKFVGNALSPSKVVSVTV 283 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VDPEARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAP 330 >gi|25010487|ref|NP_734882.1| transcription elongation factor NusA [Streptococcus agalactiae NEM316] gi|76788260|ref|YP_329098.1| transcription elongation factor NusA [Streptococcus agalactiae A909] gi|161485616|ref|NP_687412.2| transcription elongation factor NusA [Streptococcus agalactiae 2603V/R] gi|23094840|emb|CAD46058.1| Unknown [Streptococcus agalactiae NEM316] gi|76563317|gb|ABA45901.1| transcription termination factor NusA [Streptococcus agalactiae A909] Length = 383 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 212/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + E Sbjct: 4 EMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 124 EVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVY 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S+ Sbjct: 184 KVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSN 243 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V++ E ID++ W D A F+ NA+ P Sbjct: 244 VDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAP 303 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 304 AEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEA 363 Query: 353 KDFNERTQFFMQAINVDE 370 ++ + D+ Sbjct: 364 QELQTEEVAQESEVISDK 381 >gi|257452235|ref|ZP_05617534.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] gi|317058778|ref|ZP_07923263.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] gi|313684454|gb|EFS21289.1| transcription elongation factor NusA [Fusobacterium sp. 3_1_5R] Length = 353 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 210/344 (61%), Gaps = 3/344 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + + L+ D + EK I+++ +L + ++ A + YG ++ V I+ E GD+ Sbjct: 1 MTNKDARAFLEALDELEKEKGIEKESLLQAVEQALLTAYKKNYGDEENVEVVIDRENGDV 60 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++ + +VV E++ + +ISL+ A+ +G V + F R A+Q+ KQ++ Sbjct: 61 KVYEVKKVVTEEDLYDAALEISLEEAKKISRRAKLGEEVRIEVDCESFRRNAIQNGKQIV 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 IQKVREAER+ Y FK + GEI++G ++R E NV ++ G + ++ E + + Sbjct: 121 IQKVREAERENIYDRFKAQEGEILTGIIRRIDERKNVFIEFGGIETILTAGEQCVSDRYK 180 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+R+K Y+ +V + + P++++SR H + KLF +E+PEI +G +++KAV+R+ GSRA Sbjct: 181 VGNRIKVYLVEVEKTNKFPKIVISRRHEGLLRKLFELEIPEISSGAIEIKAVAREAGSRA 240 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV+S +ID VGAC+G + +R++ +V EL EKIDIV+W + FV L PA V Sbjct: 241 KVAVYSELPNIDIVGACIGQKRARIKNIVDELGGEKIDIVIWKENMEEFVSAVLSPAKVN 300 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V L ED V+V + QLSLAIG+ GQN RLA++LTG +DI Sbjct: 301 SVELLEDGETARVLVDESQLSLAIGKSGQNARLAAKLTGMRVDI 344 >gi|295836231|ref|ZP_06823164.1| transcription termination factor NusA [Streptomyces sp. SPB74] gi|295825916|gb|EFG64550.1| transcription termination factor NusA [Streptomyces sp. SPB74] Length = 365 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 126/340 (37%), Positives = 192/340 (56%), Gaps = 18/340 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ V Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW----VK 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + AR+ D P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 61 EDEADLADLGEGARAREFDD------------TPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPAELVAHALSPARVSHVEVVDLATRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTET 328 >gi|150024572|ref|YP_001295398.1| transcription elongation factor NusA [Flavobacterium psychrophilum JIP02/86] gi|149771113|emb|CAL42580.1| Transcription elongation protein NusA [Flavobacterium psychrophilum JIP02/86] Length = 413 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 133/419 (31%), Positives = 239/419 (57%), Gaps = 12/419 (2%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +KSIDR +++++ D + A + YG+ + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKSIDRPTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60 Query: 64 RLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + +V +++ +I+L AR +P +IG VS+ + +D GR A+ + +Q +I K Sbjct: 61 QRRVIVADDDLDLDHLEITLTDARKIEPDFEIGEEVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD +G+I +G V V VI VD ++ ++ +++ I + R GD Sbjct: 121 IHEHDNTNLYKQFKDLIGDIYTGEVHHVRPRVVILVDDEGNEIILPKEKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPQIIMSRTSEKFLEKLFEQEIPEVFDGLIMVKNVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNTQLYITRALSPAKVSSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ R EV + E++S AIGR G N++LA QLTG+ +D+I E + + + E + Sbjct: 301 INEETKRAEVFLKLEEVSKAIGRGGHNIKLAGQLTGYELDVIREGTVAADDDVELTEFSD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ + G + + ++++ +EET +E+ +E E Sbjct: 361 ------EIEAWVIEEFAKIGLDTAKSILSQDVNDLVRRTDLEEETILEVVKILKEEFEE 413 >gi|224536664|ref|ZP_03677203.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus DSM 14838] gi|224521755|gb|EEF90860.1| hypothetical protein BACCELL_01540 [Bacteroides cellulosilyticus DSM 14838] Length = 446 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 135/412 (32%), Positives = 240/412 (58%), Gaps = 11/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGNIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + + Sbjct: 302 SIRLNEEERKAEVFLRPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + + + G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKSIGIDTAKAVLNAPRELLIEKTDLEEETVDEV 408 >gi|318062643|ref|ZP_07981364.1| transcription elongation factor NusA [Streptomyces sp. SA3_actG] Length = 367 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 18/350 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ + E Sbjct: 1 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-VKEEA 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++ + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 ADLADLG-----EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 105 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 165 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D Sbjct: 225 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDEDGNATEN 334 >gi|293400740|ref|ZP_06644885.1| N utilization substance protein A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305766|gb|EFE47010.1| N utilization substance protein A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 559 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 137/389 (35%), Positives = 227/389 (58%), Gaps = 2/389 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 + + A+ ++ + ++VV+ + +++ KA R + +RV++N +TG+I +++ Sbjct: 5 DFMAAMQAIESDRKLPQEVVVEALQEALAKAFRKHIEIPDALVRVDVNEKTGNIKVYQQR 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VE VE+ +ISL+ A+ + +++ GVV + + GR AV AK V+ QK+REAE Sbjct: 65 TIVETVEDDELEISLEDAKKINQELELDGVVEEEVDITQLGRAAVILAKNVMKQKIREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y E+ DKV E++ GT++ VE IV++G + ++ +++ I E GDR++ I Sbjct: 125 KLIVYEEYCDKVDEMVVGTIESVEEKFCIVNIGKTLALMPKNQQIPNERYHEGDRIRVVI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +E +G QVL+SR + +LF EVPEI+ G++++KA++R+ G R K+AV+S + Sbjct: 185 IEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGVIEIKAIAREAGERTKMAVYSHNE 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDP+GAC+G RG RVQ ++ EL EKIDI WS D A + NAL PA V V+ E+ Sbjct: 245 NIDPIGACIGPRGQRVQVIINELGGEKIDIFEWSEDVAELIKNALSPAEVLAVIPSEERK 304 Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+VP QLSLAIG+RG+N RLA +LTG IDI E + + + Sbjct: 305 GGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAESDVDAAGIDWKGIAMKQREEF 364 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISE 394 + L E F + + +++ Sbjct: 365 LAAQAAAKALAQQERFEEAASEEAISLAD 393 >gi|224025208|ref|ZP_03643574.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM 18228] gi|224018444|gb|EEF76442.1| hypothetical protein BACCOPRO_01942 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 137/422 (32%), Positives = 237/422 (56%), Gaps = 11/422 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTLVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL AR D S +IG V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNSQISLSQARQIDASYEIGEEVTDEVIFEKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG +IS V ++ +++ D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSLYNKYIDKVGTVISAEVYQIWKKEILLLDDEGNELLLPKTEQIPGDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V P+++LSRT P F+ +LF EVPEI +G++ ++ ++R PG RA Sbjct: 182 KGETARAVVARVDNPGNNPKIILSRTSPMFLQRLFEQEVPEIADGLITIRRIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +V+ ED + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S + + + Sbjct: 302 SIVMHEDEKKAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYRELDESATDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +DE + + + G + + + +E T ++ + Sbjct: 362 EFKD-----EIDEWVINAIKGIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILKAEF 416 Query: 418 EG 419 E Sbjct: 417 EA 418 >gi|260060676|ref|YP_003193756.1| transcription elongation factor NusA [Robiginitalea biformata HTCC2501] gi|88784806|gb|EAR15975.1| transcription elongation factor NusA [Robiginitalea biformata HTCC2501] Length = 410 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 131/419 (31%), Positives = 233/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + ++ + +K IDR +++++ + + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENLALIESFSEFKDDKFIDRVTLMAILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K Sbjct: 61 RNRVVVPDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLIAK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + +I +D ++ ++ +++ I + R GD Sbjct: 121 IHEHDNTTIYKQFKDLEGEIYTAEVHHIRHKAIILLDDEGNELIMPKEKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P+F+ +LFH E+PE+++G++ +K R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPLIIMSRTSPKFLEQLFHQEIPEVFDGLITIKKAVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V +L PA VT+V Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTNNPQLMVTRSLSPARVTQVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L+++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F + Sbjct: 301 LNDENMTAQVYLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFRD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++E I L G + + ++ +EET +++ +E E Sbjct: 358 ------EIEEWIIMELRKIGLDTARAVLEQDVEDLVKRTDLEEETILDVIRILKEEFED 410 >gi|312134896|ref|YP_004002234.1| transcription termination factor nusa [Caldicellulosiruptor owensensis OL] gi|311774947|gb|ADQ04434.1| transcription termination factor NusA [Caldicellulosiruptor owensensis OL] Length = 353 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 127/343 (37%), Positives = 200/343 (58%), Gaps = 9/343 (2%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM----SDIRVEINPETG 58 + + EL D + E I++D V SV+ ++ A + + G S+++V I+PE G Sbjct: 7 TLDFQELFSAIDELEREYKIEKDYVYSVLESALLTAYKQVKGIKDKNLSNVKVSIDPEKG 66 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 + ++ +VVE V++ +I L+ A+ D IG +V+ +P F R A + +Q + Sbjct: 67 SVKIYEYKKVVENVKDKKSEILLEDAQKIDKRYKIGDIVAIEVPISQFSRKAAMTVRQTV 126 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENL 176 I K+RE R + ++ KV I++G ++R++ NVIV++ G + ++ +E I E Sbjct: 127 IGKIREKRRSIIFEDYSSKVDNIVTGVIQRIDKKNVIVEIEGGKVEAILPMEEQIPGEEY 186 Query: 177 RPGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 +PG +K YI +V+ + + V LSRTHP + +L EVPEI GI+++KA++R+ G Sbjct: 187 KPGVMMKFYITEVKIPPKEKEPIVYLSRTHPNLIKRLMENEVPEIQEGIIEIKAIAREAG 246 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SR+K+AV+S+ +DPVGAC+G +G R+Q V+ L EKIDIV WS D F+ NAL PA Sbjct: 247 SRSKVAVYSNSLKVDPVGACIGEKGIRIQNVLKHLNGEKIDIVKWSSDIGEFIKNALSPA 306 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 V + L+ + V+VP QLSLAIGR G R A T W Sbjct: 307 EVVHIDLNLIEKKAFVLVPNSQLSLAIGRGGTE-RSACSKTDW 348 >gi|313205355|ref|YP_004044012.1| nusa antitermination factor [Paludibacter propionicigenes WB4] gi|312444671|gb|ADQ81027.1| NusA antitermination factor [Paludibacter propionicigenes WB4] Length = 421 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 232/410 (56%), Gaps = 11/410 (2%) Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E + + D + E KSIDR ++SVM +S + L+GT + V INP+ GD + Sbjct: 3 KKETISLIDTFSEFKELKSIDRSTLISVMEESFRNVISKLFGTDENYDVIINPDKGDFEI 62 Query: 63 FRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV E++ + QISL A+ D +I V+D + + FGR A+ + +Q + Sbjct: 63 YRNRTVVADEDLTDPNLQISLTEAKKIDEDYEIDEDVTDTVDFLSFGRRAILTLRQTLSS 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+ E ++D + ++ +KVG+I+S + + + +++D ++ + + E I + R G Sbjct: 123 KILELQKDNVFSKYSEKVGQIVSAELYQIWKKEMLLIDDEGNELYLPKTEQIPTDFYRKG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D V++ + V + P+++LSR P F+ +LF +EVPEI+ G++ +K ++R PG RAK+ Sbjct: 183 DTVRAVVAMVENKNNNPKIILSRISPVFLERLFELEVPEIHEGLITIKKIARIPGERAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ + Sbjct: 243 AVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTNNVNLFISRALSPAKISSI 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 L+E + E+ + E++S AIG+ G N++LA L+G+T+D+ E + +E Sbjct: 303 RLNEAEKKAEIYLKPEEVSQAIGKGGLNIKLAGMLSGYTLDVFRE-----MDEDTESEDI 357 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D+ + L A G + + + ++ +EET E+ Sbjct: 358 YLDEFSDEIDQWVIDALKAIGCDTAKSVLAISRQDLVRRTDLEEETIDEV 407 >gi|218131824|ref|ZP_03460628.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697] gi|317474560|ref|ZP_07933834.1| transcription termination factor NusA [Bacteroides eggerthii 1_2_48FAA] gi|217986127|gb|EEC52466.1| hypothetical protein BACEGG_03445 [Bacteroides eggerthii DSM 20697] gi|316909241|gb|EFV30921.1| transcription termination factor NusA [Bacteroides eggerthii 1_2_48FAA] Length = 422 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 137/424 (32%), Positives = 241/424 (56%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV + +EN QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADKDLENPNLQISLSEAQKIDASYEVGEEVTDEVNFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ + Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EEEE 420 >gi|163753871|ref|ZP_02160994.1| transcription elongation factor NusA [Kordia algicida OT-1] gi|161326085|gb|EDP97411.1| transcription elongation factor NusA [Kordia algicida OT-1] Length = 410 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 234/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + ++ + +K IDR +++++ D + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENLALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +I L AR +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRIVVADGEVEDPNQEIELTDARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD VG+I + V + + VI +D ++ V+ ++ I + R G+ Sbjct: 121 IHEHDNTTIYKQFKDLVGDIYTAEVHHIRHRAVILLDDEGNEIVLPKENQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P+F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIDRVDLKGNKPMIVMSRTAPEFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA V+ + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLQLYITRALSPARVSSLK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ R+EV + E++S AIG+ G N+RLA QLTG+ ID+ E + +F++ + Sbjct: 301 IDEEAKRVEVFLKPEEVSKAIGKGGFNIRLAGQLTGYEIDVYREGVEEDVELTEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + + ++ + +EET E+ +E E Sbjct: 361 AWV---------IEEFKKIGLDTAKSVLDQELDFLVKQTDLEEETVGEVIRILKEEFED 410 >gi|312892421|ref|ZP_07751916.1| transcription termination factor NusA [Mucilaginibacter paludis DSM 18603] gi|311295205|gb|EFQ72379.1| transcription termination factor NusA [Mucilaginibacter paludis DSM 18603] Length = 411 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 130/402 (32%), Positives = 231/402 (57%), Gaps = 10/402 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ D + R YGT + V +N + GD+ ++R V+E+ E+ Sbjct: 17 KNIDRPTMMSVLEDVFRSMIRKKYGTDENCDVIVNTDNGDLEIWRTRVVMEDGFSEDDDL 76 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A+ DP +++G + + FGR A+ +A+Q ++ K+ E E+D Y ++KD+ Sbjct: 77 EIELAEAKLLDPDLEVGDEHIELITLESFGRRAILAARQTLVSKILELEKDEIYKKYKDR 136 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGEII+G V + + +++D ++ ++ + E I + + GD V++ ++ V P Sbjct: 137 VGEIITGEVYQVWKKETLVLDDEGNELLLPKSEQIPADYFKKGDSVRAVVHKVDMMNTNP 196 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++++SRT P+F+ +LF +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVG Sbjct: 197 KIIISRTAPEFLQRLFELEVPEIFDGLITIKKIVREPGERAKVAVESYDDRIDPVGACVG 256 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M+GSR+ +V EL++E ID++ ++ + ++ AL PA +T + LD+D V + +Q Sbjct: 257 MKGSRIHGIVRELKNENIDVINFTNNVQLYIQRALSPAKITSIKLDDDKKTAAVYLKPDQ 316 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LA +LTG+ ID+ E + + E + ++ I Sbjct: 317 VSLAIGRGGHNIKLAGKLTGYEIDVYREAD-------EHEEDVDIEEFSDEIEGWILDEF 369 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 G + + + + E+ +EET ++ + E Sbjct: 370 KRIGLDTAKSVLALSVGELVKRTDLEEETVKDVLSILQAEFE 411 >gi|77414451|ref|ZP_00790602.1| transcription termination factor NusA [Streptococcus agalactiae 515] gi|77159496|gb|EAO70656.1| transcription termination factor NusA [Streptococcus agalactiae 515] Length = 381 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 208/361 (57%), Gaps = 15/361 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + EV Sbjct: 1 MLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 121 VTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ V++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPA 300 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEAQ 360 Query: 354 D 354 + Sbjct: 361 E 361 >gi|225016950|ref|ZP_03706142.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum DSM 5476] gi|224950264|gb|EEG31473.1| hypothetical protein CLOSTMETH_00865 [Clostridium methylpentosum DSM 5476] Length = 412 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 145/403 (35%), Positives = 229/403 (56%), Gaps = 6/403 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E + +A EK I + ++ ++++I A + +G + ++ V I+P T + + Sbjct: 2 NNEFFDALEMIAKEKGISMEYLIEKISNAITIAVKKDFGGIENVNVVIDPLTRRYKVSII 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EVE+ +I + A +G V L FGR+A Q+AK VI Q +REA Sbjct: 62 KTVVREVEDPVNEILIDEALKYSKRAMVGEPVEIKLETKQFGRIAAQTAKHVIRQGIREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVK 183 ER++ + DKVGE+I+ TV +++ N VIV++ S+ ++ ++E + ++L PGD+VK Sbjct: 122 EREQMLAQMGDKVGEVITATVSKIDPTNGNVIVEIDKSEVILFKNEQLPTDHLLPGDKVK 181 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 Y+ DV ++ + +SRTH + +LF +EVPEI++G V+VK++SR+ GSR K+AV+S Sbjct: 182 VYVVDVMASEKRCSLKISRTHKDLVKRLFEIEVPEIFDGTVEVKSISREAGSRTKIAVYS 241 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302 D ++DP+GAC+G +G RV ++ EL EKID+V +S D A F+ AL PA V +V L D Sbjct: 242 KDENVDPIGACIGPKGMRVGNIIDELGGEKIDVVKYSEDPAKFIAEALSPATVVEVQLSD 301 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + V VP QLSLAIG +GQN +LA++LTG+ IDI E S ++ + Sbjct: 302 DGEKIAFVSVPDHQLSLAIGNKGQNAKLAARLTGYKIDISPE---SGFYGEEKRLAAKQE 358 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 + + L E +DV + I S E D+E Sbjct: 359 PKEDAEEAEQQELPEDEVVSDVGQPEEQSEENIPSEEAADDEI 401 >gi|255692953|ref|ZP_05416628.1| transcription termination factor NusA [Bacteroides finegoldii DSM 17565] gi|260621264|gb|EEX44135.1| transcription termination factor NusA [Bacteroides finegoldii DSM 17565] Length = 421 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 138/424 (32%), Positives = 242/424 (57%), Gaps = 11/424 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S+ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDESVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ + Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGID 421 E + Sbjct: 417 EESE 420 >gi|313897438|ref|ZP_07830981.1| transcription termination factor NusA [Clostridium sp. HGF2] gi|312957808|gb|EFR39433.1| transcription termination factor NusA [Clostridium sp. HGF2] Length = 566 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 145/445 (32%), Positives = 238/445 (53%), Gaps = 16/445 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 + + A+ ++ + ++VV+ + +++ KA R + +RV++N ++GDI +++ Sbjct: 5 DFMAAMQAIETDRKLSKEVVVDALQEALAKAFRKHIEIPDALVRVDVNEKSGDIKVYQQR 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +VE VE+ +ISL+ A+ + +++GGVV + + D GR AV AK V+ QK+REAE Sbjct: 65 LIVENVEDDELEISLEDAKRVNQELELGGVVEEEVSIADLGRAAVILAKNVMKQKIREAE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 + Y E+ DKV E++ GT++ VE +V++G + ++ +++ I E R G+ ++ I Sbjct: 125 KLVVYEEYCDKVEEMVMGTIESVEEKFCVVNIGKTLALMPKNQQIPNERYREGEMIRVVI 184 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 +V +E +G QVL+SR + +LF EVPEI+ GI+++KA++R+ G R K+AV+S + Sbjct: 185 TEVNKETKGAQVLVSRGDATLVKRLFEKEVPEIFQGIIEIKAIAREAGERTKMAVYSHNE 244 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG 306 +IDP+GAC+G RG RVQ ++ EL EKIDI WS D + NAL PA V V+ E+ Sbjct: 245 NIDPIGACIGPRGQRVQVIIDELGGEKIDIFEWSEDVTELIKNALSPAEVLAVIPSEERK 304 Query: 307 -RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + V+VP QLSLAIG+RG+N RLA +LTG IDI E + + + Sbjct: 305 GGLLVVVPDNQLSLAIGKRGKNARLAVKLTGNKIDIKAETDVDAAGINWKEIAMKQREEF 364 Query: 366 INVDEIIAHLLVAEGFADVE--------ELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + + E F + + A V E + E E E Sbjct: 365 LARQQEAKLAAQMERFEENAQPQDALSLDDAGVSFQEAVTEEAVSEPVVEESSEPVEATA 424 Query: 418 EGIDITL------QKKIRELGVSEE 436 ++ + E EE Sbjct: 425 SPAVEEATVSAPVEEVVEEAQPQEE 449 >gi|226355942|ref|YP_002785682.1| transcription elongation factor NusA [Deinococcus deserti VCD115] gi|226317932|gb|ACO45928.1| putative Transcription elongation factor NusA [Deinococcus deserti VCD115] Length = 395 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 219/388 (56%), Gaps = 3/388 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 VA ++I+ ++ S+ +A I V ++P++G++ + + EVVE Sbjct: 10 DALREVAQARNINELQLIEAFEQSLAQAYTRNVEPDKRIEVHLDPQSGELEVLVVREVVE 69 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP ++IG + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 70 KVEDEHLQISLADALELDPGVEIGMEMEFPVDREKFSRIALQAAKQTLTQKMRETERNVV 129 Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+KD+ G++++ V R + N V+LG + ++ E I E L PG+RVK Y+ +V Sbjct: 130 FNEYKDREGQVLTAQVVRSDNKGNWFVELGAGEAILPPREQIPGEKLTPGNRVKIYLKEV 189 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NGIV+VKA+SR+ G R+K+AVFS +S++D Sbjct: 190 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAISREAGQRSKVAVFSHNSNVD 249 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG+R+QAV EL E++D+++W ++ F+ NAL PA V + + D Sbjct: 250 PIGACIGHRGNRIQAVTGELGRERVDVILWDANTREFIRNALSPAKVGLIEVQPDRREAT 309 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG+ ID+ S D Sbjct: 310 VTVTPDQLSLAIGKGGQNVRLAAKLTGFKIDLRETAAISDLDAAMQQALQDDQDGRDGDD 369 Query: 370 EIIAHLLVAEGFADVEELACVKISEIAS 397 + F D + +A + Sbjct: 370 TAKSA--FDALFKDSKSVATASPDDTQD 395 >gi|333024104|ref|ZP_08452168.1| putative transcription termination factor NusA [Streptomyces sp. Tu6071] gi|332743956|gb|EGJ74397.1| putative transcription termination factor NusA [Streptomyces sp. Tu6071] Length = 369 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 127/344 (36%), Positives = 194/344 (56%), Gaps = 18/344 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ V Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E E + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 KEEEADLADLG-EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDED 332 >gi|311748745|ref|ZP_07722530.1| transcription termination factor NusA [Algoriphagus sp. PR1] gi|126577279|gb|EAZ81527.1| transcription termination factor NusA [Algoriphagus sp. PR1] Length = 414 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 135/405 (33%), Positives = 231/405 (57%), Gaps = 10/405 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K++DR ++ ++ D + R + + V IN + GD+ +FR+ E+ Sbjct: 6 LIESFAEFARSKNVDRPTMIRILEDVFRAMIRKKFENDENFDVTINADKGDLEIFRIREI 65 Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ +ISL AR +P +IG V + + +FGR AVQ A+Q +IQ++++ Sbjct: 66 VDDNSEDIWDFDKISLTEARKIEPDFEIGEEVYEKIELEEFGRRAVQMARQTLIQRIKDL 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+D Y +++++VGEI+S V ++ +++D ++ ++ + E I ++ R GD VK+ Sbjct: 126 EKDILYNKYEEQVGEIVSAEVYQILGREVLLMDNEGNELILPKGEQIPKDRFRKGDAVKA 185 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V P+++LSRT P F+ +LF EVPE+Y+G++ + + R+PG RAK+AV S Sbjct: 186 IVHRVDMMNGNPKIILSRTSPVFLERLFENEVPEVYDGLITIVKIVREPGERAKVAVESY 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGM+GSR+ AVV EL++E ID++ ++ + +V AL PA V+ + D++ Sbjct: 246 DDRIDPVGACVGMKGSRIHAVVRELQNENIDVINFTDNLDLYVTRALSPAKVSSITADQE 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 RI V + +Q+SLAIG+ G N++LAS+L G+ ID+ E + E Sbjct: 306 TKRISVFLKPDQVSLAIGKGGYNIKLASKLVGYEIDVFRELN------EYEEEDVDLVEF 359 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 +D I L G + + + ++ +EET EI Sbjct: 360 TDEIDGWIIEELKKTGLDTAKSVLTLSKEDLLRRTELEEETIDEI 404 >gi|84498575|ref|ZP_00997338.1| transcription elongation factor NusA [Janibacter sp. HTCC2649] gi|84381108|gb|EAP96993.1| transcription elongation factor NusA [Janibacter sp. HTCC2649] Length = 385 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 202/366 (55%), Gaps = 29/366 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL--- 66 L + V E+ I DV++ + ++ A + G + R E++ +TG ++++ Sbjct: 5 LAVLRGVERERDISLDVLIPAIEQALLLAYQRTDGAYRNSRAELDRKTGHVTIWAREEFE 64 Query: 67 -----------------EVVEEVENYTCQIS-LKVARDRDP----SIDIGGVVSDPLPPM 104 +V + + R P + G D P Sbjct: 65 VPVEEEPEAPAETPTPDTASADVAAPATESAGATEERVERPAPRMRREYGPEFDD--TPT 122 Query: 105 DFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDG 163 DFGRVA +A+QVI+Q++R+ E D +FK + G+I++G +++ + +V VD G +G Sbjct: 123 DFGRVAAATARQVIVQRLRDIEDDAIMGDFKGREGDIVAGVIQQSPDPRHVTVDFGTVEG 182 Query: 164 VIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 ++ E + E G R++ Y+ V+R RGPQ+ LSRTHP + KLF +EVPEI +G Sbjct: 183 ILPVAEQVPGEKYVHGQRLRVYVVSVKRGLRGPQIGLSRTHPNLVRKLFALEVPEIADGS 242 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V++ A++R+ G R K+AV + + ++ GAC+G G+RV+AV+ EL EKIDIV +S D Sbjct: 243 VEIAALARESGHRTKIAVHTKVAGLNAKGACIGPMGARVRAVMAELHGEKIDIVDFSEDP 302 Query: 284 ATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A+F+ +AL P+ V V + D + VIVP QLSLAIGR GQN RLA++LTGW IDI Sbjct: 303 ASFIASALSPSRVQSVEIVDWQLRAARVIVPDYQLSLAIGREGQNARLAAKLTGWRIDIR 362 Query: 343 TEEEDS 348 ++ + Sbjct: 363 SDNPTA 368 >gi|319744370|gb|EFV96730.1| transcription termination factor NusA [Streptococcus agalactiae ATCC 13813] Length = 386 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 212/378 (56%), Gaps = 15/378 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + E Sbjct: 7 EMLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVRE 66 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VV+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 67 VVDEVFDSRLEISLKNALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMR 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 127 EVTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVY 186 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S+ Sbjct: 187 KVENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSN 246 Query: 248 IDPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRP 293 +D +G VG GS ++ V++ E ID++ W D A F+ NA+ P Sbjct: 247 VDAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAP 306 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 A V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 307 AEVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEA 366 Query: 353 KDFNERTQFFMQAINVDE 370 ++ + D+ Sbjct: 367 QELQTEEVAQESEVISDK 384 >gi|53711553|ref|YP_097545.1| transcription elongation factor NusA [Bacteroides fragilis YCH46] gi|60679812|ref|YP_209956.1| transcription elongation factor NusA [Bacteroides fragilis NCTC 9343] gi|253564386|ref|ZP_04841843.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5] gi|265764945|ref|ZP_06093220.1| transcription termination factor NusA [Bacteroides sp. 2_1_16] gi|52214418|dbj|BAD47011.1| putative nitrogen utilization substance protein [Bacteroides fragilis YCH46] gi|60491246|emb|CAH05994.1| putative N utilization substance protein A [Bacteroides fragilis NCTC 9343] gi|251948162|gb|EES88444.1| transcription elongation factor NusA [Bacteroides sp. 3_2_5] gi|263254329|gb|EEZ25763.1| transcription termination factor NusA [Bacteroides sp. 2_1_16] gi|301161335|emb|CBW20875.1| putative N utilization substance protein A [Bacteroides fragilis 638R] Length = 420 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 136/412 (33%), Positives = 238/412 (57%), Gaps = 11/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++ + + + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENAQDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKSVLNAPREMLIEKTDLEEETVDEV 408 >gi|76798057|ref|ZP_00780314.1| transcription termination factor NusA [Streptococcus agalactiae 18RS21] gi|77406370|ref|ZP_00783432.1| transcription termination factor NusA [Streptococcus agalactiae H36B] gi|77408786|ref|ZP_00785516.1| transcription termination factor NusA [Streptococcus agalactiae COH1] gi|77411664|ref|ZP_00788004.1| transcription termination factor NusA [Streptococcus agalactiae CJB111] gi|22533395|gb|AAM99284.1|AE014208_24 N utilization substance protein A [Streptococcus agalactiae 2603V/R] gi|76586616|gb|EAO63117.1| transcription termination factor NusA [Streptococcus agalactiae 18RS21] gi|77162308|gb|EAO73279.1| transcription termination factor NusA [Streptococcus agalactiae CJB111] gi|77172631|gb|EAO75770.1| transcription termination factor NusA [Streptococcus agalactiae COH1] gi|77175039|gb|EAO77846.1| transcription termination factor NusA [Streptococcus agalactiae H36B] Length = 379 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 126/377 (33%), Positives = 211/377 (55%), Gaps = 15/377 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L+ + EK I+++ ++ + +S++ A + YG +E N + D +++ + EV Sbjct: 1 MLEAFRILEEEKHINKEDIIDAVTESLKSAYKRRYGQSESCVIEFNEKKADFTVYTVREV 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+EV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R+ Sbjct: 61 VDEVFDSRLEISLKDALAISSAYELGDKIRFEESVTEFGRVAAQSAKQTIMEKMRRQMRE 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+K GEI++GTV+R + + V+LG+ + + + I E+ + D + Y+Y Sbjct: 121 VTFNEYKQHEGEIMTGTVERFDQRFIYVNLGSLEAQLSHQDQIPGESFKSHDMIDVYVYK 180 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +G V +SR+HP+F+ ++ E+PE+++G V++ +VSR+ G R K+AV S +S++ Sbjct: 181 VENNPKGVNVFVSRSHPEFIKRIMEREIPEVFDGTVEIMSVSREAGDRTKVAVRSHNSNV 240 Query: 249 DPVGACVGMRGSRVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPA 294 D +G VG GS ++ V++ E ID++ W D A F+ NA+ PA Sbjct: 241 DAIGTIVGRGGSNIKKVISNFHPKRVDAKTGLEIPVEENIDVIQWVEDPAEFIYNAIAPA 300 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V V+ DED R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E + Sbjct: 301 EVDMVLFDDEDTKRATVVVPDSKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEYEKMEAQ 360 Query: 354 DFNERTQFFMQAINVDE 370 + + D+ Sbjct: 361 ELQTEEVAQESEVISDK 377 >gi|325856510|ref|ZP_08172199.1| transcription termination factor NusA [Prevotella denticola CRIS 18C-A] gi|327313033|ref|YP_004328470.1| transcription termination factor NusA [Prevotella denticola F0289] gi|325483479|gb|EGC86452.1| transcription termination factor NusA [Prevotella denticola CRIS 18C-A] gi|326944462|gb|AEA20347.1| transcription termination factor NusA [Prevotella denticola F0289] Length = 421 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 138/393 (35%), Positives = 229/393 (58%), Gaps = 8/393 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + ++VD N++ ++ +DE I R+ R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKDEQIPRDQYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + + Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409 G ++ + +EET + Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEEETVDNV 411 >gi|332520007|ref|ZP_08396471.1| transcription termination factor NusA [Lacinutrix algicola 5H-3-7-4] gi|332044566|gb|EGI80760.1| transcription termination factor NusA [Lacinutrix algicola 5H-3-7-4] Length = 410 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 235/419 (56%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +K IDR +++++ D + A + +G + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEDVFRSALKKKFGDDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRIVVADGEVEEPNQEISLTAARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + + +FK+ G++ + V + + VI +D ++ ++ +D+ I + R GD Sbjct: 121 IHEHDNTNIFKQFKELEGDLYTAEVHHIRHRAVILLDDEGNEIILPKDKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+A Sbjct: 181 NVRGIIDSVELKGNKPAIIMSRTSPKFLEKLFESEIPEVFDGLITIKNVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA VT + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNLQLYITRALSPARVTSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ R E I+ E++S AIGR G N+RLA QLTG+ ID+ E + ++F++ Sbjct: 301 IDEENKRAEAILKPEEVSKAIGRGGHNIRLAGQLTGYDIDVFREGAEEDVELREFSD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ I G + + + ++ +EET +++ +E E Sbjct: 358 ------EIEDWIIAEFSKAGLDTAKSILEQDVEDLVKRTDLEEETILDVIRILKEEFED 410 >gi|15639877|ref|NP_219327.1| transcription elongation factor NusA [Treponema pallidum subsp. pallidum str. Nichols] gi|189026115|ref|YP_001933887.1| transcription elongation factor NusA [Treponema pallidum subsp. pallidum SS14] gi|3323210|gb|AAC65849.1| N utilization substance protein A (nusA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018690|gb|ACD71308.1| N utilization substance protein A [Treponema pallidum subsp. pallidum SS14] gi|291060251|gb|ADD72986.1| transcription elongation protein NusA [Treponema pallidum subsp. pallidum str. Chicago] Length = 485 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 153/466 (32%), Positives = 241/466 (51%), Gaps = 28/466 (6%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A EK +D D ++ +++ A ++ + T + V E + ++ VVEEV + Sbjct: 13 AQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEE--RVCIYARKRVVEEVYDRV 70 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 ++ L A + DP+ + V L DF R +VQ+A Q I + RE ++D Y E+K Sbjct: 71 SEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYAEYKS 130 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 K GEII G +R ++ VDLG +G++ + + +++ R DR+KS + +VR+ + Sbjct: 131 KEGEIIVGYYQRARNEHIYVDLGKVEGLMPKSHQLPQDDYRQNDRIKSLVREVRKHPKSS 190 Query: 197 --QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 Q++LSRT F+ +L +EVPEIY+GIV+V + R+PG R K+AV S +DPVGAC Sbjct: 191 VVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVDPVGAC 250 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 VG RG R++ V+ EL DEKID++ +SPD F+ NAL PA V VV+ DE+ IV Sbjct: 251 VGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSALAIVA 310 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR------------QKDFNERTQF 361 + QLS+AIG++G NVRLA++L W ID+ TE + + + Sbjct: 311 ESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDYQEESE 370 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 F + + +L G DV+ L + + ++EG DE E+ Sbjct: 371 FSSYVGFTPELIKILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLA---------A 421 Query: 422 ITLQKKIRELGVSEELCSIPGI--DSKIKVALGENGIKTMEDLAGC 465 I ++ E G + S PG D + E G++ D++ C Sbjct: 422 IEENFEVVEEGEEASVTSSPGTGGDEDQALQCPECGVRITTDMSEC 467 >gi|237716685|ref|ZP_04547166.1| transcription elongation factor NusA [Bacteroides sp. D1] gi|262405461|ref|ZP_06082011.1| transcription termination factor NusA [Bacteroides sp. 2_1_22] gi|293370440|ref|ZP_06616993.1| transcription termination factor NusA [Bacteroides ovatus SD CMC 3f] gi|294646240|ref|ZP_06723894.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a] gi|294809092|ref|ZP_06767810.1| transcription termination factor NusA [Bacteroides xylanisolvens SD CC 1b] gi|229442668|gb|EEO48459.1| transcription elongation factor NusA [Bacteroides sp. D1] gi|262356336|gb|EEZ05426.1| transcription termination factor NusA [Bacteroides sp. 2_1_22] gi|292634432|gb|EFF52968.1| transcription termination factor NusA [Bacteroides ovatus SD CMC 3f] gi|292638458|gb|EFF56822.1| transcription termination factor NusA [Bacteroides ovatus SD CC 2a] gi|294443646|gb|EFG12395.1| transcription termination factor NusA [Bacteroides xylanisolvens SD CC 1b] Length = 424 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 137/413 (33%), Positives = 238/413 (57%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S+ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDESVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409 >gi|319953582|ref|YP_004164849.1| nusa antitermination factor [Cellulophaga algicola DSM 14237] gi|319422242|gb|ADV49351.1| NusA antitermination factor [Cellulophaga algicola DSM 14237] Length = 410 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 131/409 (32%), Positives = 224/409 (54%), Gaps = 15/409 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ D + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKFIDRVTLMAILEDVFRNALKKKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE +ISL AR +P ++G VS+ + + GR A+ + +Q +I K Sbjct: 61 RNRIVVEDGEVEEPNEEISLSEARKIEPDFEVGEDVSEEVKLIQLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y FKD G + + V + + VI+ D ++ ++ +D+ I + R GD Sbjct: 121 IHEHDNTTIYKHFKDLEGGLYTAEVHHIRHKVVILLDDEGNELILPKDKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ LF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPVIVMSRTAPAFLEALFFQEIPEVFDGLITVKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ W+ + V AL PA V+ V Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINWTSNPQLLVTRALSPARVSSVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LD++ +V + E++S AIGR G N+RLA QLTG+ ID+ E + +F++ + Sbjct: 301 LDDEKMTAQVYLRPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGVEEDVELTEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ G + + ++ +EET VE+ Sbjct: 361 GWI---------IEEFKKIGMDTARSVLEQDVDDLVKRTDLEEETIVEV 400 >gi|119962022|ref|YP_947326.1| transcription termination factor NusA [Arthrobacter aurescens TC1] gi|119948881|gb|ABM07792.1| transcription termination factor NusA [Arthrobacter aurescens TC1] Length = 326 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 120/344 (34%), Positives = 197/344 (57%), Gaps = 24/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKTPGAFEKARAELDRKSGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D + G D P FGR+A +A+Q+I+Q++R+ E D Sbjct: 59 --------------ATEIDDDGEPIGEFED--TPAGFGRIAASTARQIILQRLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFK + GE+++G +++ ++I V+LG + ++ E + E G R+++++ D Sbjct: 103 VLGEFKGREGELVAGMIQQGNNPHMIQVNLGAVEALLPPPEQVPGEKYLHGSRLRAFVVD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP + LSR+HP + KLF MEVPEI + V++ A++R+ G R K+AV ++ + Sbjct: 163 VHRGAKGPSITLSRSHPGLVRKLFEMEVPEIADHSVEIVALAREAGHRTKIAVKANTPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ N+L P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSDDPATFIANSLSPSRVNSVTITDESTRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ + Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDAAPAKTD 326 >gi|326333613|ref|ZP_08199851.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] gi|325948594|gb|EGD40696.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] Length = 325 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 24/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + E+ I DV++ + + A G + RV+++ +TG + + Sbjct: 5 MSILRMLEREREISLDVLVEAIEQGLLTAYHKTEGAQTKARVDLDRKTGHVRVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D ++ G D P FGR+A +AKQ+++Q++R+AE D Sbjct: 59 --------------ASEVDDEGNVVGEYDD--TPEGFGRIAATTAKQIVLQRLRDAEDDV 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 ++ EF K G+I+SG +++ +V+VDLG +GVI E + E+ G R+K+ + Sbjct: 103 KFGEFSGKEGDILSGVIQQGRNPDDVLVDLGRLEGVIPLSERVPGEDYGHGTRIKALVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+ RGPQ+ LSR+HP + KLF EVPEI +G V++ A++R+ G R K+AV S+ + Sbjct: 163 VRKGMRGPQITLSRSHPNLVKKLFSFEVPEIADGTVEIAAIAREAGHRTKIAVKSTVPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V++EL+ EKIDIV WS D V +AL PA V+ V +DE Sbjct: 223 NAKGACIGPMGQRVRQVMSELQGEKIDIVDWSEDPKVLVASALSPARVSSVEIIDEATKS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++EE Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDEET 322 >gi|270294867|ref|ZP_06201068.1| transcription termination factor NusA [Bacteroides sp. D20] gi|270274114|gb|EFA19975.1| transcription termination factor NusA [Bacteroides sp. D20] Length = 421 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 138/425 (32%), Positives = 245/425 (57%), Gaps = 11/425 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++I + + + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAIEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ ++ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGIDI 422 E + Sbjct: 417 EEENE 421 >gi|329964512|ref|ZP_08301566.1| transcription termination factor NusA [Bacteroides fluxus YIT 12057] gi|328524912|gb|EGF51964.1| transcription termination factor NusA [Bacteroides fluxus YIT 12057] Length = 423 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 137/423 (32%), Positives = 242/423 (57%), Gaps = 11/423 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVVE+ +EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVEDAELENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ ++ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGI 420 E Sbjct: 417 EEE 419 >gi|282881115|ref|ZP_06289802.1| transcription termination factor NusA [Prevotella timonensis CRIS 5C-B1] gi|281304919|gb|EFA96992.1| transcription termination factor NusA [Prevotella timonensis CRIS 5C-B1] Length = 421 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 231/403 (57%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV + VE+ Sbjct: 24 KNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+LK A + +P +IG VS+P+ FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EIALKEALEIEPDYEIGEEVSEPINFSKFGRRAILNLRQTLASKVLELEHDALYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + +++D N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIISGEVYQIWKREVLLIDDENNELILPKSEQIPSDQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPVFLERLLEAEVPEINDGLISIKRIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID+V ++ + V AL PA ++ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVVNYTSNIKLLVQRALSPAHISSINIDEENHKAEVYLKPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E D+ + + + +D+ + + Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFREVSDADADEDIYLDEFDD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + G +++ + +EET + + E Sbjct: 379 KSIGLDTAKQVLNAPREMLIEKADLEEETVDNLIKVLKAEFEQ 421 >gi|281422606|ref|ZP_06253605.1| transcription termination factor NusA [Prevotella copri DSM 18205] gi|281403276|gb|EFB33956.1| transcription termination factor NusA [Prevotella copri DSM 18205] Length = 420 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 232/403 (57%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV + VE+ Sbjct: 23 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRIVVADGEVEDENK 82 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 83 EITLSEARKIEPDYEVGEDVSETVDFNKFGRRAILTLRQTLASKILELEHDSLYNKYKDR 142 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V + + +IVD N++ ++ + E I + R G+ V++ I V E P Sbjct: 143 VGQVISGEVYQVWKREVLIVDDENNELMLPKTEQIPGDTYRKGETVRAVILRVDNENNNP 202 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV + D IDPVGACVG Sbjct: 203 KIILSRTAPIFLQRLLEAEVPEIADGLIAIRRIARLPGERAKIAVETFDERIDPVGACVG 262 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E +D++ +S ++ F+ AL PA V+ + +D++ + EV + E+ Sbjct: 263 VKGSRVHGIVRELCNENLDVINYSSNTKLFIQRALAPAKVSSINVDDENKKAEVYLQPEE 322 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E +++ + + + +D+ + + Sbjct: 323 VSLAIGRGGMNIKLASMLTEYTIDVFREVDENEADEDIYLDEFSD-----EIDQWVIDAI 377 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 G +++ + + +EET + R E Sbjct: 378 KGIGLDTAKQVLNAPRNLLIEKADLEEETVDHVLSVLRAEFEQ 420 >gi|332878281|ref|ZP_08446007.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683732|gb|EGJ56603.1| transcription termination factor NusA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 410 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 135/418 (32%), Positives = 231/418 (55%), Gaps = 11/418 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ V N +I+L VAR +P ++G VS+ + D GR A+ + +Q +I K Sbjct: 61 RNRIVVEDGAVTNDNQEIALSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y FKD +G+I+ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 121 IHEYDSTTIYRRFKDLIGQIVVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +GI+ V V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPIFLQRLFEQEIPEIADGIITVNKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + + AL PA VT V Sbjct: 241 VDSFDERIDAVGACVGVRGARIHGIVRELGNENIDVIPFTNNVSLLITRALAPAHVTSVT 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L+E+ R +V +P E++S AIG+ G N+RLASQLTG+ ID+ E + + + Sbjct: 301 LNEEEKRADVFLPNEEVSKAIGKSGYNIRLASQLTGYEIDVYREGITDEDIELTEFDD-- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ I L G + + + E+ + +EET EIQ E E Sbjct: 359 ------EIEGWIIEQLHNAGLDTAKSVLELTPEELMTRTDLEEETVKEIQRVLAEEFE 410 >gi|108804247|ref|YP_644184.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941] gi|108765490|gb|ABG04372.1| NusA antitermination factor [Rubrobacter xylanophilus DSM 9941] Length = 381 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 132/338 (39%), Positives = 199/338 (58%), Gaps = 30/338 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL + EK I + V V+ +S+ A R G + V ++ ETGD+ V Sbjct: 5 LLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGDLR------V 58 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 +++ E+ I+ + DF R+A +Q +Q++ E Sbjct: 59 MKDGED----ITPED--------------------FDFTRIAASLMRQNFMQRLNEVHNQ 94 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ +++G++++G V++ I+DLG + ++ E + E G R+K Y+ D Sbjct: 95 QLVKEYGERIGDVVTGIVQQAHRRMTIIDLGRVEALLPASEQVPGERYENGQRLKVYLLD 154 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 ++ RGP +++SR H + LF +EVPEIY+G+V++KAV+R+ G R+K+AV+S++ I Sbjct: 155 IKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAVWSNEPGI 214 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DPVGACVG RGSRV+AVV+ELR+EKIDI+ W PD A F+ AL PA V +V LDE+ + Sbjct: 215 DPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYLDEEEKQA 274 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 EVIVP +QLSLAIGR GQN RLA +LT W IDI E + Sbjct: 275 EVIVPDDQLSLAIGREGQNARLAVKLTDWKIDIKPESQ 312 >gi|325269683|ref|ZP_08136296.1| N utilization substance protein A [Prevotella multiformis DSM 16608] gi|324988051|gb|EGC20021.1| N utilization substance protein A [Prevotella multiformis DSM 16608] Length = 421 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 137/393 (34%), Positives = 228/393 (58%), Gaps = 8/393 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QISLTDARKIEDDYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + ++VD N++ ++ + E I R+ R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETVRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEISDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALSPAKVSSLNVDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + + Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409 G ++ + +EET + Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEEETVDNV 411 >gi|160887870|ref|ZP_02068873.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492] gi|317477855|ref|ZP_07937041.1| transcription termination factor NusA [Bacteroides sp. 4_1_36] gi|156862556|gb|EDO55987.1| hypothetical protein BACUNI_00273 [Bacteroides uniformis ATCC 8492] gi|316905991|gb|EFV27759.1| transcription termination factor NusA [Bacteroides sp. 4_1_36] Length = 421 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 138/425 (32%), Positives = 245/425 (57%), Gaps = 11/425 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A ++E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKVETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++EN QI+L A+ D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLENPNLQIALSEAQKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++I + + + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDEAIEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ ++ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGIDI 422 E + Sbjct: 417 EEEEQ 421 >gi|315606722|ref|ZP_07881732.1| transcription termination factor NusA [Prevotella buccae ATCC 33574] gi|315251577|gb|EFU31556.1| transcription termination factor NusA [Prevotella buccae ATCC 33574] Length = 421 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 233/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + VE+ +ISL A+ +P ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 73 VADGEVEDENKEISLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E +++ + + E Sbjct: 313 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREIDENAADEDIYLEEFSD---- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G +++ + +EET + R E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNVLNVLRAEFEQ 421 >gi|255010119|ref|ZP_05282245.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] gi|313147917|ref|ZP_07810110.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] gi|313136684|gb|EFR54044.1| transcription elongation factor NusA [Bacteroides fragilis 3_1_12] Length = 420 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 136/412 (33%), Positives = 238/412 (57%), Gaps = 11/412 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQQIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E +++ + + + Sbjct: 302 SIRLNEEERKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENAQDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKSVLTAPREMLIEKTDLEEETVDEV 408 >gi|297626628|ref|YP_003688391.1| Transcription termination/ antitermination factor NusA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922393|emb|CBL56965.1| Transcription termination/ antitermination factor NusA [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 352 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 136/350 (38%), Positives = 195/350 (55%), Gaps = 24/350 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +EK I D ++ + D++ A V +N TG++S+ V Sbjct: 5 MTALRALEHEKEIPLDYLVGTLEDALLNAYEKTEHPKPGAHVVLNRRTGEVSVM-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EV + +G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 PEVNDEGE--------------SVGEY---DDTPTDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +Y +F G+++ G V++ I VDLG+ + ++ E + E+ + G R++ Y+ Sbjct: 103 KYGKFSAVEGDVVMGVVQQDRGSKTIRVDLGDIEAIMPLAEQVPGEDYKHGTRLRVYVVT 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR+E RGPQV++SRTHP + KLF +EVPEI G+V+VKA++R+ G R K+AV S + + Sbjct: 163 VRKEARGPQVVVSRTHPNLVKKLFELEVPEIEQGVVEVKAIARESGHRTKIAVVSHNPDV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 GAC+G G RV+AV+ EL DEKIDI+ WS D A FV NAL PA KV +D Sbjct: 223 SAKGACIGPMGQRVRAVMRELNDEKIDIIDWSADPAEFVANALSPAKALKVTVVDAGARA 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 VIVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 283 ARVIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDTAPDVPPANPGRP 332 >gi|239982635|ref|ZP_04705159.1| transcription elongation factor NusA [Streptomyces albus J1074] gi|291454476|ref|ZP_06593866.1| transcription elongation factor NusA [Streptomyces albus J1074] gi|291357425|gb|EFE84327.1| transcription elongation factor NusA [Streptomyces albus J1074] Length = 358 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 129/340 (37%), Positives = 195/340 (57%), Gaps = 18/340 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV ++ ETG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRQARVRLDRETGHVTVWAK---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ ++ + R+ D P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 61 EDRDDLVGAVEGTEPREFDD------------TPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYPHGARLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGVRGPSVTLSRTHPGLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDDPADMVANALSPARVSKVEVVDFAARS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 328 >gi|328885406|emb|CCA58645.1| Transcription termination protein NusA [Streptomyces venezuelae ATCC 10712] Length = 331 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 197/345 (57%), Gaps = 22/345 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A+EK I D+++ + ++ A RVE++ TG ++++ Sbjct: 6 KLLKGLAHEKEISFDLLVEAIESALLIAYHRTPDARRHARVELDRVTGHVTVWAK----- 60 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ + L+ ++ P DFGR+A +A+QVI Q++R+AE D Sbjct: 61 --EDPSE---LEEGQEPK---------DFDDTPSDFGRIAASTARQVIQQRLRDAENDVT 106 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G++++G V++ + NV+V L + ++ E + E G R+++Y+ Sbjct: 107 FGEYARREGDVVAGVVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYSHGLRLRTYVVR 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 167 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 +P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 227 NPKGACIGPMGSRVRNVMAELLGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDMAARS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E S + Sbjct: 287 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPSGPQD 331 >gi|318081083|ref|ZP_07988415.1| transcription elongation factor NusA [Streptomyces sp. SA3_actF] Length = 343 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 18/350 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ + E Sbjct: 1 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-VKEEA 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++ + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 ADLADLG-----EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 104 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 105 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 164 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 165 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 224 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D Sbjct: 225 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 284 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + Sbjct: 285 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDEDGNATEN 334 >gi|332883100|gb|EGK03384.1| transcription termination factor NusA [Dysgonomonas mossii DSM 22836] Length = 418 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 138/422 (32%), Positives = 238/422 (56%), Gaps = 12/422 (2%) Query: 6 RLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 + E + + D + E KSIDR ++SV+ DS + L+G+ + V INP+ GD+ + Sbjct: 3 KKETINLIDTFSEFKELKSIDRMTMISVLEDSFRNVIAKLFGSNDNYDVIINPDKGDLEI 62 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R +VE+ +E+ +I+L A+ D ++G V+D + DFGR A+ + +Q + Sbjct: 63 WRNRVIVEDDQLEDDNTEIALSEAKKIDEDFEVGEEVTDEVFFEDFGRRAILNLRQTLTS 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPG 179 K+ E +++ Y +K+K+GEI+SG V ++ +++ D + ++ + E I + R G Sbjct: 123 KILELQKESLYNRYKEKIGEIVSGEVYQIWKKEILLLDDEKEELLLPKTEQIPSDFFRKG 182 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + V++ + V + P+++LSRT P F+ +L +EVPEI +G++ +K ++R PG RAK+ Sbjct: 183 EHVRAVVERVDNKNNNPKIILSRTSPTFLERLLELEVPEINDGLITIKNIARIPGERAKV 242 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVGM+GSR+ +V ELR+E IDI+ ++ + ++ AL PA +T V Sbjct: 243 AVESYDERIDPVGACVGMKGSRIHGIVRELRNENIDIINYTSNMNLYIQRALSPAKITSV 302 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++E+ R EV++ E++SLAIG+ G N++LAS LTG+TID+ + +D +E Sbjct: 303 KINEEEKRAEVLLRPEEVSLAIGKGGFNIKLASMLTGYTIDVYRDIDDFDEEDIYLDEFR 362 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D + L G + + ++ +E T EI R + Sbjct: 363 D------EIDGWVIDQLKKIGCVTAKNVLATDRDKLIQEADLEENTVDEILNILRAEFDD 416 Query: 420 ID 421 Sbjct: 417 EA 418 >gi|300871262|ref|YP_003786135.1| putative transcription elongation factor NusA [Brachyspira pilosicoli 95/1000] gi|300688963|gb|ADK31634.1| putative transcription elongation factor, NusA [Brachyspira pilosicoli 95/1000] Length = 495 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 138/446 (30%), Positives = 237/446 (53%), Gaps = 34/446 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 ++ EK I D++ V+ + A + YG + + + + +++R + VVEEV Sbjct: 9 LQMLSEEKDISIDLLKEVVESVMILALKKKYGDNVNFHINFD-NNNNPTVYRGVNVVEEV 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREAERDRQY 131 ++ +ISL+ A+ D I++G V + + DFGR+ +AK QK+ E E++ Y Sbjct: 68 KDDRKEISLEEAKKLDSDINLGDEVLILVDHVGDFGRIESTAAKTTFFQKISELEKNIIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EFK + ++++G +R GN+ V+LG ++GV+ + + RE+ GDR+++YIY V Sbjct: 128 NEFKRRENQLVNGYFQRENRGNIYVNLGKTEGVLLKKDLSPREHYAAGDRIRAYIYKVEN 187 Query: 192 EQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 ++ G + L+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+ +DP Sbjct: 188 DRSGHPTIYLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKIAVVSNKPEVDP 247 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309 +GAC+G +G R+QA++ E+ EKID+V WS D ++ A+ PA T++++ D + Sbjct: 248 IGACIGQKGIRIQAIIKEIEGEKIDVVKWSKDIREYIAEAIAPAKPTRIIITDPEKKEAM 307 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN------------------- 350 +I+P +QLSLA+GR G NV+LASQLTG+T D+ TE + N Sbjct: 308 IIIPDDQLSLALGRSGYNVKLASQLTGYTFDLKTETDIKENPELLKDIVPLNQIFAENVE 367 Query: 351 -----------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 + ++D+ + L+ G +EEL + + I Sbjct: 368 ENVENEEAIADTEDTQEAAVSNLYSLTDIDKDVIKTLIDGGINSIEELYGMDANTIIEKT 427 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQ 425 DEET I +E + ++ T + Sbjct: 428 NLDEETVNNIINILKEVVSVVEETDE 453 >gi|302522224|ref|ZP_07274566.1| transcription termination factor NusA [Streptomyces sp. SPB78] gi|302431119|gb|EFL02935.1| transcription termination factor NusA [Streptomyces sp. SPB78] Length = 371 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 18/371 (4%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D ++ + ++ A + RV ++ E+G ++++ V Sbjct: 5 MSALRGLVREKEISFDRLVEAIESALLIAYHRTEHSHRRARVHLDRESGHVTVW-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +E E + + AR R P DFGR+A +AKQVI+Q++R+A+ D Sbjct: 60 KEEEADLADLG-EDARPR----------EFDDTPSDFGRIAATTAKQVILQRLRDAQDDA 108 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ + G+I++G V++ + NV+VD+G + ++ E + E G R++SY+ Sbjct: 109 TLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRSYVVR 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 169 VAKGMRGPSVTLSRTHPNLVKKLFSLEVPEIADGSVEIAAIAREAGHRTKIAVRSNRSGL 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS + A V +AL PA V+ V +D Sbjct: 229 NAKGACIGPMGGRVRNVMAELNGEKIDIVDWSDNPADLVAHALSPARVSHVEVVDLATRS 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + Sbjct: 289 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETTDEDGNATGNGNGNEDRDGR 348 Query: 368 VDEIIAHLLVA 378 +VA Sbjct: 349 RGGGRESGIVA 359 >gi|325280551|ref|YP_004253093.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712] gi|324312360|gb|ADY32913.1| NusA antitermination factor [Odoribacter splanchnicus DSM 20712] Length = 412 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 138/418 (33%), Positives = 234/418 (55%), Gaps = 12/418 (2%) Query: 7 LELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + D+ A E K+IDR ++ V+ D + YGT + + IN + GD+ ++ Sbjct: 1 MENINLIDSFAEFKEFKNIDRATLMRVLEDIFRNMLLKRYGTDENFDIIINIDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ +EN +I+L A+ D ++G V+D + DFGR +V + +Q + + Sbjct: 61 RNRTVVEDDKLENPNSEITLTEAKKIDEDYELGEEVTDEVKFKDFGRRSVLALRQNLSAR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 + E E+D Y ++KDKVG+II G V + + +++D ++ ++ + E I + + GD Sbjct: 121 ILELEKDNVYNKYKDKVGQIILGEVYQVWKKEMLVLDDEGNELILPKQEQIPTDFFKKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K+ + V P ++LSRT P F+ +LF EVPEI++G++ +K V R PG RAK+A Sbjct: 181 SIKAVVIRVEMRNSNPYIILSRTSPVFLERLFENEVPEIFDGLITIKNVVRVPGERAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + ++ AL PA + + Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINYTNNLQLYITRALNPAKIKNIE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE + V + E++SLAIG+ G N++LASQLTG+ ID+ E + + + +E Sbjct: 301 IDEAHKKANVYLDPEEVSLAIGKGGLNIKLASQLTGYDIDVYRELDQAQEEDVNLDEFAD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ + L G + + + SE+ S + ET E+ + E Sbjct: 361 ------EIEGWVIDELKRVGCDTAKSVLELSESELESRTDLEIETIREVLNILKAEFE 412 >gi|260172453|ref|ZP_05758865.1| transcription elongation factor NusA [Bacteroides sp. D2] gi|315920747|ref|ZP_07916987.1| transcription elongation factor NusA [Bacteroides sp. D2] gi|313694622|gb|EFS31457.1| transcription elongation factor NusA [Bacteroides sp. D2] Length = 427 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 139/430 (32%), Positives = 245/430 (56%), Gaps = 11/430 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ + Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGIDITLQKK 427 E D +++ K Sbjct: 417 EEEDPSIENK 426 >gi|320008230|gb|ADW03080.1| NusA antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 128/344 (37%), Positives = 198/344 (57%), Gaps = 22/344 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A +K I DV++ + ++ A G+ RVE++ +G ++++ Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTEGSHRRARVELD-ASGHVTVWAK----- 59 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 ++ L+ ++ P FGR+A +AKQVI+Q++R+AE DR Sbjct: 60 --DDPAE---LEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDRT 105 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V Sbjct: 106 FGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVRV 165 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++ Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308 P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGTRSA 285 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETEAERD 329 >gi|307565711|ref|ZP_07628180.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A] gi|307345537|gb|EFN90905.1| transcription termination factor NusA [Prevotella amnii CRIS 21A-A] Length = 421 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 232/395 (58%), Gaps = 8/395 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV +E+EN Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADDELENENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++K++ Sbjct: 84 QISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKNR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I+SG V + + ++VD N++ ++ + E I R+N R G+ +++ I+ V + P Sbjct: 144 VGQIVSGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRKGETIRAVIHRVTNDNNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIKKVARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSSLTIDEETKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E +++ + + +D+ + + Sbjct: 324 VSLAIGRNGLNIKLASMLTDYTIDVFRELDENETEDDIYLDEFAD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 G ++ + +EET + Sbjct: 379 KGIGMETARQVLNAPREMLIEKADLEEETVDNVLN 413 >gi|163839410|ref|YP_001623815.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] gi|162952886|gb|ABY22401.1| transcription elongation factor [Renibacterium salmoninarum ATCC 33209] Length = 330 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 124/341 (36%), Positives = 195/341 (57%), Gaps = 24/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I + ++ + ++ A R G R EI+ ++G ++++ Sbjct: 5 MSALRLLEREREIPLEKLIPTIEQALLVAYRKSPGAFEQARAEIDRKSGHVTIWA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +I D +G P FGR+A +A+Q+I+Q++R+ E + Sbjct: 60 -------TEI-------DDDGAPVGEF---EDTPAGFGRIAASTARQIILQRLRDVEDEN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF+ K GE++SG +++ N++ V+LG +GV+ E E G R+++++ D Sbjct: 103 VLGEFRGKEGELVSGQIQQGHNPNMVQVNLGTVEGVLPPTEQSPGERYPHGSRIRAFVVD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R Q+GP + LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV + I Sbjct: 163 VHRGQKGPSITLSRSHPGLVRKLFELEVPEIADKSVEIVALAREAGHRTKIAVKAHRPGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ ++L P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASSLSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 VIVP QLSLAIG+ GQN RLA++LTGW IDII++ Sbjct: 283 ARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIISDAVAE 323 >gi|150003921|ref|YP_001298665.1| transcription elongation factor NusA [Bacteroides vulgatus ATCC 8482] gi|212692747|ref|ZP_03300875.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855] gi|237709443|ref|ZP_04539924.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA] gi|237724957|ref|ZP_04555438.1| transcription elongation factor NusA [Bacteroides sp. D4] gi|254880838|ref|ZP_05253548.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA] gi|265754642|ref|ZP_06089694.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA] gi|294775077|ref|ZP_06740606.1| transcription termination factor NusA [Bacteroides vulgatus PC510] gi|319639848|ref|ZP_07994577.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A] gi|149932345|gb|ABR39043.1| putative nitrogen utilization substance protein [Bacteroides vulgatus ATCC 8482] gi|212664683|gb|EEB25255.1| hypothetical protein BACDOR_02245 [Bacteroides dorei DSM 17855] gi|229436695|gb|EEO46772.1| transcription elongation factor NusA [Bacteroides dorei 5_1_36/D4] gi|229456499|gb|EEO62220.1| transcription elongation factor NusA [Bacteroides sp. 9_1_42FAA] gi|254833631|gb|EET13940.1| transcription elongation factor NusA [Bacteroides sp. 4_3_47FAA] gi|263234756|gb|EEZ20324.1| transcription termination factor NusA [Bacteroides sp. 3_1_33FAA] gi|294451121|gb|EFG19592.1| transcription termination factor NusA [Bacteroides vulgatus PC510] gi|317388512|gb|EFV69362.1| hypothetical protein HMPREF9011_00174 [Bacteroides sp. 3_1_40A] Length = 418 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 137/422 (32%), Positives = 238/422 (56%), Gaps = 11/422 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEVGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ D+VG +IS V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSLYNKYIDRVGTVISAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +VL E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++S + + + Sbjct: 302 SIVLHEEEKKAEVYLKPEEVSLAIGKGGMNIKLASMLTEYTIDVYRELDESAMDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +DE + + G + + + +E T ++ R Sbjct: 362 EFKD-----EIDEWVITAIKNIGLDTAKAVLNAPREMLIEKADLEENTVDDVLRVLRAEF 416 Query: 418 EG 419 E Sbjct: 417 EE 418 >gi|83815918|ref|YP_445895.1| transcription elongation factor NusA [Salinibacter ruber DSM 13855] gi|83757312|gb|ABC45425.1| N utilization substance protein A [Salinibacter ruber DSM 13855] Length = 546 Score = 285 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 144/427 (33%), Positives = 230/427 (53%), Gaps = 12/427 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ +A K +DRD + ++ D + R YG+ + NP+ GDI + + E Sbjct: 5 DLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQE 64 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EVE+ +I A+ D +G V+ L +FGR AV +A+Q Q++R+ Sbjct: 65 VVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++ Y E+ + +G+I+ G + +V ++ +++ V+ RDE I ++ R G+ +++ Sbjct: 125 EKEQVYQEYTELIGDIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTV 184 Query: 186 IYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VRR+ PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S Sbjct: 185 VKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +DPVGACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L D Sbjct: 245 DEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED R V VP +++S AIG+RG N++LASQLTG+ ID+ E Sbjct: 305 EDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYREIPADEED-------IDIE 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + E L G + + + +A D +TA ++ E Sbjct: 358 QFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLEIIETEFEKGPG 417 Query: 423 TLQKKIR 429 ++ + Sbjct: 418 IIESIRQ 424 >gi|29348812|ref|NP_812315.1| transcription elongation factor NusA [Bacteroides thetaiotaomicron VPI-5482] gi|253568843|ref|ZP_04846253.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6] gi|298387892|ref|ZP_06997441.1| transcription termination factor NusA [Bacteroides sp. 1_1_14] gi|29340718|gb|AAO78509.1| putative nitrogen utilization substance protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840862|gb|EES68943.1| transcription elongation factor NusA [Bacteroides sp. 1_1_6] gi|298259299|gb|EFI02174.1| transcription termination factor NusA [Bacteroides sp. 1_1_14] Length = 439 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 136/413 (32%), Positives = 238/413 (57%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLTEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409 >gi|188996513|ref|YP_001930764.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931580|gb|ACD66210.1| NusA antitermination factor [Sulfurihydrogenibium sp. YO3AOP1] Length = 371 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 146/365 (40%), Positives = 220/365 (60%), Gaps = 19/365 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLFRLL 66 L + + ++ EK+I DV+ + D I A + + +++ + E ++ + Sbjct: 5 LKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKVLIKK 64 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V VE+ T +I+L+ A++ DP+ D G V PL D GR+A+ AK+VI +KV + E Sbjct: 65 KVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKVSKVE 124 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 RD Y EFKD G+II+GTV+R E ++IVDLG + ++ ++E I +E + GDR+++ + Sbjct: 125 RDILYREFKDYEGKIITGTVRRFEGDDIIVDLGRIEAILPKEEQIPKEKYKIGDRIRALV 184 Query: 187 YDVRREQRGPQVL-----------------LSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 V +E P + LSRTHP F+ KL +EVPEI G ++VKAV Sbjct: 185 LKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEIEVKAV 244 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +R+PG RAK+AV+S D +IDPVG VG++GSR+ V +EL EKID++ W D A F+I Sbjct: 245 AREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPAKFIIR 304 Query: 290 ALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 AL PA K L RIE+ VP+E+LSLAIG+ G N +LA +LTGW IDI++EE+ Sbjct: 305 ALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSEEDFER 364 Query: 350 NRQKD 354 ++ Sbjct: 365 IQKLP 369 >gi|317504200|ref|ZP_07962194.1| transcription elongation factor NusA [Prevotella salivae DSM 15606] gi|315664689|gb|EFV04362.1| transcription elongation factor NusA [Prevotella salivae DSM 15606] Length = 421 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 134/421 (31%), Positives = 233/421 (55%), Gaps = 8/421 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + + + L+ K+IDR ++SV+ +S + ++G+ + V +NP+ GD Sbjct: 6 IEEDSISLIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65 Query: 62 LFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++R VV + VE+ Q++L AR +P ++G VS+ + FGR A+ + +Q + Sbjct: 66 IYRNRIVVADGEVEDENKQVALTEARKIEPDYEVGEEVSEQVNFAKFGRRAILNLRQTLA 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRP 178 K+ E E D Y ++KD+VG+IISG V + + ++VD N++ ++ + E I + R Sbjct: 126 SKILELEHDTLYNKYKDRVGQIISGEVYQIWKREVLVVDDENNELILPKSEQIPADVYRK 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G+ V++ I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK Sbjct: 186 GETVRAVILRVDNENNNPKIILSRTSPLFLERLLEAEVPEINDGLIAIRKIARMPGERAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V+ Sbjct: 246 IAVESFDDRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTSNINLFIQRALSPARVSS 305 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + +D++ + EV + E++SLAIGR G N++LAS LT +TID+ E + + + + Sbjct: 306 INIDQENHKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVFREVPEGEADEDIYLDE 365 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +D+ + + + G + + + +EET + R E Sbjct: 366 FSD-----EIDQWVIEAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDHVINVLRAEFE 420 Query: 419 G 419 Sbjct: 421 Q 421 >gi|304383857|ref|ZP_07366314.1| transcription termination factor NusA [Prevotella marshii DSM 16973] gi|304334935|gb|EFM01208.1| transcription termination factor NusA [Prevotella marshii DSM 16973] Length = 420 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 141/393 (35%), Positives = 227/393 (57%), Gaps = 8/393 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R VV + V++ Sbjct: 24 KNIDRTTLVSVLEESFRNVIAKLFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVQDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A+ + +IG VS+P+ FGR AV + +Q + KV E E D Y ++KD+ Sbjct: 84 EISLSEAQKIEKDYEIGEEVSEPVDFAKFGRRAVLNLRQTLASKVLELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + +IVD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIISGEVYQVWKREVLIVDDENNELILPKSEQIPADQYRKGETIRTVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ V+ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLQRLLEAEVPEIGDGLITVRKIARIPGERAKVAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVYELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEENRKAEVFLKPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E ED + + + +D+ I + Sbjct: 324 VSLAIGRSGMNIKLASMLTEYTIDVFREIEDGDIDEDIYLDEFSD-----EIDKWIIDSI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409 A G + + + +EET + Sbjct: 379 KAIGLDTAKAVINAPREMLVEKADLEEETVDNV 411 >gi|298480547|ref|ZP_06998744.1| transcription termination factor NusA [Bacteroides sp. D22] gi|295086245|emb|CBK67768.1| transcription termination factor NusA [Bacteroides xylanisolvens XB1A] gi|298273368|gb|EFI14932.1| transcription termination factor NusA [Bacteroides sp. D22] Length = 426 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 137/430 (31%), Positives = 241/430 (56%), Gaps = 11/430 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ + Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGIDITLQKK 427 E + Sbjct: 417 EEEGENSVEN 426 >gi|288928619|ref|ZP_06422465.1| transcription termination factor NusA [Prevotella sp. oral taxon 317 str. F0108] gi|288329603|gb|EFC68188.1| transcription termination factor NusA [Prevotella sp. oral taxon 317 str. F0108] Length = 422 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 140/427 (32%), Positives = 239/427 (55%), Gaps = 14/427 (3%) Query: 1 MVSANRLE-LLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP 55 MV+ + E +L + D E K+IDR ++SV+ +S + ++G+ + V +NP Sbjct: 1 MVARKKDENILSMVDTF-KEFKDTKNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNP 59 Query: 56 ETGDISLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 + GD ++R VV + VE+ QI+L A+ +P ++G V++ + FGR A+ + Sbjct: 60 DKGDFEIYRNRMVVADGEVEDENKQIALAEAQKIEPDYEVGEEVTERVDFAKFGRRAILT 119 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETIS 172 +Q + K+ E E D Y ++KD+VG++I+G V + + +IVD N++ ++ + E I Sbjct: 120 LRQTLASKILELEHDSLYNKYKDRVGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIP 179 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 + R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R Sbjct: 180 ADQYRKGETIRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKRIARM 239 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 PG RAK+AV S D IDPVGACVG+RGSRV +V EL +E ID++ ++ ++ F+ AL Sbjct: 240 PGERAKIAVESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVINYTANTKLFIQRALS 299 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+ + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + + Sbjct: 300 PAQVSSINIDEETRKAEVFLRPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVAEGEADE 359 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 + + VD+ + + + G + + + +EET + Sbjct: 360 DIYLDEFSD-----EVDQWVIDAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDNLLRV 414 Query: 413 AREYLEG 419 R E Sbjct: 415 LRAEFEQ 421 >gi|153809150|ref|ZP_01961818.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185] gi|149128126|gb|EDM19346.1| hypothetical protein BACCAC_03460 [Bacteroides caccae ATCC 43185] Length = 430 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 135/413 (32%), Positives = 238/413 (57%), Gaps = 11/413 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QI+L A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQIALSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + +D + + A G + + + +EET E+ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVI 409 >gi|288925326|ref|ZP_06419260.1| transcription termination factor NusA [Prevotella buccae D17] gi|288337797|gb|EFC76149.1| transcription termination factor NusA [Prevotella buccae D17] Length = 421 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 135/414 (32%), Positives = 232/414 (56%), Gaps = 8/414 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R V Sbjct: 13 MIDTFREFKETKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVV 72 Query: 69 VEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 V + VE+ +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E Sbjct: 73 VADGEVEDENKEICLTEAQKIEPDYEVGEDVSEKVDFNKFGRRAILTLRQTLASKILELE 132 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 D Y ++KD+VG++ISG V ++ V IVD N++ ++ + E I + R G+ V++ Sbjct: 133 HDSLYNKYKDRVGQVISGEVYQMWKREVLIVDDENNELILPKAEQIPADQYRKGETVRAV 192 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D Sbjct: 193 ILRVDNENNNPKIILSRTSPMFLERLLEAEVPEISDGLIAIRKIARMPGDRAKVAVESFD 252 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + +DE+ Sbjct: 253 ERIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVSSINIDEEN 312 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + EV + E++SLAIGR G N++LAS LT +TID+ E +++ + + E Sbjct: 313 HKAEVYLQPEEVSLAIGRGGMNIKLASMLTEYTIDVFREIDENAADEDIYLEEFSD---- 368 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + + + G +++ + +EET + R E Sbjct: 369 -EIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNVLNVLRAEFEQ 421 >gi|302344943|ref|YP_003813296.1| transcription termination factor NusA [Prevotella melaninogenica ATCC 25845] gi|302149887|gb|ADK96149.1| transcription termination factor NusA [Prevotella melaninogenica ATCC 25845] Length = 409 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 230/403 (57%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+ Sbjct: 12 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 71 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 72 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 131 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + ++VD N++ ++ + E I R+ R G+ V++ I+ V E P Sbjct: 132 VGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAVIHRVDNENNNP 191 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 192 KIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 251 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 252 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 311 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + + Sbjct: 312 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 366 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 G ++ + + ET + R E Sbjct: 367 KGIGLDTARQVLNAPREMLIEKADLEVETVDSVLNVLRSEFEQ 409 >gi|294507805|ref|YP_003571863.1| transcription factor [Salinibacter ruber M8] gi|294344133|emb|CBH24911.1| transcription factor [Salinibacter ruber M8] Length = 536 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 145/427 (33%), Positives = 230/427 (53%), Gaps = 12/427 (2%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L+ +A K +DRD + ++ D + R YG+ + NP+ GDI + + E Sbjct: 5 DLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHIQE 64 Query: 68 VV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV EVE+ +I A+ D +G V+ L +FGR AV +A+Q Q++R+ Sbjct: 65 VVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIRDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+++ Y E+ + +GEI+ G + +V ++ +++ V+ RDE I ++ R G+ +++ Sbjct: 125 EKEQVYQEYTELIGEIVVGEIYQVRRHETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTV 184 Query: 186 IYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VRR+ PQV++SRT P FM +LF +EVPE+++GIV++K V+R PG RAK+AV S Sbjct: 185 VKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESH 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--D 302 D +DPVGACVG++G R+ AVV EL DE ID++ WS D + AL PA T V L D Sbjct: 245 DEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSLNQD 304 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 ED R V VP +++S AIG+RG N++LASQLTG+ ID+ E Sbjct: 305 EDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYREIPADEED-------IDIE 357 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + E L G + + + +A D +TA ++ E Sbjct: 358 QFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLEIIETEFEKGPG 417 Query: 423 TLQKKIR 429 ++ + Sbjct: 418 IIESIRQ 424 >gi|152965409|ref|YP_001361193.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216] gi|151359926|gb|ABS02929.1| NusA antitermination factor [Kineococcus radiotolerans SRS30216] Length = 339 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 128/344 (37%), Positives = 191/344 (55%), Gaps = 28/344 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMS----DIRVEINPETGDISLFRL 65 + + E+ I + ++ + ++ A D RVE++ +G++ + Sbjct: 5 MAALRMLEREREIPFETLVRTIEQALLVAYHRTEHEDHKAHPDARVELDRASGEVRVLAK 64 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 D + +G P FGR+A +A+QVI+Q++R+A Sbjct: 65 -------------------ERDDAGLVVGEF---DDTPSGFGRIAATTARQVILQRLRDA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E D E+ GEI+SG V++ + V VDLG+ +GV+ E + E G R++ Sbjct: 103 EDDAVIGEYAQTEGEIVSGVVQQGRDPRMVQVDLGSLEGVLPPQEQVPGEKYEHGSRLRC 162 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ V++ +GPQV+LSR+HPQ + KLF +EVPEI +G VQ+ A+SR+ G R+K+AV ++ Sbjct: 163 FVVSVKKGPKGPQVVLSRSHPQLVKKLFALEVPEIADGTVQITALSREAGHRSKMAVRAT 222 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDE 303 ++ GAC+G G RV+AV+ ELR EKIDIV S D A FV NAL PA V+ V +D Sbjct: 223 RGGVNAKGACIGPMGQRVRAVMAELRGEKIDIVDHSDDPAQFVGNALSPARVSSVEVVDL 282 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 283 AARSARVIVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDTEP 326 >gi|319900402|ref|YP_004160130.1| NusA antitermination factor [Bacteroides helcogenes P 36-108] gi|319415433|gb|ADV42544.1| NusA antitermination factor [Bacteroides helcogenes P 36-108] Length = 421 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 138/425 (32%), Positives = 241/425 (56%), Gaps = 11/425 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV + VEN QI L AR D S ++G V+D + +FGR A+ + +Q + Sbjct: 62 EIWRNREVVADADVENSNLQIPLSEARKIDASYEVGEEVTDEVIFANFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKIMELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPIFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E + ++ + + + Sbjct: 302 SIRLNEEEHKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDQAVEDEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ ++ Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVLRILKQEF 416 Query: 418 EGIDI 422 E + Sbjct: 417 EEEEQ 421 >gi|309811468|ref|ZP_07705250.1| transcription termination factor NusA [Dermacoccus sp. Ellin185] gi|308434519|gb|EFP58369.1| transcription termination factor NusA [Dermacoccus sp. Ellin185] Length = 339 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 125/342 (36%), Positives = 195/342 (57%), Gaps = 18/342 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ E+ I DV++ + ++ A + G+ RVE++ TG + ++ Sbjct: 5 MAALRALEREREIPMDVIVPAIEQALLLAYQKEEGSYRRARVELDRRTGHVVVWAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ Q + +P + P +FGRVA +A+QVI+Q++R+ E + Sbjct: 61 ---EDGEKQ---EDGTWSEPGPEFDDT------PKNFGRVAAGTARQVIMQRMRDVEDEA 108 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +F K G+I+SGT+++ + V VD G +G++ E + E R G+R++ Y+ Sbjct: 109 ILGDFIGKEGDIVSGTIQQSLDSRFVKVDFGTVEGILPTAEQVPGETYRHGERLRCYVVS 168 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VRR +GPQ+ LSRTHP + KLF MEVPEI +G V++ A++R+ G R K+AV ++ I Sbjct: 169 VRRGPKGPQISLSRTHPNLVRKLFAMEVPEIADGSVEIAALAREAGHRTKIAVHATKPGI 228 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+AV++EL+ EKIDIV +S F+ AL P+ V V +D Sbjct: 229 NAKGACIGPMGQRVRAVMSELQGEKIDIVDYSRQPDEFIAAALSPSRVESVEVVDPKARA 288 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 289 ARVVVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRPDTALAD 330 >gi|160883929|ref|ZP_02064932.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483] gi|237720417|ref|ZP_04550898.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4] gi|299147096|ref|ZP_07040163.1| transcription termination factor NusA [Bacteroides sp. 3_1_23] gi|156110659|gb|EDO12404.1| hypothetical protein BACOVA_01903 [Bacteroides ovatus ATCC 8483] gi|229450168|gb|EEO55959.1| transcription elongation factor NusA [Bacteroides sp. 2_2_4] gi|298514981|gb|EFI38863.1| transcription termination factor NusA [Bacteroides sp. 3_1_23] Length = 431 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 139/432 (32%), Positives = 245/432 (56%), Gaps = 11/432 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV E++ N QISL A+ D S + G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEDLTNPNMQISLSEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG II+ V + + +++D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF MEVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + + F+ AL PA ++ Sbjct: 242 KIAVESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKIS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + L+E+ + EV + E++SLAIG+ G N++LAS LT +TID+ E ++++ + + + Sbjct: 302 SIRLNEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELDENVADEDIYLD 361 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + +D + + A G + + + +EET E+ + Sbjct: 362 EFRD-----EIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEVIRILKSEF 416 Query: 418 EGIDITLQKKIR 429 E D +++ K Sbjct: 417 EEEDPSIENKDE 428 >gi|281424957|ref|ZP_06255870.1| transcription termination factor NusA [Prevotella oris F0302] gi|281400801|gb|EFB31632.1| transcription termination factor NusA [Prevotella oris F0302] Length = 421 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 137/423 (32%), Positives = 233/423 (55%), Gaps = 13/423 (3%) Query: 4 ANRLELLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD 59 N E + + D E K+IDR ++SV+ +S + ++G+ + V +NP+ GD Sbjct: 5 KNEEEQISMIDTF-REFKDTKNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGD 63 Query: 60 ISLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 ++R VV + VE+ QI+L A +P +IG VS+ + FGR A+ + +Q Sbjct: 64 FEIYRNRVVVADGEVEDENKQIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQT 123 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176 + K+ E E D Y ++KD+VG+I+SG V + + ++VD N++ ++ + E I + Sbjct: 124 LASKILELEHDTLYNKYKDRVGQIVSGEVYQIWKREVLVVDDENNELILPKSEQIPADVY 183 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ ++ ++R PG R Sbjct: 184 RKGETIRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGER 243 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D IDPVGACVG++GSRV +V EL +E +D+V ++ + F+ AL PA V Sbjct: 244 AKIAVESFDDRIDPVGACVGVKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARV 303 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + + + Sbjct: 304 SSINIDEENHKAEVYLQPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVPEGEADEDIYL 363 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + +D+ + + + G + + + +EET + R Sbjct: 364 DEFSD-----EIDQWVIDAIKSIGLDTAKAVLNAPREMLIEKADLEEETVDHVINVLRAE 418 Query: 417 LEG 419 E Sbjct: 419 FEQ 421 >gi|323343775|ref|ZP_08084002.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269] gi|323095594|gb|EFZ38168.1| transcription elongation factor NusA [Prevotella oralis ATCC 33269] Length = 421 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 136/403 (33%), Positives = 232/403 (57%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYTC 77 K+IDR ++SV+ +S + +YG+ + V +NP+ GD ++R VV + E + Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGDFEIYRNRMVVADGEVADENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+LK A+ +P +IG VS+P+ FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EIALKEAQKIEPDYEIGEEVSEPVNFAKFGRRAILNLRQTLASKVLELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG++ISG V + + ++VD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQVISGEVYQIWKREVLVVDDENNELILPKSEQIPSDQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA VT + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNVKLFIQRALSPAKVTSITVDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ +++ + + + + +D+ + + Sbjct: 324 VSLAIGRSGLNIKLASMLTEFTIDVFRVLDENEDNEDIYLDEFAD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 A G +++ + +EET + + E Sbjct: 379 KAIGLDTAKQVLNAPREMLIEKADLEEETVDNLLRVLKAEFEQ 421 >gi|91217187|ref|ZP_01254149.1| transcription elongation factor NusA [Psychroflexus torquis ATCC 700755] gi|91184787|gb|EAS71168.1| transcription elongation factor NusA [Psychroflexus torquis ATCC 700755] Length = 411 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 123/406 (30%), Positives = 223/406 (54%), Gaps = 14/406 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ D + A + +G + + INP+ GD+ ++ Sbjct: 1 MENIDLINSFSEFKDDKLIDRVTLMAILEDVFRNALKKKFGQDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +ISLK AR +P ++G VS+ + GR A+ + +Q +I K Sbjct: 61 RNRNVVNDGEVEDENKEISLKDARKIEPDFEVGEDVSEEVKLYQLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + + F+D +GEI + V V + VI +D ++ +I ++ I + R GD Sbjct: 121 IHEHDSTNTFKYFQDLIGEIYTAEVHHVRHNVVILLDDDGNELIIPKEHQIPSDFYRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 ++ I V + P ++LSRT P+F+ KLF E+PE+++G++ VK R PG +AK+A Sbjct: 181 SIRGVIEKVELKGNKPIIILSRTTPKFLEKLFEQEIPEVFDGLITVKNAVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA + + Sbjct: 241 VDTYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNPQLYIQRALSPAKIVNIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L+E+ EV + E++S AIGR G N+RLA LTG+ I++ + + + + Sbjct: 301 LNEEKKYAEVTLKPEEVSKAIGRGGHNIRLAGLLTGYNIEVFRDGIEEEDVELTEFTD-- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETA 406 +++ + G + + + +S++ +EET Sbjct: 359 ------EIEDWVIKEFGRIGLDTAKSILELDVSDLVRRTDLEEETV 398 >gi|325962805|ref|YP_004240711.1| transcription termination factor NusA [Arthrobacter phenanthrenivorans Sphe3] gi|323468892|gb|ADX72577.1| transcription termination factor NusA [Arthrobacter phenanthrenivorans Sphe3] Length = 326 Score = 284 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 120/337 (35%), Positives = 198/337 (58%), Gaps = 24/337 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ + Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+++ I P FGR+A +A+Q+I+Q++R+ E D Sbjct: 61 -EIDDDGAPIG-----------------EFEHTPEGFGRIAASTARQIILQRLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFK + GE++SGT+++ ++I V+LG+ + ++ E + E G+R+++ + D Sbjct: 103 VLGEFKGREGELVSGTIQQGNNPHMIQVNLGSVEALLPPPEQVPGEKYIHGNRLRALVID 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP V LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ I Sbjct: 163 VHRGSKGPSVTLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANVPGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S + ATF+ +AL P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSENPATFIASALSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSD 319 >gi|327403853|ref|YP_004344691.1| NusA antitermination factor [Fluviicola taffensis DSM 16823] gi|327319361|gb|AEA43853.1| NusA antitermination factor [Fluviicola taffensis DSM 16823] Length = 411 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 135/409 (33%), Positives = 230/409 (56%), Gaps = 10/409 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N LEL++ KSID+ + V+ D + + + T I V +N + GD+ +F Sbjct: 1 MNSLELVESFSEFKELKSIDKQTMQHVLEDVFRAMLKKKFNTDEHIDVIVNIDKGDVQIF 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 E+V + VE+ +I+ A +P +IG VS+ DFGR + S +Q +I + Sbjct: 61 VNKEIVADGEVEDQNTEIAYSDAIKIEPDFEIGEEVSEEFRFNDFGRRNILSLRQNLISR 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E E+D Y ++K+++GEII+G V +V ++V D N++ ++ + E I + + G+ Sbjct: 121 ILELEKDHLYKKYKERIGEIITGEVYQVWKKEIMVLDDENNELILPKSEQIPSDYFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ + V P ++LSR P+F+ +LF +EVPE+++G++ +K + R+PG RAK+A Sbjct: 181 SIRAVVSKVDMRNSSPVIILSRIAPEFLERLFELEVPEVFDGLITIKRIVREPGERAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V ELR+E ID++ ++ + F+ AL PA +T + Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHGIVRELRNENIDVINFTSNPKLFIQRALSPAKITNIE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ R V + +Q+SLAIG+ G N+RLA +LTG+ ID+ + E Sbjct: 301 IDEEQKRASVFLKPDQVSLAIGKGGYNIRLAGKLTGFEIDVFRDGESDNED-------VD 353 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 A +D I L A G + + + ++++ +EET E+ Sbjct: 354 LEEFADEIDSWILDELKAVGCDTAKSVLELTVADLVQRTDLEEETVQEV 402 >gi|189459826|ref|ZP_03008611.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136] gi|189433436|gb|EDV02421.1| hypothetical protein BACCOP_00456 [Bacteroides coprocola DSM 17136] Length = 418 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 132/393 (33%), Positives = 228/393 (58%), Gaps = 8/393 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV + E N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADDELTNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ DK Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDK 140 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG II+ V ++ +++ D ++ ++ + E I + R G+ V++ + V + P Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGNELLLPKTEQIPSDFYRKGETVRAVVARVDNKNNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIILSRTSPMFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDERIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSR+ +V ELR+E ID++ ++ + FV AL PA V+ +++ E+ + EV + E+ Sbjct: 261 VKGSRIHGIVRELRNENIDVINYTSNIQLFVQRALSPAKVSSIIMHEEEKKAEVYLKPEE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIG+ G N++LAS LT +TID+ E +++ + + + + +DE + + + Sbjct: 321 VSLAIGKGGMNIKLASMLTEYTIDVYRELDENATDEDIYLDEFKD-----EIDEWVINAI 375 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEI 409 G + + + +E T ++ Sbjct: 376 KGIGIDTAKGVLNAPREMLIEKADLEENTVDDV 408 >gi|320334652|ref|YP_004171363.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211] gi|319755941|gb|ADV67698.1| NusA antitermination factor [Deinococcus maricopensis DSM 21211] Length = 397 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 135/384 (35%), Positives = 218/384 (56%), Gaps = 2/384 (0%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + VA ++I+ ++ S+ +A + V ++P++G+I + + EVVE Sbjct: 8 EALREVAQSRNINEMQLIEAFEQSLAQAYTRNVDPDKRVEVHLDPKSGEIEVLVVKEVVE 67 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 +VE+ QISL A + DP ++G + P+ F R+A+Q+AKQ + QK+RE ER+ Sbjct: 68 KVEDENVQISLADALELDPEAELGEEMVFPVEREKFTRIALQAAKQTLTQKMRETERNVV 127 Query: 131 YLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+KDK G++++ V R++ N VDLG + ++ + E I E L PG+RVK Y+ +V Sbjct: 128 FNEYKDKEGQVLNAVVARLDNKGNYFVDLGAGEAILPQREAIPGERLMPGNRVKIYLKEV 187 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 R+ +GP +L SR + + L E+PE+ NGIV+VKA++R+ G R+K+AVFS + ++D Sbjct: 188 RKTPKGPTILASRADERLLDYLLKQEIPEVANGIVEVKAIAREAGQRSKVAVFSHNPNVD 247 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIE 309 P+GAC+G RG+R+QAV EL E++D+++W F+ NAL PA V + ++ D Sbjct: 248 PIGACIGHRGNRIQAVTGELGRERVDVILWDATPREFIRNALSPAKVGLIEVNADTREAT 307 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V V +QLSLAIG+ GQNVRLA++LTG+ +D+ + S A Sbjct: 308 VTVTPDQLSLAIGKGGQNVRLAAKLTGYKVDLRETQAVSDLDAAMQQALEDEGSNASESS 367 Query: 370 EIIAHLLVAEGFADVEELACVKIS 393 F D + +A Sbjct: 368 SSARAA-FDALFRDSKSVATATPD 390 >gi|118587523|ref|ZP_01544947.1| transcription termination protein NusA [Oenococcus oeni ATCC BAA-1163] gi|118431974|gb|EAV38716.1| transcription termination protein NusA [Oenococcus oeni ATCC BAA-1163] Length = 473 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 140/439 (31%), Positives = 224/439 (51%), Gaps = 6/439 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE + Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +L ++ EV+ + + + +I LK AR+ + + + G + + P DFGR+A QS K Sbjct: 61 NLLQIKEVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKS 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLR 177 Q +RE E++ + ++ EI+S V R + + V + + + + I E + Sbjct: 121 TQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYK 180 Query: 178 PGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G R Sbjct: 181 TGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV ++DS++DPVG VG RGSRVQAVV EL E +DIV W D A ++ NAL PA V Sbjct: 241 SKVAVRTTDSNLDPVGTLVGPRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEV 300 Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + Q Sbjct: 301 VDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAENDPQLQA 360 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 E D E A + FD + A E Sbjct: 361 ILEESAKYAEEEDQSDETDE-TDEALEDETEYADANEYFSEGADQFDASEEEKTSESAEE 419 Query: 416 YLEGIDITLQKKIRELGVS 434 + + + K + Sbjct: 420 SSSAEEDSSKAKAKMTEAE 438 >gi|182435606|ref|YP_001823325.1| transcription elongation factor NusA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776240|ref|ZP_08235505.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|178464122|dbj|BAG18642.1| putative transcriptional termination/antitermination factor [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656573|gb|EGE41419.1| NusA antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 346 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 198/345 (57%), Gaps = 22/345 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A +K I DV++ + ++ A G+ RVE++ G ++++ Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTDGSHRRARVELD-ANGHVTVWAK----- 59 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D+ Sbjct: 60 --EDPA---DLEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDKT 105 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V Sbjct: 106 FGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKMEAMLPVQEQVPGEEYVHGLRLRTYVVRV 165 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++ Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308 P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSEDPAEMVANALSPARVSKVEVVDLGARSA 285 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+ Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEEREN 330 >gi|239944687|ref|ZP_04696624.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] gi|239991150|ref|ZP_04711814.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 11379] gi|291448148|ref|ZP_06587538.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] gi|291351095|gb|EFE77999.1| transcription elongation factor NusA [Streptomyces roseosporus NRRL 15998] Length = 346 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 199/345 (57%), Gaps = 22/345 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A +K I DV++ + ++ A G+ RV+++ E G ++++ Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTDGSYRRARVKLD-ENGHVTVWAK----- 59 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ L+ ++ P FGR+A +AKQVI+Q++R+AE D+ Sbjct: 60 --EDPA---DLEEGQEPK---------EFDDTPSGFGRIAATTAKQVILQRLRDAEDDKT 105 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V Sbjct: 106 FGEYAGHEGDVVTGVVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVRV 165 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++ Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308 P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGARSA 285 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+ Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEEREN 330 >gi|256820092|ref|YP_003141371.1| transcription elongation factor NusA [Capnocytophaga ochracea DSM 7271] gi|256581675|gb|ACU92810.1| NusA antitermination factor [Capnocytophaga ochracea DSM 7271] Length = 410 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 128/418 (30%), Positives = 228/418 (54%), Gaps = 12/418 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K Sbjct: 61 RNRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKIDDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 121 IHEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINRVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ VV Sbjct: 241 VDSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + + Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEED--------IE 352 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYL 417 ++E + L G + + + ++ +EET E ++ A E+ Sbjct: 353 LSEFNDEIEEWVIEELQKAGLDTAKSVLELSAEDLMQRTDLEEETVNEVLRILAEEFE 410 >gi|299142250|ref|ZP_07035383.1| transcription termination factor NusA [Prevotella oris C735] gi|298576339|gb|EFI48212.1| transcription termination factor NusA [Prevotella oris C735] Length = 421 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 227/403 (56%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV + VE+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QI+L A +P +IG VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 QIALGEALKIEPDYEIGEEVSEQVNFAKFGRRAILNLRQTLASKILELEHDTLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+I+SG + + + ++VD N++ ++ + E I + R G+ +++ I V E P Sbjct: 144 VGQIVSGEIYQIWKREVLVVDDENNELILPKSEQIPADVYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E +D+V ++ + F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENLDVVNYTTNINLFIQRALSPARVSSINIDEENHKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E + + + + +D+ + + Sbjct: 324 VSLAIGRGGLNIKLASMLTEYTIDVFREVPEGEADEDIYLDEFSD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + G + + + +EET + R E Sbjct: 379 KSIGLDTAKAVLNAPREMLIEKADLEEETVDHVINVLRAEFEQ 421 >gi|116669975|ref|YP_830908.1| NusA antitermination factor [Arthrobacter sp. FB24] gi|116610084|gb|ABK02808.1| NusA antitermination factor [Arthrobacter sp. FB24] Length = 326 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 122/344 (35%), Positives = 199/344 (57%), Gaps = 24/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +I D IG P FGR+A +A+Q+I+Q++R+AE D Sbjct: 60 -------TEI-------DDDGAPIGEF---EDTPAGFGRIAASTARQIILQRLRDAEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 +FK + GE+++GT+++ ++I V+LG + ++ E + E G+R+++++ D Sbjct: 103 VLGQFKGREGELVAGTIQQGNNPHMIQVNLGTVEALLPPPEQVPGEKYIHGNRLRAFVID 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP + LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ I Sbjct: 163 VHRGTKGPSITLSRSHPGLVRKLFELEVPEIADRSVEIVALAREAGHRTKIAVKANIPGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S D ATF+ +AL P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSEDPATFIASALSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ S Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSDAAVSREN 326 >gi|146299389|ref|YP_001193980.1| transcription elongation factor NusA [Flavobacterium johnsoniae UW101] gi|146153807|gb|ABQ04661.1| NusA antitermination factor [Flavobacterium johnsoniae UW101] Length = 417 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 133/419 (31%), Positives = 235/419 (56%), Gaps = 8/419 (1%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + K IDR +++++ D + A + YG+ + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDNKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60 Query: 64 RLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R +V E+++ +I+L AR + +IG VS+ + +D GR A+ + +Q +I K Sbjct: 61 RRRVIVADEDLDFENEEITLTEARMIEADFEIGEEVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD +G+I + V V VI VD ++ V+ +++ I + R GD Sbjct: 121 IHEHDNTNLYKQFKDIIGDIYTAEVHHVRPRVVILVDDEGNEIVLPKEKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + PQ+++SRT +F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPQIIMSRTSEKFLEKLFEQEIPEVFDGLITVKNVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V+ + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNIQLFITRALSPAKVSSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ R EV + E++S AIGR G N++LA QLTG+ +D+I E + + + + Sbjct: 301 IDEESKRAEVFLKLEEVSKAIGRGGHNIKLAGQLTGYELDVIREGDVAG--TVADEDDVE 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + ++E + G + + + ++ +EET +++ +E + Sbjct: 359 LTEFSDEIEEWVIEEFAKIGLDTAKSILKHDVEDLVRRTDLEEETILDVMKILKEEFDS 417 >gi|298206855|ref|YP_003715034.1| transcription elongation factor NusA [Croceibacter atlanticus HTCC2559] gi|83849489|gb|EAP87357.1| transcription elongation factor NusA [Croceibacter atlanticus HTCC2559] Length = 410 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 137/419 (32%), Positives = 234/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ + + A + +G + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKLIDRVTLMAILEEVFRSALKRKFGEDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE+ +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRVVVEDGMVEDDNSEISLTQARKIEPDFEVGEDVSEEVKLIDLGRRAILALRQNLIAK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FK+ +GE+ S V + + VI+ D ++ ++ +D I + R G+ Sbjct: 121 IHEHDNTNIYNQFKELIGEMYSAEVHHIRHRVVILLDDEGNELIMPKDRQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P ++ SRT P F+ KLF E+PE+++G++QVK V R PG +AK+A Sbjct: 181 SVRGVIESVELKGNKPAIIFSRTSPLFLEKLFEQEIPEVFDGLIQVKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + + AL PA VT V Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTSNDQLLINRALSPARVTSVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 L+ + R EV++ E++S AIGR G N+RLASQLTG+ ID+ E + K+F++ Sbjct: 301 LNSETMRAEVMLKPEEVSKAIGRGGHNIRLASQLTGYEIDVFREGVEEDVELKEFSD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D I G + + + ++ +EET E+ RE + Sbjct: 358 ------EIDAWIIAEFSKIGLDTAKAILEQDLDDLVRRTDLEEETIREVVQILREEFDQ 410 >gi|255033849|ref|YP_003084470.1| transcription elongation factor NusA [Dyadobacter fermentans DSM 18053] gi|254946605|gb|ACT91305.1| NusA antitermination factor [Dyadobacter fermentans DSM 18053] Length = 413 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 144/407 (35%), Positives = 236/407 (57%), Gaps = 10/407 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K+IDR ++SV+ + + R YGT + V INPE+GD+ ++R E+ Sbjct: 6 LIESFAEFASSKNIDRPTMISVLEEVFRTMIRKKYGTDDNFDVIINPESGDLEMWRTREI 65 Query: 69 VEEVENYTCQ---ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ + I L AR ++G V++ + ++FGR VQ+A+Q +IQK+++ Sbjct: 66 VDDNSEDIWEYNKIPLNEARKIQSDFEVGEEVAEEVKLVEFGRRLVQTARQTLIQKIKDM 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++ Y ++KD+VGE+I+G V + VI VD ++ + R E IS++ R G+ VKS Sbjct: 126 EKEIMYEKYKDQVGEMITGEVYQTLRHEVIIVDSEGNELSLPRTEQISKDRFRKGESVKS 185 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I+ V P++ LSRT P F+ +LF +E+PEIY+GI+ V+ V R+PG RAK+AV S Sbjct: 186 VIHKVEMNNGSPKITLSRTSPVFLERLFEVEIPEIYDGIISVRKVVREPGERAKVAVESY 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + + AL PA V+ + +D + Sbjct: 246 DDRIDPVGACVGMKGSRIHSIVRELGNENIDVINYTDNLELLISRALSPAKVSSMQIDRE 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R+ V + +Q+SLAIG+ GQN++LA +L G ID+ + E+ + D E + Sbjct: 306 AKRVSVFLKPDQVSLAIGKGGQNIKLAGKLVGMEIDVFRDIEEQNDEDVDLTEFSD---- 361 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +DE I L G + + + E+ +E T ++ Sbjct: 362 --EIDEWIIDELHKIGLDTAKSVLALSKEELVRRTDLEEATVEDVLD 406 >gi|260910869|ref|ZP_05917513.1| N utilization substance protein A [Prevotella sp. oral taxon 472 str. F0295] gi|260635020|gb|EEX53066.1| N utilization substance protein A [Prevotella sp. oral taxon 472 str. F0295] Length = 422 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 139/427 (32%), Positives = 238/427 (55%), Gaps = 14/427 (3%) Query: 1 MVSANRLE-LLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP 55 MV+ + E +L + D E K+IDR ++SV+ +S + ++G+ + V +NP Sbjct: 1 MVARKKDENILSMVDTF-KEFKDTKNIDRMTLVSVLEESFRNVLARIFGSDENFDVIVNP 59 Query: 56 ETGDISLFRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 + GD ++R VV + VE+ QI+L A+ + ++G V++ + FGR A+ + Sbjct: 60 DKGDFEIYRNRMVVADGEVEDENKQIALTEAQKIEHDYEVGEEVTERVDFAKFGRRAILT 119 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETIS 172 +Q + K+ E E D Y ++KD+VG++I+G V + + +IVD N++ ++ + E I Sbjct: 120 LRQTLASKILELEHDSLYNKYKDRVGQVIAGEVYQVWKREVLIVDDENNELILPKSEQIP 179 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 + R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R Sbjct: 180 ADQYRKGETIRAVILRVDNENNNPKIILSRTSPMFLERLLEAEVPEINDGLISIKRIARM 239 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 PG RAK+AV S D IDPVGACVG+RGSRV +V EL +E ID++ ++ ++ F+ AL Sbjct: 240 PGERAKIAVESYDERIDPVGACVGVRGSRVHGIVRELCNENIDVINYTANTKLFIQRALS 299 Query: 293 PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 PA V+ + +DE+ + EV + E++SLAIGR G N++LAS LT +TID+ E + + Sbjct: 300 PAQVSSINIDEENRKAEVFLHPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVAEGEADE 359 Query: 353 KDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR 412 + + VD+ + + + G + + + +EET + Sbjct: 360 DIYLDEFSD-----EVDQWVIDAIKSIGLDTAKAVLNAPREMLVEKADLEEETVDSLLRV 414 Query: 413 AREYLEG 419 R E Sbjct: 415 LRAEFEQ 421 >gi|118470868|ref|YP_886962.1| transcription elongation factor NusA [Mycobacterium smegmatis str. MC2 155] gi|118172155|gb|ABK73051.1| transcription termination factor NusA [Mycobacterium smegmatis str. MC2 155] Length = 343 Score = 283 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 133/360 (36%), Positives = 195/360 (54%), Gaps = 31/360 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G D R++I+ +TG + + Sbjct: 5 MAALHAIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR D ++ + P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 58 -------------IARQTDADGNV--LAEWDDTPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF G+I++G ++R N V+V +G S+GVI E + E GDR Sbjct: 103 VYGEFAAHEGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 IDEAGRAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPVGDADARHGAAHD 342 >gi|288801646|ref|ZP_06407088.1| transcription termination factor NusA [Prevotella melaninogenica D18] gi|288335688|gb|EFC74121.1| transcription termination factor NusA [Prevotella melaninogenica D18] Length = 421 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 137/403 (33%), Positives = 230/403 (57%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + VE+ Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + ++VD N++ ++ + E I R+ R G+ V++ I+ V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDEENNELILPKGEQIPRDQYRKGETVRAVIHRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTVDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + + Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 G ++ + + ET + R E Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEVETVDSVLNVLRSEFEQ 421 >gi|315225519|ref|ZP_07867329.1| transcription termination factor NusA [Capnocytophaga ochracea F0287] gi|314944463|gb|EFS96502.1| transcription termination factor NusA [Capnocytophaga ochracea F0287] Length = 410 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 128/418 (30%), Positives = 228/418 (54%), Gaps = 12/418 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ V N QI L VAR +P ++G VS+ + D GR A+ + +Q +I K Sbjct: 61 RNRVVVEDGAVTNDNQQIELSVARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 121 IHEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPLFLERLFEQEIPEIADGLITINKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RGSR+ +V EL +E ID++ ++ + + AL PA V+ V+ Sbjct: 241 VDSFDDRIDAVGACVGVRGSRIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + + Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGATEED--------IE 352 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYL 417 ++E + L G + + + E+ +EET E ++ A E+ Sbjct: 353 LSEFNDEIEEWVIEELQKAGLDTAKSVLELSAEELMQRTDLEEETVSEVLRILAEEFE 410 >gi|300727483|ref|ZP_07060874.1| transcription termination factor NusA [Prevotella bryantii B14] gi|299775186|gb|EFI71787.1| transcription termination factor NusA [Prevotella bryantii B14] Length = 420 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 135/402 (33%), Positives = 228/402 (56%), Gaps = 8/402 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD ++R VV + +E+ Sbjct: 24 KNIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIYRNRVVVADGEIEDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR +P ++G VS+ + FGR AV + +Q + K+ E E D Y ++KD+ Sbjct: 84 QISLTEARKIEPDYEVGEDVSEKVDFSKFGRRAVLNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + +IVD N++ ++ + E I + R G+ V++ I V E P Sbjct: 144 VGQIISGEVYQIWKREVLIVDDENNELILPKSEQIPADQYRKGETVRAVIARVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTSPMFLERLLEAEVPEINDGLIAIRKIARMPGERAKIAVESFDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ ++ + F+ AL PA V+ + ++E+ + EV + E+ Sbjct: 264 VKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPAKVSSININEEEKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E +++ + + +D+ + + Sbjct: 324 VSLAIGRGGLNIKLASMLTEFTIDVFREIDENEAEDDIYLDEFSD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 G ++ + +EET + + E Sbjct: 379 KGIGLDTARQVLNAPREMLVEKADLEEETVDNVINILKAEFE 420 >gi|260591778|ref|ZP_05857236.1| transcription termination factor NusA [Prevotella veroralis F0319] gi|260536062|gb|EEX18679.1| transcription termination factor NusA [Prevotella veroralis F0319] Length = 421 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 134/395 (33%), Positives = 226/395 (57%), Gaps = 8/395 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE--NYTC 77 KSIDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + E + Sbjct: 24 KSIDRTTLVSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFEIHRNRVVVADGEVKDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR + ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KD+ Sbjct: 84 EISLTDARKIEADYEVGEDVSEEVDFNKFGRRAILNLRQTLASKILELEHDSLYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IISG V + + ++VD N++ ++ + E I R+ R G+ +++ I V E P Sbjct: 144 VGQIISGEVYQTWKREVLLVDDENNELILPKGEQIPRDQYRKGETIRAVILRVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +L EVPEI G++ ++ ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIILSRTAPEFLERLLEAEVPEIAEGLIAIRKIARMPGERAKIAVESFDDRIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RGSRV +V EL +E +D++ W+ ++ F+ AL PA V+ + +DE+ + EV + E+ Sbjct: 264 VRGSRVHGIVRELCNENLDVINWTANTKLFIQRALAPAKVSSLTIDEENKKAEVYLQPEE 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LTG+TID+ E ++ + + + +D+ + + Sbjct: 324 VSLAIGRGGMNIKLASMLTGYTIDVFRELDEQNAEEDIYLDEFSD-----EIDQWVIDAI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 G ++ + +EET + Sbjct: 379 KGIGLDTARQVLNAPREMLIEKADLEEETVDNVLN 413 >gi|213962910|ref|ZP_03391170.1| transcription termination factor NusA [Capnocytophaga sputigena Capno] gi|213954567|gb|EEB65889.1| transcription termination factor NusA [Capnocytophaga sputigena Capno] Length = 410 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 126/418 (30%), Positives = 228/418 (54%), Gaps = 12/418 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N LEL++ +K I+R+ +++++ + + + YG+ + + INP+ GD+ +F Sbjct: 1 MNSLELIESFSEFKDDKLINRETLMAILEEVFRNTLKKKYGSDDNFDIIINPDKGDLQIF 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ V N QI+L AR +P ++G VS+ + D GR A+ + +Q +I K Sbjct: 61 RNRVVVEDDAVTNDNQQIALSAARKIEPDFEVGEDVSEEIKINDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y FKD +G++ + + + +I+ D ++ ++ +++ I + + G+ Sbjct: 121 IHEYDSMTIYQRFKDLIGQLYVAEIHHIRHKAIILLDDEGNEIILPKEKQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ +LF E+PEI +G++ + V R PG +AK+A Sbjct: 181 HVRGIIESVELKSTKPTIIMSRTSPVFLERLFEQEIPEIADGLITISKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D ID VGACVG+RG+R+ +V EL +E ID++ ++ + + AL PA V+ V+ Sbjct: 241 VDSFDERIDAVGACVGVRGARIHGIVRELGNENIDVLPFTNNPQLLITRALAPARVSSVI 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ R +V + E++S AIG+ G N+RLASQL+G+ ID+ E + + Sbjct: 301 INEEEKRADVYLANEEVSKAIGKSGYNIRLASQLSGYEIDVYREGVTEEDIELTEFND-- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYL 417 +++ + L G + + + E+ +EET E +Q A E+ Sbjct: 359 ------EIEQWVIEELQKAGLDTAKSVLELSAEELMQRTDLEEETVNEVLQVLAAEFE 410 >gi|325299860|ref|YP_004259777.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170] gi|324319413|gb|ADY37304.1| NusA antitermination factor [Bacteroides salanitronis DSM 18170] Length = 423 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 229/403 (56%), Gaps = 8/403 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTC 77 K+IDR ++SV+ +S + ++GT + V +NP+ GD ++R EVV E+ N Sbjct: 21 KNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWRNREVVADEDFANPNR 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QISL AR D S ++G V+D + FGR A+ + +Q + K+ E E+D Y ++ D+ Sbjct: 81 QISLTEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTLASKILELEKDSLYNKYIDR 140 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG II+ V ++ +++ D ++ ++ + E I + R G+ V++ + V + P Sbjct: 141 VGTIIAAEVYQIWKKEILLLDDEGNELLLPKAEQIPSDFYRKGETVRAVVARVDNKNNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P+F+ +LF EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIILSRTAPEFLQRLFEQEVPEINDGLITIKKIARIPGERAKIAVESYDDRIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ +V+ E+ R EV + E+ Sbjct: 261 VKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPATVSSIVMHEEEKRAEVYLKPEE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIG+ G N++LAS LT +TID+ E +++ + + + + +D + + Sbjct: 321 VSLAIGKGGMNIKLASMLTEYTIDVYREVDENAVDEDIYLDEFKD-----EIDGWVIDAI 375 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 G + + + +E T ++ + E Sbjct: 376 KGIGIETAKGVLNAPREMLIEKADLEENTVDDVLRILKAEFEE 418 >gi|332292194|ref|YP_004430803.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5] gi|332170280|gb|AEE19535.1| NusA antitermination factor [Krokinobacter diaphorus 4H-3-7-5] Length = 410 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 122/419 (29%), Positives = 226/419 (53%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +K IDR +++++ + + + +G+ + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +ISL AR + ++G VS+ + D GR ++ + +Q +I K Sbjct: 61 RNRVVVADGEVEDDNEEISLTDARKIEEDFEVGEDVSEEVKLFDLGRRSILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FK+ GE+ + V + + +I +D ++ ++ +D I + R G+ Sbjct: 121 IHEHDNTNIYKQFKELEGELYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGVIESVELKGNKPSIVMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ + ++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ + Sbjct: 301 INEENKTAQAVLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + ++ +EET +++ + E Sbjct: 361 AWV---------IEAFAKIGLDTARSVLEQDAEDLVRRTDLEEETVLDVMRILKAEFEE 410 >gi|126663078|ref|ZP_01734076.1| transcription elongation factor NusA [Flavobacteria bacterium BAL38] gi|126624736|gb|EAZ95426.1| transcription elongation factor NusA [Flavobacteria bacterium BAL38] Length = 413 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 135/418 (32%), Positives = 237/418 (56%), Gaps = 12/418 (2%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ D + A + YG+ + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGSDDNFDIIINPDKGDMEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE+ +ISL AR +P ++G VS+ + + GR A+ S +Q +I K Sbjct: 61 RNRVVVEDGEVEDPNSEISLTEARRIEPDFEVGEDVSEEVKLIQLGRRAILSLRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD +G+I + V V VI+ D ++ V+ +++ I + + GD Sbjct: 121 IHEHDNTNLYKQFKDLIGDIYTAEVHHVRPKAVILMDDEGNEIVLPKEKQIPNDYFKKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I +V + PQ+++SRT P+F+ KLF E+PE+++G++ +K V R PG +AK+A Sbjct: 181 NVRGVIENVELKGNKPQIIMSRTAPEFLEKLFEQEIPEVFDGLITIKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ ++ ++ AL PA V+ V Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINFTTNAQLYITRALSPAKVSTVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ EV + E++S AIGR G N++LAS LTG+ ID+I E + E + Sbjct: 301 INEEAKTAEVFLKIEEVSKAIGRGGNNIKLASLLTGYEIDVIREGIAQEEDDVELREFSD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 ++ I G + ++++ +EET +++ +E LE Sbjct: 361 ------EIEAWIIEEFEKIGLDTARSVLNQDVADLVRRTDLEEETILDVINILKEELE 412 >gi|149370939|ref|ZP_01890534.1| transcription elongation factor NusA [unidentified eubacterium SCB49] gi|149355725|gb|EDM44283.1| transcription elongation factor NusA [unidentified eubacterium SCB49] Length = 410 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 133/419 (31%), Positives = 231/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +K IDR +++++ + + A + YG+ + + +NP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKQIDRVTLMAILEEVFRNALKKKYGSDDNFDIIVNPDKGDLEIW 60 Query: 64 RLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV +V + +ISL AR + ++G VS + MD GR ++ + +Q +I K Sbjct: 61 RNRVVVADIDVMDPNEEISLTDARKIEDDFEVGEDVSQEVKLMDLGRRSILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + VI +D ++ ++ +D I + R GD Sbjct: 121 IHEHDNTIIYKQFKDMEGEIYTAEVHHIRHRAVILLDDEGNEMIMPKDRQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ + V + P +++SR P F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIVESVELKGNKPTIIMSRASPLFLEKLFEQEIPEVFDGLINVKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA VT V Sbjct: 241 VDTYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENITLFITRALSPAKVTSVK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ R EVI+ E++S AIGR G N+RLA QLTG+ ID++ E + K+F++ + Sbjct: 301 VNEENKRAEVILKPEEVSKAIGRGGHNIRLAGQLTGYEIDVLREGAEEDVELKEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + + + ++ + +EET + +E E Sbjct: 361 AWI---------IEEFHKIGLDTAKSVLEYDVKDLVNRIDLEEETIQHVIDILKEEFEE 410 >gi|297191724|ref|ZP_06909122.1| transcription elongation factor NusA [Streptomyces pristinaespiralis ATCC 25486] gi|197721420|gb|EDY65328.1| transcription elongation factor NusA [Streptomyces pristinaespiralis ATCC 25486] Length = 331 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 127/340 (37%), Positives = 193/340 (56%), Gaps = 22/340 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A EK I D+++ + ++ A G+ RV ++ TG ++++ Sbjct: 6 KLLKGLAQEKEIGFDLLVEAIESALLIAYHRTEGSRRHARVVLDRNTGHVTVWAK----- 60 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ L+ ++ P DFGR+A +A+QVI Q++R+AE D Sbjct: 61 --EDPA---DLEEGQEPK---------EFDDTPSDFGRIAATTARQVIQQRLRDAENDVT 106 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G++++G V++ + NV+V L + ++ E + E G R+++Y+ Sbjct: 107 FGEYARREGDVVAGMVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYTHGLRLRTYVVR 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 167 VARGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 +P GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV + D Sbjct: 227 NPKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEIVDLGARS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 287 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 326 >gi|120434526|ref|YP_956870.1| transcription elongation factor NusA [Gramella forsetii KT0803] gi|117576676|emb|CAL65145.1| transcription elongation protein [Gramella forsetii KT0803] Length = 410 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 233/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ D + A + YG + + +NP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGEDDNFDIIVNPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +ISL AR +P ++G VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRIVVADGEVEDDNREISLAQARKIEPDFEVGEDVSEEVKLVDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GEI + V + + +I+ D ++ V+ +D I + R G+ Sbjct: 121 IHEHDNTNIYKQFKDLEGEIYTAEVHHIRHRAIILLDDEGNEIVLPKDRQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ KLF E+PE+++G++ +K V R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPTIIMSRTAPGFLEKLFEQEIPEVFDGLITIKKVVRVPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA +T + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHSIVRELGNENIDVINFTNNEQLFITRALSPAKITSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ EV++ E++S AIGR G N+RLA QLTG+ ID+ E + K+F + Sbjct: 301 MDEEARTAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELKEFTD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + ++++ +EET ++ R E Sbjct: 358 ------EIEDWVIAEFSKIGLDTAKAVLEQDVNDLVRRTDLEEETIKDVMAVLRSEFEE 410 >gi|110639790|ref|YP_680000.1| transcription elongation factor NusA [Cytophaga hutchinsonii ATCC 33406] gi|110282471|gb|ABG60657.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406] Length = 418 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 132/409 (32%), Positives = 231/409 (56%), Gaps = 13/409 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A KSIDR ++ ++ D + R YGT + V IN + GD+ ++ + E+ Sbjct: 6 LIESFAEFAKFKSIDRPTMMKIVEDVFRTMIRKKYGTDDNFNVIINVDKGDLEIWWMREI 65 Query: 69 VEEVE-------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V + + ISL A + + G V+ + DFGR VQ+A+Q +IQK Sbjct: 66 VSDDFAEDSFDYDPNKHISLTDAHLIEKDFEEGEEVATEVKLEDFGRRMVQTARQTLIQK 125 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 V++ E+D + ++KD VGEII+G + +V +++D ++ + + E I ++ R GD Sbjct: 126 VKDLEKDNLFQKYKDLVGEIINGEIYQVLSKEILLIDADGNELALPKYEQIPKDRFRKGD 185 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ ++ V P+++LSRT P+F+ +LF +EVPE+Y+G++ ++ + R+PG RAK+A Sbjct: 186 NVRAIVHRVEMHNGNPKIILSRTSPKFLERLFELEVPEVYDGLISIRNIVREPGERAKVA 245 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + F+ AL PA ++ + Sbjct: 246 VESYDDRIDPVGACVGMKGSRIHSIVRELENENIDVINFTDNIDLFIARALSPAKISSLK 305 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++ D GR V + +Q+SLAIG+ GQN++LAS+L G ID+ E + + + Sbjct: 306 VEADKGRASVYLKPDQVSLAIGKGGQNIKLASKLVGLEIDVFRELTGNEDNEDVDLTE-- 363 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 +++ I L G + + + ++ +EET ++ Sbjct: 364 ---FVDEIEDWILEELKRIGLDTAKSVLALSKDDLVRRTELEEETVEDV 409 >gi|291543557|emb|CBL16666.1| transcription termination factor NusA [Ruminococcus sp. 18P13] Length = 353 Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 134/346 (38%), Positives = 197/346 (56%), Gaps = 4/346 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDISLFR 64 + + E S++ D+++ + ++ KA Y + ++RV+I+P T L Sbjct: 2 NNDFFAALSLLGAENSVETDLLVEKVKSAMTKAIHRAYPDSGDNVRVDIDPVTKTFDLCI 61 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + VV++ +I++ AR DPS +GG V L R A QSAKQ I +RE Sbjct: 62 IKTVVDDEPLDDNEINIDQARLIDPSAVVGGTVECKLDTASLSRNAAQSAKQSIRGDLRE 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGDRV 182 R+ +F+DK E I+ TV +VE G V L ++ + R+E I E L+ G V Sbjct: 122 ISRENLLTKFQDKENECITATVSQVEPGRGTVTLIYDKTELYLFRNEQIPGEVLKEGQSV 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K YI + +Q+ P + +SR H + +LF +EVPEIY+G V+V A+SR+ G+R K+AV Sbjct: 182 KVYITGIANKQKKPIIKISRAHRDLVKRLFELEVPEIYDGTVEVMAISREAGARTKIAVQ 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 S D ++D VGAC+G + SR+ AVV EL EKIDI+ +S F+ AL PA V V + Sbjct: 242 SHDPNVDAVGACIGPKRSRITAVVNELNGEKIDIINYSDKPEEFIAKALAPAEVLSVTIT 301 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 D + V+VP QLSLAIG RGQN +LA++LTG+ IDI E E+ Sbjct: 302 DPENRSCTVVVPNNQLSLAIGNRGQNAKLAAKLTGYKIDIKPEFEN 347 >gi|255027177|ref|ZP_05299163.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-003] Length = 301 Score = 283 bits (723), Expect = 7e-74, Method: Composition-based stats. Identities = 130/281 (46%), Positives = 190/281 (67%) Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D Sbjct: 2 LEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFID 61 Query: 137 KVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 + +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ V + +GP Sbjct: 62 REDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGP 121 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 Q+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ +DPVGACVG Sbjct: 122 QIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEEVDPVGACVG 181 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E VIVP Q Sbjct: 182 PKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQ 241 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 LSLAIG+RGQN RLA++LTGW IDI +E + N+ Sbjct: 242 LSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRND 282 >gi|163786551|ref|ZP_02180999.1| transcription elongation factor NusA [Flavobacteriales bacterium ALC-1] gi|159878411|gb|EDP72467.1| transcription elongation factor NusA [Flavobacteriales bacterium ALC-1] Length = 410 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 134/419 (31%), Positives = 232/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR +++++ D ++ A + YG + + INP+ GD+ ++ Sbjct: 1 MENVALIESFSEFKDDKLIDRVTLMAILEDVLRNALKKKYGDDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVE--EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV EVE +I L A+ +P ++G V++ + +D GR ++ + +Q +I K Sbjct: 61 RNRIVVANGEVEEPNQEIELSEAQKIEPDFEVGEDVAEEVKLIDLGRRSILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y FK+ GEI + V + + +I+ D ++ ++ +D I + R G+ Sbjct: 121 IHEHDNTNIYKHFKELEGEIYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIESVELKGSKPAIIMSRTSPLFLEKLFEQEIPEVFDGLITVKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + FV AL PA VT + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNIQLFVTRALSPARVTSLK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDE+ R EV++ E++S AIGR G N+RLA QLTG+ ID+ E + K+F++ + Sbjct: 301 LDEENMRAEVLLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVFREGAEEDVELKEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + + ++++ +EET E+ +E E Sbjct: 361 GWI---------ISEFSKAGLDTAKSILEQDVADLVKRTDLEEETIEEVIRILKEEFED 410 >gi|226306117|ref|YP_002766077.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229491401|ref|ZP_04385225.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] gi|226185234|dbj|BAH33338.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229321686|gb|EEN87483.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] Length = 343 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 131/348 (37%), Positives = 196/348 (56%), Gaps = 32/348 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ EK + + V++ + ++ A R G + R+++N +TG + + Sbjct: 5 IAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A D D + IG D P FGR+A +A+QVI+Q++R+AE + Sbjct: 59 --------------AHDTDADGNMIGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHE 102 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGD 180 R + EF GEI+ G ++R N V+V +G ++G++ E + EN G+ Sbjct: 103 RSFGEFSTHEGEIVGGVIQRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGE 162 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ V+R+ G R+K+A Sbjct: 163 RIKCYVVGVARGARGPQITLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S ++ GAC+G G RV+ V++EL EKIDI+ + D ATFV NAL P+ V V Sbjct: 223 VASRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVT 282 Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 VVDPEARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAP 330 >gi|302542143|ref|ZP_07294485.1| transcription termination factor NusA [Streptomyces hygroscopicus ATCC 53653] gi|302459761|gb|EFL22854.1| transcription termination factor NusA [Streptomyces himastatinicus ATCC 53653] Length = 330 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 122/345 (35%), Positives = 198/345 (57%), Gaps = 23/345 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RV+++ +G ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRRARVQLDRNSGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A++ ++ G P FGR+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AQEDADDLEEGEEPREFDDTPSGFGRIAAMTAKQVILQRLRDAEEE 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + N++VD+G + ++ E + E+ G R+++Y+ Sbjct: 105 ITFGEYAGREGDVVAGVVQQGKDPKNILVDIGRLEAILPSQEQVPGEDYAHGTRLRTYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 ++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDLAAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V VP QLSLAIG+ GQN RLA++LTGW IDI + + S ++ Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTDQSADQ 329 >gi|225012171|ref|ZP_03702608.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A] gi|225003726|gb|EEG41699.1| NusA antitermination factor [Flavobacteria bacterium MS024-2A] Length = 410 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 128/419 (30%), Positives = 233/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +K IDR ++ ++ D + + +G+ + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMVILEDVFKNTLKRKFGSDENFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VVE+ VE+ +I+LK AR +P ++G VS+ + +D GR +Q +Q ++ K Sbjct: 61 RNRVVVEDGMVEDPNQEIALKEARLIEPDFEVGEDVSEEVKLVDLGRRTIQYLRQNLVAK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + + +FKD+ GE+ + V + +I +D ++ ++ +D I + R GD Sbjct: 121 IFEHDSTTIFKQFKDREGELYTAEVHHIRSREIILLDDDGNEIILPKDRQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 ++ I V P+++LSRT P F+ KLF E+PE+++G++ +K R PG +AK+A Sbjct: 181 NIRGIIETVELRGNKPRIILSRTSPIFLEKLFEQEIPEVFDGLITIKKAVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + F+ AL PA V + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTNNLQLFIARALSPAKVNSLK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ R+EV + E++S AIG+ G N+RLA +LTG+ ID+ E + K+F++ + Sbjct: 301 INEETKRVEVFLNPEEVSKAIGKGGANIRLAGKLTGYEIDVFREGVEEDIELKEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + + ++ +++ +EET ++ +E E Sbjct: 361 GWI---------IEEFKKVGLDTAKSILELEKADLIKRTDLEEETVDDVLKILKEEFEE 410 >gi|108799047|ref|YP_639244.1| transcription elongation factor NusA [Mycobacterium sp. MCS] gi|119868162|ref|YP_938114.1| transcription elongation factor NusA [Mycobacterium sp. KMS] gi|126434650|ref|YP_001070341.1| transcription elongation factor NusA [Mycobacterium sp. JLS] gi|108769466|gb|ABG08188.1| NusA antitermination factor [Mycobacterium sp. MCS] gi|119694251|gb|ABL91324.1| NusA antitermination factor [Mycobacterium sp. KMS] gi|126234450|gb|ABN97850.1| NusA antitermination factor [Mycobacterium sp. JLS] Length = 347 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 131/359 (36%), Positives = 198/359 (55%), Gaps = 31/359 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G +D R++I+ ++G + + Sbjct: 5 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------ARETDADGNLIQEWDD--TPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF + G+I++G ++R N V+V +G ++GVI E + E GDR Sbjct: 103 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V + AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +DE V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + D + Sbjct: 283 IDEQTRAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQ 341 >gi|282879392|ref|ZP_06288135.1| transcription termination factor NusA [Prevotella buccalis ATCC 35310] gi|281298505|gb|EFA90931.1| transcription termination factor NusA [Prevotella buccalis ATCC 35310] Length = 421 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 141/423 (33%), Positives = 234/423 (55%), Gaps = 13/423 (3%) Query: 4 ANRLELLQIADAVAYE----KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD 59 N E + + D E K+IDR ++SV+ +S + +YG+ + V +NP+ GD Sbjct: 5 KNVEETISMIDTF-REFKDTKNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPDKGD 63 Query: 60 ISLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 ++R VV + E + +ISLK AR+ + + G VS+ + FGR A+ + +Q Sbjct: 64 FEIYRNRIVVPDGEVADENKEISLKEAREIEDDYEEGEEVSEQIDFAKFGRRAILNLRQT 123 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176 + KV E E D Y ++KD+VG++ISG V + + ++VD N++ ++ + E I + Sbjct: 124 LKSKVLELEHDSLYNKYKDRVGQVISGEVYQIWKREVLLVDDENNELILPKSEQIPADQY 183 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R G+ +++ I V E P+++LSRT P F+ +L EVPEI +G++ +K ++R PG R Sbjct: 184 RKGETIRAVILRVDNENNNPKIILSRTSPVFLERLLEAEVPEINDGLISIKKIARMPGER 243 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D IDPVGACVG++GSRV +V EL +E ID++ ++ + F+ AL PA + Sbjct: 244 AKVAVESYDDRIDPVGACVGVKGSRVHGIVRELCNENIDVINYTSNIKLFIQRALSPARI 303 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + + LDE+ + EV + E++SLAIGR G N++LAS LT +TID+ E D+ + + Sbjct: 304 SSINLDEENRKAEVYLQPEEVSLAIGRGGLNIKLASMLTEFTIDVYREVSDADADEDIYL 363 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 E +D+ I + G +++ + +EET + + Sbjct: 364 EEFND-----EIDQWIIDAIKGIGLDTAKQVLNAPREMLIEKADLEEETVDHLIRVLKSE 418 Query: 417 LEG 419 E Sbjct: 419 FEQ 421 >gi|307331528|ref|ZP_07610641.1| transcription termination factor NusA [Streptomyces violaceusniger Tu 4113] gi|306882845|gb|EFN13918.1| transcription termination factor NusA [Streptomyces violaceusniger Tu 4113] Length = 330 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 196/341 (57%), Gaps = 23/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE+N +TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTDGSRRRARVELNRDTGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 AR+ ++ G P FGR+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AREDAEDLEEGQEPREFDDTPSGFGRIAATTAKQVILQRLRDAEEE 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + NV+VD+G + ++ E + E+ G R+++Y+ Sbjct: 105 ITFGEYAGREGDVVAGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRTYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 ++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPADLVANALSPARVSKVEVVDLAAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325 >gi|298372250|ref|ZP_06982240.1| transcription termination factor NusA [Bacteroidetes oral taxon 274 str. F0058] gi|298275154|gb|EFI16705.1| transcription termination factor NusA [Bacteroidetes oral taxon 274 str. F0058] Length = 417 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 120/404 (29%), Positives = 220/404 (54%), Gaps = 9/404 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID +LS++ ++ +K ++YG+ + NP+ GD ++R VVE+ VE+ Sbjct: 20 KNIDNSTMLSILEEAFRKVISNIYGSDQNYDFIFNPDKGDFEIWRNRIVVEDDKVEDPHL 79 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL AR ++G V + + FGR AV + Q++ K+ + ++D Y ++ Sbjct: 80 EISLSDARKIADDYEVGEEVQEQVDINSFGRRAVLNLSQILSAKIVDVQKDSLYTKYSQL 139 Query: 138 VGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 +G+IIS V +V +++ D N++ ++ + + + + + G+ +++ + V P Sbjct: 140 LGQIISAEVYQVWKKEILLLDDNNNEILLPKADQLPNDFFKKGEIIRAVVARVDNNNNNP 199 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ +SRT P F+ +L EVPEI +G++ +K + R PG +AK+AV S D IDPVGACVG Sbjct: 200 KIYVSRTLPLFLERLLEREVPEIQDGLITIKKIVRLPGEKAKIAVESYDDRIDPVGACVG 259 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 +RG+R+Q ++ EL E ID++ ++ + + ++ AL PA VT +V+D + R V + E Sbjct: 260 IRGNRIQPIIRELNKESIDVINYTSNPSLYIARALAPAKVTSIVIDNENKRANVYINPED 319 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +S AIG+ G N++LA QLTG+ I+II + + ++ +DE + +L Sbjct: 320 ISSAIGKNGANIKLAIQLTGYHIEIIRGDVEIDEEDIFLDDFAD------EIDEWVIDIL 373 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 G +++ + E+ +EET + + E Sbjct: 374 KNIGCDTAKQVLRLTREELIERTDLEEETVDYVIKVLKTEFEKD 417 >gi|326382939|ref|ZP_08204629.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] gi|326198529|gb|EGD55713.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] Length = 347 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 31/354 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +K + + VLS + ++ A R G + R++I+ ++G + + Sbjct: 5 ISALRLIEADKGVPAETVLSAIETALLTAYRHTDGFAPNARIDIDRKSGQVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D ++ V P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------AQELDEDRNV--VHEWDDTPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y E GE++ G V+ N VIV +G+ ++GVI E + E+ + GDR Sbjct: 103 NYGELVAHEGEVVGGIVQADAKANARGMVIVQIGSDSNATEGVIPPAEQVPGESYKHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 IKCYVVGVARGSRGPQITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 + + ++ GAC+G G RV+ V++EL EKIDI+ ++ D A FV +AL PA V V Sbjct: 223 HTGVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYATDPAEFVGHALSPAKVVSVTV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +D++ VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ D R + Sbjct: 283 IDQETKAARVIVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDAGDGGPRDTE 336 >gi|262037365|ref|ZP_06010830.1| transcription termination factor NusA [Leptotrichia goodfellowii F0264] gi|261748622|gb|EEY35996.1| transcription termination factor NusA [Leptotrichia goodfellowii F0264] Length = 365 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 125/346 (36%), Positives = 199/346 (57%), Gaps = 3/346 (0%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ++ L+ D + EK I ++ +L + ++ A + YG + + IN ETG++ Sbjct: 1 MKSKDQRVFLEALDELEKEKGIIKEELLEAVETALLAAYKKNYGDKDNAEISINRETGEV 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F +V+ VE +ISL+ A +GG + + +F R A+Q+AKQ+I+Q Sbjct: 61 KVFSRKTIVQTVEKPEEEISLEDAIALKKKSKLGGTIDFEINAENFKRNAIQNAKQIIVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ + FK I+S V++ E GN+ +D+ + ++ E + G Sbjct: 121 KVRECEKKNIFNRFKQIEKSIVSAVVRKTDEKGNLYIDINGLEAIVPEKELSEADKFIQG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+K Y+ V + + LSR + M L ++E+PEI +G +Q+K ++R+ GSR K+ Sbjct: 181 DRLKVYVGAVEESTKYTKCFLSRKVEELMRGLLNLEIPEIEDGTIQIKQIAREAGSRTKI 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S D ++D GAC+G G R+Q+++ EL+ EK+D+V+W D FV NAL PA V V Sbjct: 241 AVYSDDPNLDVKGACIGKSGMRIQSIIDELKGEKVDVVLWDEDIRYFVKNALNPAEVISV 300 Query: 300 VLDED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + E+ V V +EQLSLAIG++GQN RLA++L G IDI T Sbjct: 301 EIIEEDGEQIARVEVDEEQLSLAIGKKGQNSRLAARLCGIKIDIHT 346 >gi|198277417|ref|ZP_03209948.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135] gi|198269915|gb|EDY94185.1| hypothetical protein BACPLE_03631 [Bacteroides plebeius DSM 17135] Length = 419 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 139/422 (32%), Positives = 235/422 (55%), Gaps = 10/422 (2%) Query: 4 ANRLELLQIADAVA--YE-KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 A + E + + D + E K+IDR ++SV+ +S + ++GT + V +NP+ GD Sbjct: 2 AKKEETVSLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDF 61 Query: 61 SLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 ++R EVV EE+ N QI+L AR D S ++G V+D + FGR A+ + +Q + Sbjct: 62 EIWRNREVVADEELTNPNLQIALSEARKIDASYEVGEEVTDEVIFEKFGRRAILNLRQTL 121 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLR 177 K+ E E+D Y ++ DKVG +IS V ++ +++ D ++ ++ + E I + R Sbjct: 122 ASKILELEKDSLYNKYIDKVGTVISAEVYQIWKKEILLLDDEGNELLLPKTEQIPSDFYR 181 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 G+ ++ + V + P+++LSRT P F+ +LF EVPEI +G++ +K ++R PG RA Sbjct: 182 KGETARAVVARVDNKNNNPKIILSRTSPVFLQRLFEQEVPEINDGLITIKKIARIPGERA 241 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV S D IDPVGACVG++GSR+ +V ELR+E ID++ ++ + F+ AL PA V+ Sbjct: 242 KIAVESYDERIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNIQLFIQRALSPAKVS 301 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++ ED R EV + E++SLAIG+ G N++LAS LT +TID+ E + +D Sbjct: 302 SIIMHEDEKRAEVYLKPEEVSLAIGKGGLNIKLASMLTEYTIDVYRELGEDAVADEDIY- 360 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 +DE + + + A G + + + +E T ++ + Sbjct: 361 ---LDEFKDEIDEWVINAIKAIGIDTAKGVLNAPREMLIEKADLEENTVDDVLRILKAEF 417 Query: 418 EG 419 E Sbjct: 418 EE 419 >gi|227875842|ref|ZP_03993968.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC 35243] gi|269977478|ref|ZP_06184450.1| transcription termination factor NusA [Mobiluncus mulieris 28-1] gi|306819123|ref|ZP_07452837.1| transcription termination factor NusA [Mobiluncus mulieris ATCC 35239] gi|307700036|ref|ZP_07637085.1| transcription termination factor NusA [Mobiluncus mulieris FB024-16] gi|227843590|gb|EEJ53773.1| transcription elongation factor NusA [Mobiluncus mulieris ATCC 35243] gi|269934394|gb|EEZ90956.1| transcription termination factor NusA [Mobiluncus mulieris 28-1] gi|304648099|gb|EFM45410.1| transcription termination factor NusA [Mobiluncus mulieris ATCC 35239] gi|307614797|gb|EFN94017.1| transcription termination factor NusA [Mobiluncus mulieris FB024-16] Length = 327 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 130/337 (38%), Positives = 199/337 (59%), Gaps = 24/337 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 V EK +D + +++ + +++ KA R+ G + RVE++ +TG++ ++ V E Sbjct: 7 ALRLVEAEKGMDFESLVATVEEALLKAYRNQSGVKAPARVEVDRKTGEVKVW-----VTE 61 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 ++ +G V + P DFGR A + K VIIQ+ +E E + Sbjct: 62 LDEEGN--------------ALGDV---EVTPEDFGRTAAATVKSVIIQRFQEEEDKQVL 104 Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 +FK+++G+++SG V + + VDLG+ +GVI E E+ R G+R++ Y+ Sbjct: 105 GDFKERIGQVVSGVVVAARDPKFIAVDLGDIEGVIPPAEQAPGEHFRDGERIRVYVLSAA 164 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +GP + LSRTHP + LF+ EVPEI G+V +++V+R+PG R K+AV + + ++P Sbjct: 165 RGMKGPHIELSRTHPGLVQGLFNREVPEIEKGLVVIESVAREPGHRTKIAVRALEKGMNP 224 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309 GAC+G GSRV+AV+ EL EKIDI+ WS + F+ NAL PA V V + DED Sbjct: 225 KGACIGPNGSRVRAVMNELNGEKIDIIDWSDNPVEFIANALSPAKVVSVRVLDEDRRLAR 284 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E Sbjct: 285 VVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDSE 321 >gi|296129355|ref|YP_003636605.1| transcription termination factor NusA [Cellulomonas flavigena DSM 20109] gi|296021170|gb|ADG74406.1| transcription termination factor NusA [Cellulomonas flavigena DSM 20109] Length = 364 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 126/341 (36%), Positives = 197/341 (57%), Gaps = 7/341 (2%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 +Q + E+ I DV++ + ++ A G S RVE++ TG ++++ Sbjct: 5 MQALRLIEREREISLDVLVEAIEQALLSAYHRTPGARSRARVELDRRTGHVTVWARDPAP 64 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E + VA P + P FGR+A +A+QVI+Q++R+AE D+ Sbjct: 65 EAPAPEVAEDGTVVAVAPAPEMP-----EYDDTPEGFGRIATATARQVIVQRLRDAEDDQ 119 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 F+ K GE++ G +++ + V+VD+G + V+ E + E G+R+++++ + Sbjct: 120 VLGTFRSKAGEVLGGVIQQGRDPRTVLVDVGGVEAVLPAHEQVPGERYVHGERLRAFVLE 179 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + + Sbjct: 180 VARGQRGPQITLSRTHPNLVRKLFALEVPEIADGTVEITAMAREAGHRTKMAVRANVAGV 239 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKVVLDEDVGR 307 + GAC+G G RV+AV+ EL EKIDIV S D A + +AL PA V V+D Sbjct: 240 NAKGACIGPMGGRVRAVMAELHGEKIDIVDHSDDPAEMIAHALSPARVLDVRVVDAAARA 299 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E + Sbjct: 300 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAEPA 340 >gi|319790652|ref|YP_004152285.1| NusA antitermination factor [Thermovibrio ammonificans HB-1] gi|317115154|gb|ADU97644.1| NusA antitermination factor [Thermovibrio ammonificans HB-1] Length = 380 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 139/361 (38%), Positives = 215/361 (59%), Gaps = 20/361 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 + + EK I ++ V+ + I AA+ G D+ V+I+ + D +++ +VVEEV Sbjct: 8 IELLCKEKGISKEDVIEAVKVGIINAAKKA-GYRGDLVVKIDEDGKDFGIYQRKKVVEEV 66 Query: 73 ENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 + +ISL+ AR+ + +G V + + GR+A ++A QVI K+ EAER + Sbjct: 67 TDPDHEISLEEARELFGDQVKLGDEVLIEIKTEELGRIAAKAAAQVIHDKITEAERRALF 126 Query: 132 LEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 F+ K+G++ISGTVK ++ +++VDLG GV+ ++E I +E R GDRV++YIYDV Sbjct: 127 DYFRQKIGDVISGTVKEIKRNGDIVVDLGRVIGVLPKEEQIPKERYRIGDRVRAYIYDVV 186 Query: 191 REQRGP--------------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + + V+LSRTHP+ + +L +E+PE+ G+V+VKAV+R+PG R Sbjct: 187 FDYKRYNRKKPSRIDDYPPPYVILSRTHPKLLKRLMEIEIPEVAEGLVEVKAVAREPGVR 246 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S + IDPVGAC+G++GSR+ + EL EKI+I+ WS D A V AL PA V Sbjct: 247 AKVAVDSKEDYIDPVGACIGVKGSRILPISRELSGEKIEIIRWSDDVAELVARALSPAKV 306 Query: 297 TKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + ED R+EV+VP +QLSLAIG+ G N RLAS+L G ++ + + + Sbjct: 307 IQAESYEDENGEFRVEVVVPDDQLSLAIGKHGVNARLASKLAGQAGHVVGIDIIKESDYR 366 Query: 354 D 354 Sbjct: 367 K 367 >gi|238916823|ref|YP_002930340.1| N utilization substance protein A [Eubacterium eligens ATCC 27750] gi|238872183|gb|ACR71893.1| N utilization substance protein A [Eubacterium eligens ATCC 27750] Length = 381 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 135/380 (35%), Positives = 228/380 (60%), Gaps = 14/380 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ DA+ E ID++++ + + S+ ++ + + RVE++ TGD ++ Sbjct: 2 NKELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYSD 61 Query: 66 LEVVEEVENYT------------CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 VVEEV I+L+ AR P +G V++ + +F R A ++ Sbjct: 62 RTVVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAKN 121 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETIS 172 AK I+Q +RE E++ Y E+ K E+I+G V+RV + G++ +DLG V++ D+ Sbjct: 122 AKNTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGRLQTVLKADDKFK 181 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQV-LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 + PGDR+K Y+ DV ++G V +SR + + KLF EV EI +G+V++ ++R Sbjct: 182 DKKFVPGDRIKLYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIMGIAR 241 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + GSR K+AV ++ +++DPVGACVG+ G+RV+A+V EL +E+IDI+ W +SA ++NAL Sbjct: 242 EAGSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLIVNAL 301 Query: 292 RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 PA V V D++ + +++V ++QLSLAIG++GQNVRLA++LTG+ IDI +E E + Sbjct: 302 SPAKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDIKSEAEPEEHT 361 Query: 352 QKDFNERTQFFMQAINVDEI 371 +++ E +++DE Sbjct: 362 EEENLEEEYVEPSELSLDEE 381 >gi|297156812|gb|ADI06524.1| transcription elongation factor NusA [Streptomyces bingchenggensis BCW-1] Length = 330 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 194/341 (56%), Gaps = 23/341 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + EK I D+++ + ++ A G+ RVE++ TG ++++ Sbjct: 5 MSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRRARVELDRATGHVTVW------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGV-VSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 AR+ + G P FGR+A +AKQVI+Q++R+AE + Sbjct: 59 --------------AREDAEDLAEGEEPREFDDTPSGFGRIAAMTAKQVILQRLRDAEEE 104 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + E+ + G++++G V++ + NV+VD+G + ++ E + E+ G R++SY+ Sbjct: 105 ITFGEYAGREGDVVTGVVQQGKDPKNVLVDIGRLEAILPVQEQVPGEDYAHGTRLRSYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S Sbjct: 165 RVVKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSG 224 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 ++ GAC+G G RV++V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 225 LNAKGACIGPMGGRVRSVMAELHGEKIDIVDWSDDPAELVANALSPARVSKVEVVDMGAR 284 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V VP QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 285 SARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQ 325 >gi|260905192|ref|ZP_05913514.1| transcription elongation protein NusA [Brevibacterium linens BL2] Length = 320 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 124/336 (36%), Positives = 193/336 (57%), Gaps = 24/336 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + + E+ I D ++ ++ ++ A + G D R E++ TG++ + + Sbjct: 5 LSVLRIIEREREIPLDTLIELIEQALFLAYQKTEGAWPDSRAELDKSTGEVRILAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E +N I P FGR+A Q+A+QVI Q++R+ E + Sbjct: 61 -EFDNDDNPIG-----------------EFDDTPTGFGRIAAQTARQVIHQRLRDVEDES 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 FK + GEI+SGT+++ + V VDLG+ + V+ E + E+ R G R++ YI D Sbjct: 103 VLGNFKGREGEIVSGTIQQGRDPQMVQVDLGDVEAVLPPHEQVPGESYRHGTRLRVYIAD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + +G V +SRTHP + +LF E PEI +G V++ +++R+ G R KLAV ++ + Sbjct: 163 VHKGPKGTSVTVSRTHPNLVRRLFAHEAPEIADGTVEIVSLAREAGHRTKLAVRATKPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + G+C+G GSRV+AV+ EL EKIDIV +S D A F+ +AL PA +KV + D D+ Sbjct: 223 NAKGSCIGELGSRVRAVMNELGQEKIDIVDYSDDPAKFIGHALSPAKASKVDILDPDLQE 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 IVP++QLSLAIG+ GQN RLA++LTGW IDI+ Sbjct: 283 SRAIVPRDQLSLAIGKEGQNARLAAKLTGWKIDIVP 318 >gi|220912195|ref|YP_002487504.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6] gi|219859073|gb|ACL39415.1| NusA antitermination factor [Arthrobacter chlorophenolicus A6] Length = 326 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 121/337 (35%), Positives = 199/337 (59%), Gaps = 24/337 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D+++ + ++ A G R E++ ++G ++++ + Sbjct: 5 MSALRLLEREREIPLDLLIPTIEQALLVAYHKSPGAFEKARAELDRKSGHVTIWAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+++ I P FGR+A +A+Q+I+Q++R+ E D Sbjct: 61 -EIDDDGAPIG-----------------EFEDTPAGFGRIAASTARQIILQRLRDVEDDN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFK + GE++SGT+++ ++I V+LG+ + ++ E + E G+R+++ + D Sbjct: 103 VLGEFKGREGELVSGTIQQGNNPHMIQVNLGSLEALLPPPEQVPGEKYIHGNRLRALVID 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +GP V LSR+HP + KLF +EVPEI + V++ A++R+ G R K+AV ++ S I Sbjct: 163 VHRGTKGPSVTLSRSHPGLVRKLFELEVPEIADHSVEIVALAREAGHRTKIAVKANASGI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G GSRV+AV+TEL DEKIDIV +S + ATF+ +AL P+ V V + DE Sbjct: 223 NAKGACIGEMGSRVRAVMTELNDEKIDIVDFSENPATFIASALSPSRVNSVTITDEATRS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V+VP QLSLAIG+ GQN RLA++LTGW IDI+++ Sbjct: 283 ARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIVSD 319 >gi|282861439|ref|ZP_06270504.1| NusA antitermination factor [Streptomyces sp. ACTE] gi|282564097|gb|EFB69634.1| NusA antitermination factor [Streptomyces sp. ACTE] Length = 343 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 22/344 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A +K I DV++ + ++ A G+ RVE++ G ++++ Sbjct: 6 KLLKGLAQDKEIPFDVLVGAIESALLIAYHRTEGSHRRARVELD-AAGHVTVWAK----- 59 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ + A++ D P FGR+A +AKQVI+Q++R+AE DR Sbjct: 60 --EDPADLEEGQEAKEFDD------------TPSGFGRIAASTAKQVILQRLRDAEDDRT 105 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 + E+ G++++G V++ + NV+VD+G + ++ E + E G R+++Y+ V Sbjct: 106 FGEYAGHEGDVVTGLVQQGKDPKNVLVDIGKLEAILPVQEQVPGEEYTHGLRLRTYVVRV 165 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 + RGP V LSRTHP + KLF +EVPEI +G V ++A++R+ G R K+AV S+ + ++ Sbjct: 166 AKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVVIEAIAREAGHRTKIAVRSTRAGLN 225 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRI 308 P GAC+G GSRV+ V+ EL EKIDIV WS D A V NAL PA V++V +D Sbjct: 226 PKGACIGPMGSRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSEVEVVDLGARSA 285 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 V VP QLSLAIG+ GQN RLA++LTGW IDI + E R+ Sbjct: 286 RVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTETDEERE 329 >gi|160943264|ref|ZP_02090500.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii M21/2] gi|158445503|gb|EDP22506.1| hypothetical protein FAEPRAM212_00750 [Faecalibacterium prausnitzii M21/2] gi|295105168|emb|CBL02712.1| transcription termination factor NusA [Faecalibacterium prausnitzii SL3/3] Length = 368 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 221/367 (60%), Gaps = 8/367 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59 M +AN+ + + + +E+ I + ++ + +I A + Y D IRV+I+P+TG Sbjct: 1 MTAANK-DFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHIRVDIDPDTGR 59 Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + ++V E+ + +I + AR S ++G + PL DFGR+A Q+AK V Sbjct: 60 FDVALIQDIVADEDWYDEHAEIGVTEARKIRSSYEVGDRIITPLKTRDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRE 174 I Q +REAER++Q E + + +I+ TV RV+ IV DLG + V+ R+E + E Sbjct: 120 IRQGIREAERNQQLSEIQSRAHDIVQATVTRVDTEKGIVALDLGKGGEAVLPRNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G+ ++ YI DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G Sbjct: 180 VYTEGETLQVYIVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V KV L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E ++ Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEDEE 359 Query: 354 DFNERTQ 360 + T Sbjct: 360 PKKDATD 366 >gi|145224621|ref|YP_001135299.1| transcription elongation factor NusA [Mycobacterium gilvum PYR-GCK] gi|315444953|ref|YP_004077832.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] gi|145217107|gb|ABP46511.1| NusA antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315263256|gb|ADT99997.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] Length = 353 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 31/367 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G +D ++I+ +TG + + Sbjct: 5 MAALHAIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR D ++ + P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 59 --------------ARQTDEDGNV--LHEWDDTPEGFGRIAATTARQVILQRLRDAENEK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF + G+I++G ++R N V+V +G S+GVI E + E GDR Sbjct: 103 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVARGAREPVITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 TSRAPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ D Sbjct: 283 IDEAARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDADKNGGDGPGGHDRS 342 Query: 361 FFMQAIN 367 Sbjct: 343 ASRPDAG 349 >gi|91200793|emb|CAJ73846.1| strongly similar to transcription elongation protein NusA [Candidatus Kuenenia stuttgartiensis] Length = 357 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 142/383 (37%), Positives = 229/383 (59%), Gaps = 32/383 (8%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 ++ LL++ D++ +K I ++VV + ++ AA+ + + + ++I+ +TG+I Sbjct: 1 MDKENLLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEI--- 57 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 ++++ R DPS + GR+ Q+AKQVIIQK+R Sbjct: 58 ---------------VAMEGDRKIDPS--------------ELGRITAQTAKQVIIQKIR 88 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAERD + +F + G I+SG V+R E +IV+LG ++GV+++ E + E+ G+RV+ Sbjct: 89 EAERDVIFEDFCKRKGVIVSGKVQRFEGATMIVNLGKTEGVLQKSEQTANEHYTIGERVR 148 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + I DV++ ++ LSRTHP F+ KLF +EVPEI +++KA++R+ G R+K+AV S Sbjct: 149 AVILDVKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVAS 208 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 SD ++D VGACVGMRGSR++ +V EL EKIDI+ WS + + NAL+PA V+ ++L Sbjct: 209 SDENVDCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILSP 268 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + ++VP +QLSLAIG+RGQNVRLAS+LT W IDIIT+ E ++ D E + Sbjct: 269 ENRTATIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAEFEKRQKADDLELAEVAD 328 Query: 364 QAINVDEIIAHLLVAEGFADVEE 386 ++ VA ++ + Sbjct: 329 ANNVSTNDLSGKNVAATNSEYND 351 >gi|226366090|ref|YP_002783873.1| transcription elongation factor NusA [Rhodococcus opacus B4] gi|226244580|dbj|BAH54928.1| transcription elongation protein NusA [Rhodococcus opacus B4] Length = 343 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 129/349 (36%), Positives = 197/349 (56%), Gaps = 32/349 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + V+S + ++ A R G R++++ ++G + + Sbjct: 5 IAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A D D + +G D P FGR+A +A+QVI+Q++R+AE + Sbjct: 59 --------------AHDVDSDGNMVGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHE 102 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGD 180 R + E+ GEI+ G ++R N V+V +G ++G+I E + EN G+ Sbjct: 103 RSFGEYSTHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGE 162 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+A Sbjct: 163 RLKCYVVGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V Sbjct: 223 VQSRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVT 282 Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 VVDPEARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPA 331 >gi|111023601|ref|YP_706573.1| transcription elongation factor NusA [Rhodococcus jostii RHA1] gi|110823131|gb|ABG98415.1| transcription elongation protein NusA [Rhodococcus jostii RHA1] Length = 343 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 130/349 (37%), Positives = 197/349 (56%), Gaps = 32/349 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I + V+S + ++ A R G R++++ ++G + + Sbjct: 5 IAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A D D + +G D P FGR+A +A+QVI+Q++R+AE + Sbjct: 59 --------------AHDVDADGNMVGEEWDD--TPEGFGRIAATTARQVILQRLRDAEHE 102 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGD 180 R + E+ GEI+ G ++R N V+V +G ++G+I E + EN G+ Sbjct: 103 RSFGEYSTHEGEIVGGVIQRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGE 162 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ V R QRGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+A Sbjct: 163 RLKCYVVGVARGQRGPQITLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL P+ V V Sbjct: 223 VQSRVQGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVT 282 Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +D D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 VVDPDARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAAPA 331 >gi|86131975|ref|ZP_01050571.1| transcription elongation protein NusA [Dokdonia donghaensis MED134] gi|85817309|gb|EAQ38489.1| transcription elongation protein NusA [Dokdonia donghaensis MED134] Length = 410 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 124/419 (29%), Positives = 231/419 (55%), Gaps = 15/419 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E L + D+ + +K IDR +++++ + + + +G+ + + INP+ GD+ ++ Sbjct: 1 MENLALIDSFSEFKDDKLIDRVTLMAILEEVFRSTLKRRFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +ISL AR + ++G VS+ + +D GR ++ + +Q +I K Sbjct: 61 RNRVVVADGEVEDDNEEISLTDARKIEEDFEVGEDVSEEVKLIDLGRRSILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FK+ G++ + V + + +I +D ++ ++ +D I + R G+ Sbjct: 121 IHEHDNTNIYKQFKELEGDLYTAEVHHIRHRAIILLDDDGNEIILPKDRQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGVIESVELKGNKPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKNVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTTNLNLYITRALSPARITSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ + ++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ + Sbjct: 301 IDEENKTAQAVLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSDEIE 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + ++S++ +EET +++ +E E Sbjct: 361 AWV---------IEAFGKIGLDTARSVLEQEVSDLVRRTDLEEETVLDVMRILKEEFEE 410 >gi|330836562|ref|YP_004411203.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374] gi|329748465|gb|AEC01821.1| NusA antitermination factor [Spirochaeta coccoides DSM 17374] Length = 477 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 145/490 (29%), Positives = 256/490 (52%), Gaps = 30/490 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + ++ EK I +D+V+S + D ++ A + +GT ++ V+ + + +++L +VE Sbjct: 7 EAIKSMVEEKGISQDLVISTIEDFLRAAYKRKFGTDANAVVQFSDDLSNVTLNARRIIVE 66 Query: 71 EVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 + + T +ISL+ A + +IG + P+ +F R+++QSAKQ Q +R+ ++D Sbjct: 67 DENYYDMTTEISLEEAEELVGKCEIGDELLVPIDLKEFDRISIQSAKQRSRQSLRDIQKD 126 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+++K G++I G V+R + VD+G+++G++ R SRE R GD+VK Y+ Sbjct: 127 TTFKEYENKTGQLIIGYVQRQIGDDFYVDIGSTEGILPRRNQSSREVYRQGDKVKFYVEK 186 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + G +V+LSRT + + LF +EVPEIY+ +++ + R+ G R K+AV+S I Sbjct: 187 VEKTDHGVRVVLSRTSAELVKLLFELEVPEIYDHSIEIHDIVREAGYRTKVAVYSHRDDI 246 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 DPVGACVG++G R+Q ++ E+ EKIDI+ + P+ F+ NAL PA V V+ L ++ R Sbjct: 247 DPVGACVGLKGMRIQTIMKEIEGEKIDILKYDPNPEVFIRNALAPAEVKDVILLKQNERR 306 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IV QLSLAIG++G NVRLA+QL+ W I++ TE + + Sbjct: 307 ALAIVDDTQLSLAIGKQGLNVRLANQLSDWIIEVKTEAQFAELDIASTARSR-------- 358 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 F D +E+ V E+ E ++ E + +T ++ Sbjct: 359 ---------AEALFTDADEVEDVSDYEMT-------EDVPALRFDEGEVADEDYVTEEED 402 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 E + L +P ID+++ L +GI T+ +L + +K D Sbjct: 403 GDEGDL--NLSELP-IDAELIAKLNSHGIYTVGQYINLDDAELTSLDDVTVEEKQKLDEI 459 Query: 488 LSSLGTPKDQ 497 + + +++ Sbjct: 460 FNEFVSIEEE 469 >gi|312194982|ref|YP_004015043.1| transcription termination factor NusA [Frankia sp. EuI1c] gi|311226318|gb|ADP79173.1| transcription termination factor NusA [Frankia sp. EuI1c] Length = 391 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 133/351 (37%), Positives = 196/351 (55%), Gaps = 38/351 (10%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSL-----YGTMS-----DIRVEINPETGDISL 62 + E + + ++ + ++ KA + G D RV ++ ++G++++ Sbjct: 8 LRGIEREYDLSFETLVEAIETALLKAYQHTRVQQDAGDEEEPRVADARVVVDRKSGEVTV 67 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 A++ P G P DFGR+A +AKQVI+Q++ Sbjct: 68 L--------------------AQEIQPD---GSAREWDDTPADFGRIAQATAKQVIMQRL 104 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRP 178 REA+++ Y ++ D+ EI+SG V+ E V+VDLG +GV+ E + E L Sbjct: 105 REAKQEVTYGQYADREHEIVSGVVQHHEQRAGSRVVLVDLGTIEGVLPPAEQVPGETLEH 164 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDR+K Y+ V R G V LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+K Sbjct: 165 GDRIKCYVVHVARGPHGAAVTLSRTHPELVKGLFRLEVPEVADGTVEIAAIAREAGHRSK 224 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S + ++P GAC+G GSRV+AV+ EL EKIDIV WS D ATFV NAL PA V++ Sbjct: 225 IAVRSKVAGVNPKGACIGPMGSRVRAVMAELHGEKIDIVDWSADPATFVGNALSPARVSR 284 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V + D V VP QLSLAIGR GQN RLA++LT W IDI ++ E Sbjct: 285 VEVTDLAGRAARVTVPDYQLSLAIGREGQNARLAARLTSWRIDIHSDTEGD 335 >gi|116490510|ref|YP_810054.1| transcription elongation factor [Oenococcus oeni PSU-1] gi|290889910|ref|ZP_06552997.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429] gi|116091235|gb|ABJ56389.1| Transcription elongation factor [Oenococcus oeni PSU-1] gi|290480520|gb|EFD89157.1| hypothetical protein AWRIB429_0387 [Oenococcus oeni AWRIB429] Length = 473 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 138/439 (31%), Positives = 223/439 (50%), Gaps = 6/439 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S R EL A+ EK I ++ ++ + D++ A + + +++ V+++PE + Sbjct: 1 MASDYRRELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEF 60 Query: 61 SLFRLLEVVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 +L ++ EV+ + + + +I LK AR+ + + + G + + P DFGR+A QS K Sbjct: 61 NLLQIKEVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKS 120 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETISRENLR 177 Q +RE E++ + ++ EI+S V R + + V + + + + I E + Sbjct: 121 TQTIREKEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYK 180 Query: 178 PGDRVKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 GD +K I V RGPQ+ +SRT P+ + +LF EVPE+Y+G V +++++R+ G R Sbjct: 181 TGDPIKVLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDR 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 +K+AV ++DS++DP+G VG RGSRVQAVV EL E +DIV W D A ++ NAL PA V Sbjct: 241 SKVAVRTTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEV 300 Query: 297 TKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V+ D + VIVP QLSLAIG+RGQN RLA++LT + IDI +E + + Q Sbjct: 301 VDVIFSPDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAENDPQLQA 360 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 E D E A + D + A E Sbjct: 361 ILEESAKYAEEEDQSDETDE-TDEALEDETEYADANEYFSEGADQSDASEEEKTSESAEE 419 Query: 416 YLEGIDITLQKKIRELGVS 434 + + + K + Sbjct: 420 SSSAEEDSSKAKAKMTEAE 438 >gi|42526617|ref|NP_971715.1| transcription elongation factor NusA [Treponema denticola ATCC 35405] gi|41816810|gb|AAS11596.1| N utilization substance protein A, putative [Treponema denticola ATCC 35405] Length = 495 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 136/452 (30%), Positives = 233/452 (51%), Gaps = 36/452 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ A EK ID D VL ++ +++ + + +GT ++ N ETG ++ + Sbjct: 5 IIEAIREFAQEKGIDDDFVLHIVEQALKASYKKQFGTDAN--AVFNEETG--KIYSKKII 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E+ +N ISL+ A+ PS + G + + P G +V+ Q IQ +RE ++D Sbjct: 61 TEDAKNPVFDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIREMQKD 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG------DRV 182 Y E+ KVGEII G R GN+ VDLG +G++ + ++ R+ Sbjct: 121 TLYAEYSTKVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQCPGDHFGRNAAAGEESRI 180 Query: 183 KSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 K+ + +V++ ++ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+A Sbjct: 181 KALVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V+ Sbjct: 241 VSTDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVM 300 Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + D + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ + Sbjct: 301 ILDAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQFKQMDIYTDARKA 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + + + +IS +A + G E+ ++ E + Sbjct: 361 VENLFTDETSDE--------------DEEYEEISNVAELPGITEDILTVLRN--NEIEDI 404 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451 D+ + +E+ ++ G+ +++ L Sbjct: 405 QDLINME-------DDEIRALEGLTTEMADTL 429 >gi|89889478|ref|ZP_01200989.1| transcription termination factor NusA [Flavobacteria bacterium BBFL7] gi|89517751|gb|EAS20407.1| transcription termination factor NusA [Flavobacteria bacterium BBFL7] Length = 412 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 126/412 (30%), Positives = 231/412 (56%), Gaps = 15/412 (3%) Query: 6 RLELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 +E L + ++ + +K IDR +++++ D + A + YG + + INP+ GD+ + Sbjct: 2 NMENLALIESFSEFKDDKMIDRVTLMAILEDVFRSALKRKYGDDDNFDIIINPDKGDLEI 61 Query: 63 FRLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +R VV + VE+ +I L AR +P ++G V++ + + GR A+ + +Q +I Sbjct: 62 WRNRVVVADGEVEDDNSEIELTAARKIEPDYEVGEDVAEEVKLIQLGRRAILALRQNLIA 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179 K+ E + Y +FK+ GE+ S V + + +I +D ++ ++ +D I + R G Sbjct: 122 KIHEHDNTNIYKQFKELEGELYSAEVHHIRHRAIILLDDEGNEIIMPKDRQIGSDFFRKG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + V+ I V P ++LSRT P+F+ KLF E+PE+++G++ VKAV R+PG +AK+ Sbjct: 182 ENVRGIIESVELRGNKPNIILSRTSPKFLEKLFEQEIPEVFDGLITVKAVVREPGEKAKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D IDPVGACVG++GSR+ +V EL +E ID++ ++ ++ ++ AL PA + + Sbjct: 242 AVDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTSNTQLYIARALSPAKIISM 301 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 ++E+ + EV + E++S AIGRRG N+RLA +LTG+ ID+I + + +F++ Sbjct: 302 EINEETKKAEVRLNPEEVSKAIGRRGHNIRLAGKLTGYDIDVIRDGAEEDVELTEFSDEI 361 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 + ++ G + + I+++ +EET + + Sbjct: 362 EPWI---------IEEFSKIGLDTAKSILEQDIADLVKRTDLEEETVIAVVT 404 >gi|153873979|ref|ZP_02002372.1| Transcription termination factor NusA [Beggiatoa sp. PS] gi|152069556|gb|EDN67627.1| Transcription termination factor NusA [Beggiatoa sp. PS] Length = 355 Score = 279 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 161/355 (45%), Positives = 239/355 (67%), Gaps = 6/355 (1%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLR 177 +QK+REAER + ++D+ GE+ISG VKRVE GNVI+DLG + + +I RDE I RE++R Sbjct: 1 MQKIREAERAQIIEAYQDRQGELISGVVKRVERGNVILDLGGNAEALITRDEMIPRESVR 60 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 PGDR++ Y+Y VR E RGPQ+ LSRT P+ ++KLF+MEVPEI +++ +RDPG RA Sbjct: 61 PGDRLRGYLYSVRPESRGPQIFLSRTAPELLIKLFNMEVPEIGEHFLEIVDAARDPGLRA 120 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV D IDPVGACVGMRGSRVQA+ EL E++DI+V+ + A FV+NA+ PA V Sbjct: 121 KIAVKPKDPRIDPVGACVGMRGSRVQAISNELAGERVDIIVFDENPAQFVMNAMAPADVV 180 Query: 298 KVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 +++DE+ ++V V +EQLS AIGR GQNVRLASQLT WT++++T+++ +++ Sbjct: 181 SIIVDEETHSMDVAVQEEQLSQAIGRNGQNVRLASQLTSWTLNVMTDKQAREKHEQEALV 240 Query: 358 RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYL 417 + FM + VDE IA++LV EGF+ +EE+A V ++E+ IE FDE E++ RA++ L Sbjct: 241 MLELFMDELEVDEEIANILVQEGFSSIEEVAYVPLTEMLQIEAFDENLVKELRSRAKDAL 300 Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE-----NGIKTMEDLAGCSV 467 I +++ + +SEE + ++ + + + T E+L S+ Sbjct: 301 LTRAIATEEQDESILLSEEKLPQNMVADEMNEQFMQPVATTHKVITQENLNEQSI 355 >gi|237736658|ref|ZP_04567139.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC 9817] gi|229420520|gb|EEO35567.1| transcription elongation factor NusA [Fusobacterium mortiferum ATCC 9817] Length = 354 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 131/334 (39%), Positives = 204/334 (61%), Gaps = 3/334 (0%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV--EEVENYTCQ 78 I ++ +LS + ++ A + YG D+ VEI+ ETGD+ ++ + VV E++ + + Sbjct: 21 GISKESLLSTVEQALLAAYKKNYGEEEDVEVEIDRETGDVKIYEVKTVVPTEDLYDAAIE 80 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 IS A + + IG V+ + +F R A+Q+ KQ++IQKVREAER+ Y FK K Sbjct: 81 ISYDDALEIKKRVKIGEVIRIEVNCEEFRRNAIQNGKQIVIQKVREAEREYIYDRFKVKE 140 Query: 139 GEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 +II+G ++R E NV ++ + ++ E + R G+R+K Y+ +V + + P+ Sbjct: 141 HDIINGIIRRIDERKNVFIEFDGIEAILPPVEQSPADTYRVGERIKVYLAEVEKTNKFPK 200 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 +++SR H + KLF +E+PEI +G++++KAV+R+ GSRAK+AV+S+D +ID VGAC+G Sbjct: 201 IVISRKHEGLLRKLFELEIPEITSGLIEIKAVAREAGSRAKVAVYSADPNIDTVGACIGQ 260 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +G R++ +V EL EKIDIVVW FV L PA V V + E+ VIV QL Sbjct: 261 KGLRIKNIVNELNGEKIDIVVWKESVEEFVSAVLSPAKVVSVEVVEEENTARVIVDNSQL 320 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 SLAIG+ GQN RLA++LTG +DI T + Sbjct: 321 SLAIGKNGQNARLAAKLTGMRVDIKTADRVEEGE 354 >gi|296171600|ref|ZP_06852840.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894055|gb|EFG73817.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 351 Score = 279 bits (713), Expect = 9e-73, Method: Composition-based stats. Identities = 131/359 (36%), Positives = 198/359 (55%), Gaps = 31/359 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + VV Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVK------VV 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D + FV NAL PA V V Sbjct: 223 KSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPSRFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + Sbjct: 283 IDPNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDTPGGSEGHSEGHPEH 341 >gi|296139427|ref|YP_003646670.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296027561|gb|ADG78331.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 333 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 126/351 (35%), Positives = 194/351 (55%), Gaps = 31/351 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ EK I + V+ + ++ A + G R+++N TG++ + Sbjct: 5 MATLRAIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++ D +I + P FGR+A SA+Q+I Q++R+AE DR Sbjct: 59 --------------AQELDADGNI--ITEWDDTPEGFGRIAADSARQLITQRLRDAENDR 102 Query: 130 QYLEFKDKVGEIISGTVKRVEY----GNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 + EF GE++SG V+ G V+V +G +G++ E + EN GDR Sbjct: 103 TFGEFAVYEGEVVSGVVQADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V R QRG Q+ LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV Sbjct: 163 MKFYVVGVSRGQRGTQITLSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 +S ++ GAC+G G RV+ V+++L EKIDI+ + D A FV NAL P+ V V + Sbjct: 223 RTSVPGLNAKGACIGPMGQRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTI 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 D V+VP +LSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 283 VDPKEKAARVVVPDFKLSLAIGKEGQNARLAARLTGWRIDIRSDADPAAAE 333 >gi|86140762|ref|ZP_01059321.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis MED217] gi|85832704|gb|EAQ51153.1| transcription elongation factor NusA [Leeuwenhoekiella blandensis MED217] Length = 409 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 127/418 (30%), Positives = 234/418 (55%), Gaps = 15/418 (3%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + ++ + +K IDR ++++++ + + + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIESFSEFKDDKLIDRVMLMAILEEVFRSTLKKRFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + VE+ +ISL AR +P ++G VS+ + +D GR ++ + +Q +I K Sbjct: 61 RNRVVVADGEVEDENSEISLTEARRIEPDFEVGEDVSEEVKLIDLGRRSILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FKD GE+ + V + + +I+ D ++ ++ +D+ I + R G+ Sbjct: 121 IHEHDNTNIYKQFKDLEGELYNAEVHHIRHRAIILLDDEGNEIIMPKDKQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V + P +++SRT P F+ KLF E+PE+++G++ VK V R PG +AK+A Sbjct: 181 NVRGIIESVELKGNKPAIIMSRTSPLFLEKLFESEIPEVFDGLITVKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ +V EL +E ID++ ++ + ++ AL PA +T + Sbjct: 241 VDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDVINFTNNLQLYITRALSPAKITSIK 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D++ EV++ E++S AIGR G N+RLA QLTG+ ID+ E + +F++ Sbjct: 301 IDDENKTAEVMLKPEEVSKAIGRGGHNIRLAGQLTGYEIDVYREGVEEDVELTEFSD--- 357 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 +++ I G + + + ++ +EET ++ RE E Sbjct: 358 ------EIEDWIIAEFSKIGLDTAKSILEQDVEDLVRRTDLEEETIADVMRILREEFE 409 >gi|257063653|ref|YP_003143325.1| transcription termination factor NusA [Slackia heliotrinireducens DSM 20476] gi|256791306|gb|ACV21976.1| transcription termination factor NusA [Slackia heliotrinireducens DSM 20476] Length = 401 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 139/359 (38%), Positives = 208/359 (57%), Gaps = 37/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL+ A+A+EK ID ++ + S+ K+ +S+ D RV I+ TG I ++ L+ Sbjct: 4 ELMDALQALAHEKKIDEIYLIERLEASLAKSYQSILNLEWDARVTIDRTTGQIYVYELV- 62 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 T ++ D + P + R+A Q+AK VI VREA R Sbjct: 63 -------PTGEM--------DEDGYWTEFEERDVTPSNVSRIAAQNAKSVIASIVREAGR 107 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 Y EF+D+VG+I++GTV + IV + + + R+E + E Sbjct: 108 QSIYDEFRDRVGDIVTGTVLQGTPDFTIVKIRDGVEAELPHYDEKRNPGERNEVPAGERY 167 Query: 177 RPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R R+K+ I DVR P +++SRTHP + +LF +EVPEIY+G+V++ Sbjct: 168 RHNQRIKTLIIDVRDPNSVENRGRGDQARPAIVVSRTHPDLIRRLFELEVPEIYDGMVEI 227 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG+R+K+AV S + ++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A + Sbjct: 228 KSIAREPGARSKVAVASREPNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSEDPAKY 287 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA VT+V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 288 VANALSPARVTRVSVDEENQYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSTS 346 >gi|257791560|ref|YP_003182166.1| NusA antitermination factor [Eggerthella lenta DSM 2243] gi|317490693|ref|ZP_07949159.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA] gi|325833259|ref|ZP_08165765.1| transcription termination factor NusA [Eggerthella sp. HGA1] gi|257475457|gb|ACV55777.1| NusA antitermination factor [Eggerthella lenta DSM 2243] gi|316910224|gb|EFV31867.1| transcription termination factor NusA [Eggerthella sp. 1_3_56FAA] gi|325485641|gb|EGC88109.1| transcription termination factor NusA [Eggerthella sp. HGA1] Length = 405 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 137/358 (38%), Positives = 209/358 (58%), Gaps = 42/358 (11%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+A+E+ ID ++ + S+ K+ + + D RV I+ +TG I ++ L+ Sbjct: 5 ELIEALQALAHERKIDEFYLIERLEASLAKSYQHILDLEWDARVTIDRQTGHIYVYELVP 64 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124 V E P + G + P D R+A Q+AK VI VRE Sbjct: 65 VGE------------------PDEETGEYSEFEERDVTPDDVSRIAAQNAKGVIASIVRE 106 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173 A R Y EF D+VG++++GTV + I+ + + + R+E S Sbjct: 107 AGRQSIYEEFSDRVGDLVTGTVLQGTPDFTIIKIRDGVEAELPHYDVKRNPNERNERPSN 166 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGI 223 E+ R R+K I +VR +++SRTHP + +LF +EVPEIY+G+ Sbjct: 167 EHYRHNQRLKVLIIEVRDPNSDAPKMRGEQARPAIVVSRTHPDLIRRLFEIEVPEIYDGM 226 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V++K+++R+PG+R+K+AV S ++++DPVGACVG +GSRV+ VV ELR+E++D++ W+ D Sbjct: 227 VEIKSIAREPGARSKIAVASREANLDPVGACVGPKGSRVRMVVEELRNERVDVIQWAEDP 286 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A +V NAL PA VT+VV+DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 AVYVANALSPAKVTRVVIDEDNHYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDI 344 >gi|288800576|ref|ZP_06406034.1| transcription termination factor NusA [Prevotella sp. oral taxon 299 str. F0039] gi|288332789|gb|EFC71269.1| transcription termination factor NusA [Prevotella sp. oral taxon 299 str. F0039] Length = 421 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 136/402 (33%), Positives = 225/402 (55%), Gaps = 8/402 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE--EVENYTC 77 K+IDR ++SV+ +S + L+G+ + V +NP+ GD ++R VV EV + Sbjct: 24 KNIDRATLVSVLEESFRNVLAKLFGSDENFDVIVNPDKGDFEIYRNRVVVANGEVSDENK 83 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I+L A +P ++G VS+ + FGR A+ + +Q + KV E E D Y ++KD+ Sbjct: 84 EIALNDAIKIEPDYEVGEEVSERVNFAGFGRRAILNLRQTLASKVLELEHDALYNKYKDR 143 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+IIS V + + ++VD N++ + + E I + R G+ V++ I V E P Sbjct: 144 VGQIISAEVYQVWKREVLLVDDENNELKLPKSEQIPSDVYRKGETVRAVIARVDNENNNP 203 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ LSRT P F+ +L EVPEI +G++ +K ++R PG RAK+AV S D IDPVGACVG Sbjct: 204 KIFLSRTSPMFLERLLEAEVPEINDGLISIKKIARMPGERAKIAVESYDERIDPVGACVG 263 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++G+R+ +V EL +E ID+V ++ ++ F+ AL PA++ + +DE+ + EV + EQ Sbjct: 264 VKGNRIHGIVRELCNENIDVVNYTSNTKLFIQRALSPAVINSINIDEEAHKAEVFLQPEQ 323 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ E ++ + + + +D+ I + Sbjct: 324 VSLAIGRSGLNIKLASMLTEYTIDVFREINENEADEDIYLDEFAD-----EIDQWIIDSI 378 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 A G + + + +EET + R E Sbjct: 379 KAIGLDTAKSVLSAPREMLIEKADLEEETVDHVLNVLRAEFE 420 >gi|313115476|ref|ZP_07800941.1| transcription termination factor NusA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622186|gb|EFQ05676.1| transcription termination factor NusA [Faecalibacterium cf. prausnitzii KLE1255] Length = 368 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 213/367 (58%), Gaps = 8/367 (2%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGD 59 M +AN E + + +E+ I + ++ + +I A + Y D ++V+I+P G Sbjct: 1 MAAANN-EFFEALSMLEHERGITAEYLIEKIKAAIIIAVKKNYEVEEDHVKVDIDPAAGR 59 Query: 60 ISLFRLLEVV--EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + +VV E+ + +I + A+ S ++G + PL DFGR+A Q+AK V Sbjct: 60 FDVALIQDVVADEDWYDEHSEIGITEAQKIRKSYEVGDRIVTPLKTKDFGRIAAQTAKHV 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV--DLGNS-DGVIRRDETISRE 174 I Q +REAER +Q E + + +I+ TV RV+ IV DLG + ++ +E + E Sbjct: 120 IRQGIREAERSQQLSEIQSRAHDIVQATVTRVDPEKGIVALDLGKGGEAILPHNEQVPGE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 G ++ Y+ DV +RGP+V++SRTHP + +LF +EVPEI++G V+VKA+SR+ G Sbjct: 180 VYTEGQTLQVYVVDVVSTERGPRVMISRTHPGLVKRLFELEVPEIFDGTVEVKAISREAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 +R K+AV+S D +++PV AC+G G+RV AVV +L EKIDIV WS D + F+ AL PA Sbjct: 240 ARTKMAVWSKDPNVNPVSACIGEHGARVAAVVEKLGGEKIDIVKWSEDISEFISAALSPA 299 Query: 295 IVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 V KV L + V VP +QLSLAIG +GQN RL ++LTG+ IDI E + Sbjct: 300 KVVKVELLPGETRSCRVTVPDQQLSLAIGNKGQNARLCARLTGYNIDIRPESGYYGEEEP 359 Query: 354 DFNERTQ 360 T Sbjct: 360 KKEAETD 366 >gi|294815429|ref|ZP_06774072.1| Transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] gi|326443782|ref|ZP_08218516.1| transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] gi|294328028|gb|EFG09671.1| Transcription elongation factor NusA [Streptomyces clavuligerus ATCC 27064] Length = 335 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 126/349 (36%), Positives = 196/349 (56%), Gaps = 22/349 (6%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 ++ +A EK I D+++ + ++ A G+ R E++ +TG ++++ Sbjct: 6 KLLKGLAQEKEIPFDLLVEAIESALLIAYHRTEGSRRHARAELSRQTGHVTVWAE----- 60 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ L+ ++ P DFGR+A +A+QVI Q++R+AE D Sbjct: 61 --EDPA---DLEEGQEPK---------EFDDTPSDFGRIAATTARQVIQQRLRDAENDVT 106 Query: 131 YLEFKDKVGEIISGTVKR-VEYGNVIVDLG-NSDGVIRRDETISRENLRPGDRVKSYIYD 188 + E+ + G+++SG V++ + NV+V L + ++ E + E G R+++Y+ Sbjct: 107 FGEYARREGDVVSGQVQQGKDPKNVLVKLDDKLEAILPVQEQVPGEEYPHGLRLRTYVVR 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + RGP V LSRTHP + KLF +EVPEI +G V++ A++R+ G R K+AV S+ S + Sbjct: 167 VAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEIAAIAREAGHRTKIAVRSTRSGL 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G RV+ V+ EL EKIDIV WS D A V NAL PA V+KV +D Sbjct: 227 NAKGACIGPMGGRVRNVMAELHGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLGARS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 V VP QLSLAIG+ GQN RLA++LTGW IDI + E + + + Sbjct: 287 ARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEPGTDTEPRQD 335 >gi|228470366|ref|ZP_04055269.1| transcription termination factor NusA [Porphyromonas uenonis 60-3] gi|228307948|gb|EEK16831.1| transcription termination factor NusA [Porphyromonas uenonis 60-3] Length = 459 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 135/457 (29%), Positives = 241/457 (52%), Gaps = 28/457 (6%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYSEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V + + ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGEMITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA V+ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTSNDSLFIQRALSPAKVSSIELYPETAKAEVYLQPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + LAIG+ N++LAS LTG+ I++ + D+ +E + +++ + +L Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLSEFSD------EIEDWVIKML 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + G + +E+ + ET + +R L + Sbjct: 375 LDIGLNTARAVLTTSRTELLQKTDLEIETIDHV------------------LRILSSEFD 416 Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDLLG 472 L + + + + L ++ + T ++A ++DL Sbjct: 417 LEELEEMGLPQENIDLIKSPVPTQSEIAEAIIEDLKE 453 >gi|183981905|ref|YP_001850196.1| N utilization substance protein a NusA [Mycobacterium marinum M] gi|183175231|gb|ACC40341.1| N utilization substance protein a NusA [Mycobacterium marinum M] Length = 347 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 31/365 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRG 342 Query: 361 FFMQA 365 Sbjct: 343 LAHDH 347 >gi|262202085|ref|YP_003273293.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] gi|262085432|gb|ACY21400.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] Length = 340 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 126/349 (36%), Positives = 197/349 (56%), Gaps = 33/349 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + +K I D V++ + ++ A R G R+++N +TG + + Sbjct: 5 INALRMIEADKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVV-SDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A++ D + G VV P FGR+A +A+QVI+Q++R+AE + Sbjct: 59 --------------AQELDDN---GDVVHEWDDTPEGFGRIAATTARQVILQRLRDAENE 101 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGD 180 + + + GEI+ G V++ N ++V +G+ ++G+I E + E+ GD Sbjct: 102 KNFGDLVTHEGEIVGGVVQQDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGD 161 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R+K Y+ V R RGPQ+ LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+A Sbjct: 162 RIKCYVVGVSRGARGPQITLSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIA 221 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 222 VHTGVAGLNAKGACIGPMGQRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVS 281 Query: 301 -LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +D V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 282 VVDPTAKAARVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIRSDADPA 330 >gi|325473159|gb|EGC76355.1| N utilization substance protein A [Treponema denticola F0402] Length = 495 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 134/452 (29%), Positives = 232/452 (51%), Gaps = 36/452 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ A EK ID D VL ++ +++ + + +GT ++ N ETG ++ + Sbjct: 5 IIEAIREFAQEKGIDDDFVLHIVEQALKASYKKQFGTDAN--AVFNEETG--KIYSKKII 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E+ +N ISL+ A+ PS + G + + P G +V+ Q IQ ++E ++D Sbjct: 61 TEDAKNPVFDISLEEAKKLAPSCEAGDELLVEVDPKSLGINSVKVGMQRAIQCIKEMQKD 120 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPG------DRV 182 Y E+ KVGEII G R GN+ VDLG +G++ + ++ R+ Sbjct: 121 TLYAEYSTKVGEIIIGYYHRERNGNIYVDLGKVEGLLPKKYQCPGDHFGRNAAAGEESRI 180 Query: 183 KSYIYDVRREQRGP--QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 K+ + +V++ ++ Q++LSRT +F+ ++ +EVPEI +GIV++ + R+PG R K+A Sbjct: 181 KALVREVKKHRQSNVVQLILSRTDAEFVRQILEVEVPEIESGIVKIHNIVREPGYRTKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + IDPVGACVG +G+R+QAV+ EL DEKIDI+ +S D ++ +AL PA V V+ Sbjct: 241 VSTDRDDIDPVGACVGAKGARIQAVIAELDDEKIDILPYSEDPKAYIKSALSPAEVMDVM 300 Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 + D + + IV QLSLAIG+ G NVRLA++L W ID+ TEE+ + Sbjct: 301 ILDAEKRKALAIVSDSQLSLAIGKHGLNVRLANRLVDWNIDVKTEEQFKQMDIYTDARKA 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 + + + +IS ++ + G E+ ++ E + Sbjct: 361 VENLFTDETSDE--------------DEEYEEISNVSELPGITEDILAVLRN--NEIEDI 404 Query: 420 IDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451 D+ + E+ ++ G+ +++ L Sbjct: 405 QDLINME-------DNEIRALEGLTTEMADTL 429 >gi|333029428|ref|ZP_08457489.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011] gi|332740025|gb|EGJ70507.1| NusA antitermination factor [Bacteroides coprosuis DSM 18011] Length = 420 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 131/420 (31%), Positives = 234/420 (55%), Gaps = 9/420 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + + L+ K ID+ ++SV+ +S + + GT + V +NP+ GD ++R Sbjct: 6 DNISLIDTFSDFKENKKIDKTTMISVLEESFRSVIAKIVGTDENYDVIVNPDQGDFEIWR 65 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 EVV + V + QISL AR D S +IG V+D + FGR A+ + +Q + K+ Sbjct: 66 NREVVADGDVTDENMQISLTEARKTDESYEIGEEVTDKVHFESFGRRAILNLRQTLASKI 125 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDR 181 E E+D Y ++ ++VG I+S V ++ ++ VD ++ ++ + E I R+ R G+ Sbjct: 126 LELEKDSLYNKYIERVGMIVSAEVYQIWKKEILLVDDEGNELILPKSEQIPRDFFRKGES 185 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V++ + V + P+++LSRT P F+ +LF +EVPEI +G++ +K V+R PG RAK+AV Sbjct: 186 VRAVVARVDNKNNNPKIILSRTSPLFLERLFELEVPEINDGLITIKKVARIPGERAKVAV 245 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ +L PA ++ + L Sbjct: 246 ESYDDRIDPVGACVGVKGSRIHGIVRELCNENIDVINYTSNIQLFIQRSLSPATISSIRL 305 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ + E+ + +++SLAIG+ G N++LAS LT +TID+ E +++ +E + Sbjct: 306 NEEEHKAEIFLQPDEVSLAIGKGGLNIKLASMLTEYTIDVFRELDETEGEDIYLDEFSD- 364 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGID 421 ++ + + G + + V + + +EET E+ + E + Sbjct: 365 -----EIEGWVIDAIKGLGLTTAKAVLEVPRNRLIEDADLEEETVDEVLSILKSEFEEDE 419 >gi|268608287|ref|ZP_06142014.1| NusA antitermination factor [Ruminococcus flavefaciens FD-1] Length = 416 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 133/361 (36%), Positives = 210/361 (58%), Gaps = 5/361 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY-GTMSDIRVEINPETGDI 60 +S N + +++ E S++ D+++ + ++ KAA+ Y + IRVEI+P+T Sbjct: 1 MSKNNA-FFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKF 59 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F + +++++ ++++ VAR DP+ +GG + + GR+A SAKQ I Sbjct: 60 EMFIVQDIIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKG 119 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVE--YGNVIVDLGNSDGVIRRDETISRENLRP 178 +RE R++ +F+ K E I+ V +VE G V V ++ + R+E I E L Sbjct: 120 DLREINREQMLGKFEQKEHECITAKVSQVEPGRGTVTVVYEGTELYLFRNEQIPGETLEE 179 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G VK YI + + + P V +SRTH + +LF +EVPEIY+G V+VK++SR+ GSR K Sbjct: 180 GQSVKVYITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTK 239 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV+S D ++D VGAC+G + SR+ A+V EL EKIDI+ WS + F+ AL PA V K Sbjct: 240 IAVWSKDPNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLK 299 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 ++ E+ VIVP QLSLAIG +GQN +LA++LTG+ IDI + N + Sbjct: 300 TIVTSEEENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDIKPRFDSVTNEEAPEMS 359 Query: 358 R 358 Sbjct: 360 P 360 >gi|296125433|ref|YP_003632685.1| NusA antitermination factor [Brachyspira murdochii DSM 12563] gi|296017249|gb|ADG70486.1| NusA antitermination factor [Brachyspira murdochii DSM 12563] Length = 498 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 129/450 (28%), Positives = 238/450 (52%), Gaps = 38/450 (8%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 ++ EK I +++ V+A +++ A + YG + + + + + ++++ VVEEV Sbjct: 9 LQQLSDEKDISVELLKEVIASTMELALKKKYGNDINFHIHFDNKN-NPTVYKGANVVEEV 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQY 131 + +ISL+ A+ D I++G V + ++ FGR+ AK QK+ + E++ Y Sbjct: 68 RDKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESMVAKTTFFQKISDLEKNIIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YIY V+ Sbjct: 128 NEFKRRENQLVNGYFQREHKGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYIYKVQG 187 Query: 192 EQRGP-------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++LL+RT F+ KLF +E+PEI +G +++K V R PG + K+AV S+ Sbjct: 188 GKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVAVVSN 247 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 +DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++++ D Sbjct: 248 KPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRIIITDP 307 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE + N + + + Sbjct: 308 EKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIVPLNQI 367 Query: 364 QAI----------------------------NVDEIIAHLLVAEGFADVEELACVKISEI 395 + +DE I L+ G +EEL + EI Sbjct: 368 FSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSIEELYNLSAEEI 427 Query: 396 ASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 D++T + ++ +E ++ + Sbjct: 428 MEKTNLDKDTVDNLMLVMKDVVEIVESEDE 457 >gi|169630217|ref|YP_001703866.1| transcription elongation factor NusA [Mycobacterium abscessus ATCC 19977] gi|169242184|emb|CAM63212.1| Transcription elongation protein NusA [Mycobacterium abscessus] Length = 331 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 132/348 (37%), Positives = 193/348 (55%), Gaps = 31/348 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 + +A +K I D + ++ ++ A R G + R+EI+ +TG + + Sbjct: 6 AAVNLMAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVM------- 58 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 AR+ D ++ + P FGR+A +A+QV Q VR+AE + + Sbjct: 59 -------------ARETDQDGNL--ITEWDATPEGFGRIAATTARQVFQQGVRDAENEHK 103 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDRV 182 + EF + GEI+ G ++R N V+V +G S+GVI E + E GDR+ Sbjct: 104 FGEFSTREGEIVGGVIQRDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRL 163 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 164 RCYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVA 223 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-L 301 S S ++ GAC+G G RV+ V++EL EKIDI+ + PD A FV NAL PA V V + Sbjct: 224 SKVSGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVI 283 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 DE VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 284 DEAGKAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDADPEN 331 >gi|256419698|ref|YP_003120351.1| transcription elongation factor NusA [Chitinophaga pinensis DSM 2588] gi|256034606|gb|ACU58150.1| NusA antitermination factor [Chitinophaga pinensis DSM 2588] Length = 415 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 125/403 (31%), Positives = 225/403 (55%), Gaps = 8/403 (1%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTCQ 78 +IDR ++ V+ D + R YG+ + V +N E GD+ + R +V + VE+ Q Sbjct: 18 NIDRPTLMKVLEDVFKTLLRKKYGSDENFDVIVNTEKGDLEILRRRTIVTDGEVEDDNAQ 77 Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I+ A +P +G + + + +DFGR A+ +AKQ + ++ + +++ ++ D+V Sbjct: 78 IAYSEAILVEPDYQVGEDLYEEVEILDFGRRAILAAKQTLSARIGDLKKNILVKKYADRV 137 Query: 139 GEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 GEI++G V +V V++ D ++ ++ + E I + + G+ V++ + V + P Sbjct: 138 GEIVTGEVYQVWKKEVLLLDDERNELILPKSEQIPTDYFKKGENVRAVVKKVEMKNNAPL 197 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 ++LSRTHP F+ KL +EVPEI++G++ +K + R+PG RAK+AV S D IDPVGACVGM Sbjct: 198 IILSRTHPTFLAKLLEIEVPEIFDGLIVIKKIVREPGERAKVAVESYDDRIDPVGACVGM 257 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +GSR+ +V ELR+E IDI+ ++ + + AL PA ++++ +D + V + +Q+ Sbjct: 258 KGSRIHGIVRELRNENIDIINYTANIQLLIQRALTPARISRMEVDNENKYASVFLKADQV 317 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLV 377 SLAIG++G N++LA +LTG+ ID+ +EE + ++E + L Sbjct: 318 SLAIGKKGVNIKLACELTGYEIDVFRDEEQEQAEYD-----IDLAEFSDEIEEWVLDELK 372 Query: 378 AEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 G + + + E+ +EET +I+ +E + Sbjct: 373 RIGCDTARSVLDLTVEELVRRSDLEEETVKDIRRILQEEFDKE 415 >gi|116328714|ref|YP_798434.1| transcription elongation factor NusA [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330628|ref|YP_800346.1| transcription elongation factor NusA [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121458|gb|ABJ79501.1| Transcription elongation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124317|gb|ABJ75588.1| Transcription elongation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 462 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 154/519 (29%), Positives = 237/519 (45%), Gaps = 82/519 (15%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-----------IRVEINPET 57 LL++ +KS+DR+ V+ V+ DS+ A + G + VE Sbjct: 12 LLEVIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEGLEEFEESEKPSPVTVEFASGK 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + + +VVE + +I L+ A+ D S +IG V+S P++ R+ AKQ+ Sbjct: 72 DSVVIAIAKKVVEGTPSSALEIGLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQM 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 + Q++++ E++ Y E+K K GE+ G +R + + +DLG +G++ R E E Sbjct: 132 VFQRLKDMEKELLYNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYH 191 Query: 178 PGDRVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 GDR+K+ I V R P + LSR F+ KLF ME+PEIY+G+V++ V+R P Sbjct: 192 SGDRLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSI 251 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R K+ V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA Sbjct: 252 RTKVVVRATRGEIDPVGACVGMKGVRIQSIVRELGNERIDIVEASDDASEFIANAISPAK 311 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 +V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T + + Sbjct: 312 PVEVKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVAQYNAELASPE 371 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 +E L E Sbjct: 372 ARE------------------------RLERLFYSPAEEA-------------------- 387 Query: 416 YLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + ++ EL E+L PG+ ++I L GIK +E L S DDL Sbjct: 388 -----KVAAPQEEEELTPLEDL---PGLSARIVGILKSEGIKDLETLIEYSQDDLAKLQ- 438 Query: 476 NKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEK 514 G ++ R + W+E Sbjct: 439 ----------------GIGHTTAGQILKLLRESVEWVED 461 >gi|240172759|ref|ZP_04751418.1| transcription elongation factor NusA [Mycobacterium kansasii ATCC 12478] Length = 347 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 127/348 (36%), Positives = 196/348 (56%), Gaps = 31/348 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ ++G + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLSAYRHTQGHQTDARIEIDRKSGVVRVIAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+++ IS P FGR+A +A+QV++Q+ R+AE +R Sbjct: 61 -ELDDEGNLIS-----------------EWDDTPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVSRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +D++ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQNARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPAH 330 >gi|325971224|ref|YP_004247415.1| NusA antitermination factor [Spirochaeta sp. Buddy] gi|324026462|gb|ADY13221.1| NusA antitermination factor [Spirochaeta sp. Buddy] Length = 497 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 141/495 (28%), Positives = 244/495 (49%), Gaps = 41/495 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ ++ EK+I ++V+S + D ++ A + +GT + +E + + + L + Sbjct: 4 EIGDAIRSMVAEKNISEELVISTIEDILRAAYKRKFGTDENAVIEFSEDFLSVELASRRK 63 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V++ N +I L A++ +IG + P+ DF R++VQSAKQ Q R+ Sbjct: 64 IVDDDNWYNEVTEIPLSEAKEIHEDCEIGDELLIPVDLKDFDRISVQSAKQRAHQSFRDI 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++D Y E+K K G++I G +R G++ VD+G ++G++ R SRE+ D++K Sbjct: 124 QKDTLYSEYKAKEGQLIIGYYRRQLPNGDIYVDIGTTEGLLPRRNQSSRESYGSNDKIKC 183 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +RG +V+LSRT P + KLF +EVPEI + + + R+ G R K+AV S Sbjct: 184 YVEKVEKAERGLRVVLSRTSPDLIRKLFEVEVPEIAQNQIDIIKIVREAGYRTKVAVASR 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DE 303 + IDPVGACVG++G+R+Q +++E+ EKIDI+ + + ++ NAL PA V VV+ D+ Sbjct: 244 NDDIDPVGACVGLKGNRIQTIMSEIEGEKIDILRYDTNPVNYIRNALSPAQVKDVVVLDK 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 ++ IV QLSLAIG++G NVRLA++L W ID+ T+ + Sbjct: 304 NIYHAVAIVEDTQLSLAIGKQGLNVRLANKLVDWMIDVKTQSQFDEMDIAKEARFKAESF 363 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDIT 423 + + L F + E ++ DE+ Sbjct: 364 FGTG-EPVFEEALPQLEFENTEVAVESEVETF-----VDEDEIA---------------- 401 Query: 424 LQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEK 483 L +P +DS + L + + ++E+ S +DL G+ + I Sbjct: 402 -------------LSELP-LDSMLLKKLQFHDVYSVEEFINLSDEDLTGFGDLSEEEIIA 447 Query: 484 F-DGFLSSLGTPKDQ 497 D + +D+ Sbjct: 448 IKDTINEYVDIVEDE 462 >gi|257068213|ref|YP_003154468.1| transcription termination factor NusA [Brachybacterium faecium DSM 4810] gi|256559031|gb|ACU84878.1| transcription termination factor NusA [Brachybacterium faecium DSM 4810] Length = 328 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 117/339 (34%), Positives = 194/339 (57%), Gaps = 24/339 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 A+ E+ I V+L + ++ A + D V I+ TG++++ Sbjct: 7 ALRALERERDIRLPVLLDAIRSALHAAYLHTDHPVRDSEVLIDESTGEVAV--------- 57 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 +AR+RD + D P +FGRVA +A+QVI Q++R+ E + Sbjct: 58 -----------IARERDADGVVVEEWDD--TPENFGRVAASTARQVIFQRIRDLEDEAVL 104 Query: 132 LEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 E+ D+ +I+SG +++ + V+VDLG + V+ E + E+ G R+++Y+ + R Sbjct: 105 GEYADRADDIVSGIIQQGRDPRMVLVDLGEVEAVLPPHERVPGEDYSHGRRLRAYVTEAR 164 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +GPQ+ LSR+HP + +LF +EVPE+ +G V++ ++R+ G R K++V ++ ++ Sbjct: 165 RGPKGPQITLSRSHPNLVRRLFDLEVPEVADGTVEITGLAREAGHRTKMSVRATVPGVNA 224 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309 G+C+G G+RV++V+ EL EKIDIV + D AT+V NAL P+ V+ V +DE + Sbjct: 225 KGSCIGPMGARVRSVMNELGGEKIDIVDFDEDPATYVANALSPSKVSSVTVIDEVGRAVR 284 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +VP+ QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 285 AVVPETQLSLAIGKDGQNARLAAKLTGWKIDIRPDSAPD 323 >gi|313676538|ref|YP_004054534.1| nusa antitermination factor [Marivirga tractuosa DSM 4126] gi|312943236|gb|ADR22426.1| NusA antitermination factor [Marivirga tractuosa DSM 4126] Length = 413 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 133/410 (32%), Positives = 237/410 (57%), Gaps = 10/410 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L++ A +K+IDR ++ ++ D + R Y T + + IN + GD+ ++ Sbjct: 1 MDTLNLIESFADFARQKNIDRPTMIRILEDVFKTMIRKKYETDDNFDIIINADKGDLEIW 60 Query: 64 RLLEVVEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 R E+V++ +ISL AR +P +IG V++ + FGR AV +A+Q +IQ Sbjct: 61 RFREIVDDNSEDIWDHDKISLTEARKIEPDFEIGEEVAEEVELEHFGRRAVTTARQTLIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KV++ E+D + ++ + VGEII+G V ++ ++ D ++ V+ + E I ++ R G Sbjct: 121 KVKDLEKDILFNKYSELVGEIIAGEVYQILSRETLLTDADGNELVLLKSEQIPKDRFRKG 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D V++ ++ V + P+++LSRT P F+ +LF EVPE+Y+ ++ +K + R+PG RAK+ Sbjct: 181 DSVRAVVHRVEMQNGNPKIILSRTSPVFLERLFEQEVPEVYDELITIKKIVREPGERAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 +V S D IDPVGACVGM+GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + Sbjct: 241 SVESYDDRIDPVGACVGMKGSRIHSIVRELQNENIDVINYTENMELYIQRALSPAKLSSM 300 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D + R+ V + +Q+SLAIG+ GQN++LAS+L G ID+ E D+ +E Sbjct: 301 KIDVENKRVSVYLKPDQVSLAIGKGGQNIKLASKLVGMEIDVFRELTDAEEEDVLIDEFN 360 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 +++ + L G + + + E+ + +EET EI Sbjct: 361 DV------LEDWVIEELKKVGLDTAKRVLELGREELVRMTDLEEETIDEI 404 >gi|282859024|ref|ZP_06268160.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010] gi|282588192|gb|EFB93361.1| transcription termination factor NusA [Prevotella bivia JCVIHMP010] Length = 421 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 138/413 (33%), Positives = 237/413 (57%), Gaps = 8/413 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 + +R +++ KSIDR ++SV+ +S + ++G+ + V +NP+ GD Sbjct: 6 IEEDRPNMIETFKEFKDTKSIDRTTLMSVLEESFRNVLAKIFGSDENFDVIVNPDKGDFE 65 Query: 62 LFRLLEVVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVII 119 ++R VV + + +ISL AR +P ++G VS+ + FGR A+ + +Q + Sbjct: 66 IYRNRVVVADDDVEDENKEISLTDARKLEPDFEVGEDVSEKIDFNKFGRRAILNLRQTLA 125 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRP 178 KV E E D Y ++KD+VG+II+G V + + ++VD N++ ++ + E I R+N R Sbjct: 126 SKVLELEHDSLYNKYKDRVGQIITGEVYQTWKREVLLVDEDNNEMILPKGEQIPRDNYRK 185 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 G+ +++ I+ V E P+++LSRT P+F+ +L EVPEI +G++ +K ++R PG RAK Sbjct: 186 GETIRAVIHRVDNENNNPKIILSRTAPEFLERLLEAEVPEINDGLIAIKKIARMPGERAK 245 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D IDPVGACVG+RGSRV +V EL +E ID++ W+ ++ F+ AL PA V+ Sbjct: 246 IAVESFDERIDPVGACVGVRGSRVHGIVRELCNENIDVITWTANTKLFIQRALAPAKVSS 305 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + +DE+ + EV + E++SLAIGR G N++LAS LTG+TID+ E +++ + + Sbjct: 306 LTIDEENKKAEVYLQPEEVSLAIGRGGLNIKLASMLTGYTIDVFRELDENDAEDDIYLDE 365 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQG 411 +D+ + + + G ++ + +EET + Sbjct: 366 FSD-----EIDQWVIDAIKSIGMETARQVLNAPREMLIEKADLEEETVDNVLN 413 >gi|168704029|ref|ZP_02736306.1| transcription elongation factor NusA [Gemmata obscuriglobus UQM 2246] Length = 497 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 234/426 (54%), Gaps = 36/426 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L++ D + E+ I +DV+ ++ +IQ AA + + V I+ TG I Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHIV------- 65 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 G L P+ GR+A QSAKQ+IIQK+REAE D Sbjct: 66 ----------------------AKYGD---QELDPITLGRIAAQSAKQMIIQKIREAESD 100 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + EF K E++ GTV RV+ G IV LG S+ ++ R E I E G+RVK+ I + Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGKSEALLPRSEQIPGETHHVGERVKAIIME 160 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 VR++ +++LSR HP+F+ LF E+PEI I+ ++AV+R+ G R+K+AV S D + Sbjct: 161 VRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMKV 220 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 D VGACVG+RGSR++ V+ EL E+IDIV W+ + NAL+PA ++ V +GR Sbjct: 221 DAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGRA 280 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V+V +QLSLAIGRRGQNVRLAS+L GW I+I+T +E + ++ Q Sbjct: 281 IVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELAEALERAERWFGQLPH----A 336 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKI 428 + + L+ EGF ++ +A G +E A E+ A EY + ++ +++++ Sbjct: 337 SPELTNALIEEGFLSYNDITMTDDEGLAEFTGLTQEAADEVVMYAEEYADVMERSVEEER 396 Query: 429 RELGVS 434 R+ ++ Sbjct: 397 RQAELA 402 >gi|118617680|ref|YP_906012.1| transcription elongation factor NusA [Mycobacterium ulcerans Agy99] gi|118569790|gb|ABL04541.1| N utilization substance protein a NusA [Mycobacterium ulcerans Agy99] Length = 347 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 31/365 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVM------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 59 --------------ARETDDDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVSRGSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D FV NAL PA V V Sbjct: 223 RSNVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWWIDIRGDSPEQSAEHPERGASRG 342 Query: 361 FFMQA 365 Sbjct: 343 LAHDH 347 >gi|255994863|ref|ZP_05427998.1| transcription termination factor NusA [Eubacterium saphenum ATCC 49989] gi|255993576|gb|EEU03665.1| transcription termination factor NusA [Eubacterium saphenum ATCC 49989] Length = 367 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 138/360 (38%), Positives = 214/360 (59%), Gaps = 1/360 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+++ + E I +D ++ +M +S+ A YG S V+I+ +TG + Sbjct: 2 NKEIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIVS 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 ++V EVEN ++SL + D + GGVV + FGR+A Q+AKQV +QK++E Sbjct: 62 KDIVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKER 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 E+ + + EFK + GEII+G V RV + V L + +I E I E GDR+K+ Sbjct: 122 EKQKIFSEFKGREGEIITGKVSRVTMRAIHVALNTTTAIIPLAEQIQGETYEVGDRIKAC 181 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I V QRGPQ++LSR PQF+ +LF EVPEI NG V++ ++R+ G+R K+AV+S + Sbjct: 182 IKTVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYSDN 241 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +D VGAC+G+RG+R+ A++ +L EK+D+V+W+ D FV A++PA +++L E+ Sbjct: 242 EELDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLEED 301 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 I VIV ++LSLAIGR+GQNVRLAS+L +ID+ T++ F + Sbjct: 302 KVI-VIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKDGLKEMIDNGEITGIDFEEEE 360 >gi|269120926|ref|YP_003309103.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386] gi|268614804|gb|ACZ09172.1| NusA antitermination factor [Sebaldella termitidis ATCC 33386] Length = 358 Score = 276 bits (705), Expect = 8e-72, Method: Composition-based stats. Identities = 131/330 (39%), Positives = 203/330 (61%), Gaps = 3/330 (0%) Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDR 87 L + ++ A + YG + V+IN +TG++ +F E+V+EVEN +ISL A++ Sbjct: 28 LEAVETALLAAYKKNYGEKENAEVKINHDTGEVKVFSRKEIVDEVENPEYEISLDDAKNF 87 Query: 88 DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVK 147 +GGVV + DF R A+Q+AKQ++IQKVRE E+ Y FK+K I++G V+ Sbjct: 88 KKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQKVRECEKQNIYNNFKEKENSIVTGIVR 147 Query: 148 R-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 + E G++ +D+ + +I E + + GDRVK YI V + + +SR + Sbjct: 148 KVDEKGSLYIDINGLEAIIPEKELSDTDVFKQGDRVKVYIGKVEEGTKFTKTFISRKSEE 207 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266 + KLF +E+PEI +G++ +K+V+R+ GSR K+A++S D ++D GAC+G G R+Q+++ Sbjct: 208 MIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKVAIYSDDPNLDVKGACIGKGGMRIQSII 267 Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRR 324 EL+ EKIDIV+W+ D FV NAL PA V V + ED G +V V +QLSLAIG++ Sbjct: 268 DELKGEKIDIVLWNEDIRYFVKNALNPAEVISVEIIEDNGEEVAKVEVASDQLSLAIGKK 327 Query: 325 GQNVRLASQLTGWTIDIITEEEDSINRQKD 354 GQN RLA++L G IDI T E + ++ Sbjct: 328 GQNSRLAAKLCGIKIDIFTSELPDDSEPEE 357 >gi|313886723|ref|ZP_07820432.1| transcription termination factor NusA [Porphyromonas asaccharolytica PR426713P-I] gi|312923825|gb|EFR34625.1| transcription termination factor NusA [Porphyromonas asaccharolytica PR426713P-I] Length = 469 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 242/469 (51%), Gaps = 28/469 (5%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V + + ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + LAIG+ N++LAS LTG+ I++ + D+ +E + +++ + +L Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLSEFSD------EIEDWVIKML 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + G + +E+ + ET + +R L + Sbjct: 375 LDIGLNTARAVLTTSRTELLKKTDLEIETIDRV------------------LRILSSEFD 416 Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 L + + + + L ++ I T +++A ++DL Sbjct: 417 LEELEEMGLPQENIDLLKSPIPTQKEIAQAIIEDLKEDETTAEPQPTDE 465 >gi|223984472|ref|ZP_03634605.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM 12042] gi|223963543|gb|EEF67922.1| hypothetical protein HOLDEFILI_01899 [Holdemania filiformis DSM 12042] Length = 571 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 139/404 (34%), Positives = 225/404 (55%), Gaps = 5/404 (1%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISL 62 N E L+ + ++ I +++V++ + +++ KA R +RV+IN G I + Sbjct: 1 MNFKEFLKAMQTIEDDRKITKEIVIAALQEALAKAYRKHIDIPDVLVRVDINEANGQIHV 60 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 ++ VVEEVE+ +++L + D +G +V + GR A AK V+ QK+ Sbjct: 61 YQQYTVVEEVEDEELEVALADVK--DKGYQLGDLVDHEVDISQIGRAAALLAKNVMKQKI 118 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 REAE+ Y E+ D++ E+++G ++ VE V+V+LG + ++ R I E G + Sbjct: 119 REAEKQAVYDEYIDQLDEMVTGMIESVEEKFVVVNLGKTMALMPRAAQIPGERYVEGQSI 178 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + I + ++ +G QVL+SR+ + + +LF EVPEIY G+V++KA++R+ G R K+AV+ Sbjct: 179 RVVITECNKDTKGAQVLVSRSDAKLVKRLFEKEVPEIYQGVVEIKAIAREAGERTKMAVW 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S++ +D +GAC+G RGSRVQ V+ EL+ EKIDI WS + + + NAL PA + V+ Sbjct: 239 SNNPDVDAIGACIGPRGSRVQVVIDELKGEKIDIFEWSDNISELIKNALAPAQILAVLPT 298 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--EEEDSINRQKDFNERTQ 360 ED + V+V QLSLAIG++G+N RLA +LTG IDI T E E+ K + Sbjct: 299 EDKRSLLVVVEDNQLSLAIGKKGKNARLAVKLTGMRIDIKTAGEIEEQGIDWKTMMLQFA 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 Q ++ IA L G +VE + + EE Sbjct: 359 AEEQKRLAEQRIAKQLEEAGVQEVETEPDDEQEAVIETPEVSEE 402 >gi|332300247|ref|YP_004442168.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM 20707] gi|332177310|gb|AEE13000.1| NusA antitermination factor [Porphyromonas asaccharolytica DSM 20707] Length = 469 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 242/469 (51%), Gaps = 28/469 (5%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID + +L V+ DS + ++G+ + V IN ++GD ++R EVV + VE Sbjct: 21 KNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGDFEIWRTREVVADDAVERENE 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 Q++ AR+ DP +IG V+D + + FGR A+ + +Q + K+ + +++ Y F ++ Sbjct: 81 QVAYTEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQTLSSKILDLQKEHFYQTFIER 140 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VGE+I+ V + + ++VD ++ ++ + E I E R GD V + I V E P Sbjct: 141 VGELITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYFRKGDSVHAVIARVDNENNNP 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +V LSRT P+F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVG+CVG Sbjct: 201 RVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVRAKIAVESYDDRIDPVGSCVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL E ID++ ++ + + F+ AL PA ++ + L + + EV + E Sbjct: 261 MNGSRIRGIVRELHGENIDVLTYTANDSLFIQRALSPAKISSIELYPETAKAEVYLRPED 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 + LAIG+ N++LAS LTG+ I++ + D+ +E + +++ + +L Sbjct: 321 VPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLSEFSD------EIEDWVIKML 374 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 + G + +E+ + ET + +R L + Sbjct: 375 LDIGLNTARAVLTTSRTELLKKTDLELETIDRV------------------LRILSSEFD 416 Query: 437 LCSIPGID-SKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 L + + + + L ++ + T +++A ++DL Sbjct: 417 LEELEEMGLPQENIDLLKSPVPTQKEIAQAIIEDLKEDETTAEPQPTDE 465 >gi|328948922|ref|YP_004366259.1| NusA antitermination factor [Treponema succinifaciens DSM 2489] gi|328449246|gb|AEB14962.1| NusA antitermination factor [Treponema succinifaciens DSM 2489] Length = 484 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 197/374 (52%), Gaps = 3/374 (0%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTM-SDIRVEINPETGDISLFRLL 66 E+ A++ EK ID + + I A + +G + V+ + D++++ Sbjct: 3 EMADAIRALSAEKGIDESSIRQTIERMILAAYQKSFGKGYDNCIVKFADDMSDVNVYARK 62 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM-DFGRVAVQSAKQVIIQKVREA 125 VV+ V + +I L+ A+ P I + PL P DF R AV KQ + + E Sbjct: 63 TVVDGVYDPVIEIELEEAQKLAPEAVIHDTLDIPLDPKRDFERGAVSVGKQEAHKDLNEN 122 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + E+K+K+G+II G +R GN+ V+LG +GV+ RE DR+++ Sbjct: 123 SSKKLLDEYKEKLGQIIIGYYQREHKGNIYVELGKVEGVLPVKYQSPREVYEKNDRIRAL 182 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 I DV++ G QV+LSRT F+ + +EVPEI + + VK++SR+PG R K+AV S+ Sbjct: 183 IKDVKKVPSGIQVVLSRTDENFVKSILELEVPEIQDNTIVVKSISREPGYRTKIAVASNK 242 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DPVGACVG++G R+Q V+ EL EKID++ + D F+ NAL PA V VV+ D + Sbjct: 243 IDVDPVGACVGLKGVRIQNVIRELEGEKIDVLRYDEDPHVFIKNALSPAEVKHVVIKDAE 302 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 +V E S+AIG++G NVRLA++L W+ID+ TE + + + R Sbjct: 303 KREALAVVSDENFSIAIGKQGLNVRLANRLCNWSIDVKTEAMVTDEDLVENDTRRAAEEL 362 Query: 365 AINVDEIIAHLLVA 378 + ++ Sbjct: 363 FGGSENESYEEILT 376 >gi|320537771|ref|ZP_08037693.1| transcription termination factor NusA [Treponema phagedenis F0421] gi|320145361|gb|EFW37055.1| transcription termination factor NusA [Treponema phagedenis F0421] Length = 488 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 148/445 (33%), Positives = 238/445 (53%), Gaps = 18/445 (4%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 A EK +D D+ ++ +++ A ++ + T + V +S++ +VV+EV Sbjct: 9 IRRFAQEKEMDEDLAFKIVEQTLKAAYKTTFKTDENAVVTFGDN--HVSIYSRKKVVDEV 66 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 ++ +I L+ A+ + ++G + L P +F R +VQ+A Q I Q RE ++D Y Sbjct: 67 DDDVTEIDLEDAKKLTENAELGDELLVELDPENFKRGSVQAAVQRIHQLSRELQKDSLYA 126 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 E+K K GEII G +R+ G++ VDLG +GV+ R I E DR+K+ I +V++ Sbjct: 127 EYKSKEGEIIIGYFQRMREGSIYVDLGKVEGVLPRKYQIPGEEFHQNDRIKALIREVKKH 186 Query: 193 Q-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 Q Q++LSRT F+ L E+PEIY+GIV++ + R+PG R K+AVF+ IDPV Sbjct: 187 QSNLVQLILSRTDADFVRGLLSSEIPEIYDGIVEIHKIVREPGYRTKVAVFTRREDIDPV 246 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEV 310 GACVG RG+R+Q ++ EL DEKID+V +S D A F+ NAL PA V V++ DE+ Sbjct: 247 GACVGQRGARIQTIIKELDDEKIDVVEYSDDPAEFIRNALSPAEVLNVIILDEEKRSALA 306 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR--------------QKDFN 356 +V QLS+AIG++G NVRLA++L W+ID+ TE++ + + Sbjct: 307 VVSDSQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFAEMEVVTDSRKAAEELFSDDEEV 366 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + N+D I +L G ++E L + +E+ ++EG E E+ E Sbjct: 367 AEYDIQEELPNLDPAIITILHQNGIKEIETLVNLSENEVRALEGMTSEYVEELFKEINEN 426 Query: 417 LEGIDITLQKKIRELGVSEELCSIP 441 E + + + E+L Sbjct: 427 FEIVQEERIDEPEQTNTEEQLPEYE 451 >gi|325677914|ref|ZP_08157556.1| transcription termination factor NusA [Ruminococcus albus 8] gi|324110468|gb|EGC04642.1| transcription termination factor NusA [Ruminococcus albus 8] Length = 372 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 208/359 (57%), Gaps = 22/359 (6%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + E IDR+V++ + D+I KA + G+ ++RV+I+P TG + ++ L Sbjct: 2 NEQFFNALADLVSENEIDREVLIEKIRDAITKAIKKETGSE-NVRVDIDPATGKLEMYIL 60 Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EV V V+ +I + A+ DP I +G V P+ P GRVA Q AKQ I ++ Sbjct: 61 KEVMKVMFVDEPENEIYIGEAQAYDPDIKVGDFVEIPVNPAKIGRVAAQFAKQSIKHDIK 120 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + ER++ ++KD+ EI++ TV++VE GN I+ + ++ R E I E L+ GD+ Sbjct: 121 DFERNKLIEQYKDREHEIVTATVQKVEPATGNAIITIDKNEHYFYRSEQIPGEVLKEGDK 180 Query: 182 VKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K YI + E+R P V LSRTH + +LF +EVPEI +G V+VKA+SR G R+K+A Sbjct: 181 IKVYIVSLGDSEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEVKAISRTEGVRSKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S D ++D VGAC+G + SR+ AV EL+ EKID++ W D F+ AL PA V KV Sbjct: 241 VWSKDPNVDAVGACIGPKKSRITAVCQELKGEKIDVINWVEDEEQFIAKALAPAEVLKVE 300 Query: 301 LDEDV----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 L E + V+VP Q SLAIG +GQN +LA+ LTG+ IDI+ Sbjct: 301 LLEPEVRIEHKGEEKEFERVIKKCRVVVPNNQFSLAIGNKGQNAKLAAGLTGYKIDIVP 359 >gi|255536444|ref|YP_003096815.1| transcription elongation factor NusA [Flavobacteriaceae bacterium 3519-10] gi|255342640|gb|ACU08753.1| Transcription termination protein NusA [Flavobacteriaceae bacterium 3519-10] Length = 415 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 123/419 (29%), Positives = 228/419 (54%), Gaps = 7/419 (1%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L++ EKSI + +++++ DS++ R + + V +NP+ GD +F Sbjct: 1 MDGLALIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIF 60 Query: 64 RLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE+ E+ +I + A+ DP+ ++G + +P GR ++ + KQ++ K Sbjct: 61 LNKTIVEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 ++E Y EF+DK+GEI+ G V + + +VI +D +++ ++ ++ I + + G+ Sbjct: 121 LQEHNNAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+A Sbjct: 181 NIRTIVESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVG++GSR+ VV EL++E ID++ WS + V AL V K+ Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ V P E++S IG++GQN+RLAS L+G+ ID+ E + + + + Sbjct: 301 INEETKYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDVHRESAEDDDVELKEFAGSD 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++++ I G + + + + +EET E++ +E E Sbjct: 361 AG----DIEQWIIDEFNKVGLTTAKSVLDKDTEALLKMVDLEEETIEEVKQILKEEFED 415 >gi|294675008|ref|YP_003575624.1| transcription termination factor NusA [Prevotella ruminicola 23] gi|294472210|gb|ADE81599.1| transcription termination factor NusA [Prevotella ruminicola 23] Length = 408 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 129/402 (32%), Positives = 225/402 (55%), Gaps = 8/402 (1%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR ++SV+ +S + ++G+ + V +NP+ GD + R VV + V + Sbjct: 12 KNIDRTTLVSVLEESFRNVIAKIFGSDENFDVIVNPDKGDFEIHRNRVVVPDGEVMDENK 71 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +I L A+ +P ++G VS+ + FGR A+ + +Q + K+ E E D Y ++KDK Sbjct: 72 EIELSEAQKIEPDYEVGEEVSEEVQFAKFGRRAILNLRQTLASKILELEHDSLYQKYKDK 131 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 V +++SG V + + +++D ++ + + E I +N G+ V++ + +V+ E P Sbjct: 132 VHQVVSGEVYQIWKREVLLIDDEGNELHLPKQEQIPGDNYHKGETVRAVVKEVQNENNNP 191 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 +++LSRT P F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 192 RIILSRTSPVFLERLLEAEVPEIQDGLITIKRVARIPGDRAKVAVESYDDRIDPVGACVG 251 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 ++GSRV +V EL +E ID++ +S ++ F+ AL PA ++ + LD++ + EV + E+ Sbjct: 252 VKGSRVHGIVRELCNENIDVINYSANTQLFIQRALSPAKISSINLDQENHKAEVYLQPEE 311 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +SLAIGR G N++LAS LT +TID+ + + + + +D+ + + Sbjct: 312 VSLAIGRGGMNIKLASMLTEYTIDVFRVLNEGEADEDIYLDEFSD-----EIDQWVIDAI 366 Query: 377 VAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 A G + + + +EET ++ R E Sbjct: 367 KAIGLDTAKAVLNAPREMLIEKADLEEETVDQLLDVLRAEFE 408 >gi|120403303|ref|YP_953132.1| transcription elongation factor NusA [Mycobacterium vanbaalenii PYR-1] gi|119956121|gb|ABM13126.1| NusA antitermination factor [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 130/349 (37%), Positives = 196/349 (56%), Gaps = 31/349 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ +K I DVV+ + ++ A R G +D ++I+ +TG + + Sbjct: 1 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKV------- 53 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR D ++ + P FGR+A +A+QVI+Q++R+AE ++ Sbjct: 54 -------------IARQTDEDGNV--LHEWDDTPEGFGRIAATTARQVILQRLRDAENEK 98 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y EF + G+I++G ++R N V+V +G S+GVI E + E GDR Sbjct: 99 NYGEFSAREGDIVAGVIQRDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDR 158 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 159 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 218 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 219 ATRAPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTV 278 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 +DE VIVP QLSLAIG+ GQN RLA++LTGW IDI +++ Sbjct: 279 IDEAARAARVIVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDDAAKE 327 >gi|124002855|ref|ZP_01687707.1| transcription termination factor NusA [Microscilla marina ATCC 23134] gi|123992083|gb|EAY31470.1| transcription termination factor NusA [Microscilla marina ATCC 23134] Length = 423 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 126/413 (30%), Positives = 226/413 (54%), Gaps = 12/413 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 ++ E++ A K+ID+ ++ V+ + + R Y + + V +N E GD+ ++ Sbjct: 1 MDKQEIISSFAEFARAKNIDKVLMEQVLEEVFRTMIRKKYTSDENFDVIVNIEDGDLEMY 60 Query: 64 RLLEVVEEVENYTCQ---ISLKVARDRDPSI---DIGGVVSDPLPPMDFGRVAVQSAKQV 117 R +VE+ + ++L A+ DP I DIG + DFGR A+ +A+Q Sbjct: 61 RNRIIVEDDSPEAQELDKVTLSEAKKIDPEIAEEDIGDEFPQTVYLSDFGRRAILTARQT 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENL 176 +IQK+++ E++ YL++KD EI+ V ++ +++D ++ + ++E I ++ Sbjct: 121 LIQKIKDVEKENLYLKYKDMTDEIVVTEVHQILSRELLLLDSEGNELSLPKNELIPKDRY 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 R G+ K+ ++ V P+++LSRT P F+ +LF E+PE+Y+G++ +K V R PG R Sbjct: 181 RKGEMSKAVVHRVDMINGNPKIILSRTSPIFLERLFESEIPEVYDGLITIKKVVRQPGER 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S D IDPVGACVGM+GSR+ ++V EL +E ID++ ++ + ++ AL PA + Sbjct: 241 AKVAVESYDDRIDPVGACVGMKGSRIHSIVRELNNENIDVINYTDNLDLYITRALSPAKI 300 Query: 297 TKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 T + + ED GR+ V + +Q+SLAIG+ G N++LAS+L G ID+ + ++ + Sbjct: 301 TSIKM-EDDGRVSVFLKPDQVSLAIGKGGHNIKLASKLVGMEIDVYRDMDEYEIEEDIEL 359 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ I L G + + V + + +EET + Sbjct: 360 SEFDDE----EIEPWIRDELRRLGMETAKSVLNVGRELLINRSELEEETVDYL 408 >gi|325954923|ref|YP_004238583.1| NusA antitermination factor [Weeksella virosa DSM 16922] gi|323437541|gb|ADX68005.1| NusA antitermination factor [Weeksella virosa DSM 16922] Length = 411 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 130/419 (31%), Positives = 232/419 (55%), Gaps = 11/419 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L++ +K+IDR +++++ +++Q R YG+ + + +NP+ GD+ ++ Sbjct: 1 MDNLALIESFGDFKDDKNIDRITLMAIIEEALQVVLRKKYGSDDNFDIIVNPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VVE+ E+ + +I L AR +P +IG VS+ +P + GR A+ + +Q + K Sbjct: 61 HNRIVVEDGFSEDDSAEIELSEARKIEPDFEIGEEVSELIPIENLGRRAILTLRQTLSAK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FK+ GEI+SG V +I+D ++ ++ ++ I + R G+ Sbjct: 121 IMEHDNANLYDKFKELEGEIVSGEVHHIRHKHIIIMDDEQNEMILPKENQIPSDFFRKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ + +V PQ++LSRT P+F+ KLF E+PEI++G++ +K V R PG +AK+A Sbjct: 181 TVRAIVDEVVLRGAKPQIVLSRTAPKFLEKLFEQEIPEIFDGLITIKKVVRIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVGM+GSR+ ++V ELR+E ID++ ++ + ++ AL PA ++ Sbjct: 241 VESYDDRIDPVGACVGMKGSRIHSIVRELRNENIDVINYTTNLNLYIARALSPAKISSAE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DE+ +I V V E++S AIG+ G NV+LAS+L IDI E + + Sbjct: 301 IDEENHKILVHVKPEEVSKAIGKGGYNVKLASRLLDMEIDIFREGIQDEDVELTEFSD-- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +D+ + A G + + ++++ +EET ++ +E E Sbjct: 359 ------EIDQWVIEAFKAIGLDTAKSVLEQDVNDLIKRTDLEEETIEDVIRILKEEFED 411 >gi|225619365|ref|YP_002720591.1| transcription elongation factor NusA [Brachyspira hyodysenteriae WA1] gi|225214184|gb|ACN82918.1| putative transcription elongation factor NusA [Brachyspira hyodysenteriae WA1] Length = 496 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 126/448 (28%), Positives = 234/448 (52%), Gaps = 35/448 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 ++ EK I +++ V+A +++ A + YG + + + + ++++ VVEEV Sbjct: 9 LQQLSDEKDISVELLKEVIASTMELALKKKYGDDIKFHIHFDNKN-NPTVYKGASVVEEV 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMD-FGRVAVQSAKQVIIQKVREAERDRQY 131 N +ISL+ A+ D I++G V + ++ FGR+ A+ QK+ E E++ Y Sbjct: 68 RNKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESTVARTAFFQKISELEKNIIY 127 Query: 132 LEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 EFK + ++++G +R G + ++LG ++G +++ + RE+ GDR+++YIY V+ Sbjct: 128 NEFKRRENQLVNGYFQREHRGTIYINLGKTEGELQKKDQSPREHYTVGDRIRAYIYKVQG 187 Query: 192 EQRGP------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + ++LL+RT P F+ KLF +E+PEI +G +++K V R PG + K+AV S+ Sbjct: 188 GKDEKGKEIHTKILLTRTKPDFIKKLFELEIPEIADGTIEIKNVVRQPGLKIKVAVASNK 247 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DP+GAC+G +G R+Q+++ E+ EKID+V WS D ++ A+ PA ++++ D + Sbjct: 248 PEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAKPIRIIITDPE 307 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE------------------- 345 +I+P EQLSLA+G+ G NV+LASQLTG+ DI TE Sbjct: 308 KKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELLKDIVPLNQIF 367 Query: 346 -------EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI 398 + + + +DE I L+ +EEL + + +I Sbjct: 368 SDNTEEVQAADEELETAEVFESNLYSLQGIDEAIIKTLIDNNINSIEELYNMSVEDIMEK 427 Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQK 426 + + + ++ +E ++ + + Sbjct: 428 TNLERDIVDNLMLVMKDVVEVVEASDDE 455 >gi|218670845|ref|ZP_03520516.1| transcription elongation factor NusA [Rhizobium etli GR56] Length = 276 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 199/274 (72%), Positives = 234/274 (85%) Query: 165 IRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+ LSRTHPQFMVKLF MEVPEIY+GI+ Sbjct: 2 IRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVPEIYDGII 61 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV EL+ EKIDI+ WS D A Sbjct: 62 QVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWSQDPA 121 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 TFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQNVRLASQLTGW IDI+TE Sbjct: 122 TFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQLTGWDIDIMTE 181 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E+S RQK+FNERT FM +++VDE++ +L +EGFA VEELA V + EIASI+GFDEE Sbjct: 182 AEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEELAYVDLDEIASIDGFDEE 241 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELC 438 TA EIQ RARE+LE ++ + +K + LGV +EL Sbjct: 242 TAQEIQQRAREFLERLEAEMDEKRKALGVEDELR 275 >gi|325294242|ref|YP_004280756.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064690|gb|ADY72697.1| NusA antitermination factor [Desulfurobacterium thermolithotrophum DSM 11699] Length = 374 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 143/348 (41%), Positives = 216/348 (62%), Gaps = 20/348 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 + + EK I ++ V+ + I AAR G + V+I+ + D +F+ VVE+V Sbjct: 8 VELLCREKGISKEDVVKAVKVGIINAARKA-GYKGHLVVKIDEDGKDFGIFQEKTVVEDV 66 Query: 73 ENYTCQISLKVARDR-DPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 ++ +ISL+ A++ S+ +G V + + GR+A ++A QVI +K+ EAER Y Sbjct: 67 KDIDYEISLEEAKELFGDSVKLGDKVLVEIKTEELGRIAAKAAAQVIHEKISEAERKALY 126 Query: 132 LEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 FK+KVG+IISGTVK ++ +VI+DLG G++ ++E IS+E R GDRV++YIYDV Sbjct: 127 DYFKEKVGDIISGTVKEIKRNGDVILDLGRIVGILPKEEQISKEKYRIGDRVRAYIYDVV 186 Query: 191 REQRGP--------------QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + + V+LSRTHP+F+ +L +E+PE+ +G+V++KAV+R+PG R Sbjct: 187 FDYKRYNRRKPSKIDDYPPPYVILSRTHPKFLKRLMEIEIPEVADGLVEIKAVAREPGIR 246 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+AV S + IDPVGAC+G++GSR+ + EL EKI+I+ W+ D A V L PA V Sbjct: 247 AKVAVDSKEEYIDPVGACIGVKGSRILPISRELSGEKIEIIRWTDDVAELVARVLSPAKV 306 Query: 297 TKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + ED R+EV+VP +QLSLAIG+ G N RLAS+L G + I Sbjct: 307 LQSESYEDENGELRVEVVVPDDQLSLAIGKHGVNARLASKLVGQIVGI 354 >gi|313140899|ref|ZP_07803092.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] gi|313133409|gb|EFR51026.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] Length = 344 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 195/331 (58%), Gaps = 17/331 (5%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73 +A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E Sbjct: 12 QLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTE 71 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + P+ ++G D P +FGR+A +A+QVI Q R+AE D+ + Sbjct: 72 DDPH-----------PAPELGEEYDD--TPRNFGRLAAATARQVIGQLFRKAEDDKVFGA 118 Query: 134 FKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 F + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 119 FSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVAR 178 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 179 GVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPK 238 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEV 310 GA +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V + E Sbjct: 239 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIA 298 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 299 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 329 >gi|224283743|ref|ZP_03647065.1| transcription elongation factor NusA [Bifidobacterium bifidum NCIMB 41171] gi|310287990|ref|YP_003939249.1| transcription elongation factor NusA [Bifidobacterium bifidum S17] gi|311064863|ref|YP_003971589.1| n utilization substance protein A NusA [Bifidobacterium bifidum PRL2010] gi|309251927|gb|ADO53675.1| transcription elongation factor NusA [Bifidobacterium bifidum S17] gi|310867183|gb|ADP36552.1| NusA N utilization substance protein A [Bifidobacterium bifidum PRL2010] Length = 342 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 195/331 (58%), Gaps = 17/331 (5%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVE 73 +A E+ ID + + + + ++++ A RVE++ G +++ E+ VE E Sbjct: 10 QLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTE 69 Query: 74 NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + P+ ++G D P +FGR+A +A+QVI Q R+AE D+ + Sbjct: 70 DDPH-----------PAPELGEEYDD--TPRNFGRLAAATARQVIGQLFRKAEDDKVFGA 116 Query: 134 FKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRR 191 F + G++++G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 117 FSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVAR 176 Query: 192 EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPV 251 +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 177 GVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPK 236 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEV 310 GA +G G+RV+AV+ L EKIDIV WS D A FV +AL PA+ T V + E Sbjct: 237 GALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIA 296 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 297 FIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|229496539|ref|ZP_04390253.1| transcription termination factor NusA [Porphyromonas endodontalis ATCC 35406] gi|229316436|gb|EEN82355.1| transcription termination factor NusA [Porphyromonas endodontalis ATCC 35406] Length = 455 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 128/427 (29%), Positives = 230/427 (53%), Gaps = 13/427 (3%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+ID++ +++V+ + ++GT + + ++PE GD+ ++R VV + V+N Sbjct: 21 KNIDKETLINVLKSAFMSVLSKMFGTDENFTIIVSPEMGDLEIWRNRMVVADGSVQNPNL 80 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 +ISL A DP +IG V+D + FGR A+ + +Q + KV E +++ Y +F+++ Sbjct: 81 EISLSDALPLDPDAEIGSEVTDSINFASFGRRAILNLRQALQGKVLELQKENLYKKFQER 140 Query: 138 VGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGP 196 VG+++S V + + ++VD ++ ++ + E I + R G+ V + I V E Sbjct: 141 VGQMVSAEVYQVWKREALLVDDEGNELLLPKSEQIPGDYFRKGESVHAVIDHVDYENNNI 200 Query: 197 QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVG 256 ++ +SRT +F+ +LF + VPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG Sbjct: 201 KIYVSRTSQEFLKRLFELNVPEIGDGLITIKRVARIPGERAKMAVESYDDRIDPVGACVG 260 Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M GSR++ +V EL+ E ID++ ++ +S+ FV AL PA V+ + + + + EV + E+ Sbjct: 261 MNGSRIRGIVRELKGENIDVMSYTTNSSLFVQRALSPAKVSSIEILPEELKAEVYLSPEE 320 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDI---ITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 + +AIG+ N++LAS LTG+ I++ I E ++ +FN+ + ++ + + Sbjct: 321 VPMAIGKNASNIKLASALTGYKIEVFRDIEENDEEDIFLNEFNDEIEDWVLEVLKNIGCN 380 Query: 374 HLLVAEGFADVEELACVKISEIAS-------IEGFDEETAVEIQGRAREYLEGIDITLQK 426 L E ++ + E FD E I A E E ++I Sbjct: 381 TALSVLRIPRAELISKADLEESTVDHVLEVLSSEFDPEELERIGFTAPEATEEVEIEGGA 440 Query: 427 KIRELGV 433 + Sbjct: 441 DSEDSKP 447 >gi|254821852|ref|ZP_05226853.1| transcription elongation factor NusA [Mycobacterium intracellulare ATCC 13950] Length = 348 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 130/365 (35%), Positives = 197/365 (53%), Gaps = 31/365 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEDDNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI + V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADESVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +D V+VP QLSLAIG+ GQN RLA++LTGW IDI + + + T Sbjct: 283 IDPSARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGHPENEPEHGATH 342 Query: 361 FFMQA 365 Sbjct: 343 GMAHD 347 >gi|50954461|ref|YP_061749.1| transcription elongation factor NusA [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950943|gb|AAT88644.1| transcription termination/antitermination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 332 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 192/350 (54%), Gaps = 31/350 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-------YGTMSDIRVEINPETGDISL 62 L + + E+ I + ++ ++ +I A +G RV ++ +TG +++ Sbjct: 5 LSVLRLMEREREIPFEELVQIIEQAILTAYLKHTDQADHRHGEPPAARVHLDRKTGHVTV 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 + V E ++ I P DFGR+A +AKQVI Q++ Sbjct: 65 Y-----VPERDDDGNVIG-----------------EAEDSPSDFGRIAAFAAKQVINQRL 102 Query: 123 REAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 R+ D EF+ G+I++G +++ V +DLG+ + ++ +E + E G R Sbjct: 103 RDLADDAVLGEFRGCEGDIVAGVIQQGPNPRMVHIDLGSVEAILPPEEQVHGEEYPHGSR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V + +GP + +SRTHP + KLF +EVPEI +G+V++ +++R+ G R K+AV Sbjct: 163 IRVYVTSVAKGPKGPSITVSRTHPTLVRKLFALEVPEIASGVVEIVSIAREAGHRTKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VV 300 +++ ++ GAC+G G RV+AV EL EKIDIV +SPD ATFV +AL PA VT V Sbjct: 223 RATEPGVNAKGACIGELGQRVRAVTAELNSEKIDIVDYSPDLATFVSSALSPAKVTSAFV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +DE + + +VP QLSLAIG+ GQN RLA++LTG IDI + Sbjct: 283 IDESLKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILDRE 332 >gi|15827820|ref|NP_302083.1| transcription elongation factor NusA [Mycobacterium leprae TN] gi|221230297|ref|YP_002503713.1| transcription elongation factor NusA [Mycobacterium leprae Br4923] gi|20139308|sp|Q9Z5J1|NUSA_MYCLE RecName: Full=Transcription elongation protein nusA gi|4455676|emb|CAB36568.1| putative transcriptional termination/antitermination factor [Mycobacterium leprae] gi|13093372|emb|CAC30509.1| probable transcription termination/antitermination factor [Mycobacterium leprae] gi|219933404|emb|CAR71653.1| probable transcription termination/antitermination factor [Mycobacterium leprae Br4923] Length = 347 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 127/347 (36%), Positives = 193/347 (55%), Gaps = 31/347 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G D R++I+ +TG + + Sbjct: 5 MAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EV++ IS P FGR+A +A+QV++Q+ R+AE +R Sbjct: 61 -EVDDDGNVIS-----------------EWDDTPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G+ S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ +V+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 ASRVPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPP 329 >gi|152991227|ref|YP_001356949.1| transcription elongation factor NusA [Nitratiruptor sp. SB155-2] gi|151423088|dbj|BAF70592.1| transcription termination factor NusA [Nitratiruptor sp. SB155-2] Length = 371 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 9/347 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ I D++A+EK + + V + + + A+ + G + EI+P+T I +F+ + V Sbjct: 4 IVDIIDSIAHEKGLPVEQVKEAIQKAFENTAKKVLGEDLEFEAEIDPDTKSIKVFQKILV 63 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VE+ + I+L A++ DP++++G + P+ GR A I ++ Sbjct: 64 VEDGDERATQEPERYITLSEAKEIDPNVEVGDELRYPVEFEKLGRTAAMRLHNEIEFHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K ++G IISGTV R E N V++ G++ + I E +PGD V Sbjct: 124 RLMEQQLFEKYKQRIGTIISGTVTRVDEEENTYVEIDEVKGILPKRYRIKGEFFKPGDVV 183 Query: 183 KSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ + V ++ G + LSRT P+F+ +L +EVPEI +G+V ++ V+R PG RAK+AV Sbjct: 184 KAILKRVVFDKINGIYLELSRTTPKFLEELLKLEVPEIKDGLVTIEKVARIPGERAKVAV 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S IDPVGACVG+RG R+ AV ELR E ID + +SP FV +L PAI+T V + Sbjct: 244 NSHSPKIDPVGACVGVRGVRINAVSKELRGENIDCIEYSPIPEIFVARSLSPAIITSVKI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + + V +P +Q S AIG+ G N+RLAS LTG+ I++I E + Sbjct: 304 --EGDKAIVTLPSDQKSKAIGKSGINIRLASMLTGYEIELIETEGSA 348 >gi|110005298|emb|CAK99622.1| putative transcription termination factor protein [Spiroplasma citri] Length = 471 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 122/405 (30%), Positives = 223/405 (55%), Gaps = 1/405 (0%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + +LL + + EK I RD++L + + I+KA + + + V+I+ +TG I + + Sbjct: 3 DGTKLLTTINEIVSEKQISRDLILDSIKEGIKKAYEKHFDPEATVFVDIDQKTGQIKVEK 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L VV++VE+ +I L A+++ I I V +P+ +F R+A+ Q+I Q+++ Sbjct: 63 ELTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEPVNSEEFSRLAIFQVGQIIKQQIK 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAE+D + E+ + G +++G V E ++V++ + I R I ++ G + Sbjct: 123 EAEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSDHFEVGQPIT 182 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 DV + + Q+ SRT F+ +L E+PEI+ +++VKA++RDPG R+K+AV+S Sbjct: 183 FLAEDVIKSKNAGQITGSRTSNDFLYRLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 242 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + ++ Sbjct: 243 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 302 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +VIVP EQLSLAIG+ G +L ++LT W ++I++ E + + Sbjct: 303 EGKEADVIVPDEQLSLAIGKGGSAAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 362 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + + + + + + + E +E+ A E Sbjct: 363 ELSTLQVKLKDKIKPKTTVETNTVDGAVDLPVEEFEIIEEQMAEE 407 >gi|76496362|gb|ABA43692.1| NusA [Spiroplasma kunkelii CR2-3x] Length = 483 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 128/433 (29%), Positives = 230/433 (53%), Gaps = 2/433 (0%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 + +LL D + EK I RD++L + + I+KA + + I VEI+ +TG I + + Sbjct: 15 DGAKLLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEK 74 Query: 65 LLEVVEEVENYTCQISLKVARDRDPS-IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 L VV++VE+ +I L A+++ I I V + + +F R+A+ Q+I Q+++ Sbjct: 75 ELTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIK 134 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAE+D + E+ + G +++G V E ++V++ + I R I E+ G + Sbjct: 135 EAEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTFAYIPRKNLIFSEHFEVGQPIT 194 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 DV + + Q++ SRT F+ L E+PEI+ +++VKA++RDPG R+K+AV+S Sbjct: 195 FLAEDVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 254 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ +IDP+GACVG +GSR+ V EL+DEKIDI +++ +S F+IN+L P V + ++ Sbjct: 255 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 314 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +V+VP EQLSLAIG+ G + +L ++LT W ++I++ E + + Sbjct: 315 EEKEADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 374 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGIDI 422 + + + + + + + + E +E+ A E + Y Sbjct: 375 ELSALKVKLKDKIKPKAIVETNTVDITAGLPVEEFEIIEEQMAEETMILDEENYHVDDLT 434 Query: 423 TLQKKIRELGVSE 435 K+ E + E Sbjct: 435 ESTPKVLENEIQE 447 >gi|50842972|ref|YP_056199.1| transcription elongation factor NusA [Propionibacterium acnes KPA171202] gi|289426473|ref|ZP_06428216.1| transcription termination factor NusA [Propionibacterium acnes SK187] gi|289428703|ref|ZP_06430386.1| transcription termination factor NusA [Propionibacterium acnes J165] gi|295131043|ref|YP_003581706.1| transcription termination factor NusA [Propionibacterium acnes SK137] gi|50840574|gb|AAT83241.1| transcriptional termination/antitermination factor [Propionibacterium acnes KPA171202] gi|289153201|gb|EFD01919.1| transcription termination factor NusA [Propionibacterium acnes SK187] gi|289158101|gb|EFD06321.1| transcription termination factor NusA [Propionibacterium acnes J165] gi|291377248|gb|ADE01103.1| transcription termination factor NusA [Propionibacterium acnes SK137] gi|313763591|gb|EFS34955.1| transcription termination factor NusA [Propionibacterium acnes HL013PA1] gi|313773529|gb|EFS39495.1| transcription termination factor NusA [Propionibacterium acnes HL074PA1] gi|313793985|gb|EFS42009.1| transcription termination factor NusA [Propionibacterium acnes HL110PA1] gi|313801372|gb|EFS42623.1| transcription termination factor NusA [Propionibacterium acnes HL110PA2] gi|313807949|gb|EFS46430.1| transcription termination factor NusA [Propionibacterium acnes HL087PA2] gi|313811582|gb|EFS49296.1| transcription termination factor NusA [Propionibacterium acnes HL083PA1] gi|313813358|gb|EFS51072.1| transcription termination factor NusA [Propionibacterium acnes HL025PA1] gi|313816771|gb|EFS54485.1| transcription termination factor NusA [Propionibacterium acnes HL059PA1] gi|313819518|gb|EFS57232.1| transcription termination factor NusA [Propionibacterium acnes HL046PA2] gi|313822158|gb|EFS59872.1| transcription termination factor NusA [Propionibacterium acnes HL036PA1] gi|313823608|gb|EFS61322.1| transcription termination factor NusA [Propionibacterium acnes HL036PA2] gi|313825931|gb|EFS63645.1| transcription termination factor NusA [Propionibacterium acnes HL063PA1] gi|313829611|gb|EFS67325.1| transcription termination factor NusA [Propionibacterium acnes HL063PA2] gi|313831322|gb|EFS69036.1| transcription termination factor NusA [Propionibacterium acnes HL007PA1] gi|313834932|gb|EFS72646.1| transcription termination factor NusA [Propionibacterium acnes HL056PA1] gi|313839907|gb|EFS77621.1| transcription termination factor NusA [Propionibacterium acnes HL086PA1] gi|314914745|gb|EFS78576.1| transcription termination factor NusA [Propionibacterium acnes HL005PA4] gi|314919293|gb|EFS83124.1| transcription termination factor NusA [Propionibacterium acnes HL050PA1] gi|314920797|gb|EFS84628.1| transcription termination factor NusA [Propionibacterium acnes HL050PA3] gi|314924649|gb|EFS88480.1| transcription termination factor NusA [Propionibacterium acnes HL036PA3] gi|314930476|gb|EFS94307.1| transcription termination factor NusA [Propionibacterium acnes HL067PA1] gi|314954366|gb|EFS98772.1| transcription termination factor NusA [Propionibacterium acnes HL027PA1] gi|314957448|gb|EFT01551.1| transcription termination factor NusA [Propionibacterium acnes HL002PA1] gi|314962084|gb|EFT06185.1| transcription termination factor NusA [Propionibacterium acnes HL002PA2] gi|314963663|gb|EFT07763.1| transcription termination factor NusA [Propionibacterium acnes HL082PA1] gi|314968509|gb|EFT12607.1| transcription termination factor NusA [Propionibacterium acnes HL037PA1] gi|314974197|gb|EFT18293.1| transcription termination factor NusA [Propionibacterium acnes HL053PA1] gi|314976694|gb|EFT20789.1| transcription termination factor NusA [Propionibacterium acnes HL045PA1] gi|314984332|gb|EFT28424.1| transcription termination factor NusA [Propionibacterium acnes HL005PA1] gi|314986521|gb|EFT30613.1| transcription termination factor NusA [Propionibacterium acnes HL005PA2] gi|314990880|gb|EFT34971.1| transcription termination factor NusA [Propionibacterium acnes HL005PA3] gi|315079513|gb|EFT51506.1| transcription termination factor NusA [Propionibacterium acnes HL053PA2] gi|315081257|gb|EFT53233.1| transcription termination factor NusA [Propionibacterium acnes HL078PA1] gi|315083455|gb|EFT55431.1| transcription termination factor NusA [Propionibacterium acnes HL027PA2] gi|315087141|gb|EFT59117.1| transcription termination factor NusA [Propionibacterium acnes HL002PA3] gi|315095336|gb|EFT67312.1| transcription termination factor NusA [Propionibacterium acnes HL038PA1] gi|315099219|gb|EFT71195.1| transcription termination factor NusA [Propionibacterium acnes HL059PA2] gi|315100430|gb|EFT72406.1| transcription termination factor NusA [Propionibacterium acnes HL046PA1] gi|315106776|gb|EFT78752.1| transcription termination factor NusA [Propionibacterium acnes HL030PA1] gi|315109017|gb|EFT80993.1| transcription termination factor NusA [Propionibacterium acnes HL030PA2] gi|327328401|gb|EGE70163.1| transcription termination factor NusA [Propionibacterium acnes HL096PA2] gi|327329733|gb|EGE71489.1| transcription termination factor NusA [Propionibacterium acnes HL096PA3] gi|327444188|gb|EGE90842.1| transcription termination factor NusA [Propionibacterium acnes HL043PA2] gi|327444933|gb|EGE91587.1| transcription termination factor NusA [Propionibacterium acnes HL043PA1] gi|327446418|gb|EGE93072.1| transcription termination factor NusA [Propionibacterium acnes HL013PA2] gi|327451993|gb|EGE98647.1| transcription termination factor NusA [Propionibacterium acnes HL092PA1] gi|327454970|gb|EGF01625.1| transcription termination factor NusA [Propionibacterium acnes HL087PA3] gi|327457744|gb|EGF04399.1| transcription termination factor NusA [Propionibacterium acnes HL083PA2] gi|328752173|gb|EGF65789.1| transcription termination factor NusA [Propionibacterium acnes HL020PA1] gi|328755195|gb|EGF68811.1| transcription termination factor NusA [Propionibacterium acnes HL087PA1] gi|328758325|gb|EGF71941.1| transcription termination factor NusA [Propionibacterium acnes HL025PA2] gi|328760059|gb|EGF73639.1| transcription termination factor NusA [Propionibacterium acnes HL099PA1] gi|332675923|gb|AEE72739.1| transcription elongation protein NusA [Propionibacterium acnes 266] Length = 323 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322 >gi|327398877|ref|YP_004339746.1| NusA antitermination factor [Hippea maritima DSM 10411] gi|327181506|gb|AEA33687.1| NusA antitermination factor [Hippea maritima DSM 10411] Length = 360 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 132/344 (38%), Positives = 210/344 (61%), Gaps = 6/344 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+LQIA ++ E ID + V+ +A++++ A + YG +D+R+E + + +F + Sbjct: 3 EILQIAKKISEEHEIDLERVVEYLAEALKIAIQKKYGDEADVRIETDVDN---EIFDVYV 59 Query: 68 VVEEVENY--TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + VE QISL+ A+ P +G V + + GR+AV + K VI + +R+ Sbjct: 60 KKKVVEKPMLDSQISLEEAKAIKPDAKVGDYVEEKVDAKSLGRIAVTTIKNVITKLLRDI 119 Query: 126 ERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+ + Y E+K+ +G+II G V NVIVD N+ GV+ + E + G+ +K+ Sbjct: 120 EKHKAYEEYKEYIGKIIVGEVWSIGSNNNVIVDFKNAIGVLPKREQGINDKYVVGEHIKA 179 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ DV E + +++LSRTHP F+ +LF EVPE+ G V++KAV+R+P R K+AV+S Sbjct: 180 YVLDVLEEAKQVRLILSRTHPGFVKELFKKEVPEVREGSVEIKAVAREPSRRTKVAVYSK 239 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 DS IDP+G CVG +G R+ A+V EL DEKID++ WS D + ++ NA+ PA V V +DED Sbjct: 240 DSRIDPIGTCVGSKGVRIAAIVRELGDEKIDVIKWSADPSIYIRNAMSPAKVISVEIDED 299 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 + + +V V + S+AIG+ G N +LA++LTG+ IDI + Sbjct: 300 LKKAKVYVDDAEYSMAIGKGGVNAKLAAKLTGYNIDIAKISDKE 343 >gi|298694558|gb|ADI97780.1| N utilization substance protein A, putative [Staphylococcus aureus subsp. aureus ED133] Length = 340 Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 137/338 (40%), Positives = 207/338 (61%), Gaps = 1/338 (0%) Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 + G + +VVEEV + ++ L A ++P+ +IG + + + P DFGRV Q+AK Sbjct: 2 DQGTFKVIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAK 61 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISREN 175 Q ++Q++R+AER+ + EF DK +I++G + RV++ V V+LG + V+ E E Sbjct: 62 QAVMQRLRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEK 121 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 P +R+K Y+ V + +GPQ+ +SR+HP + +LF EVPEIY+G V VK+V+R+ G Sbjct: 122 YIPNERIKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGD 181 Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R+K++VFS ++ ID VGACVG +G+RV+AVV EL EKIDIV W+ D FV NAL P+ Sbjct: 182 RSKISVFSENNDIDAVGACVGAKGARVEAVVEELGGEKIDIVQWNEDPKVFVKNALSPSQ 241 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V +V++DE V+VP QLSLAIG+RGQN RLA++LTGW IDI +E + Sbjct: 242 VLEVIVDETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPV 301 Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 E + + + +++ E DV V+ Sbjct: 302 VEAEKVTEEDVALEDADTTE-STEEVTDVSVETNVEKE 338 >gi|283769341|ref|ZP_06342240.1| transcription termination factor NusA [Bulleidia extructa W1219] gi|283103998|gb|EFC05382.1| transcription termination factor NusA [Bulleidia extructa W1219] Length = 569 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 137/400 (34%), Positives = 215/400 (53%), Gaps = 2/400 (0%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLEV 68 L V E+SI + V+L + +++ KA + D+ EIN + I LF+ V Sbjct: 9 LAALTDVEEERSIPQSVILEALKEAMAKAYKKNEELPDIDVVAEINEKKKSIDLFQNYVV 68 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V EVE+ ++SL+ AR D + +G V P+ R A AK V+ QK+REAE++ Sbjct: 69 VTEVEDDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREAEKE 128 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 Y E+ ++ E++ GT++ ++ +V+LG + ++ E I E LR R+K I + Sbjct: 129 AVYNEYIGQLNEMVFGTIESIKDKFTLVNLGKTTALMLSGEQIPNERLRENQRIKVVITE 188 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V +E +G QVL+SR + +LF EVPEI+ G+V++KA++R+ G R K+AV S + Sbjct: 189 VNKEGKGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSHHPEV 248 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRI 308 DP+GAC+G RGSRVQ ++ EL+ EK+DI WS D + V NAL PA + V+ +ED G + Sbjct: 249 DPIGACIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED-GSL 307 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 VIV ++QLSLAIG+RG+N RLA +LT IDI T E + + + Sbjct: 308 MVIVAEDQLSLAIGKRGKNARLAVKLTNRKIDIKTRAELEEAGVDYEALMEKAKERKEKL 367 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + ++ + + + E + Sbjct: 368 QIEAQERARKAALEAAKLAESKRLETLEKLRAENSEELEQ 407 >gi|169334799|ref|ZP_02861992.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM 17244] gi|169257537|gb|EDS71503.1| hypothetical protein ANASTE_01205 [Anaerofustis stercorihominis DSM 17244] Length = 394 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 138/364 (37%), Positives = 216/364 (59%), Gaps = 21/364 (5%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + ++ D + K ID++ ++ + ++ A + T D+ V IN +G I F + Sbjct: 15 DFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSKQ 74 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +VEEVE+ +ISL A D S +G + + P FGR+A Q+AKQ+IIQK++E+ER Sbjct: 75 IVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESER 134 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----------------VIVDLGNSDGVIRRDETI 171 + F K E+++G ++R EY + +DLG ++G++ + Sbjct: 135 NIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGKAEGIMNSQNQV 194 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E+ PG R+K Y+ DV +GPQ++LSRTHP + +LF EV EI +GIV++K++SR Sbjct: 195 RSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSISR 254 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + GSR+K+AV+++D IDPVG C+G +G R+Q V+ E+ DEKIDI+ +S D ++ NAL Sbjct: 255 EAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKNAL 314 Query: 292 RPAIVTKVVL-----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 PA V +V + ++ V+V QLSLAIG+ GQNVRLA++LTGW IDI ++ Sbjct: 315 APADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDIKSKSS 374 Query: 347 DSIN 350 Sbjct: 375 VQEE 378 >gi|293192171|ref|ZP_06609383.1| transcription termination factor NusA [Actinomyces odontolyticus F0309] gi|292820367|gb|EFF79359.1| transcription termination factor NusA [Actinomyces odontolyticus F0309] Length = 342 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 204/363 (56%), Gaps = 26/363 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +++ D +P + P +FGR+A +A+ VI+Q++R+A Sbjct: 58 -------------MAMDEDEDGNPIGEFDDT------PKNFGRIAQSTARSVIMQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G+II+GTV+ R ++ + + V+ E + E+ R GDR++ Sbjct: 99 DDQRVFGDFAGREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV + Sbjct: 159 AYVVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+ Sbjct: 219 TREGINAKGACIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D IVP QLSLAIG+ GQN RLA++LT + IDI + E + Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNYHIDIHADTETGDDAIASRVSTPDDV 338 Query: 363 MQA 365 Sbjct: 339 TSR 341 >gi|282854640|ref|ZP_06263975.1| transcription termination factor NusA [Propionibacterium acnes J139] gi|282582222|gb|EFB87604.1| transcription termination factor NusA [Propionibacterium acnes J139] gi|314981920|gb|EFT26013.1| transcription termination factor NusA [Propionibacterium acnes HL110PA3] gi|315090735|gb|EFT62711.1| transcription termination factor NusA [Propionibacterium acnes HL110PA4] Length = 323 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSGDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322 >gi|224531576|ref|ZP_03672208.1| transcription elongation protein NusA [Borrelia valaisiana VS116] gi|224511041|gb|EEF81447.1| transcription elongation protein NusA [Borrelia valaisiana VS116] Length = 482 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 122/396 (30%), Positives = 232/396 (58%), Gaps = 7/396 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ D + + +S+ A + +G+ + V+ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLIVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 ++ K + G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SFLEVLEKDISKEN--FVEDGYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGVIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAKMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ E F ++ +++ +K+ + + I +E +I Sbjct: 365 DVVEEEQFEEISKISDLKLLDPSVISNLSKEGLNDI 400 >gi|228473549|ref|ZP_04058301.1| transcription termination factor NusA [Capnocytophaga gingivalis ATCC 33624] gi|228274921|gb|EEK13731.1| transcription termination factor NusA [Capnocytophaga gingivalis ATCC 33624] Length = 411 Score = 272 bits (696), Expect = 9e-71, Method: Composition-based stats. Identities = 128/418 (30%), Positives = 230/418 (55%), Gaps = 12/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + + Y +FK+ +G I + + ++ VI+ D ++ ++ RD+ I + + G+ Sbjct: 123 HEYDNNTVYKKFKELIGTIYTAEIHHIKGKTVILLDDEGNEILLPRDKQIPSDFFKKGET 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+AV Sbjct: 183 TKGIIESVDFKGNKPSIILSRTSPVFLERLFEQEIPEIADGLITIQKVARIPGEKAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + D IDPVGACVG+ G+R++++V EL +E ID++ +S ++ F+ AL PA +T + + Sbjct: 243 DTYDDRIDPVGACVGVNGARIRSIVRELGNENIDVISYSSNTNLFISKALAPAKITSITV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E + +F + Sbjct: 303 NEETKRAEVLLASEEVSKAIGKGGSNIRLASLLTGYEIDVFREGAEEDVELSEFED---- 358 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 +++ + G + + E+ + ET E+ RE E Sbjct: 359 -----DIEPWVIEEFRRIGLDTAKSVLEYSAEELEKRIDLERETIEEVLRVLREEFEN 411 >gi|317508529|ref|ZP_07966195.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] gi|316253173|gb|EFV12577.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] Length = 342 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 135/356 (37%), Positives = 203/356 (57%), Gaps = 31/356 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q A+ EK + + ++ +A ++ A + G +D RV+I+ + G + + V E Sbjct: 6 QTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHHADARVDIDRKHGAVKV----LVAE 61 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ +G P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 62 RDEDGNI---------------LGEY---DDTPADFGRIATMTARQVILQRLRDAEGDQG 103 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRV 182 + + K GEI++G V+R N IV LG+ +GV+ E + E+L GDRV Sbjct: 104 FADLPVKEGEIVAGVVQRDARANERGLQIVKLGSELKSYEGVLPVAEQVPGESLVHGDRV 163 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI G VQ+ AV+R+ G R+K+AV Sbjct: 164 KCYVVSVKAGRRGPQITLSRTHPNLVRKLFALEVPEIGEGSVQIVAVAREAGHRSKIAVK 223 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA + Sbjct: 224 STVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALATRVL 283 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 D + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ + Sbjct: 284 DPVAKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARRAAADH 339 >gi|323342029|ref|ZP_08082262.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464454|gb|EFY09647.1| transcription elongation factor NusA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 536 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 248/492 (50%), Gaps = 8/492 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 ++ + ++I +++++ + DS+ KA R G + + V I+ T ++ LF Sbjct: 6 VILAMQEIEDNRNISKEIIIDALQDSLIKAYRKQIGVPDALVDVIIDERTQEMKLFHKFL 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + ++ + + + +G P ++ GR A AK VI QK+REAE+ Sbjct: 66 VVEEVMDDELEVGITELPEGAEGLQVGEYYMIEEPIVELGRAAATLAKNVIKQKIREAEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D++GE+I V+ VE V+++LG S V+ R I E R G +K I Sbjct: 126 QAVYDEYIDQLGEMIMAMVESVEEKFVVLNLGKSLAVMPRAAQIEGETYREGQTLKVVIT 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV R+ +G Q+L+SR + +LF EVPEI+ G V++KA++R+ G R K+AV+S DS Sbjct: 186 DVNRDTKGAQILVSRADAMLVRRLFENEVPEIFEGQVEIKAIAREAGERTKIAVYSHDSD 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+GAC+G RGSRVQA++ EL+ EKIDI WS + + NAL PA V V + D Sbjct: 246 IDPIGACIGPRGSRVQAIIEELKGEKIDIFEWSDNMVELINNALAPAEVIAVYPNADNKG 305 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI--ITEEEDSINRQKDFNERTQFFMQA 365 + VIV QLSLAIG+RG+N RLA +LT IDI ++E E + +++ Sbjct: 306 LVVIVDDNQLSLAIGKRGKNARLAVRLTKQRIDIKSVSEAEADGIDYVSLMAAYEAEIRS 365 Query: 366 INVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ 425 V E + LV E A V EI +E + A I +E + + Sbjct: 366 KQVQEEVNEELV----VRTEVEATVDAEEIVEVEE-TADLAESIIEEVQEVEQTEVTDVV 420 Query: 426 KKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + + +EE +D K + + E LA S + + + D Sbjct: 421 SEEIIIEETEESEEAIKLDRKDVFKPRTDYVSKFEQLADASRKEEQDLRRRRRKPEREED 480 Query: 486 GFLSSLGTPKDQ 497 +++ K++ Sbjct: 481 KPVNTSELLKEK 492 >gi|295098916|emb|CBK88005.1| transcription termination factor NusA [Eubacterium cylindroides T2-87] Length = 545 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 144/448 (32%), Positives = 240/448 (53%), Gaps = 23/448 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 L + + ++ + ++V + +++ KA R + + V I E G I ++ + Sbjct: 8 LQKALQGIENDRQLSSEIVEDALREALTKAYRKHIEIPDAYVEVVI--EDGIIHIYHQRK 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVE+VE+ +ISL+ AR + +I + V++ + F R AV AK V+ QK+REAE+ Sbjct: 66 VVEDVEDDELEISLEDARKVNKNIQLDDFVNEEVDFTTFDRAAVVLAKNVMKQKIREAEK 125 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ DK+ E++ G V+ VE VIV++G + ++++ + I E G ++ I Sbjct: 126 AQVYEEYCDKLDEMVLGVVETVEEKFVIVNIGKTLAMLKKSQQIPTEKYYEGQKLLVVIT 185 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++RDPG R K+AV+S + + Sbjct: 186 EVNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIARDPGERCKIAVYSHNEN 245 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E+V Sbjct: 246 IDPIGACIGPRGSRVQTIINELNGEKIDIFEWSDNISELIENALSPSEAVAVIPNENVKD 305 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE--------- 357 + V+VP QLSLAIG+RG+N RLA +L+ IDI +E E Sbjct: 306 GLIVVVPDSQLSLAIGKRGKNARLAVKLSNRKIDIKSESEMQELGIDYMTIAKELQEEYE 365 Query: 358 ---------RTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS-IEGFDEETAV 407 + Q ++ + EI + F +++ E+ I Sbjct: 366 AKKAKERAYKQQQKIEELKHSEIEIENVDVADFDYDDDIDTTTYEEVEGPIHQNTTTLFE 425 Query: 408 EIQGRAREYLEGIDITLQKKIRELGVSE 435 + + + +E ++K +E ++ Sbjct: 426 KERETELDEMEEAARIAKEKRKEKTAAD 453 >gi|327334250|gb|EGE75964.1| transcription termination factor NusA [Propionibacterium acnes HL097PA1] Length = 323 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 129/340 (37%), Positives = 197/340 (57%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSL IGR GQN RLA++LTGW IDI + + Sbjct: 283 TARAIVPDYQLSLGIGREGQNARLAARLTGWRIDIRPDNK 322 >gi|300774925|ref|ZP_07084788.1| transcription termination factor NusA [Chryseobacterium gleum ATCC 35910] gi|300506740|gb|EFK37875.1| transcription termination factor NusA [Chryseobacterium gleum ATCC 35910] Length = 411 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 121/419 (28%), Positives = 226/419 (53%), Gaps = 11/419 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + + L++ EK I + +++++ DS++ R + + V +NP+ GD +F Sbjct: 1 MDNIALIESFGDFKDEKGISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIF 60 Query: 64 RLLEVVEEV--ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE+ E+ +I + A+ DP+ ++G + +P GR + + KQ++ K Sbjct: 61 LNKTIVEDEMSEDDDLEIEISEAKKIDPTFEVGEDFTMEIPVAQLGRRNILTLKQILATK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 ++E Y +F+DK+GEI+ G + + + +VI +D ++ ++ ++ I + + G+ Sbjct: 121 LQEHNNAMLYEQFRDKIGEIVVGEIHHIRHKHVILLDDEGNEFILPKENQIPSDFFKKGE 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +++ + V + PQ+++SRT P+F+ KL +E+PEI +G + +K V R PG +AK+A Sbjct: 181 NIRAIVETVDFKGSKPQIIISRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+ Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKIE 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ V P E++S IG++GQN+RLAS LTG+ ID+ E + + + Sbjct: 301 INEETNYALVYTPVEEISKVIGKQGQNIRLASWLTGYEIDVYRESSEDDDVELKEFND-- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++++ I G + + + + ++ +EET E++ RE E Sbjct: 359 ------DIEQWILDEFKKVGLTTAKSVLDKETESLLNMVDLEEETIEEVKRILREEFED 411 >gi|119953577|ref|YP_945787.1| transcription elongation factor NusA [Borrelia turicatae 91E135] gi|119862348|gb|AAX18116.1| N utilization substance protein A [Borrelia turicatae 91E135] Length = 495 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 136/424 (32%), Positives = 243/424 (57%), Gaps = 15/424 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +SI A + +GT + ++ + +TGD+ ++ ++VE Sbjct: 21 QMIANIANERGMSIDAIRKTVRESIMIAYKKYFGTSENALIKFDEDTGDLIVYSKKKIVE 80 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV++ +I +++ + G + P F R+++Q AKQ ++ E + Sbjct: 81 EVQDDILEILKDDSQEF--EVMEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDNEL 138 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 139 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYGLNDKVRVLVYSVK 198 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI G++++ + RDPG R K+AV+S IDP Sbjct: 199 KGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGLIKIHKIVRDPGYRTKVAVYSEKEEIDP 258 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + V + DED+ + Sbjct: 259 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIRDALTPAKIDNVYIVDEDLHKAL 318 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V EQLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D Sbjct: 319 VVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKASGEFKQETFEM----FD 374 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 +II + + F ++ +++ +KI D + ++ + ++ ++K+ Sbjct: 375 KIIQDNVQEDEFEEINKISELKI--------LDNDIVDKLVEAGFDDIDSFLDASEEKLF 426 Query: 430 ELGV 433 ELG+ Sbjct: 427 ELGI 430 >gi|314978822|gb|EFT22916.1| transcription termination factor NusA [Propionibacterium acnes HL072PA2] gi|315089313|gb|EFT61289.1| transcription termination factor NusA [Propionibacterium acnes HL072PA1] Length = 323 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 197/340 (57%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA+ R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALVREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322 >gi|261338246|ref|ZP_05966130.1| transcription termination factor NusA [Bifidobacterium gallicum DSM 20093] gi|270276899|gb|EFA22753.1| transcription termination factor NusA [Bifidobacterium gallicum DSM 20093] Length = 381 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 120/334 (35%), Positives = 191/334 (57%), Gaps = 19/334 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VE- 70 +A E+ ID + V ++++++ A +RVE++ G +++ E+ VE Sbjct: 8 IHQLAKEQGIDTETVDEALSEALRLAYLKTPNAAKHVRVELDERAGTFTIWARDEIRVEP 67 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ I ++G D P DFGR+A +A+QVI Q R AE DR Sbjct: 68 TEEDPHGHI------------ELGEEYDD--TPKDFGRLAAATARQVITQLFRRAEDDRI 113 Query: 131 YLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 + F + G++++G +++ + NV V +G+ + ++ R E + E R GDR++ Y+ + Sbjct: 114 FGAFSGQKGKLMTGVIQQDVKDPTNVHVAVGDVEAILPRREQVPGERYRHGDRIRVYVVN 173 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R RGP++++SR+HP + KLF EVPE+ +G V + A++R+ G+R K+AV ++ + Sbjct: 174 VNRGLRGPEIIVSRSHPDLVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGV 233 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED-VGR 307 +P GA +G GSRV+AV+ L +EKIDIV WS D A F+ AL PA V + D Sbjct: 234 NPKGALIGPGGSRVRAVMENLGNEKIDIVDWSDDPAKFIGAALSPANAAGVDVISDKNNT 293 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 294 AVAYIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|184201252|ref|YP_001855459.1| transcription elongation protein NusA [Kocuria rhizophila DC2201] gi|183581482|dbj|BAG29953.1| transcription elongation protein NusA [Kocuria rhizophila DC2201] Length = 325 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 121/344 (35%), Positives = 193/344 (56%), Gaps = 26/344 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I DV++ + ++ A G + R E+ TG ++++ Sbjct: 5 MSTLRLLERERDIPVDVLIPTIEQALLLAYMRSPGAIDGARAEVERRTGHVTIW------ 58 Query: 70 EEVENYTCQISLKVARDRDP-SIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A + D IG P FGR+A +A+QVI+QK+R+ E D Sbjct: 59 --------------APELDEQDQRIGEF---DDTPSGFGRIAAATARQVILQKLRDVEDD 101 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 FK + GE++SG +++ ++ V+LG +G++ E + E R GDR+++++ Sbjct: 102 NVLGHFKGREGELVSGQIQQGNNPRMVQVNLGTVEGLLPPHEQVPGETYRHGDRIRAFVV 161 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 + +R +GP + LSR+HP + +LF MEVPEI +G V++ ++R+ G R K+AV + Sbjct: 162 EAKRGFKGPSITLSRSHPDLVRRLFEMEVPEIADGSVEIVTLAREAGHRTKMAVEARRPG 221 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 + GAC+G GSRV+AV+ EL +EKIDI+ +S D A F+ NAL PA V++VV+ D+ Sbjct: 222 ANAKGACIGDMGSRVRAVMNELGEEKIDIIDFSQDPAEFIGNALSPARVSRVVVLDDAAR 281 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 +VP QLSLAIG+ GQN RLA++LTGW IDI+ E + Sbjct: 282 SARAVVPDSQLSLAIGKEGQNARLAARLTGWKIDIVPESRATDR 325 >gi|183601974|ref|ZP_02963343.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis HN019] gi|219682886|ref|YP_002469269.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis AD011] gi|241190463|ref|YP_002967857.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195869|ref|YP_002969424.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218859|gb|EDT89501.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis HN019] gi|219620536|gb|ACL28693.1| N utilization substance-like protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248855|gb|ACS45795.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250423|gb|ACS47362.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178187|gb|ADC85433.1| N utilization substance protein A [Bifidobacterium animalis subsp. lactis BB-12] gi|295793450|gb|ADG32985.1| transcription elongation factor NusA [Bifidobacterium animalis subsp. lactis V9] Length = 358 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 120/332 (36%), Positives = 196/332 (59%), Gaps = 15/332 (4%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 A+A E+ ID + V + ++++++ A + RVE++P G +++ E+ +E Sbjct: 8 IHALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWARDEIPQEP 67 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 P+ ++G D P DFGR+A +A+QVI Q R+AE DR + Sbjct: 68 TEDNPH----------PAPELGEEYDD--TPHDFGRLAASTARQVIQQLFRKAEDDRVFG 115 Query: 133 EFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 F + G++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ V Sbjct: 116 AFSGQRGKLITGVVQQDVKDPANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVTTVA 175 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R +GP++++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ I+P Sbjct: 176 RGLKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPGINP 235 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309 GA +G GSRV+AV+ L EKIDI+ WS + A F+ AL PA+V+ V + E Sbjct: 236 KGALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQTAI 295 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + EQLSLAIG+ GQN RLA++LTGW I I Sbjct: 296 AFINDEQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|298345265|ref|YP_003717952.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] gi|298235326|gb|ADI66458.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063] Length = 328 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 189/341 (55%), Gaps = 25/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68 + V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VNELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323 >gi|24213642|ref|NP_711123.1| transcription elongation factor NusA [Leptospira interrogans serovar Lai str. 56601] gi|45658541|ref|YP_002627.1| transcription elongation factor NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194444|gb|AAN48141.1| transcription elongation factor NusA [Leptospira interrogans serovar Lai str. 56601] gi|45601784|gb|AAS71264.1| NusA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 460 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 145/466 (31%), Positives = 230/466 (49%), Gaps = 31/466 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIR------VEINPETGD--I 60 LL+ +KS+DR+ V+ V+ DS+ A + G V + +G + Sbjct: 12 LLEAIQQFCADKSLDREAVMGVIRDSLITAYKKKSGLEESSELEKPSPVTVEFASGKDSV 71 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + +VV + +ISL+ A+ D S +IG V+S P++ R+ AKQ++ Q Sbjct: 72 VIAIAKKVVSGNPSSALEISLEDAKAIDASAEIGSVISFREKPVELSRIISSQAKQMVFQ 131 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++++ E++ + E+K K GE+ G +R + + +DLG +G++ R E E GD Sbjct: 132 RLKDMEKELLFNEYKAKEGELTHGYFQRWKKDAMSIDLGKVEGIMPRREQNPGEKYHSGD 191 Query: 181 RVKSYIYDVRREQRGPQ--VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+K+ I V R P + LSR F+ KLF ME+PEIY+G+V++ V+R P R K Sbjct: 192 RLKAIIQRVELRPREPIPVITLSRASADFVRKLFEMEIPEIYDGLVEIINVARQPSIRTK 251 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 + V ++ IDPVGACVGM+G R+Q++V EL +E+IDIV S D++ F+ NA+ PA + Sbjct: 252 VVVRATRGDIDPVGACVGMKGVRIQSIVRELGNERIDIVESSDDASEFIANAISPAKPVE 311 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 V +D V+VP +QLSLAIG G NV+LASQL G+ IDI T + + Sbjct: 312 VKVDGSGREAMVVVPDDQLSLAIGINGSNVKLASQLAGYKIDIKTVTQYNAELASPEAR- 370 Query: 359 TQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE 418 L F E V + + E E + R L+ Sbjct: 371 ------------ERLERL----FYSPVEETKVSMEQEEEEELTPLEDLPGLSARIVGILK 414 Query: 419 GIDITLQKKIRELGVSEELCSIPGI---DSKIKVALGENGIKTMED 461 I + + E ++L + GI + + L ++ +ED Sbjct: 415 SEGIKDLETLIEYS-QDDLAKLQGIGHTTAGQILKLLRESVEWVED 459 >gi|315655685|ref|ZP_07908583.1| transcription termination factor NusA [Mobiluncus curtisii ATCC 51333] gi|315489749|gb|EFU79376.1| transcription termination factor NusA [Mobiluncus curtisii ATCC 51333] Length = 328 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 190/341 (55%), Gaps = 25/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68 + V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323 >gi|154509097|ref|ZP_02044739.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC 17982] gi|153798731|gb|EDN81151.1| hypothetical protein ACTODO_01614 [Actinomyces odontolyticus ATCC 17982] Length = 342 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 204/363 (56%), Gaps = 26/363 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +++ D +P + P +FGR+A +A+ VI+Q++R+A Sbjct: 58 -------------MAMDEDEDGNPIGEFDDT------PKNFGRIAQSTARSVIMQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G+II+GTV+ R ++ + + V+ E + E+ R GDR++ Sbjct: 99 DDQRVFGDFAGREGQIITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKVPGESYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +Y+ V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV + Sbjct: 159 AYVVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVAA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV++V+ +L EKIDIV +S D A FV N+L PA VT+VV+ Sbjct: 219 TREGINAKGACIGPMGARVRSVMADLGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D IVP QLSLAIG+ GQN RLA++LT + IDI + E + Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNYHIDIHADTETGDDAIASRVSTPDDV 338 Query: 363 MQA 365 Sbjct: 339 TSR 341 >gi|314923905|gb|EFS87736.1| transcription termination factor NusA [Propionibacterium acnes HL001PA1] gi|314966035|gb|EFT10134.1| transcription termination factor NusA [Propionibacterium acnes HL082PA2] gi|315094983|gb|EFT66959.1| transcription termination factor NusA [Propionibacterium acnes HL060PA1] gi|315104208|gb|EFT76184.1| transcription termination factor NusA [Propionibacterium acnes HL050PA2] gi|327328082|gb|EGE69851.1| transcription termination factor NusA [Propionibacterium acnes HL103PA1] Length = 323 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 130/340 (38%), Positives = 198/340 (58%), Gaps = 25/340 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A ++ +V+++ +TG++++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVNGAKVQLDRKTGNVAVML----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++D + G P DFGRVA +A+QVI Q++REAE ++ Sbjct: 60 ---------------PEKDEEGQVVGWYD--GTPEDFGRVAASTARQVIFQRLREAEDEQ 102 Query: 130 QYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +Y F G++I+G V++ + V VDLG+ +G++ E + E G R++ Y+ Sbjct: 103 KYGHFSAVEGDVITGVVQQSYRDTRTVRVDLGSLEGIMPPAEQVPGEKYSHGRRIRVYVV 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 VR+E RGPQV++SRTHP + KLF MEVPEI G+V++KA++R+ G R+K+AV S + Sbjct: 163 AVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQGVVEIKALAREAGHRSKIAVVSHNPD 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D Sbjct: 223 VSAKGACIGPMGQRVRAVMHELDEEKIDIIDWSGDPAEFVGAALSPSKVSSVTVIDSKAK 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 283 TARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNK 322 >gi|304390822|ref|ZP_07372774.1| transcription termination factor NusA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325705|gb|EFL92951.1| transcription termination factor NusA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 328 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 191/341 (56%), Gaps = 25/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68 + V EK +D + +++ + ++ KA R+ G + RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLINTVEQALLKAYRNQPGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323 >gi|326335427|ref|ZP_08201614.1| N utilization substance protein A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692193|gb|EGD34145.1| N utilization substance protein A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 411 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 127/418 (30%), Positives = 229/418 (54%), Gaps = 12/418 (2%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N L+L++ +K IDR+ ++S++ + + A + YG+ + + INP+ GDI ++R Sbjct: 3 NNLDLIESFSEFRDDKLIDREALMSILDEVFKTALKKKYGSDENFDIIINPDKGDIEIWR 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V++ VEN +I L A + ++G VS+ + GR A+ + +Q +I KV Sbjct: 63 NRIIVDDGMVENPNAEIPLSEALKIESDFEVGEEVSEEVKISQLGRRAILALRQNLISKV 122 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDR 181 E + + Y +FK+ +G I + + ++ VI+ D ++ ++ RD I + + G+ Sbjct: 123 HEYDNNTIYKKFKELIGGIYTAEIHHIKGKTVILLDDDGNEILLPRDRQIPSDFFKKGET 182 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K I V + P ++LSRT P F+ +LF E+PEI +G++ ++ V+R PG +AK+AV Sbjct: 183 IKGIIESVDFKGNKPAIILSRTSPLFLERLFEQEIPEIADGLITIQKVARIPGEKAKIAV 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S D IDPVGACVG+ G+R++++V EL +E ID++ +S + + F+ AL PA +T + + Sbjct: 243 DSYDDRIDPVGACVGVNGARIRSIVRELGNENIDVINFSNNISLFISKALAPAKITSITV 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 +E+ R EV++ E++S AIG+ G N+RLAS LTG+ ID+ E + +F + + Sbjct: 303 NEETKRAEVLLASEEVSKAIGKGGSNIRLASMLTGYEIDVFREGAEEDIELSEFEDEIEP 362 Query: 362 FMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 ++ G + + E+ + ET ++ +E E Sbjct: 363 WI---------IEEFRRIGLDTAKSVLEYSAEELEKRVDLELETIQDVLRILKEEFEN 411 >gi|149197530|ref|ZP_01874581.1| transcription elongation factor NusA [Lentisphaera araneosa HTCC2155] gi|149139548|gb|EDM27950.1| transcription elongation factor NusA [Lentisphaera araneosa HTCC2155] Length = 413 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 137/411 (33%), Positives = 232/411 (56%), Gaps = 5/411 (1%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL+ + + + EK+ID+ ++ ++ D++ G S+I+VEIN TGD+++ Sbjct: 2 NSELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIAD 61 Query: 66 LEVVEEVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + + EEV + +I L A+ + IG V L R+A Q+ +Q I+Q++R Sbjct: 62 VVIAEEVFDKRHEIDLASAQKEYGDEVAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRLRT 121 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++R E+ D VGE+ISGTV+ E +IVD G + G + + + + RE GD + + Sbjct: 122 FEKERVVEEYSDMVGELISGTVRHFEKNELIVDFGRAQGGLGKMDRVPRERFDNGDHITA 181 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + ++ + GP ++LSRT + + KLF EV EI NG+V++KAV+R G R K+AV S Sbjct: 182 LLKEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAVAS- 240 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 S+DPVGAC+G+RGSRV+ + EL +EK+DI+ +S D +V A +P + +V +D+D Sbjct: 241 -DSLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEIDQD 299 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED-SINRQKDFNERTQFFM 363 I+++V +E +GR G+N+RL +L W I++ D I + E Q M Sbjct: 300 GRLIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQTMM 359 Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + N+DE A +++ G+ +E ++ ++ G + + A EI A+ Sbjct: 360 KLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVE-AGIEADHATEIIEYAK 409 >gi|311113215|ref|YP_003984437.1| transcription termination factor NusA [Rothia dentocariosa ATCC 17931] gi|310944709|gb|ADP41003.1| transcription termination factor NusA [Rothia dentocariosa ATCC 17931] Length = 349 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 209/369 (56%), Gaps = 25/369 (6%) Query: 5 NRLEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N + + L + A+A ++ + + + S++ +++ A G + R I+ TGD ++ Sbjct: 3 NNMTIDLGVLHALAKQRGLVLEELFSLVENALVLAYMKQPGAIKGSRAVIDRTTGDFAIL 62 Query: 64 RLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 A + D D P +FGR+A + +QV+ Q++R Sbjct: 63 --------------------APELDDDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLR 100 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRV 182 +AE EFKD+ G + SG +++ ++ VDLG + V+ +E + E G R+ Sbjct: 101 DAEDASVLGEFKDREGTLASGVIQQGNNPRMVQVDLGTIEAVLPANEQVPGEQYPHGTRI 160 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ + RR Q+GP ++LSR+HP +++LF EVPEI +G V++ +++R+ G R+K+AV Sbjct: 161 RAYLLEARRGQKGPSIVLSRSHPNLVLRLFEHEVPEIADGSVKINSIAREAGHRSKIAVS 220 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 +++ SI+ GAC+G G+RV+AV EL DEKIDIV +S D A F+ AL PA VT+V++ Sbjct: 221 ATNPSINAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPAEFITAALSPAKVTEVIIA 280 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 D IVP EQLSLAIGR GQN RLA++LTGW IDI+ E + + R ++ Sbjct: 281 DPREYSARAIVPDEQLSLAIGREGQNARLAAKLTGWRIDILAESKYAQIRAEEEVAERVA 340 Query: 362 FMQAINVDE 370 ++ +E Sbjct: 341 RSLDLDENE 349 >gi|313206787|ref|YP_004045964.1| nusa antitermination factor [Riemerella anatipestifer DSM 15868] gi|312446103|gb|ADQ82458.1| NusA antitermination factor [Riemerella anatipestifer DSM 15868] gi|315023860|gb|EFT36862.1| transcription elongation factor NusA [Riemerella anatipestifer RA-YM] gi|325335773|gb|ADZ12047.1| Transcription elongation factor [Riemerella anatipestifer RA-GD] Length = 411 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 118/410 (28%), Positives = 219/410 (53%), Gaps = 11/410 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L L++ EK+I + +++++ DS++ R Y + V +NP+ GD +F Sbjct: 1 MDNLALIEAFGDFKEEKNISKIDLMAIIEDSLKTLLRKRYDSDDHFDVIVNPDKGDFQIF 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 +VE+ E+ +I + AR DP+ ++G + + GR + + KQ++ K Sbjct: 61 LNKTIVEDQMSEDDDLEIEISEARKTDPTFEVGEEFTQEIKVSQLGRRNILTLKQILATK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 ++E Y +FKD++GEI+ G V + + +VI+ D ++ ++ +D+ I + R GD Sbjct: 121 IQEHHNAYLYEQFKDRIGEIMVGEVHHIRFKHVILLDDEGNEYILPKDKQIPSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ I V + PQ+ +SR P+F+ +L +E+PEI +G + +K V R PG +AK+A Sbjct: 181 NVRAVIESVDFKGSKPQITISRISPKFLERLLELEIPEIQDGTIILKKVVRIPGEKAKIA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + D IDPVGACVG++GSR+ VV ELR+E ID++ WS + V AL + K+ Sbjct: 241 VDAYDDRIDPVGACVGVKGSRIHGVVRELRNENIDVIQWSKNPEILVKRALGNVTINKID 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++ + + V P E+++ IG++GQN++LAS L+ + ID+ E + + + Sbjct: 301 INAEESKALVYTPSEEIAKIIGKQGQNIKLASWLSDYEIDVYREAHED--------DDVE 352 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQ 410 + +++ + G + + + + +EET E++ Sbjct: 353 LDEFSDEIEDWVIETFKKVGLDTAKSIIDKDTEALVRLTDLEEETIEEVK 402 >gi|239621506|ref|ZP_04664537.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454835|ref|YP_003661979.1| NusA antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|239515381|gb|EEQ55248.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184267|gb|ADH01149.1| NusA antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 355 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 194/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPY-----------PAPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|186685820|ref|YP_001869016.1| transcription elongation factor NusA [Nostoc punctiforme PCC 73102] gi|186468272|gb|ACC84073.1| NusA antitermination factor [Nostoc punctiforme PCC 73102] Length = 425 Score = 269 bits (689), Expect = 6e-70, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 29/370 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L ++ ++++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKELIESISRERNLPRLAVQSAIREALLKGYERYRRAQNLERKQFDEDYFENFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P +G V + P +FGR+A Sbjct: 69 GEGFRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +V++ + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSI 349 DI + + Sbjct: 369 DIKDKAKYDY 378 >gi|281414299|ref|ZP_06246041.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] gi|289705159|ref|ZP_06501562.1| transcription termination factor NusA [Micrococcus luteus SK58] gi|289558103|gb|EFD51391.1| transcription termination factor NusA [Micrococcus luteus SK58] Length = 328 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 121/337 (35%), Positives = 187/337 (55%), Gaps = 24/337 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D ++ + ++ A G + RVEI+ TG ++++ Sbjct: 5 MSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTVWAT---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E++ I P FGRVA +A+QV+IQ++RE + D+ Sbjct: 61 -ELDEDDTPIG-----------------EFDDTPNGFGRVAASTARQVMIQRMREEDDDK 102 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKDK GE++SG +++ V V+LG + V+ E + E+ G R+++Y+ Sbjct: 103 VLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + Sbjct: 163 ATRGAKGPSVTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GA +G GSRV+AV+TEL DEKIDI+ D A + NAL PA V + D D Sbjct: 223 NAKGASIGEMGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VP+ QLSLAIG+ GQN RLA++LTGW IDI+ + Sbjct: 283 ARAVVPQYQLSLAIGKEGQNARLAAKLTGWRIDIVGD 319 >gi|148273335|ref|YP_001222896.1| transcription elongation factor NusA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831265|emb|CAN02221.1| putative transcriptional termination/antitermination factor [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 335 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 122/353 (34%), Positives = 188/353 (53%), Gaps = 33/353 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDI 60 L + + E+ I + ++S++ +I A RV ++ +TG + Sbjct: 5 LSVLRLMEREREIPFEELVSIIEQAILTAYLKHTDQADAKPVADGVPPARVHLDRKTGHV 64 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ V E++ I P DFGR+A +AKQVI Q Sbjct: 65 SVH-----VPELDEDGLVIG-----------------ESEDSPSDFGRIAAFAAKQVINQ 102 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179 ++R+ DR EFK + G+I++G V++ +I VDLG + ++ +E + E G Sbjct: 103 RLRDIGDDRILGEFKGREGDIVAGVVQQGPNPRMIHVDLGTIEAILPPEEQVPGEKYVHG 162 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI G+V++ +++R+ G R K+ Sbjct: 163 SRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIAQGLVEIVSLAREAGHRTKI 222 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTK 298 AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S FV NAL PA + Sbjct: 223 AVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSESLPVFVGNALSPARVTSS 282 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+D+ + +VP QLSLAIG+ GQN RLA++LTG IDI + + Sbjct: 283 FVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILEGDD 335 >gi|300743965|ref|ZP_07072985.1| transcription termination factor NusA [Rothia dentocariosa M567] gi|300380326|gb|EFJ76889.1| transcription termination factor NusA [Rothia dentocariosa M567] Length = 345 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 24/363 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + A+A ++ + + + S++ +++ A G + R I+ TGD ++ Sbjct: 5 LGVLHALAKQRGLVLEELFSLVENALVLAYMKQPGAIKGSRAVIDRTTGDFAIL------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 59 --------------APELDDDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G + SG +++ ++ VDLG + V+ +E + E G R+++Y+ + Sbjct: 103 VLGEFKDREGTLASGVIQQGNNPRMVQVDLGTIEAVLPANEQVPGEQYPHGTRIRAYLLE 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR Q+GP ++LSR+HP +++LF EVPEI +G V++ +++R+ G R+K+AV +++ SI Sbjct: 163 ARRGQKGPSIVLSRSHPNLVLRLFEHEVPEIADGSVKINSIAREAGHRSKIAVSATNPSI 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D A F+ AL PA VT+V++ D Sbjct: 223 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPAEFITAALSPAKVTEVIIADPREYS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 IVP EQLSLAIGR GQN RLA++LTGW IDI+ E + + R ++ ++ Sbjct: 283 ARAIVPDEQLSLAIGREGQNARLAAKLTGWRIDILAESKYAQIRAEEEVAERVARSLDLD 342 Query: 368 VDE 370 +E Sbjct: 343 ENE 345 >gi|262340805|ref|YP_003283660.1| transcription elongation factor NusA [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272142|gb|ACY40050.1| transcription elongation factor NusA [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 417 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 124/416 (29%), Positives = 229/416 (55%), Gaps = 14/416 (3%) Query: 11 QIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 + D+ + EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++R Sbjct: 5 ALIDSFSDFKCEKNIDRVSLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRNRI 64 Query: 68 VVEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV++ E + +I L +AR +P +IG V++ + GR A+ S +Q ++ K+ E Sbjct: 65 VVQDGEVKDINKEIELSIARKIEPDFEIGEEVTEKVELQSLGRRAILSLRQNLLSKINEY 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKS 184 + Y +FK+K+GEII+ V + +I+ D ++ V+ + E I + R GD V++ Sbjct: 125 DNTNTYKKFKNKIGEIINVEVYHILSKQIIMRDEEQNEMVLPKQEQIPSDFFRKGDPVRA 184 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V + P +L+R F+ +LF +E+PE+ +G++ VK V+R PG +AK+AV S Sbjct: 185 LVKRVDWKDNKPFAILTRRDEAFLEELFKLEIPEVSDGLITVKKVARIPGEKAKVAVESY 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVGM+GSR+ +V EL++E ID++ ++ ++ ++ AL PA V+ + ++ED Sbjct: 245 DDRIDPVGACVGMKGSRIHPIVRELKNENIDVINYTSNTQLYITRALSPAKVSMMEVNED 304 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 + V V E++S AIGR GQN+RLASQLTG+ I I + + + Sbjct: 305 HKYVNVYVKLEEISRAIGRGGQNIRLASQLTGYKIHIFRDFPYEDDVELTEFSD------ 358 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 ++ + G + + + ++++ +E+ ++ ++ E Sbjct: 359 --EIEPEVLERFHKVGLNTAKSILNYRKNDLSKRTNLEEKIINKVVSILKKEFEEE 412 >gi|315656401|ref|ZP_07909290.1| transcription termination factor NusA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492960|gb|EFU82562.1| transcription termination factor NusA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 328 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 190/341 (55%), Gaps = 25/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-IRVEINPETGDISLFRLLEV 68 + V EK +D + ++ + ++ KA R+ G + RVE++ +TG++ + Sbjct: 5 MSALRLVEAEKGMDMNSLIDTVEQALLKAYRNQSGAEKEHSRVEVDRKTGEVRVL----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 V+E++ ++ + P DFGR A + K VIIQ+ +E E Sbjct: 60 VKELDEDGTELG-----------------ESEITPKDFGRTAAATVKSVIIQRFQEEEDK 102 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 +FKD+VG+++SG V + V V+LG+ +G+I E + E + G R+ Y+ Sbjct: 103 AVLGDFKDRVGQVVSGVVTAGRDPKLVTVNLGDVEGIIPPAEQVPGEKYQHGVRLSVYVL 162 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 R +GP + LSRTHP + LF EVPEI V +++V+R+PG R K+AV ++ Sbjct: 163 AASRGFKGPHIELSRTHPGLVQGLFKREVPEIDREEVVIESVAREPGHRTKIAVRPTEKG 222 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVG 306 I+ GAC+G GSRV+AV+ EL EKIDIV W+ D +V NAL PA V V +DE Sbjct: 223 INAKGACIGPNGSRVRAVMNELNGEKIDIVDWAEDPTVYVANALSPAKVISVRVIDEAKR 282 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+VP Q SLAIG+ GQN RLAS+LTGW IDI ++ E+ Sbjct: 283 LARVVVPDFQQSLAIGKEGQNARLASRLTGWGIDIHSDTEN 323 >gi|295395322|ref|ZP_06805525.1| transcription termination factor NusA [Brevibacterium mcbrellneri ATCC 49030] gi|294971825|gb|EFG47697.1| transcription termination factor NusA [Brevibacterium mcbrellneri ATCC 49030] Length = 320 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 120/338 (35%), Positives = 192/338 (56%), Gaps = 24/338 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + E+ I V++ ++ ++ A + G D R E++ +TG +++ + Sbjct: 5 LSALRMIEREREIPMKVLVDLIEQALLIAYQRTEGYYPDARAELDTKTGKATIWAV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E ++ I P FGR+A Q+A+ VI Q++R+ E + Sbjct: 61 -EFDDDDNPIG-----------------EFDDTPEGFGRIAAQTARNVIHQRLRDVEDES 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 FK+ GEI+SG +++ +Y +++ V+LG+ + V+ E + E G R++ YI D Sbjct: 103 VLGSFKNHEGEIVSGVIQQGKYEDMVQVNLGDVEAVLPPHEQVPGETYEHGRRIRVYITD 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V + Q+GP V +SR+HP + KLF EVPEI +G V++ +++R+ G R K+AV + + Sbjct: 163 VHKGQKGPSVTVSRSHPNLVRKLFAHEVPEIADGQVELVSLAREAGHRTKIAVAAKVPGL 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGR 307 + GAC+G G+RV+AV+ EL +EKIDIV ++ + A FV NAL PA KV +DE Sbjct: 223 NAKGACIGEYGTRVRAVMGELGEEKIDIVDYNENPAKFVANALSPAKAAKVEVIDESAKM 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 VP +QLSLAIG+ GQN RLA++LTGW IDI+ + Sbjct: 283 ARAFVPNDQLSLAIGKEGQNARLAAKLTGWKIDIVGTD 320 >gi|189440604|ref|YP_001955685.1| transcription elongation factor NusA [Bifidobacterium longum DJO10A] gi|189429039|gb|ACD99187.1| Transcription elongation factor [Bifidobacterium longum DJO10A] Length = 355 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P +G D P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGSF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|227546511|ref|ZP_03976560.1| transcription elongation factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133908|ref|YP_004001247.1| nusa [Bifidobacterium longum subsp. longum BBMN68] gi|322689895|ref|YP_004209629.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis 157F] gi|322691836|ref|YP_004221406.1| transcription elongation factor NusA [Bifidobacterium longum subsp. longum JCM 1217] gi|227213060|gb|EEI80939.1| transcription elongation factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516439|emb|CBK70055.1| transcription termination factor NusA [Bifidobacterium longum subsp. longum F8] gi|311773202|gb|ADQ02690.1| NusA [Bifidobacterium longum subsp. longum BBMN68] gi|320456692|dbj|BAJ67314.1| transcription elongation factor NusA [Bifidobacterium longum subsp. longum JCM 1217] gi|320461231|dbj|BAJ71851.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P +G D P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|323356820|ref|YP_004223216.1| transcription elongation factor [Microbacterium testaceum StLB037] gi|323273191|dbj|BAJ73336.1| transcription elongation factor [Microbacterium testaceum StLB037] Length = 329 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 28/347 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRL 65 L + + EK I D + ++ +I A +I R E++ +TG + +F Sbjct: 5 LALLKTIEREKEIPFDELARIIEQAILTAYAKHISPSGEIPAGARAELDRKTGHVGIF-- 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + E IG + P DFGR+A +AKQVI Q++R+ Sbjct: 63 -TPVTDEE----------------GAVIG---EEEQAPDDFGRIAAFAAKQVISQRLRDI 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 D EF+ K G+I++G V++ V VDLG + ++ +E + E G R++ Sbjct: 103 ADDAVLGEFRGKEGDIVAGVVQQGPNPRMVHVDLGTVEAILPPEEQVPGETYAHGSRLRV 162 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V + +GPQ+ +SRTHP + KLF +EVPEI G+V++ +++R+ G R+K+AV ++ Sbjct: 163 YVTSVSKGNKGPQITVSRTHPGLVRKLFALEVPEIAAGLVEIVSLAREAGHRSKIAVKAN 222 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKVVLDE 303 D +++ GAC+G G RV+AV EL EKIDI+ + + FV NAL PA + VLD Sbjct: 223 DPTVNAKGACIGELGRRVRAVTEELAGEKIDIIDYDAELPRFVANALSPAKVTSSFVLDA 282 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + +VP QLSLAIG+ GQN RLA++LTG IDI + N Sbjct: 283 STKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILEDN 329 >gi|298490031|ref|YP_003720208.1| NusA antitermination factor ['Nostoc azollae' 0708] gi|298231949|gb|ADI63085.1| NusA antitermination factor ['Nostoc azollae' 0708] Length = 425 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 204/369 (55%), Gaps = 29/369 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L ++ ++++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKELIESISRERNLPRLAVQSSIREALLKGYERYRRAQNLERKQFDEDYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VE+V N QISL+ + P G V + P +FGR+A Sbjct: 69 GEGFRVLSTKTIVEQVNNSDHQISLEEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVTSGFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDS 348 DI + + Sbjct: 369 DIKDKAKYD 377 >gi|213693052|ref|YP_002323638.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524513|gb|ACJ53260.1| NusA antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459229|dbj|BAJ69850.1| transcription elongation factor NusA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPGTLDDALAEALRLAYLKTPHAAKHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPH-----------PAPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|220907502|ref|YP_002482813.1| transcription elongation factor NusA [Cyanothece sp. PCC 7425] gi|219864113|gb|ACL44452.1| NusA antitermination factor [Cyanothece sp. PCC 7425] Length = 413 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 29/371 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56 L ++ +A++ E+++ + V + +++ K + + VEI+ E Sbjct: 9 LREMINAISRERNLPKYAVQGALQEALMKGYERYRRTLRLEGGHFDEDYFQNFDVEIDVE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VE+V+N QISL ++ +G V + P +FGR+A A Sbjct: 69 EEGFRVLATKTIVEQVDNPDHQISLSEVQEVAAEAQLGDTVILDVTPEQQEFGRMAAIQA 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRKLVQEEFQDLESTVLQARVLRFERRSVIMAVSSGFGQPEVEAELPKK 188 Query: 169 ETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVLEGPHRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L + + + ++V +QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVEEVRLMNPEERQAHILVTDDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSIN 350 DI Sbjct: 369 DIKDIATYDYE 379 >gi|313836822|gb|EFS74536.1| transcription termination factor NusA [Propionibacterium acnes HL037PA2] gi|314929769|gb|EFS93600.1| transcription termination factor NusA [Propionibacterium acnes HL044PA1] gi|314972198|gb|EFT16295.1| transcription termination factor NusA [Propionibacterium acnes HL037PA3] gi|328907626|gb|EGG27390.1| transcription elongation factor NusA [Propionibacterium sp. P08] Length = 323 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 27/341 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + +K I D +L+ + D++ A + +V+++ TG++ Sbjct: 5 LSTLRMIERDKDIPLDYLLTTLEDALLNAYDKTEAPVRGAKVQLDRTTGNV--------- 55 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSD-PLPPMDFGRVAVQSAKQVIIQKVREAERD 128 A + G V+ P DFGRVA +A+QVI Q++REAE + Sbjct: 56 --------------AVMLPEKDEEGEVIGWYDGTPEDFGRVAASTARQVIFQRLREAEDE 101 Query: 129 RQYLEFKDKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 ++Y F G++++G V++ + V VDLG +G++ E + E G R++ Y+ Sbjct: 102 QKYGHFAAVEGDVVTGVVQQSYRDTRTVRVDLGTLEGIMPPSEQVPGEKYFHGRRIRVYV 161 Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246 VR+E RGPQV++SRTHP + KLF MEVPEI +V++KA++R+ G R+K+AV S +S Sbjct: 162 VAVRKEARGPQVIVSRTHPNLVRKLFAMEVPEIEQEVVEIKALAREAGHRSKIAVVSHNS 221 Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDV 305 + GAC+G G RV+AV+ EL +EKIDI+ WS D A FV AL P+ V+ V +D Sbjct: 222 DVSAKGACIGPMGQRVRAVMHELGEEKIDIIDWSEDPAEFVGAALSPSKVSSVTVIDPKA 281 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 IVP QLSLAIGR GQN RLA++LTGW IDI + + Sbjct: 282 KTARAIVPDYQLSLAIGREGQNARLAARLTGWRIDIRPDNQ 322 >gi|315604477|ref|ZP_07879542.1| transcription termination factor NusA [Actinomyces sp. oral taxon 180 str. F0310] gi|315313804|gb|EFU61856.1| transcription termination factor NusA [Actinomyces sp. oral taxon 180 str. F0310] Length = 342 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 205/363 (56%), Gaps = 26/363 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + + ++ + +++ KA +L G +S R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVENEKGVSLETLVDAIEEALLKAYHNLPGAISQARIEIDKKTGRVTV--- 57 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +++ D +P + P +FGR+A +A+ VI+Q++R+A Sbjct: 58 -------------MAMDEDEDGNPIGEFDDT------PKNFGRIAQATARSVIMQRLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G++I+GTV+ R ++ + + V+ E + E R GDR++ Sbjct: 99 DDQRVFGDFAGREGQVITGTVQAPRPGRPTMVQVSDDFEAVLPDGEKTAGETYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +YI V R +RGP++ LSRTHP + LF EVPEI G+V++KA++R+ G R K+AV + Sbjct: 159 AYIVGVERTERGPRITLSRTHPNLVAGLFQREVPEIQQGLVKIKAIAREAGHRTKIAVVA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV++V+ EL EKIDIV +S D A FV N+L PA VT+VV+ Sbjct: 219 TRDGINAKGACIGPMGARVRSVMAELGGEKIDIVDYSDDPARFVANSLSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D IVP QLSLAIG+ GQN RLA++LTG+ IDI + E + Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTGFHIDIHADTETGDDAIASRVSTPDDV 338 Query: 363 MQA 365 + Sbjct: 339 TRR 341 >gi|189501596|ref|YP_001957313.1| transcription termination factor NusA [Candidatus Amoebophilus asiaticus 5a2] gi|189497037|gb|ACE05584.1| transcription termination factor NusA [Candidatus Amoebophilus asiaticus 5a2] Length = 411 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 127/415 (30%), Positives = 230/415 (55%), Gaps = 13/415 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L++ A K++DR V+ ++ + + +GT + + IN + GD+ ++R EV Sbjct: 6 LIETFAEFARSKNVDRPTVIRILEEVFKAMIHKKFGTDDNFDIIINLDQGDLQIWRFREV 65 Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ +ISL A+ + +IG VS+ + FGR A+ +A+Q +IQKV++ Sbjct: 66 VDDNSEDIWDHDKISLSEAKKIEEDFNIGEEVSEEISVDSFGRRAITAARQTLIQKVKDL 125 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKS 184 E+D YL++ +GE+I+ V ++ VI VD + + + E I ++ + G+ +++ Sbjct: 126 EKDALYLKYTQLIGEMITVEVHQILPQEVILVDEERKELFLPKSEQIFKDIFKKGEYIRA 185 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 ++ + ++ P+V+LSRT P F+ +LF EVPEI++GI+ +K V R+PG RAK+AV S Sbjct: 186 VVHRIDLQKSTPKVILSRTSPIFLERLFESEVPEIFDGIITIKKVVREPGERAKVAVESL 245 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D IDPVGACVG++GSR+ ++V EL++E ID++ ++ + ++ AL PA ++ + + D Sbjct: 246 DDRIDPVGACVGIKGSRIHSIVRELQNENIDVINYTDNLELYISRALSPAKISSIQMKGD 305 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 R+ V + +Q+SLAIG+ GQN++LAS+L ID+ E + Sbjct: 306 --RVAVYLKPDQVSLAIGKGGQNIKLASRLVDREIDVYREVDSIGED-------VNLEEF 356 Query: 365 AINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEG 419 A ++ I L G + + + ++ ++ET E+ ++ E Sbjct: 357 ADEIEPWIIDELKKTGLDSAKSVLAIPKEDLERRTDLEKETIDELYRVLKQEFEE 411 >gi|88855366|ref|ZP_01130030.1| transcription elongation factor NusA [marine actinobacterium PHSC20C1] gi|88815273|gb|EAR25131.1| transcription elongation factor NusA [marine actinobacterium PHSC20C1] Length = 333 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 119/351 (33%), Positives = 194/351 (55%), Gaps = 32/351 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT--------MSDIRVEINPETGDIS 61 L + + E+ I + ++ ++ +I A RV ++ +TG +S Sbjct: 5 LSVLRMMEREREIPFEELVQIIEQAIMSAYLKHVEAPEGKAAETAPTARVVLDRKTGHVS 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 ++ V E ++ +G P DFGR+A +AKQVI Q+ Sbjct: 65 VW-----VPEYDDE--------------GAIVGEA---EDSPSDFGRIAAFAAKQVINQR 102 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGD 180 +R+ D+ EFK + G+I++G +++ +I +DLG + ++ +E + E + G Sbjct: 103 LRDIGDDKVLGEFKGREGDIVAGVIQQGPNPRMIHIDLGTVEAIMPPEEQVPSEEYKHGS 162 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 R++ Y+ V + +GPQ+ +SRTHP + KLF +EVPEI +GIV++ +V+R+ G R K+A Sbjct: 163 RLRVYVTAVNKGDKGPQITVSRTHPSLVRKLFALEVPEIASGIVEITSVAREAGHRTKMA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKV 299 V +++ ++ G+C+G G RV+AV EL +EKIDIV +S + A FV NAL PA V + Sbjct: 223 VRATEPGVNAKGSCIGELGQRVRAVTAELNNEKIDIVDYSENLAVFVANALSPAKVSSSF 282 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 V+DE + +VP QLSLAIG+ GQN RLA++LTG IDI + + Sbjct: 283 VIDETTKAVRALVPDYQLSLAIGKEGQNARLAAKLTGARIDIQPDSILDED 333 >gi|325067076|ref|ZP_08125749.1| NusA antitermination factor [Actinomyces oris K20] gi|326771738|ref|ZP_08231023.1| transcription termination factor NusA [Actinomyces viscosus C505] gi|326637871|gb|EGE38772.1| transcription termination factor NusA [Actinomyces viscosus C505] Length = 346 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 141/359 (39%), Positives = 197/359 (54%), Gaps = 28/359 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL AD + ID D +L + D+I A + G + VEI+ TG +S+ Sbjct: 4 NMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSVLA 59 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+E + T G D P DFGR+A +A+ VI+Q++++ Sbjct: 60 PE--VDEEDQPT-----------------GEYFDD--TPDDFGRIAQATARSVIVQRIQD 98 Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 FKDK GE+ISGTV++ + V V L +G++ E + E R GDRV Sbjct: 99 RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHGDRV 158 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ DV R RG Q++LSRTHP + KLF EVPE+ +G V++ +V+R+ G R K+AV Sbjct: 159 RAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPELSSGDVEIVSVAREAGHRTKMAVR 218 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 S ++ GAC+G G RV+AV+TEL EKIDIV +S D A F+ NAL PA V V V+ Sbjct: 219 SKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDYSEDPARFIANALSPARVAAVGVI 278 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E ++ Sbjct: 279 DAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITPGQGSQSDD 337 >gi|23466164|ref|NP_696767.1| transcription elongation factor NusA [Bifidobacterium longum NCC2705] gi|317482183|ref|ZP_07941206.1| transcription termination factor NusA [Bifidobacterium sp. 12_1_47BFAA] gi|23326902|gb|AAN25403.1| N utilization substance homolog [Bifidobacterium longum NCC2705] gi|316916417|gb|EFV37816.1| transcription termination factor NusA [Bifidobacterium sp. 12_1_47BFAA] Length = 355 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 192/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + +A++++ A RVE++ +G+ +++ E+ VE E+ Sbjct: 11 LAAEQGIDPGTLDDALAEALRLAYLKTPHAARHARVELDERSGNFTVWAADEIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P +G D P DFGR+A +A+QVI Q R AE ++ + F Sbjct: 71 NPY-----------PVPKLGEEYDD--TPRDFGRLAAATARQVITQLFRRAEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R K+AV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKIAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E Sbjct: 238 ALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|261749099|ref|YP_003256784.1| transcription elongation factor NusA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497191|gb|ACX83641.1| transcription elongation factor NusA [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 419 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 120/420 (28%), Positives = 225/420 (53%), Gaps = 11/420 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 + L+ EK+IDR +++++ +SI+ R Y + + + +NP+ GD+ ++ Sbjct: 1 MDNEALIDSFSVFKDEKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV++ V++ +I L AR + +IG V++ + GR A+ S +Q ++ K Sbjct: 61 RNRIVVQDGTVKDVNKEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + Y +FK+K+GEII+ V + +I+ D ++ V+ + E I + R GD Sbjct: 121 INEYDNTNIYKKFKNKIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V++ + V + P +L+R F+ +LF +E+PE+ G++ VK V+R PG +AK++ Sbjct: 181 PVRALVKRVDWKDNKPLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVS 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDP+GACVGM+GSR+ +V EL++E ID++ ++ + ++ AL PA V+ + Sbjct: 241 VDSYDDRIDPIGACVGMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMME 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++E+ + V V E++S AIGR GQN+RLASQLTG+ I I + + + Sbjct: 301 VNEEHKYVNVYVKLEEISKAIGRGGQNIRLASQLTGYKIHIFRDFPYEDDVELTEFSD-- 358 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 ++ + G + + + ++++ +E+ ++ ++ E Sbjct: 359 ------EIEPEVLERFHKVGLTTAKSVLNYRNNDLSKRTNLEEKIINKVVSILKKEFEEE 412 >gi|239917227|ref|YP_002956785.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] gi|239838434|gb|ACS30231.1| transcription termination factor NusA [Micrococcus luteus NCTC 2665] Length = 328 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 121/337 (35%), Positives = 186/337 (55%), Gaps = 24/337 (7%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + E+ I D ++ + ++ A G + RVEI+ TG ++ + Sbjct: 5 MSALRMLEAEREIPMDRLIPTIEQALLMAYHRTPGALKRARVEIDRATGHVTAWAT---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E++ I P FGRVA +A+QV+IQ++RE + D+ Sbjct: 61 -ELDEDDTPIG-----------------EFDDTPNGFGRVAASTARQVMIQRMREEDDDK 102 Query: 130 QYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKDK GE++SG +++ V V+LG + V+ E + E+ G R+++Y+ Sbjct: 103 VLGEFKDKEGELVSGVIQQGLNRHMVQVNLGTLEAVLPPPEQVPGEDYAHGRRIRAYVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP V +SR+HP + KLF +EVPEI +G V++ A++R+ G R K+AV ++ + Sbjct: 163 ATRGAKGPSVTVSRSHPGLVRKLFELEVPEIADGSVEITALAREAGHRTKMAVRATRPGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GA +G GSRV+AV+TEL DEKIDI+ D A + NAL PA V + D D Sbjct: 223 NAKGASIGEMGSRVRAVMTELNDEKIDIIDHVDDPAAMIANALSPATTVSVEILDADQHS 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +VP+ QLSLAIG+ GQN RLA++LTGW IDI+ + Sbjct: 283 ARAVVPQYQLSLAIGKEGQNARLAAKLTGWRIDIVGD 319 >gi|81300831|ref|YP_401039.1| transcription elongation factor NusA [Synechococcus elongatus PCC 7942] gi|81169712|gb|ABB58052.1| NusA antitermination factor [Synechococcus elongatus PCC 7942] Length = 441 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 204/371 (54%), Gaps = 30/371 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDI 49 MV+ LE Q+ A++ +K + +V+ + +++ K + +I Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60 Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107 VE++ E + +V +VEN QI+L ++ P G +V + P DFG Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NS 161 R+A KQV+ QK+R+ +R EF+D ++ V R E +VI+ + Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEV 180 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + + R E + +N R + ++ +V +RGPQ+++SR + +V LF EVPEI Sbjct: 181 EAELPRREQLPNDNYRANATFRVFLKEVSEVPRRGPQLIVSRANAGLVVYLFENEVPEIQ 240 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 241 DGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEK 300 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WSPD AT++ NAL PA V +V +D + V+V +QLSLAIG+ GQNVRLA+ Sbjct: 301 IDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAA 360 Query: 333 QLTGWTIDIIT 343 +LTGW IDI Sbjct: 361 RLTGWKIDIKD 371 >gi|269215361|ref|ZP_06159215.1| transcription termination factor NusA [Slackia exigua ATCC 700122] gi|269131217|gb|EEZ62291.1| transcription termination factor NusA [Slackia exigua ATCC 700122] Length = 395 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 42/370 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+A+E+ ID ++ + S+ K+ +++ + RV I+ TG I ++ L+ V Sbjct: 1 MDALQALAHERKIDEFYLIERLEASLAKSYQNILDLEWEARVTIDRSTGRIYVYELVPVG 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIG---GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E P + G + P + R A Q+AK VI VREA Sbjct: 61 E------------------PDPETGEYADFEEKDVTPANVSRTAAQNAKSVIAAIVREAG 102 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISREN 175 R Y EF+D+V +I+ GTV + I+ + + + ++E + E Sbjct: 103 RQSIYEEFRDRVDDIVGGTVLQTTPDFTIIKIREGVEAELPHYDLKRFPDEQNEVPAGER 162 Query: 176 LRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R R+K+ I +VR + +++SRTHP + +LF +EVPEIY+G+V+ Sbjct: 163 YRHNQRIKTVIIEVRDPRSMEPRARGEQTRPSIVVSRTHPSLIRRLFEIEVPEIYDGVVE 222 Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSAT 285 +K+++R+ G+R+K+AV S +S++DPVGACVG +GSRV+ VV ELR+E++D++ WS D A Sbjct: 223 IKSIAREAGARSKVAVASRESNLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDPAK 282 Query: 286 FVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 +V NAL PA VT+V +DED V+VP +QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 YVANALSPARVTRVTIDEDKQYATVVVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSSS 342 Query: 346 EDSINRQKDF 355 + Sbjct: 343 YAGQMVPETN 352 >gi|56752082|ref|YP_172783.1| transcription elongation factor NusA [Synechococcus elongatus PCC 6301] gi|56687041|dbj|BAD80263.1| N utilization substance protein A [Synechococcus elongatus PCC 6301] Length = 441 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 204/371 (54%), Gaps = 30/371 (8%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDI 49 MV+ LE Q+ A++ +K + +V+ + +++ K + +I Sbjct: 3 MVTLPGLE--QLIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNI 60 Query: 50 RVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFG 107 VE++ E + +V +VEN QI+L ++ P G +V + P DFG Sbjct: 61 DVELDVEQEGFRVLATKTIVNQVENPDHQIALADVQEVAPDAQAGEIVVLDVTPDKDDFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NS 161 R+A KQV+ QK+R+ +R EF+D ++ V R E +VI+ + Sbjct: 121 RMAAIQTKQVLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEV 180 Query: 162 DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 + + R E + +N R + ++ +V +RGPQ+++SR + +V LF EVPEI Sbjct: 181 EAELPRREQLPNDNYRANATFRVFLKEVSEEPRRGPQLIVSRANAGLVVYLFENEVPEIQ 240 Query: 221 NGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 +G+V++ AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EK Sbjct: 241 DGVVRIVAVAREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEK 300 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ID++ WSPD AT++ NAL PA V +V +D + V+V +QLSLAIG+ GQNVRLA+ Sbjct: 301 IDVIRWSPDPATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAA 360 Query: 333 QLTGWTIDIIT 343 +LTGW IDI Sbjct: 361 RLTGWKIDIKD 371 >gi|194476586|ref|YP_002048765.1| transcription elongation factor NusA [Paulinella chromatophora] gi|171191593|gb|ACB42555.1| transcription elongation factor NusA [Paulinella chromatophora] Length = 468 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 131/409 (32%), Positives = 200/409 (48%), Gaps = 32/409 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV S + +++ K + ++ V ++ E Sbjct: 12 LIEDISEEKKLPPQVVESALREALLKGYERYRRTRYLGLIANPFEQDYFNNFDVALDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAK 115 + +VEEVE+ QI+L R + G V + P DFGR+A K Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALSDVRQVTEDVHAGDTVVLDVTPAKEDFGRMAAAMTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ +K+RE +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLSRKLREQQRRMIQEEFADLEDPVLTARVIRFERQSVILAVSSGLSRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ ++ +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEISEVPRRGPQLFVSRVNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDPGS-------RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP Sbjct: 252 VAREANPPSRTVSPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D A ++ N++ PA V + +D V+V +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPAQYISNSISPARVHNIRLIDPAGHHAHVLVTPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IIT-EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA 388 I E DS + + + LVAE A Sbjct: 372 IKDSETYDSAYEDATISNLIFKRDKEGTIQSEFESRLVAEQITRTRPDA 420 >gi|256827233|ref|YP_003151192.1| transcription termination factor NusA [Cryptobacterium curtum DSM 15641] gi|256583376|gb|ACU94510.1| transcription termination factor NusA [Cryptobacterium curtum DSM 15641] Length = 402 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 209/358 (58%), Gaps = 42/358 (11%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 EL++ A+A+E+ ID ++ + S+ K+ +++ D RV I+ TG I ++ E Sbjct: 5 ELIEALHALAHERKIDEFYLIERLEASLAKSYQNILDLEWDARVTIDRNTGKIYVY---E 61 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124 +V + E P + G + P D R+A Q+AK VI VRE Sbjct: 62 LVPQGE---------------PDPETGEYTDFEERDVTPDDVSRIAAQNAKGVINAIVRE 106 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173 A R Y EF +VG++++GTV + I+ + + + R+E + Sbjct: 107 AGRQSIYEEFSQRVGDLVTGTVLQGTPDFTIIKIRDGVEAELPHYDQKRFPDERNERPAN 166 Query: 174 ENLRPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 E R R+K+ I +VR P +++SRTHP + +LF +EVPEIY+G+ Sbjct: 167 ERYRHNQRLKTLIIEVRNPNSEESRQRGEQARPSIVVSRTHPDLIRRLFEIEVPEIYDGV 226 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V++K+++R+PG+R+K+AV S ++ +DPVGACVG +GSRV+ VV ELR+E++D++ WS D+ Sbjct: 227 VEIKSIAREPGARSKVAVVSHENHLDPVGACVGPKGSRVRMVVEELRNERVDVIQWSDDA 286 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT+V NAL PA V+ V +DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI Sbjct: 287 ATYVRNALSPARVSHVDIDEETHYATVIVPDDQLSLAIGKEGQNARLAARLTGWHIDI 344 >gi|257126084|ref|YP_003164198.1| transcription elongation factor NusA [Leptotrichia buccalis C-1013-b] gi|257050023|gb|ACV39207.1| NusA antitermination factor [Leptotrichia buccalis C-1013-b] Length = 414 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 212/380 (55%), Gaps = 5/380 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++ L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+ Sbjct: 1 MRGRDQKIFLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDV 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 +F +VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++Q Sbjct: 61 KVFSQRLIVENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ + +FK+ I+S V++ E GN+ +D+ + ++ E +N Sbjct: 121 KVRECEKRNIFNKFKEIENSIVSANVRKTDEKGNLYIDINGLEAIVPFKELSPTDNFVQN 180 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +RVK Y+ +V + + +SR + + L +EVPEI I+++K ++R+ GSRAK+ Sbjct: 181 ERVKIYVGNVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKV 240 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S D ++D GAC+G G R+Q ++ ELR EKIDIV+W+ D FV NAL PA V V Sbjct: 241 AVYSEDENLDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLV 300 Query: 300 VL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +E+ +V+V + QLSLAIG++GQN RLA++L G IDI TE + + Sbjct: 301 EIVEGEEENTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEPFEIEQNDEYE 360 Query: 356 NERTQFFMQAINVDEIIAHL 375 E F ++ D + Sbjct: 361 LEEETAFHNSVESDLEESEF 380 >gi|119485069|ref|ZP_01619454.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106] gi|119457297|gb|EAW38422.1| transcription elongation factor NusA [Lyngbya sp. PCC 8106] Length = 409 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 204/384 (53%), Gaps = 29/384 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57 L + ++ E+++ + V + +++ K + + VE++ E Sbjct: 9 LKDMIQNISQERNLPKQAVEEALREALLKGYERYRRTVQINTQFTEDYFDNFDVELDVEE 68 Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + L +VEEV N QISL+ R+ P +G V+ + P DFGR+A Sbjct: 69 EGFRVLAKNLTIVEEVTNQDHQISLQDVREVAPEAQLGDTVTLDVTPEQSDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EFKD ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRKMIQDEFKDLESSVLQARVLRFERQSVIMSVNSGFGHQEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R + Y+ V + QRGPQ+++SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFRVYLKRVSQGSQRGPQLIVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSTHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD +T++ NAL PA V +V ++ + R ++VP++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSTYIANALSPARVDEVRLVNPEERRAHILVPEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFM 363 DI + + + Sbjct: 369 DIKDTAKYDAVAEDQKIAEQYNYQ 392 >gi|170782217|ref|YP_001710550.1| transcription elongation factor NusA [Clavibacter michiganensis subsp. sepedonicus] gi|169156786|emb|CAQ01949.1| transcription elongation protein NusA [Clavibacter michiganensis subsp. sepedonicus] Length = 335 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 119/353 (33%), Positives = 189/353 (53%), Gaps = 33/353 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD---------IRVEINPETGDI 60 L + + E+ I + ++S++ +I A RV ++ ++G + Sbjct: 5 LSVLRLMEREREIPFEELVSIIEQAILTAYLKHTDQADAKPVADGVPPARVHLDRKSGHV 64 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ V E++ I P DFGR+A +A+QVI Q Sbjct: 65 SVH-----VPELDEDGLVIG-----------------ESEDSPSDFGRIAAFAARQVINQ 102 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPG 179 ++R+ DR EFK + G+I++G +++ +I VDLG + ++ +E + E G Sbjct: 103 RLRDIGDDRILGEFKGREGDIVAGVIQQGPNPRMIHVDLGTIEAILPPEEQVPGEKYVHG 162 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 R++ Y+ V R +GPQ+ +SRTHP + KLF +EVPEI +G+V++ +++R+ G R K+ Sbjct: 163 SRLRVYVTSVSRGAKGPQITVSRTHPSLVRKLFALEVPEIASGLVEIVSLAREAGHRTKI 222 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTK 298 AV +++ I+ GAC+G G RV+AV EL DEKIDIV +S FV NAL PA + Sbjct: 223 AVRATEPGINAKGACIGELGQRVRAVTAELNDEKIDIVDYSESLPVFVGNALSPARVTSS 282 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+D+ + +VP QLSLAIG+ GQN RLA++LTG IDI + + Sbjct: 283 FVIDQATKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSILEGDD 335 >gi|17231321|ref|NP_487869.1| transcription elongation factor NusA [Nostoc sp. PCC 7120] gi|17132963|dbj|BAB75528.1| transcription termination factor [Nostoc sp. PCC 7120] Length = 425 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 139/412 (33%), Positives = 216/412 (52%), Gaps = 38/412 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + ++++ E+++ R V + + +++ K R + + VE++ + Sbjct: 9 LKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P +G V + P +FGR+A Sbjct: 69 EEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + ++ + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSI---------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 DI + + R K E ++ +E L E F Sbjct: 369 DIKDKAKYDQVAEDAKFVAARAKYQLEEDDIESDELDYEENQQGELEDESFD 420 >gi|308176799|ref|YP_003916205.1| transcription elongation protein NusA [Arthrobacter arilaitensis Re117] gi|307744262|emb|CBT75234.1| transcription elongation protein NusA [Arthrobacter arilaitensis Re117] Length = 327 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 119/344 (34%), Positives = 188/344 (54%), Gaps = 24/344 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + ++ I DV++ + ++ A G M R I G +++ V Sbjct: 5 LNALRILEKDRDIPMDVLIPTIESALLLAYNKTEGAMPGARAHIERSNGHVAIL-----V 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ + + +G P FGR+A +A+QVI+Q++REAE + Sbjct: 60 ED--------------RDNAGVLLGEF---DDTPHGFGRIAASTARQVIMQRLREAEDAQ 102 Query: 130 QYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 E+ +VG +ISG +++ V V +G+ + ++ E E + G+R+++Y+ Sbjct: 103 VVGEYAARVGTLISGVIQQGYSSHMVQVKIGDLEALLPPVEQSPGEKYQHGNRLRAYVVS 162 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 R +GP V LSR+HP + LF MEVPEI +G V V+A++R+ G R K+AV ++ + + Sbjct: 163 AERGNKGPAVTLSRSHPNLVRLLFEMEVPEIADGTVAVEALAREAGHRTKIAVHATKAGV 222 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV+ EL DEKIDIV ++ D A F+ AL P+ V V + D + R Sbjct: 223 NAKGACIGEMGTRVRAVMNELNDEKIDIVDYNEDPAKFIAAALSPSKVISVEILDAEERR 282 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 V+VP QLSLAIG+ GQN RLA++LTGW IDI+ + Sbjct: 283 ARVVVPDSQLSLAIGKEGQNARLAAKLTGWRIDILAASGGKEPQ 326 >gi|329947836|ref|ZP_08294768.1| transcription termination factor NusA [Actinomyces sp. oral taxon 170 str. F0386] gi|328523460|gb|EGF50558.1| transcription termination factor NusA [Actinomyces sp. oral taxon 170 str. F0386] Length = 346 Score = 266 bits (679), Expect = 8e-69, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 197/359 (54%), Gaps = 28/359 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL AD + ID D +L + D+I A + G + VEI+ TG +S+ Sbjct: 4 NMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSVLA 59 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V+E + T G D P DFGR+A +A+ VI+Q++++ Sbjct: 60 PE--VDEDDQPT-----------------GEYFDD--TPDDFGRIAQATARSVIVQRIQD 98 Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 FKDK GE+ISGTV++ + V V L +G++ E + E+ R GDRV Sbjct: 99 RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGESYRHGDRV 158 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+AV Sbjct: 159 RAYVTDVSRGTRGAQIVLSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKMAVR 218 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V V+ Sbjct: 219 SKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAVGVI 278 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E ++ Sbjct: 279 DAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITPGQGSQSDD 337 >gi|291457236|ref|ZP_06596626.1| transcription termination factor NusA [Bifidobacterium breve DSM 20213] gi|291381071|gb|EFE88589.1| transcription termination factor NusA [Bifidobacterium breve DSM 20213] Length = 351 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 115/330 (34%), Positives = 192/330 (58%), Gaps = 17/330 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVEN 74 +A E+ ID + + +A++++ A RVE++ G +++ ++ VE E+ Sbjct: 11 LAAEQGIDPETLDDALAEALRLAYLKTPHAAKHARVELDERAGSFTVWAADDIPVEPTED 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ ++G D P DFGR+A +A+QVI Q R+ E ++ + F Sbjct: 71 DPH-----------PAPELGEEYDD--TPHDFGRLAAATARQVITQLFRKVEDEKVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++++G +++ + NV V +G + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLVTGIIQQDASDPTNVHVAMGEVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 +GP++++SR+HP+ + KLF EVPE+ +G V + A++R+ G+R KLAV ++ ++P G Sbjct: 178 IKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMAIAREAGARTKLAVKANTDGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G G+RV+AV+ L EKIDIV +S D A FV AL PA+ T V + E Sbjct: 238 ALIGPSGARVRAVMENLGPEKIDIVDYSDDPAKFVAAALSPAVATGVQVISEKNKTAIAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 298 IHDDQLSLAIGKEGQNARLAAKLTGWKIGI 327 >gi|86133947|ref|ZP_01052529.1| transcription elongation protein NusA [Polaribacter sp. MED152] gi|85820810|gb|EAQ41957.1| transcription elongation protein NusA [Polaribacter sp. MED152] Length = 418 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 133/426 (31%), Positives = 232/426 (54%), Gaps = 21/426 (4%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + D+ + KSIDR ++S++ + + A + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIDSFSEFKDNKSIDRVTLMSILEEVFRAALKRKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + E+ +I L AR +P +IG VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRVVVADGFSEDDNEEIELSEARKIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + + +FKD GE+ S V + + +I+ D ++ V+ + E I + R GD Sbjct: 121 IYEHDSTNIFKQFKDLEGELFSAEVHHIRHNAIILLDDEGNEIVLPKSEQIRSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V P ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+A Sbjct: 181 NVRGVIKTVELRGNKPAIILSRTSPAFLNKLFEQEIPEVFDGLITVEGVARIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ AL PA VT + Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSME 300 Query: 301 L--DEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + E+ R+ V++ E++S AIGR G N+RLAS+LTG+ ID+ E + + + Sbjct: 301 ITMYEEEKNGKKGRVSVLLKPEEVSKAIGRGGVNIRLASELTGYEIDVQREGLEEEDVEL 360 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 +++ + G + ++E+ +EET +++Q Sbjct: 361 TEFID--------EIEDWVITEFKKIGLDTARSVLETSVAELVKRTDLEEETIIDVQRIL 412 Query: 414 REYLEG 419 +E E Sbjct: 413 KEEFED 418 >gi|317057642|ref|YP_004106109.1| NusA antitermination factor [Ruminococcus albus 7] gi|315449911|gb|ADU23475.1| NusA antitermination factor [Ruminococcus albus 7] Length = 372 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 205/370 (55%), Gaps = 21/370 (5%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + + E ID+DV++ + + I KA + IRV+I P TG + + L Sbjct: 2 NEQFFNALADLVSENEIDKDVLIEKIREGIIKAIKKENPESEHIRVDIEPATGKLEMCIL 61 Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 EV V V++ +I + A+ DP I +G V P+ P GRVA Q AKQ I ++ Sbjct: 62 KEVMKVMFVDDPANEIYIGEAQTYDPDIKVGDWVEIPVNPAKIGRVAAQFAKQSIKHDIK 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY--GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + ER++ ++KDK EI++ TV++VE GN ++ + ++ R E I E L+ GD+ Sbjct: 122 DFERNKLIEQYKDKEHEIVTATVQKVEPATGNAVITIDKNEHYFYRSEQIPGEVLKEGDK 181 Query: 182 VKSYIYDVRREQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 +K YI + ++ V LSRTH + +LF +EVPEI +G V++K++SR G R+K+A Sbjct: 182 IKVYIVSLGGGEKRQPVVKLSRTHKDLVKRLFELEVPEIADGTVEIKSISRTEGVRSKIA 241 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V+S D ++D VGAC+G + SR+ AVV EL+ EKID++ W D A F+ AL PA V V Sbjct: 242 VWSKDKNVDAVGACIGPKKSRISAVVQELKGEKIDVINWVEDEAEFIAKALAPAEVLSVE 301 Query: 301 LDEDV----------------GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 L E + VIVP Q SLAIG +GQN +LA+ LTG+ IDI+ E Sbjct: 302 LLEPEVRIEHKGEEKEFERVIKKCRVIVPNSQFSLAIGNKGQNAKLAAGLTGYKIDIVPE 361 Query: 345 EEDSINRQKD 354 ++ Sbjct: 362 NAPESAETEE 371 >gi|118462823|ref|YP_882872.1| transcription elongation factor NusA [Mycobacterium avium 104] gi|118164110|gb|ABK65007.1| transcription termination factor NusA [Mycobacterium avium 104] Length = 351 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 31/359 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 283 IDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEH 341 >gi|41409007|ref|NP_961843.1| transcription elongation factor NusA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397366|gb|AAS05226.1| NusA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 351 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 31/359 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEDGNVISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 V+ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 VRCYVIGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 KSNLPGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSI 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + + Sbjct: 283 IDQAARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEH 341 >gi|261416680|ref|YP_003250363.1| NusA antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373136|gb|ACX75881.1| NusA antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327396|gb|ADL26597.1| N utilization substance protein A [Fibrobacter succinogenes subsp. succinogenes S85] Length = 407 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 144/381 (37%), Positives = 210/381 (55%), Gaps = 16/381 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + ++ LL + V +KS+D V+L + ++ AAR I V+I+ ET ++ Sbjct: 1 MKNEPKVNLLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEV 60 Query: 61 SLFRLLEVVEEVENYTCQIS-------------LKVARDRDPSIDIGGVVSDPLPPMDFG 107 +F +EVV++ +Y ++ + ARD + G + LP FG Sbjct: 61 HVFLNVEVVDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFG 120 Query: 108 RVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG-NSDGVIR 166 R A+Q+AKQ++ Q +R AE R ++ ++G II+GTV R+E NVIVDLG + + Sbjct: 121 RQAIQTAKQLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELP 180 Query: 167 RDETISRENLRPGDRVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 E I E L G VK+ I V + QV+LSR++ F+ L EVPEIY G V+ Sbjct: 181 AREQIPHERLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVE 240 Query: 226 VKAVSRDP-GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +KAV+RD RAK+AV+S D IDPVGACVGM+G+RVQ +V EL +E+IDIV W + Sbjct: 241 IKAVARDSKNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFD 300 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV +L PA V K+ D RI +IV E L+ AIG+ GQNV LA +L +D+ E Sbjct: 301 VFVQRSLAPASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDVHGE 360 Query: 345 EEDSINRQKDFNERTQFFMQA 365 +E S ++ N + Sbjct: 361 QEWSQMDEEAKNNILAPNYED 381 >gi|119511041|ref|ZP_01630161.1| transcription elongation factor NusA [Nodularia spumigena CCY9414] gi|119464292|gb|EAW45209.1| transcription elongation factor NusA [Nodularia spumigena CCY9414] Length = 423 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 137/415 (33%), Positives = 218/415 (52%), Gaps = 29/415 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L ++ ++++ E+++ R V + + +++ K + + + VE++ E Sbjct: 7 LKELIESISRERNLPRLAVQTAIREALLKGYERYRRAQNLEKRQFDEEYFDNFEVELDIE 66 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VE V+N QISL+ + P +G V + P +FGR+A Sbjct: 67 GEGFRVLSTKSIVEAVDNTDHQISLEEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 126 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + + Sbjct: 127 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVASGFGQPEVEAELPKR 186 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 187 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 246 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 247 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 306 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD +T++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 307 PDPSTYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 366 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 DI + + + + Q D + L EE ++SE Sbjct: 367 DIKDKAKYDYAGEDTKFAAARAKYQPEEDDLELEELDYENQEQLEEEDESFEMSE 421 >gi|319951028|ref|ZP_08024892.1| transcription elongation factor NusA [Dietzia cinnamea P4] gi|319435308|gb|EFV90564.1| transcription elongation factor NusA [Dietzia cinnamea P4] Length = 328 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 124/346 (35%), Positives = 191/346 (55%), Gaps = 31/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + + ++ E+ I D ++ + +++ A + G R+ ++ + G +++ Sbjct: 5 MAALNMLSLEREIPLDDLVQTLENALLTAYKRTDGAHRVARIALDRKAGTVAVLA----- 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 EV+ +I + P DFGRVA +A+Q+I+Q++REAE DR Sbjct: 60 AEVDEDGNRIG-----------------EFDVTPSDFGRVAAATARQIILQRLREAETDR 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y + + GE++SG ++ N V+V +G ++G I E + E+ R GDR Sbjct: 103 IYGDLVTREGEVVSGVIQSDSRANARGIVVVHIGPENGGTEGTIAPAEQVPGESYRHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K ++ V + G V LSRTHP + LF +EVPEI +G V++ A++R+ G R K+AV Sbjct: 163 IKCHVVGVHKGPHGASVSLSRTHPDLVRGLFALEVPEIGDGSVRIAAIAREAGHRTKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ S ++ GAC+G G+RV+AV+ EL EKIDIV + D FV NAL PA V V + Sbjct: 223 ESTVSGLNAKGACIGPNGARVRAVMAELNGEKIDIVDYDDDPTVFVGNALSPAKVISVTV 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 DE V+VP QLSLAIG+ GQN RLA +LT W IDI ++ E Sbjct: 283 ADEQARAARVVVPDYQLSLAIGKEGQNARLAHRLTQWRIDIHSDAE 328 >gi|37523058|ref|NP_926435.1| transcription elongation factor NusA [Gloeobacter violaceus PCC 7421] gi|35214061|dbj|BAC91430.1| glr3489 [Gloeobacter violaceus PCC 7421] Length = 383 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 29/367 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAA---RSLYGTMS---------DIRVEINPETGDI 60 + ++ ++++ + V + ++++K R Y + VE++ + Sbjct: 13 IETISRQRNLPKHAVKEALIEALKKGYERFRKTYRDPRENSEEMAFDNFIVELDTDREGF 72 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQVI 118 + +VE V + +I+L R+ P + GG V + P DFGR+A KQV+ Sbjct: 73 RVLATKTIVETVSDTDQEIALIEVREVAPDAEPGGTVVVDVTPEKGDFGRMAAIQTKQVL 132 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETIS 172 QK+R+ +R EF++ G ++ V R E +VI + + + ++E + Sbjct: 133 SQKLRDQQRKLIQEEFRELEGTVLQARVMRFEGRSVICAVSSGFGQNEVEAELPKNEQLP 192 Query: 173 RENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E R G K ++ V +RGPQ+L+SR +V LF EVPEI + IV++ AV+R Sbjct: 193 NEPYRIGSAFKVFLRKVWEGSRRGPQLLVSRADAGLVVYLFANEVPEIEDEIVRIVAVAR 252 Query: 232 DP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 + G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD A Sbjct: 253 EANPPSRTVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDPA 312 Query: 285 TFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 T++ NAL PA V +V +D D + VIVP +QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 313 TYISNALSPARVIQVRLVDPDARQAHVIVPDDQLSLAIGKEGQNVRLAARLTGWKIDIKK 372 Query: 344 EEEDSIN 350 E S Sbjct: 373 SSEYSAE 379 >gi|269219599|ref|ZP_06163453.1| transcription termination factor NusA [Actinomyces sp. oral taxon 848 str. F0332] gi|269210841|gb|EEZ77181.1| transcription termination factor NusA [Actinomyces sp. oral taxon 848 str. F0332] Length = 330 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 131/339 (38%), Positives = 197/339 (58%), Gaps = 26/339 (7%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 V E I DV++ + D++ A + + G + RVE++ TG ++++ Sbjct: 8 LRIVESELGISVDVIVGAIEDALLHAYQRVPGAVRGARVEMDRNTGKVTVY--------- 58 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 A + D ++ G D P DFGR+A +A+ +I Q++R+AE DR Sbjct: 59 -----------APEVDEEGEVIGEFDD--TPGDFGRIATSTARSIIAQRLRDAETDRVLG 105 Query: 133 EFKDKVGEIISGTVK---RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDV 189 FK K GE++SG V+ R + +++VD+G + ++R +E + E R GD +++ + +V Sbjct: 106 SFKGKQGEVVSGVVQQNPRHDSRDLLVDVGEHEAILRVEEQVPTERFRHGDHIRALVLEV 165 Query: 190 RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 RG V LSRTHP F KLF MEVPEI +G V++ A++R+ G RAK+AV+S ++ Sbjct: 166 SVGTRGASVRLSRTHPDFARKLFEMEVPEIQDGTVEIVALAREAGHRAKIAVWSDIPDVN 225 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRI 308 GAC+G G RV+AV TEL EKIDIV + D F+ +L PA V +V + D+ + Sbjct: 226 AKGACIGHNGQRVRAVTTELGGEKIDIVDYDDDPKAFIAASLSPAKVVRVDILDKAERQA 285 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 VIVP Q SLAIG+ QNVRLA++LTGW+IDI E +D Sbjct: 286 RVIVPDGQTSLAIGKEAQNVRLAAKLTGWSIDIRKESDD 324 >gi|296394257|ref|YP_003659141.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] gi|296181404|gb|ADG98310.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] Length = 342 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 137/351 (39%), Positives = 205/351 (58%), Gaps = 31/351 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q A+ EK + + ++ +A ++ A + G SD RV+I+ + G + + V E Sbjct: 6 QTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHQSDARVDIDRKHGAVRV----LVAE 61 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 E+ +G P DFGR+A +A+QVI+Q++R+AE D+ Sbjct: 62 RDEDGNL---------------LGEY---DDTPDDFGRIATMTARQVILQRLRDAEGDQG 103 Query: 131 YLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRV 182 + + K G+I++G V+R N IV +G+ +GV+ E + E+L GDRV Sbjct: 104 FADLPVKEGDIVAGVVQRDARANERGLQIVRMGSELKSYEGVLPVAEQVPGESLVHGDRV 163 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K Y+ V+ +RGPQ+ LSRTHP + KLF +EVPEI +G VQ+ AV+R+ G R+K+AV Sbjct: 164 KCYVVSVKPGRRGPQITLSRTHPNLVRKLFALEVPEIGDGAVQIVAVAREAGHRSKIAVK 223 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV-TKVVL 301 S+ ++ GAC+G G RV+ V++EL EKID++ + D ATFV NAL PA VL Sbjct: 224 STVPGLNAKGACIGQNGQRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALLTRVL 283 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 D V + V+VP QLSLAIG+ GQN RLA++LTGW IDI +E++ + R+ Sbjct: 284 DPVVKAVRVVVPDSQLSLAIGKEGQNARLAARLTGWRIDIRSEQDPEVARK 334 >gi|221195874|ref|ZP_03568927.1| transcription termination factor NusA [Atopobium rimae ATCC 49626] gi|221184348|gb|EEE16742.1| transcription termination factor NusA [Atopobium rimae ATCC 49626] Length = 415 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 190/362 (52%), Gaps = 42/362 (11%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK ID +L + S+ K+ + RV I+ TG + ++ Sbjct: 4 EMMEALMTLCQEKHIDELYLLDRLEQSLAKSYADVLHLSYGARVTIDRTTGKVYVY---- 59 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +P + G + P R A Q AK I VR+ Sbjct: 60 --------------ELVPKGEPDEETGEYAEFDEVDVTPEGTSRFAAQHAKNEIRALVRD 105 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173 A R + Y EF ++G+II+GTV + I+ + + + RDE Sbjct: 106 AARQQIYEEFSHRIGDIITGTVLQSTPDFTIIKIREGVEAELPHFDLRRFPEERDERPFG 165 Query: 174 ENLRPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 E R+K+ I DVR P +++SRTHP + +LF +EVPE+Y GI Sbjct: 166 ERYGHNQRIKAIIIDVRNPNNAQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYEGI 225 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V +++V+R+PG R+K+AV SSD +DPVGACVG +GSRV+ VV+ELR E++D+V W D Sbjct: 226 VSIRSVAREPGIRSKIAVSSSDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDP 285 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A V +AL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI Sbjct: 286 ARCVASALSPARVSRVIIDAETRHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKN 345 Query: 344 EE 345 E Sbjct: 346 ET 347 >gi|320531905|ref|ZP_08032815.1| transcription termination factor NusA [Actinomyces sp. oral taxon 171 str. F0337] gi|320135874|gb|EFW27912.1| transcription termination factor NusA [Actinomyces sp. oral taxon 171 str. F0337] Length = 346 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 139/359 (38%), Positives = 195/359 (54%), Gaps = 28/359 (7%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N EL AD + ID D +L + D+I A + G + VEI+ TG +S+ Sbjct: 4 NMPELRGAADEL----GIDLDNLLPAIEDAILGAYSKVPGAIRGAHVEIDRRTGHMSVLA 59 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 V++ + T + P DFGR+A +A+ VI+Q++++ Sbjct: 60 PE--VDDDDQPTGE-------------------YFDDTPDDFGRIAQATARSVIVQRIQD 98 Query: 125 AERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRV 182 FKDK GE+ISGTV++ + V V L +G++ E + E R GDRV Sbjct: 99 RRDFEVLGAFKDKTGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPAERYRHGDRV 158 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++Y+ DV R RG Q++LSRTHP + KLF EVPEI +G V++ +V+R+ G R K+AV Sbjct: 159 RAYVTDVSRGTRGAQIILSRTHPGLVRKLFEREVPEISSGDVEIVSVAREAGHRTKMAVR 218 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VL 301 S ++ GAC+G G RV+AV+TEL EKIDIV S D A F+ NAL PA V V V+ Sbjct: 219 SKVRGVNAKGACIGPMGQRVRAVMTELGGEKIDIVDHSEDPARFIANALSPARVAAVGVI 278 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D + IVP QLSLAIG+ GQN RLA++LTGW IDI + E ++ Sbjct: 279 DAEERTARAIVPDFQLSLAIGKEGQNARLAARLTGWKIDIHADAESGEITPGQGSQSDD 337 >gi|320094043|ref|ZP_08025865.1| transcription termination factor NusA [Actinomyces sp. oral taxon 178 str. F0338] gi|319979022|gb|EFW10543.1| transcription termination factor NusA [Actinomyces sp. oral taxon 178 str. F0338] Length = 342 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 205/363 (56%), Gaps = 26/363 (7%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+ + V EK + D ++ + +++ KA ++ G +S+ R+EI+ +TG +++ Sbjct: 1 MEIDMTALRMVETEKGVSLDTLVDAIEEALLKAYHNIPGAISEARIEIDKKTGRVTVMA- 59 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V+E E+ +P + P +FGR+A +A+ VI+ ++R+A Sbjct: 60 ---VDEDED------------GNPIGEFDDT------PKNFGRIAQATARSVIMARLRDA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVK--RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + R + +F + G+II+GTV+ R + + + + V+ E + E R GDR++ Sbjct: 99 DDQRVFGDFAGREGQIITGTVQQSRDGHLTRVQISDDFEAVLPDSEKVPGEAYRHGDRIR 158 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 +++ V R +RGP+V LSRTHP + LF EVPEI G+V+++A++R+ G R K+AV + Sbjct: 159 AFVVGVERTERGPRVTLSRTHPGLVECLFEREVPEIQQGLVRIRAIAREAGHRTKIAVAA 218 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + I+ GAC+G G+RV+AV+TEL EKIDIV +S D A FV NAL PA VT+VV+ Sbjct: 219 TREGINAKGACIGPVGARVRAVMTELGGEKIDIVDYSDDPARFVANALSPARVTRVVVHS 278 Query: 304 -DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D IVP QLSLAIG+ GQN RLA++LT + IDI ++ E Sbjct: 279 VDNRTATAIVPDFQLSLAIGKEGQNARLAARLTNFHIDIHSDTETGDEATASRVSTPDSV 338 Query: 363 MQA 365 Sbjct: 339 TSR 341 >gi|260889854|ref|ZP_05901117.1| transcription termination factor NusA [Leptotrichia hofstadii F0254] gi|260860460|gb|EEX74960.1| transcription termination factor NusA [Leptotrichia hofstadii F0254] Length = 386 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 130/385 (33%), Positives = 212/385 (55%), Gaps = 5/385 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M ++ L+ D + EK I ++ +L + ++ A + YG +++V IN +GD+ Sbjct: 2 MKGRDQKIFLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDV 61 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++ +VE VEN +ISL+ A +G ++ + F R A+Q+AKQ+++Q Sbjct: 62 KVYSQRLIVENVENPEEEISLQDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQ 121 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 KVRE E+ + +FK+ I+S V++ E GN+ VD+ + ++ E + R G Sbjct: 122 KVRECEKRNIFNKFKEIENSIVSANVRKTDEKGNLYVDINGLEAIVPAKELSPVDIFRQG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DR+K YI V + + +SR + + L +EVPEIY I++++ ++R+ GSR+K+ Sbjct: 182 DRIKIYIGAVEESTKFTKTFVSRKSEELLRGLLELEVPEIYEEIIEIRNIAREAGSRSKV 241 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV+S+D ++D GAC+G G R+Q ++ EL EKIDIV+W+ D FV NAL PA V V Sbjct: 242 AVYSNDENLDVKGACIGRNGMRIQNIIDELCGEKIDIVLWNEDITEFVKNALNPAEVLSV 301 Query: 300 VLDEDV----GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + E+ V+V + QLSLAIG++GQN RLA++L G IDI TE + ++ Sbjct: 302 EIIEEGEENMKVARVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEPAEIDEFEEYE 361 Query: 356 NERTQFFMQAINVDEIIAHLLVAEG 380 + V+E L E Sbjct: 362 EDTAFNDSFEDEVEESAFAGLHEED 386 >gi|218282331|ref|ZP_03488621.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989] gi|218216704|gb|EEC90242.1| hypothetical protein EUBIFOR_01203 [Eubacterium biforme DSM 3989] Length = 536 Score = 263 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 149/455 (32%), Positives = 238/455 (52%), Gaps = 20/455 (4%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +L + + ++ + +D+V + +++ KA R +++V ++ G I ++ Sbjct: 9 DLAKALQGIESDRQLSKDIVEDALKEALTKAYRRHIDI-PEVQVRVDIVDGTIHIYHERV 67 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ ++ L ++ +P+I IG +V + + DF R AV AK V+ QK+REAE+ Sbjct: 68 VVEEVEDDELEVQLDEIQNENPNIKIGDIVDEEVDFKDFDRAAVVLAKNVMKQKIREAEK 127 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 + Y E+ DKV E++ GT++ VE VIV++G + V+++ I E+ + GD + I Sbjct: 128 AQVYEEYCDKVDEMVLGTIETVEEKFVIVNIGKTLAVMKKSAQIPTEHYKEGDNILVVIT 187 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V +E +G QVL+SR P F+ +LF EVPEIYNGI+++KA++R+ G R K+AV+S + + Sbjct: 188 EVNKETKGAQVLVSRATPVFVRRLFEREVPEIYNGIIEIKAIAREAGERCKIAVYSHNEN 247 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDP+GAC+G RGSRVQ ++ EL EKIDI WS + + + NAL P+ V+ +E V Sbjct: 248 IDPIGACIGPRGSRVQTIIEELNGEKIDIFEWSDNISELIANALSPSTGVAVIPNETVKD 307 Query: 308 -IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF---- 362 + V+VP QLSLAIG+RG+N RLA +LT IDI +E E + Sbjct: 308 GLIVVVPDNQLSLAIGKRGKNARLAVKLTNHKIDIKSESEMQELGIDYMAISKKMQEEYE 367 Query: 363 --------------MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + +E + F +E E T E Sbjct: 368 EKKAKERAYKQQQKIDELKSNEAEIENIDVADFTYEDEEVDAVEEHAQDTLFEKENTVEE 427 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGI 443 + E L I +K+ V E + Sbjct: 428 KEVDEMEELARIAKQNRKEKTAADVKEYTSKFESM 462 >gi|282898605|ref|ZP_06306593.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281196473|gb|EFA71382.1| NusA antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 428 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 138/421 (32%), Positives = 215/421 (51%), Gaps = 32/421 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + + ++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKDLIEKISLERNLPRLAVQSSIREALLKGYERYRRAQNLERRQFDENYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P G V + P +FGR+A Sbjct: 69 GEGFRVLSTKTIVEEVTNGDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + + R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 DI + + + + Q + ++ E + D + E S+E Sbjct: 369 DIKDQAKYDYGAEDAKFAAVRANYQEESNQLDNQFEVIEEEYEDDPD---AGEDEFNSME 425 Query: 400 G 400 Sbjct: 426 E 426 >gi|68172039|ref|ZP_00545325.1| Transcription termination factor NusA, C-terminal duplication [Ehrlichia chaffeensis str. Sapulpa] gi|67998537|gb|EAM85305.1| Transcription termination factor NusA, C-terminal duplication [Ehrlichia chaffeensis str. Sapulpa] Length = 318 Score = 262 bits (670), Expect = 9e-68, Method: Composition-based stats. Identities = 148/331 (44%), Positives = 231/331 (69%), Gaps = 14/331 (4%) Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVK++I DVR+E GPQ+ LSR + FM +LF E+PEIY+GIV +KA++RDPGSR+K+A Sbjct: 1 RVKAHIEDVRKENSGPQIFLSRINKGFMEQLFKQEIPEIYDGIVTIKAIARDPGSRSKVA 60 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSD +IDPVGACVG RG R+Q +++EL EKID++++SP+ A F++NA+ PA V KV+ Sbjct: 61 VFSSDKNIDPVGACVGARGVRIQGIISELHGEKIDVILYSPELAKFIVNAIAPAEVLKVI 120 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED ++E+I+P+ QLSLAIGR GQN+RLAS+L GW I++I +E +S + K+ + ++ Sbjct: 121 IDEDKEKVELIIPENQLSLAIGRYGQNIRLASELVGWKINVIGDETESSRKAKELSAGSK 180 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F++ ++V+EII LL EGF +E++ +S+I++I+GF+EE A E++ RA +YL Sbjct: 181 IFVEGLDVEEIIGQLLFTEGFVSIEDIDQASVSDISAIDGFNEEIAEELKSRAADYLVRK 240 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 D +++ + L V +++ +P + +AL +NGI ++ED+AG D+ Sbjct: 241 DAEMKQILDNLSVDKDVTMLPFLRPSDIIALSKNGINSLEDIAGLCTDEFFDI------- 293 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGW 511 + + KDQV+S+I+ +R K+GW Sbjct: 294 -------IPDIALTKDQVDSVILESRKKIGW 317 >gi|119025371|ref|YP_909216.1| transcription elongation factor NusA [Bifidobacterium adolescentis ATCC 15703] gi|154486780|ref|ZP_02028187.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis L2-32] gi|118764955|dbj|BAF39134.1| N utilization substance homolog [Bifidobacterium adolescentis ATCC 15703] gi|154084643|gb|EDN83688.1| hypothetical protein BIFADO_00606 [Bifidobacterium adolescentis L2-32] Length = 350 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 188/324 (58%), Gaps = 15/324 (4%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80 ID + + + ++++++ A RVE++P G +++ E+ E Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPGEPTEDDPH-- 73 Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G+ Sbjct: 74 --------PAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGK 123 Query: 141 IISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP++ Sbjct: 124 LITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEI 183 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 ++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G Sbjct: 184 VVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPG 243 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQL 317 G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +QL Sbjct: 244 GARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNKTAIAFIHDDQL 303 Query: 318 SLAIGRRGQNVRLASQLTGWTIDI 341 SLAIG+ GQN RLA++LTGW I I Sbjct: 304 SLAIGKEGQNARLAAKLTGWKIGI 327 >gi|86605175|ref|YP_473938.1| transcription elongation factor NusA [Synechococcus sp. JA-3-3Ab] gi|86553717|gb|ABC98675.1| transcription termination factor NusA [Synechococcus sp. JA-3-3Ab] Length = 455 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 28/368 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTMS--DIRVEINPET 57 L ++ + ++ E+++ R V + + +++ K + + VE++ E Sbjct: 9 LAEMVEMISRERNLPRHAVTNALREALLKGYERYRKTIQRDVVFEEDHFRNFDVELDVEA 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 G + +VEEV + +ISL + P ++G V++ + P +FGR+A K Sbjct: 69 GGFRILATKTIVEEVRDPDHEISLYDVQQDYPEAEVGWEVTNDVTPQQAEFGRMAAIQTK 128 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF+D ++ V R E VI+ + + + + E Sbjct: 129 QVLAQKLRDQQRRLIQEEFRDLENTVLQARVLRTERQTVIMAVSSGFGQPEVEAELPKKE 188 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 ++ + P +K Y+ V +RGPQ+L+SR +V LF EVPEI IV++ A Sbjct: 189 QLASDRYTPNAVMKVYLKKVYEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVA 248 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSP Sbjct: 249 VAREANPPSRNVGPRTKIAVDTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSP 308 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D AT++ NAL PA V +V +D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 309 DPATYIANALSPAKVVEVRLVDPEIQQAHVLVTSDQLSLAIGKEGQNVRLAARLTGWKID 368 Query: 341 IITEEEDS 348 I E Sbjct: 369 IKEVESYR 376 >gi|86609687|ref|YP_478449.1| transcription elongation factor NusA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558229|gb|ABD03186.1| transcription termination factor NusA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 457 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 131/368 (35%), Positives = 205/368 (55%), Gaps = 28/368 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL---------YGTMS--DIRVEINPET 57 L ++ + ++ E+++ R VV + +++ K + + VE++ E Sbjct: 9 LAEMVEMISRERNLPRHVVTDALREALLKGYERYRKTIQRDVVFAEDHFRNFDVELDVEA 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 G + +VE+V+N +ISL + P ++G V+D + P +FGR+A K Sbjct: 69 GGFRVLATKAIVEQVQNPDHEISLYDVQQDYPEAEVGWEVTDDVTPQQAEFGRMAAIQTK 128 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF+D ++ V R E VI+ + + + + E Sbjct: 129 QVLAQKLRDQQRRLIQEEFRDLEKTVLQARVLRTERQTVIMSVSSGFGQPEVEAELPKKE 188 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 ++ + P +K Y+ V +RGPQ+L+SR +V LF EVPEI IV++ A Sbjct: 189 QLASDRYTPNAVMKVYLKKVYEGSRRGPQLLVSRADAGLVVNLFANEVPEIEEDIVRIVA 248 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR+EKID++ WSP Sbjct: 249 VAREANPPSRNVGPRTKIAVDTVERDVDPVGACIGARGSRIQAVVAELRNEKIDVIRWSP 308 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D AT++ NAL PA V +V +D ++ + V+V +QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 309 DPATYIANALSPAKVVEVRLVDPEIQQAHVLVNSDQLSLAIGKEGQNVRLAARLTGWKID 368 Query: 341 IITEEEDS 348 I E Sbjct: 369 IKEVESYR 376 >gi|75908091|ref|YP_322387.1| transcription elongation factor NusA [Anabaena variabilis ATCC 29413] gi|75701816|gb|ABA21492.1| NusA antitermination factor [Anabaena variabilis ATCC 29413] Length = 425 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 138/412 (33%), Positives = 216/412 (52%), Gaps = 38/412 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + ++++ E+++ R V + + +++ K R + + VE++ + Sbjct: 9 LKDLIESISRERNLPRLAVQAAIREALLKGYERYRRAQNIERKQFDEDYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P +G V + P +FGR+A Sbjct: 69 EEGFRVLSTKSIVEEVNNSDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + ++ + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLESTVLQARVLRFERQSVILAVSSTFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPETRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSI---------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFA 382 DI + + R K E + ++ +E L E F Sbjct: 369 DIKDKAKYDQAAEDAKFVAARAKYQLEEDDIESEELDYEENQEGELEDESFD 420 >gi|227497551|ref|ZP_03927779.1| transcription termination factor NusA [Actinomyces urogenitalis DSM 15434] gi|226833005|gb|EEH65388.1| transcription termination factor NusA [Actinomyces urogenitalis DSM 15434] Length = 348 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 126/334 (37%), Positives = 188/334 (56%), Gaps = 24/334 (7%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 A E ID + +L + D+I A + G + VEI+ +G +++ V+E + T Sbjct: 12 AQELGIDLEDLLPAIEDAILGAYTKVPGAIRGAHVEIDRRSGHMAVLAPE--VDEEDQPT 69 Query: 77 CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKD 136 + P DFGR+A +A+ VI+Q++++ FKD Sbjct: 70 GEF-------------------FDDTPDDFGRIAQATARSVIVQRIQDRRDFEVLGAFKD 110 Query: 137 KVGEIISGTVKR-VEYGNVIVDL-GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K GE+ISGTV++ + V V L +G++ E + E R GDR+++Y+ +V R + Sbjct: 111 KAGELISGTVEQGRDPRIVYVRLDEEHEGIMPPHEQVPGERYRHGDRIRAYVTEVSRGPK 170 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G Q++LSRTHP + KLF EVPE+ +G V++ AV+R+ G R K+AV S + GAC Sbjct: 171 GAQIILSRTHPGLVRKLFEREVPELVSGDVEIMAVAREAGHRTKMAVRSRQRGLGAKGAC 230 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVP 313 +G G RV+AV+ EL EKIDIV +S + A F+ NAL PA V+ V + + + +VP Sbjct: 231 IGPMGQRVRAVMAELGGEKIDIVDYSDEPARFIANALSPARVSSVHIQSMEDQTAKAVVP 290 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 QLSLAIG+ GQN RLA++LTGW IDI + E Sbjct: 291 DFQLSLAIGKEGQNARLAARLTGWKIDIHADAET 324 >gi|332665272|ref|YP_004448060.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100] gi|332334086|gb|AEE51187.1| NusA antitermination factor [Haliscomenobacter hydrossis DSM 1100] Length = 416 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 138/407 (33%), Positives = 224/407 (55%), Gaps = 10/407 (2%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTC 77 K+IDR + V+ D + + +G+ + V +N + GD+ L+R+ E+V + V + Sbjct: 14 KNIDRPTMARVLEDVFRTLIKKKFGSDDNFNVIVNTQNGDLELWRVREIVPDGEVTDDRA 73 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 QIS+ A D +IG + L DFGR A+ +A+Q +I ++ E E+D Y + ++ Sbjct: 74 QISISEALAIDEDYEIGEECYERLQLEDFGRRAIMAARQTLISRIMELEKDEVYKSYSER 133 Query: 138 VGEIISGTVKRVEYGNVIV--DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 VGE+I G + ++ +V D ++ V+ R ETI + R GD VK I V Sbjct: 134 VGEVIVGEIHQILKKEFLVVDDATGNELVLPRTETIKADFFRKGDMVKGIIRRVELRNNT 193 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 P V++SRT F+ KL EVPEI +G++ +K + R PG RAK+AV S D IDPVGACV Sbjct: 194 PIVVMSRTDNAFLEKLLEAEVPEIEDGLISIKKIVRLPGERAKVAVESYDDRIDPVGACV 253 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKE 315 GM+GSR+ +V EL +E IDIV ++ +++ ++ AL PA VT++ L+ + +V + E Sbjct: 254 GMKGSRIHGIVRELNNENIDIVNYTNNASLYIQRALTPAKVTRIELNTETNHADVYLEPE 313 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375 Q+SLAIG+ G N++LASQLTG+ ID+ + + +++ I Sbjct: 314 QVSLAIGKSGTNIKLASQLTGYEIDVYRNNTEEYE-----IDDVDLDEFGDEIEDWIIDA 368 Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVE-IQGRAREYLEGID 421 L A G + + +E+ +EET + ++ + E+ EG + Sbjct: 369 LQAIGCDTARSVLNLSKAELLRRTDLEEETIDDVLRVLSAEFEEGEN 415 >gi|254431817|ref|ZP_05045520.1| transcription termination factor NusA [Cyanobium sp. PCC 7001] gi|197626270|gb|EDY38829.1| transcription termination factor NusA [Cyanobium sp. PCC 7001] Length = 476 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 142/462 (30%), Positives = 219/462 (47%), Gaps = 38/462 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V+++ + Sbjct: 12 LIEDISEEKKLPPAVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVQLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L + IG V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALAEVQQVADDAQIGDTVVLDVTPEKDDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D ++S V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLSARVVRFERQSVIMAVSSGPGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R +K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANTTLKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP Sbjct: 252 VAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEAVRLVDPDGHHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSI-------NRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 I E Q + + AE A + EL + Sbjct: 372 IKNAVEYDQASEDAVVAEQIAIRQEEEALHAEAEARLAAEQAARAEEDARLRELYPLPED 431 Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 E E +E A E Q + +++ +G + Sbjct: 432 EEGYQEDGYQEEASEPQAYDEPAMAEASAPEEEQAELVGSED 473 >gi|212716581|ref|ZP_03324709.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM 16992] gi|225351012|ref|ZP_03742035.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660285|gb|EEB20860.1| hypothetical protein BIFCAT_01509 [Bifidobacterium catenulatum DSM 16992] gi|225158468|gb|EEG71710.1| hypothetical protein BIFPSEUDO_02593 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 350 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 118/344 (34%), Positives = 197/344 (57%), Gaps = 17/344 (4%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV-VEEVENYTCQI 79 ID + + + ++++++ A RVE++P G +++ E+ VE E+ Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARVELDPRAGSFTVWAQDEIPVEPTEDNPH-- 73 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G Sbjct: 74 ---------PAPTLGEEYDD--TPRDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKG 122 Query: 140 EIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 ++I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP+ Sbjct: 123 KLITGIVQQDVKDTSNVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPE 182 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 +++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G Sbjct: 183 IVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGP 242 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQ 316 G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +Q Sbjct: 243 GGARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNQTAIAFIHDDQ 302 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LSLAIG+ GQN RLA++LTGW I I + E + + ++ Sbjct: 303 LSLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMAEAQASTSE 346 >gi|83319641|ref|YP_424320.1| transcription elongation factor NusA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283527|gb|ABC01459.1| transcription elongation protein nusA, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 558 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 229/436 (52%), Gaps = 6/436 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123 L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 EAER R Y +F GE++ V + N ++D+ + + +++TI+ E + + + Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++K VSR+PG R+K+AV Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P V + Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKI 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE--DSINRQKDFNERTQ 360 D +++VP QLSLAIG++G +L + L I+I + + T+ Sbjct: 303 GDE--YDIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFSYSIALKENMDILWNGDTTK 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 ++ + E + +K E I+ + ++ Sbjct: 361 QEVETNSYIPKTKISKKEEKIVNTIIKKPIKKKEENIIDVDALIAFQAEVEQEQDAKIYE 420 Query: 421 DITLQKKIRELGVSEE 436 +I + ++ + Sbjct: 421 EINQELADDKVQPDSD 436 >gi|88802100|ref|ZP_01117628.1| transcription elongation factor NusA [Polaribacter irgensii 23-P] gi|88782758|gb|EAR13935.1| transcription elongation factor NusA [Polaribacter irgensii 23-P] Length = 418 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 131/426 (30%), Positives = 228/426 (53%), Gaps = 21/426 (4%) Query: 7 LELLQIADAVAY---EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 +E + + D+ + KSIDR ++S++ + + + +G+ + + INP+ GD+ ++ Sbjct: 1 MENIALIDSFSEFKDNKSIDRVTLMSILEEVFRATLKRKFGSDDNFDIIINPDKGDLEIW 60 Query: 64 RLLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 R VV + E+ +I L AR +P +IG VS+ + +D GR A+ + +Q +I K Sbjct: 61 RNRVVVADGFSEDDNEEIELAEARLIEPDFEIGEDVSEEVKLIDLGRRAILALRQNLISK 120 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGD 180 + E + + FK+ GE+ S V + + +I+ D ++ V+ + E I + R GD Sbjct: 121 IYEHDSTNIFKHFKELEGELYSAEVHHIRHNAIILLDDDGNEIVLPKSEQIRSDFFRKGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V+ I V P ++LSRT P F+ KLF E+PE+++G++ V+ V+R PG +AK+A Sbjct: 181 SVRGVIKTVELRGNKPAIILSRTAPAFLNKLFEQEIPEVFDGLITVERVARIPGEKAKVA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S D IDPVGACVG++GSR+ +V EL +E ID++ ++ + F+ AL PA VT + Sbjct: 241 VDSYDDRIDPVGACVGVKGSRIHGIVRELGNENIDVINYTKNEQLFISRALSPAKVTSME 300 Query: 301 L--DEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 + E+ R+ V++ E++S AIGR G N+RLAS+LTG+ ID+ E + + + Sbjct: 301 IEMYEEERNGKKGRVSVLLRPEEVSKAIGRGGVNIRLASELTGYEIDVKREGLEEEDVEL 360 Query: 354 DFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRA 413 ++ + G + + E+ +EET +++Q Sbjct: 361 TEFGD--------EIEAWVIKEFKNIGLDTARSVLEASVEELVKRTDLEEETILDVQRIL 412 Query: 414 REYLEG 419 +E E Sbjct: 413 KEEFEQ 418 >gi|261883881|ref|ZP_06007920.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 307 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 159/271 (58%), Positives = 205/271 (75%) Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIV 312 ACVGMRGSRVQAVV EL+ EKIDI+ WSPD+A+F++NAL+PA V KVVLDED RIEV+V Sbjct: 1 ACVGMRGSRVQAVVFELQGEKIDIIPWSPDAASFIVNALQPAEVAKVVLDEDAERIEVVV 60 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEII 372 P +QLSLAIGRRGQNVRLASQLTGW IDI+TE+E+S RQK+F ER+ FM+A+NVDE++ Sbjct: 61 PNDQLSLAIGRRGQNVRLASQLTGWDIDILTEDEESERRQKEFAERSNLFMEALNVDEMV 120 Query: 373 AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG 432 +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ + +ELG Sbjct: 121 GQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEAEQDARRKELG 180 Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 V++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ G L+ Sbjct: 181 VADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTINHSGVLTPFD 240 Query: 493 TPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 + E M++ AR K WI ++++A Sbjct: 241 LSRVDAEHMVLAARLKACWITEQELAAASGD 271 >gi|210634027|ref|ZP_03297945.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279] gi|210158971|gb|EEA89942.1| hypothetical protein COLSTE_01863 [Collinsella stercoris DSM 13279] Length = 427 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 204/395 (51%), Gaps = 37/395 (9%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M A+ +++ + EK ID+ +L + ++ + + +V I+ +G I Sbjct: 1 MADADMT-MMEALMLLCQEKHIDQLYLLDRLEAALAETYAKVLKLDWGAKVTIDRASGKI 59 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 ++R LE +++ + + + P D R+A Q+AK I Sbjct: 60 YVYR-LEPIDDSMDEEGNFT--------------EYEEIDVTPKDVSRLAAQTAKAEINA 104 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDE 169 VR A R++ Y EF +VG++I+GTV + IV + + + R+E Sbjct: 105 IVRNAAREQIYEEFSGRVGDLINGTVLQSTPDFTIVKIRDGVEAELPHFDQRRYPDERNE 164 Query: 170 TISRENLRPGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEI 219 + E +K+ I DVR P +++SRTH + M +LF EVPE+ Sbjct: 165 RPNGERYLHNQHLKAVIVDVRDPNSTLPPVRGEHSRPPIVISRTHAELMRRLFEQEVPEV 224 Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 Y G V++K+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W Sbjct: 225 YEGTVELKSIAREPGMRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILW 284 Query: 280 SPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D A +V NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW I Sbjct: 285 DEDPAVYVANALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHI 344 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 DI +E + + ++ D Sbjct: 345 DIKSETLAADILKNVPLAPEPAVEDLLDEDTADFE 379 >gi|306823536|ref|ZP_07456911.1| transcription termination factor NusA [Bifidobacterium dentium ATCC 27679] gi|309802869|ref|ZP_07696970.1| transcription termination factor NusA [Bifidobacterium dentium JCVIHMP022] gi|304553243|gb|EFM41155.1| transcription termination factor NusA [Bifidobacterium dentium ATCC 27679] gi|308220336|gb|EFO76647.1| transcription termination factor NusA [Bifidobacterium dentium JCVIHMP022] Length = 346 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 195/343 (56%), Gaps = 15/343 (4%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80 ID + + + ++++++ A R+E++P G +++ E+ E Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGEPTEEDPH-- 73 Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G+ Sbjct: 74 --------PAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGK 123 Query: 141 IISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP++ Sbjct: 124 LITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEI 183 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 ++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G Sbjct: 184 VVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPG 243 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQL 317 G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +QL Sbjct: 244 GARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAFIHDDQL 303 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 SLAIG+ GQN RLA++LTGW I I + E + Q+ E + Sbjct: 304 SLAIGKEGQNARLAAKLTGWKIGIESAEAHARKMQESAGESAE 346 >gi|213964507|ref|ZP_03392707.1| transcription termination factor NusA [Corynebacterium amycolatum SK46] gi|213952700|gb|EEB64082.1| transcription termination factor NusA [Corynebacterium amycolatum SK46] Length = 328 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 129/346 (37%), Positives = 198/346 (57%), Gaps = 31/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L + EK I D +L ++A +++++ R+ RVEI+ ETGD+ +F Sbjct: 5 LAALRTLEKEKGIPVDEMLGLVARALRESYRNTTAPAQYARVEIDRETGDVIVF------ 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A++RD ++ D P DF R A + +Q I+ ++R+AE D+ Sbjct: 59 --------------AQERDDEGNLISEWDD--TPEDFERTAAFAVRQTILSRLRDAESDK 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 E+ D ++ISG V+R Y N V+V +G DG++ E + E L+ GDR Sbjct: 103 VLDEYADLSNQVISGVVQRDVYANEKGIVVVHIGSEANGRDGILMPAEQLPGEELKHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + RG + LSRTHP+ + KLF +E+PE+ +G V++ +++R+ G R K+AV Sbjct: 163 IKCYVVGVNKTPRGVAIHLSRTHPELIRKLFELEIPEVADGAVELISIAREAGHRTKVAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + ++ GAC+G RG RV +++ EL+ EKIDI+ + D A FV N+L PA V V + Sbjct: 223 RPTVKGLNAKGACIGPRGQRVSSIMNELKGEKIDIIDYDEDPAKFVGNSLAPAKVVSVKI 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 D D R V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 283 LDMDERRAHVVVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDAE 328 >gi|171741240|ref|ZP_02917047.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC 27678] gi|283455398|ref|YP_003359962.1| N utilization substance protein A [Bifidobacterium dentium Bd1] gi|171276854|gb|EDT44515.1| hypothetical protein BIFDEN_00314 [Bifidobacterium dentium ATCC 27678] gi|283102032|gb|ADB09138.1| nusA N utilization substance protein A [Bifidobacterium dentium Bd1] Length = 346 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 195/343 (56%), Gaps = 15/343 (4%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQIS 80 ID + + + ++++++ A R+E++P G +++ E+ E Sbjct: 16 GIDPETLDAALSEALRLAYLKTPHAAKHARIELDPRAGSFTVWAQDEIPGEPTEEDPH-- 73 Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 P+ +G D P DFGR+A +A+QVI Q R+AE D+ + F + G+ Sbjct: 74 --------PAPTLGEEYDD--TPHDFGRLAAATARQVISQLFRKAEDDKVFGAFSGQKGK 123 Query: 141 IISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 +I+G V++ + NV V +G+ + ++ R E + E R G+R++ Y+ +V R +GP++ Sbjct: 124 LITGIVQQDAKDTANVHVAVGDVEALLPRREQVPGERYRHGERIRVYVVNVARGLKGPEI 183 Query: 199 LLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMR 258 ++SR+HP+ + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P GA +G Sbjct: 184 VVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNPKGALIGPG 243 Query: 259 GSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQL 317 G+RV+AV+ L EKIDIV WS D A FV AL PA+ T V + E + +QL Sbjct: 244 GARVRAVMENLGPEKIDIVDWSADPAKFVAAALSPAVATGVQVISEKNNTAIAFIHDDQL 303 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 SLAIG+ GQN RLA++LTGW I I + E + Q+ E + Sbjct: 304 SLAIGKEGQNARLAAKLTGWKIGIESAEAHAKKMQESAGESAE 346 >gi|257784634|ref|YP_003179851.1| NusA antitermination factor [Atopobium parvulum DSM 20469] gi|257473141|gb|ACV51260.1| NusA antitermination factor [Atopobium parvulum DSM 20469] Length = 413 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 194/362 (53%), Gaps = 42/362 (11%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ + EK ID +L + S+ K+ + RV I+ TG + ++ Sbjct: 4 EMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATGRVYVY---- 59 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVRE 124 ++ +P + G + P D R+A Q AK I VR Sbjct: 60 --------------ELVPKGEPDEETGEYTEFDEVDVTPPDTSRIAAQHAKAEIKTLVRN 105 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISR 173 A R + Y EF+ +VG+II+GTV + I+ + + + RDE + Sbjct: 106 AARAQIYDEFRGRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDQRRFPDERDERPAG 165 Query: 174 ENLRPGDRVKSYIYDVRREQ----------RGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 E R+K+ I DVR + P +++SRTHP + +LF +EVPE+Y+G+ Sbjct: 166 ERYLHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYDGV 225 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 V +++++R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V W D+ Sbjct: 226 VSIRSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDA 285 Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A V +AL PA V++V++D G VIVP +QLSLAIG+ GQN RLA++LTG IDI Sbjct: 286 ARCVASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKN 345 Query: 344 EE 345 E Sbjct: 346 ES 347 >gi|216264195|ref|ZP_03436187.1| transcription elongation protein NusA [Borrelia burgdorferi 156a] gi|221217568|ref|ZP_03589037.1| transcription elongation protein NusA [Borrelia burgdorferi 72a] gi|225550297|ref|ZP_03771256.1| transcription elongation protein NusA [Borrelia burgdorferi 118a] gi|215980668|gb|EEC21475.1| transcription elongation protein NusA [Borrelia burgdorferi 156a] gi|221192514|gb|EEE18732.1| transcription elongation protein NusA [Borrelia burgdorferi 72a] gi|225369165|gb|EEG98619.1| transcription elongation protein NusA [Borrelia burgdorferi 118a] Length = 482 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 124/395 (31%), Positives = 232/395 (58%), Gaps = 7/395 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + V+ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFVKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ E F ++ +++ +K+ + + I +E +I Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDI 400 >gi|302335788|ref|YP_003800995.1| transcription termination factor NusA [Olsenella uli DSM 7084] gi|301319628|gb|ADK68115.1| transcription termination factor NusA [Olsenella uli DSM 7084] Length = 414 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 125/359 (34%), Positives = 191/359 (53%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+++ A+ EK ID ++ + S+ K+ + RV I+ TG ++ Sbjct: 4 EMMEALMALCQEKHIDELYLIDRLEQSLAKSYAEILHLDFGARVTIDRATG--RVYVYKL 61 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V E N D + + + P D R+A Q AK I + VR + R Sbjct: 62 VPEGDIN-------------DETGEFDNFEEVDVTPKDASRIAAQHAKSEIAEIVRNSAR 108 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 + + EF +VG+II+GTV + + + + + R+E E Sbjct: 109 QQIFEEFSQRVGDIITGTVLQTTPDFAFIKIREGVEAELPYFDQRRYPDERNERPVGERY 168 Query: 177 RPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 R+++ I DVR +++SRTHP + +LF +EVPE+Y G+V+V Sbjct: 169 IHNQRIRAIIVDVRDPNSNQPPIRGERQRPSIVVSRTHPDLIRRLFELEVPEVYEGVVEV 228 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 ++V+R+ G R+K+AV S D +DPVGACVG +GSRV+ VV+ELR E++D+V+WS D + Sbjct: 229 RSVAREAGVRSKVAVSSLDDRLDPVGACVGPKGSRVRTVVSELRGERVDVVLWSDDPSRC 288 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA V++V++D + VIVP +QLSLAIG+ GQN RLA++LTG IDI E Sbjct: 289 VANALSPARVSRVIVDPENNYATVIVPDDQLSLAIGKEGQNARLAARLTGMHIDIKNES 347 >gi|255326386|ref|ZP_05367470.1| transcription termination factor NusA [Rothia mucilaginosa ATCC 25296] gi|255296603|gb|EET75936.1| transcription termination factor NusA [Rothia mucilaginosa ATCC 25296] Length = 365 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 24/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+A ++S+ + + +++ +++ A G + R I+ TG+ + Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G ++SG +++ ++ VDLG + V+ +E + E G R+++Y+ + Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGTVEAVLPSNEQVPGEKYPHGSRLRAYLVE 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR +GP +++SR+HP +++LF EVPEI G+V + +++R+ G R+K+AV + + +I Sbjct: 167 ARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVSINSIAREAGHRSKIAVSAKNPTI 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D ATF+ AL PA VT+V++ + Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREYS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +VP +QLSLAIGR GQN RLA++LTGW IDI++E + + R ++ Sbjct: 287 ARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEE 333 >gi|308235445|ref|ZP_07666182.1| transcription elongation factor NusA [Gardnerella vaginalis ATCC 14018] gi|311114226|ref|YP_003985447.1| transcription termination factor NusA [Gardnerella vaginalis ATCC 14019] gi|310945720|gb|ADP38424.1| transcription termination factor NusA [Gardnerella vaginalis ATCC 14019] Length = 349 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 119/348 (34%), Positives = 197/348 (56%), Gaps = 19/348 (5%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV--VEEV 72 +A ++ I+ + + +A++++ A RVE++ G +++ E+ V Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTSHPARHARVELDERAGSFTVWAKDEIPGVPTE 69 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 +N P+ +G D P DFGR+A +A+QVI Q R+ E DR + Sbjct: 70 DNPH------------PAPTLGEEYDD--TPRDFGRLAAATARQVITQLFRKVEDDRVFG 115 Query: 133 EFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 F + G++I+G V++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V Sbjct: 116 AFSGQKGKLINGVVQQDSKDPSNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVA 175 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 R RGP++++SR+HP + +LF EVPE+ +G V + A++R+ G+R K+AV ++ ++P Sbjct: 176 RGLRGPEIVVSRSHPDLVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTEGVNP 235 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIE 309 GA +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E Sbjct: 236 KGALIGPGGSRVRAVMENLGPEKIDIVDWSEDPAKFVAAALSPATATQVHVVSEKSQTAV 295 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + QLSLAIG+ GQN RLA++LTGW I I + EE + +++ + Sbjct: 296 AFIHDSQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKQEEMNAD 343 >gi|224534126|ref|ZP_03674706.1| transcription elongation protein NusA [Borrelia spielmanii A14S] gi|224514551|gb|EEF84865.1| transcription elongation protein NusA [Borrelia spielmanii A14S] Length = 482 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 124/396 (31%), Positives = 234/396 (59%), Gaps = 7/396 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +IS K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SFFEISEKDISREN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ +AL P+ + ++DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDALTPSKIEHVYIIDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ E F ++ +++ +K+ + + I +E +I Sbjct: 365 DVVEEEQFEEISKISDLKLLDSSVISNLSKEGLDDI 400 >gi|294790399|ref|ZP_06755557.1| transcription termination factor NusA [Scardovia inopinata F0304] gi|294458296|gb|EFG26649.1| transcription termination factor NusA [Scardovia inopinata F0304] Length = 372 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 187/341 (54%), Gaps = 15/341 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ I+ + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 11 LAAEQGIEPERLDAALSEALRLAYLKTPHAARHARVELDERAGSFTVWAQKEIPQEPTEE 70 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 P +G D P FGR A A+QVI R+ D + F Sbjct: 71 DPH----------PKPVLGEEYDD--TPEGFGRQAAYIARQVITALFRKVADDNIFGAFA 118 Query: 136 DKVGEIISGTVKR--VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G+RV+ Y+ V + Sbjct: 119 GQKGKLITGVVQQDSNDRGNLHIAVGDVEALLPRREQVPGERFRHGERVRVYVVSVNKGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ G VQ+ +++R+ G R K+AV ++ ++P G+ Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELVTGAVQIMSIAREAGERTKIAVRANAQGVNPKGS 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIV 312 +G G RV+AV+ L +EKIDIV WS D A FV AL PA KV + E ++ Sbjct: 239 LIGPAGQRVRAVMENLGNEKIDIVDWSEDPAKFVSAALSPAHAVKVSVVSERNKTAVALI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 +QLSLAIG+ GQN RLA++LTGW I I + E ++ Sbjct: 299 HDDQLSLAIGKEGQNARLAAKLTGWKIGIESYEASQRKDEQ 339 >gi|254226551|ref|ZP_04920134.1| Transcription elongation factor [Vibrio cholerae V51] gi|125620955|gb|EAZ49306.1| Transcription elongation factor [Vibrio cholerae V51] Length = 271 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 114/287 (39%), Positives = 176/287 (61%), Gaps = 18/287 (6%) Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 +RDPGSRAK+AV ++D IDPVGACVGMRG+RVQAV EL E+IDIV+W + A FVI Sbjct: 2 AARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVI 61 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 NA+ PA V +++DED +++ V + L+ AIGR GQNVRLASQLTGW ++++T + Sbjct: 62 NAMAPADVASIIMDEDAHSMDIAVEADNLAQAIGRNGQNVRLASQLTGWELNVMTVADLQ 121 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 Q++ + FM+ +++++ A LLV EGF+ +EE+A V ++E+ ++G DE+ A E Sbjct: 122 KKHQEESMASIENFMKYLDIEQDFAELLVEEGFSTLEEIAYVPMNELLDVDGMDEDLADE 181 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 ++ RA+E L I + ++ L +E+L ++ G++ + L G+ T+EDLA VD Sbjct: 182 LRSRAKEALTTIALAKEESFEGLEPAEDLLALAGLERDMAFKLAAKGVATLEDLADQGVD 241 Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 DL G G + + +I+ AR + W ++ Sbjct: 242 DLEGIE-----------------GLTEQRAGELIMAAR-NICWFGED 270 >gi|283458507|ref|YP_003363135.1| transcription elongation factor [Rothia mucilaginosa DY-18] gi|283134550|dbj|BAI65315.1| transcription elongation factor [Rothia mucilaginosa DY-18] Length = 365 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 24/347 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+A ++S+ + + +++ +++ A G + R I+ TG+ + Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 A + D D P +FGR+A + +QV+ Q++R+AE Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 130 QYLEFKDKVGEIISGTVKRVEYGNVI-VDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EFKD+ G ++SG +++ ++ VDLG + V+ +E + E G R+++Y+ + Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGTVEAVLPSNEQVPGEKYPHGSRLRAYLVE 166 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 RR +GP +++SR+HP +++LF EVPEI G+V + +++R+ G R+K+AV + + +I Sbjct: 167 ARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVAINSIAREAGHRSKIAVSAKNPTI 226 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGR 307 + GAC+G G+RV+AV EL DEKIDIV +S D ATF+ AL PA VT+V++ + Sbjct: 227 NAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREYS 286 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +VP +QLSLAIGR GQN RLA++LTGW IDI++E + + R ++ Sbjct: 287 ARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEE 333 >gi|294786395|ref|ZP_06751649.1| transcription termination factor NusA [Parascardovia denticolens F0305] gi|294485228|gb|EFG32862.1| transcription termination factor NusA [Parascardovia denticolens F0305] Length = 372 Score = 259 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 115/329 (34%), Positives = 188/329 (57%), Gaps = 15/329 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ ID + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 11 LAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIPQEPT-- 68 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A D P +G D P DFGR A A+QVI R+A D+ + F Sbjct: 69 --------AEDPHPRPALGEEYDD--TPEDFGRQAAYIARQVITALFRKAADDKIFGAFA 118 Query: 136 DKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ V R Sbjct: 119 GQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVVSVNRGL 178 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ ++P GA Sbjct: 179 KGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQGVNPKGA 238 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIV 312 +G G RV+AV+ L DEKIDIV WS D A FV AL PA KV + E ++ Sbjct: 239 LIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNKTTLALI 298 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +Q+SLAIG+ GQN RLA++LTGW I I Sbjct: 299 HDDQMSLAIGKEGQNARLAAKLTGWKIAI 327 >gi|51599052|ref|YP_073240.1| transcription elongation factor NusA [Borrelia garinii PBi] gi|51573623|gb|AAU07648.1| N-utilization substance protein A [Borrelia garinii PBi] Length = 482 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 129/426 (30%), Positives = 239/426 (56%), Gaps = 16/426 (3%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V + DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLE---------GIDITL 424 ++ E F D+ +++ +K+ + + I +E +I + E + Sbjct: 365 DVVEEEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEI 424 Query: 425 QKKIRE 430 K ++E Sbjct: 425 NKILKE 430 >gi|50365108|ref|YP_053533.1| transcription elongation factor NusA [Mesoplasma florum L1] gi|50363664|gb|AAT75649.1| transcription terminator [Mesoplasma florum L1] Length = 471 Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats. Identities = 133/451 (29%), Positives = 223/451 (49%), Gaps = 15/451 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ++L+ ++ EKSI ++V + + + QKA + T + ++ EIN +TG I+LF+ Sbjct: 3 NGAQILEALASLESEKSISKEVAIEGIKEGFQKAYERFFDTEAVVKTEINEQTGSINLFQ 62 Query: 65 LLEVV---EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP-MDFGRVAVQSAKQVIIQ 120 L VV +E+E+ +I L+ A + +G V P+ +F RVAV +Q+ Q Sbjct: 63 ELMVVATDDEIEDDWLEIVLEDALKINKEAKVGDKVYKPIDFDEEFSRVAVGQVRQIFQQ 122 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRP 178 K+R ER Y +F GEI+ G + + I+D+ + +TI+RE Sbjct: 123 KIRATERAMIYEKFIQLEGEIVRGKIVGMNDQGTSYILDIDGVHTSLWNQKTINREEFVV 182 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 + V + +V RE + Q+++SR P+F+ KL EV E+ G+V+V +VSR+PG RAK Sbjct: 183 NELVDVLLEEVARENKYSQLVVSRVAPKFLAKLVEKEVSEVAQGLVEVMSVSREPGKRAK 242 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV S D ++P+GA VG++GSR+ + ELR EKID+V W + F+INA+ P V Sbjct: 243 IAVLSHDEDVEPIGAIVGVKGSRINNISKELRGEKIDVVKWDDEIIPFIINAMAPVKVIS 302 Query: 299 VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD--FN 356 ++E G +++VP +QLSLAIG+ G +L + L I+I + E + Sbjct: 303 --VNEVEGEFDIVVPNQQLSLAIGKGGMAAKLVANLLKRRINIYSLENAITDNMDVLWNG 360 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADV----EELACVKISEIASIEGFDEETAVEIQGR 412 T+ + + + + + + + F E E + Sbjct: 361 NITEEEVNNPDFINEVNKRKINSQTVKPEYHKNSFRNAQANNEEELMSFQAE-VEEEYNQ 419 Query: 413 AREYLEGIDITLQKKIRELGVSEELCSIPGI 443 E +E + +Q+ + EL S I Sbjct: 420 VEELIEETNAVVQENKDLESIQSELESFNDI 450 >gi|225551696|ref|ZP_03772640.1| transcription elongation protein NusA [Borrelia sp. SV1] gi|225371723|gb|EEH01149.1| transcription elongation protein NusA [Borrelia sp. SV1] Length = 482 Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats. Identities = 130/444 (29%), Positives = 239/444 (53%), Gaps = 23/444 (5%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 FLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M + +++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFDKVMQDVVEE 369 Query: 375 LLVAE----------GFADVEELACVKISEIASIEGFDE----------ETAVEIQGRAR 414 E + + +L+ + +I + DE E EI + Sbjct: 370 EQFEEISKISDLKLLDPSVISDLSKEGLDDINNFLQADEGLLFNLGVSYEKQEEINKILK 429 Query: 415 EYLEGIDITLQKKIRELGVSEELC 438 E + I + I ++ EEL Sbjct: 430 EGMIIIANDNDESIEKVEEDEELL 453 >gi|229815167|ref|ZP_04445504.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM 13280] gi|229809397|gb|EEP45162.1| hypothetical protein COLINT_02213 [Collinsella intestinalis DSM 13280] Length = 426 Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 196/358 (54%), Gaps = 36/358 (10%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +++ + EK ID+ +L + ++ + + +V I+ TG I ++R LE Sbjct: 8 MMEALMELCQEKHIDQLYLLDRLEAALAETYARVLKLDWGAKVTIDRTTGKIYVYR-LEP 66 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 +++ + + + P D R+A Q+AK I VR A R+ Sbjct: 67 IDDSMDEEGNFT--------------EYEEIDVTPKDVSRLAAQTAKAEINAIVRNAARE 112 Query: 129 RQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENLR 177 + Y EF +VG++I+GTV + IV + + + R+E + E Sbjct: 113 QIYEEFSGRVGDLINGTVLQSTPDFTIVKIREGVEAELPHFDQRRYPDERNERPAGERYL 172 Query: 178 PGDRVKSYIYDVRREQR----------GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 +K+ I DVR P +++SRTH + M +LF EVPE+Y G V++K Sbjct: 173 HNQHLKAVIIDVRDPNSTLPPVRGEHSRPPIVISRTHSELMRRLFEQEVPEVYEGTVELK 232 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 +++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A +V Sbjct: 233 SIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDEDPAVYV 292 Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 NAL PA VT+V++D + VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 293 ANALSPAKVTRVLIDPEKNYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 350 >gi|313665234|ref|YP_004047105.1| transcription termination factor NusA [Mycoplasma leachii PG50] gi|312949351|gb|ADR23947.1| transcription termination factor NusA [Mycoplasma leachii PG50] Length = 558 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 242/461 (52%), Gaps = 17/461 (3%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN +TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQ 62 Query: 65 LLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQKVR 123 L+VVEE+++ +I+L+ A+ ++P+ IG ++ P+ +F R+ V +Q+ QK+R Sbjct: 63 ELKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIR 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 EAER R Y +F GE++ V + N ++D+ + + +++TI+ E + + + Sbjct: 123 EAERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEII 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+AV Sbjct: 183 DVYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVAVV 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + + +++P+GA +G+ G+R+ + L+ EKID++ WS D T++INA+ P V + Sbjct: 243 THNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKI 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D +++VP QLSLAIG++G +L + L I+I + ++ + Sbjct: 303 GDE--YDIVVPDSQLSLAIGKQGITAKLIASLLKTKINIFS-----------YSIALKEN 349 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M + + + + +++ + + ++ + E + Sbjct: 350 MDILWNGDTTKQEVKTNSYIPKTKISKKEEKIVNTVVKKPVKRREENIIDVDALMAFQAE 409 Query: 423 TLQKKIRE--LGVSEELCSIPGIDSKIKVALGENGIKTMED 461 Q++ + S++L + + K N IK +D Sbjct: 410 VEQEQDAKIYEEDSQDLVNDKDQINSNKAKTIINVIKDKDD 450 >gi|331703354|ref|YP_004400041.1| transcriptional terminator [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801909|emb|CBW54062.1| Transcriptional terminator [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 584 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 124/455 (27%), Positives = 230/455 (50%), Gaps = 7/455 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V + N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V + Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D +++VP QLSLAIG++G +L + L I+I + Sbjct: 303 KIGDE--YDIVVPDSQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + + V + + E + I +A E Sbjct: 361 TIQEVETNTYTPKTKATKKEEKPVITTTKKPVKQTIKKEENQIDVDALIAFQAEVEHEQE 420 Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGEN 454 ++ +++ + E + +++ ++ L E Sbjct: 421 LKDQEELLKQESMYKEYENNFNDFENEKEILLAEK 455 >gi|22299480|ref|NP_682727.1| transcription elongation factor NusA [Thermosynechococcus elongatus BP-1] gi|22295663|dbj|BAC09489.1| transcription termination-antitermination factor [Thermosynechococcus elongatus BP-1] Length = 395 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 117/375 (31%), Positives = 197/375 (52%), Gaps = 29/375 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56 L + + ++ E+++ + V + +++ K + ++ VE++ E Sbjct: 9 LRAMINEISQERNLPKHAVHQALKEALLKGYERYRRSLRSDHSHFEEDHFANFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + + E VEN +I+L + +G V + P +FGR+A Sbjct: 69 QEGFRILATKTIKETVENPDREIALADVIEVVQDARVGDTVLLDVTPDHQEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EFK+ G ++ G V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRRLIQEEFKELEGTVLLGRVLRFERQSVIMAVRSDASQPEVEAELPKW 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ V+ RGPQ+ +SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANSTFKVYLKRVKEGPQRGPQLEVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 A++R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AIAREANPPNHKVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ N+L PA V +V ++ + V+V +++S AIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANSLSPAPVEEVRLINPEARIAHVLVAPDKVSQAIGKEGQNVRLATRLTGWKI 368 Query: 340 DIITEEEDSINRQKD 354 ++ + + + Sbjct: 369 EVRDSSQYNYEEEDR 383 >gi|219684959|ref|ZP_03539900.1| transcription elongation protein NusA [Borrelia garinii PBr] gi|219671697|gb|EED28753.1| transcription elongation protein NusA [Borrelia garinii PBr] Length = 482 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 130/445 (29%), Positives = 238/445 (53%), Gaps = 23/445 (5%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKIFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP+G C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPIGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V + DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M + +++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFNKVMQDVVE 368 Query: 374 HL----------LVAEGFADVEELACVKISEIASIEGFDEETA----------VEIQGRA 413 L + + L+ + +I + DEE EI Sbjct: 369 EEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEINKIL 428 Query: 414 REYLEGIDITLQKKIRELGVSEELC 438 +E + I + + ++ EEL Sbjct: 429 KEGMIIIANENDESMEKVEEDEELL 453 >gi|219685679|ref|ZP_03540493.1| transcription elongation protein NusA [Borrelia garinii Far04] gi|219672795|gb|EED29820.1| transcription elongation protein NusA [Borrelia garinii Far04] Length = 482 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 131/445 (29%), Positives = 238/445 (53%), Gaps = 23/445 (5%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + V+ + TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFVKFDDNTGDLVVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + V + DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M + +++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFDKVMQDVVE 368 Query: 374 HL----------LVAEGFADVEELACVKISEIASIEGFDEETA----------VEIQGRA 413 L + + L+ + +I + DEE EI Sbjct: 369 EEQFEDISKISDLKLLDSSVISNLSKEGLDDINNFLQADEEVLFNLGVSYEKQEEINKIL 428 Query: 414 REYLEGIDITLQKKIRELGVSEELC 438 +E + I + + ++ EEL Sbjct: 429 KEGMIIIANENDESMEKVEEDEELL 453 >gi|298253047|ref|ZP_06976839.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1] gi|297532442|gb|EFH71328.1| transcription elongation factor NusA [Gardnerella vaginalis 5-1] Length = 360 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 15/363 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A ++ I+ + + +A++++ A +RVE++ G +++ E+ + Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 70 DNP----------YPAPTLGEEYDD--TPHDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 + QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N + Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASADLNNNAS 357 Query: 372 IAH 374 A Sbjct: 358 AAE 360 >gi|283782785|ref|YP_003373539.1| transcription termination factor NusA [Gardnerella vaginalis 409-05] gi|283441834|gb|ADB14300.1| transcription termination factor NusA [Gardnerella vaginalis 409-05] Length = 360 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 15/363 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A ++ I+ + + +A++++ A +RVE++ G +++ E+ + Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 70 DNP----------YPAPTLGEEYDD--TPRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 + QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N + Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASADLNNNAS 357 Query: 372 IAH 374 A Sbjct: 358 AAE 360 >gi|282898464|ref|ZP_06306454.1| NusA antitermination factor [Raphidiopsis brookii D9] gi|281196630|gb|EFA71536.1| NusA antitermination factor [Raphidiopsis brookii D9] Length = 424 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 135/415 (32%), Positives = 210/415 (50%), Gaps = 29/415 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + + ++ E+++ R V S + +++ K R + + VE++ + Sbjct: 9 LKDLIEKISLERNLPRLAVQSSIREALLKGYERYRRAQNLERRQFDENYFDNFEVELDID 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N QISL + P G V + P +FGR+A Sbjct: 69 GEGFRVLSTKIIVEEVTNSDHQISLDEVQQVAPEAQSGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF+D G ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVILAVSSSFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + + R K Y+ V + +QRGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDTYRSNATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V L D + + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 DI + + + + Q + + + E+ E Sbjct: 369 DIKDQAKYDYGAEDAKFAAVRANYQEESNQFEVIEEEYERDPDEGEDDFNSMEEE 423 >gi|226320845|ref|ZP_03796397.1| transcription elongation protein NusA [Borrelia burgdorferi 29805] gi|226233711|gb|EEH32440.1| transcription elongation protein NusA [Borrelia burgdorferi 29805] gi|312149161|gb|ADQ29232.1| transcription elongation protein NusA [Borrelia burgdorferi N40] Length = 482 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 123/395 (31%), Positives = 232/395 (58%), Gaps = 7/395 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ E F ++ +++ +K+ + + I +E +I Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDI 400 >gi|224533442|ref|ZP_03674035.1| transcription elongation protein NusA [Borrelia burgdorferi CA-11.2a] gi|225549360|ref|ZP_03770332.1| transcription elongation protein NusA [Borrelia burgdorferi 94a] gi|224513404|gb|EEF83762.1| transcription elongation protein NusA [Borrelia burgdorferi CA-11.2a] gi|225369988|gb|EEG99429.1| transcription elongation protein NusA [Borrelia burgdorferi 94a] gi|312148269|gb|ADQ30928.1| transcription elongation protein NusA [Borrelia burgdorferi JD1] Length = 482 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 123/395 (31%), Positives = 232/395 (58%), Gaps = 7/395 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ E F ++ +++ +K+ + + I +E +I Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKEGLDDI 400 >gi|139436991|ref|ZP_01771151.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC 25986] gi|133776638|gb|EBA40458.1| Hypothetical protein COLAER_00125 [Collinsella aerofaciens ATCC 25986] Length = 415 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 36/359 (10%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 +++ + EK ID+ ++ + S+ K+ + +V I+ TG I ++R LE Sbjct: 5 DMMSALMELCQEKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYR-LE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +++ + + + P + R+A Q AK I VR + R Sbjct: 64 PIDDSMDEEGNFT--------------EFEEIDVTPKNTSRIAAQHAKAEINAIVRNSAR 109 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRENL 176 ++ Y EF ++G++ISGTV + IV + + + R+E E Sbjct: 110 EQIYEEFSGRIGDLISGTVLQSTPDFTIVKIREGVEAELPHFDQRRYENERNERPMGERY 169 Query: 177 RPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 +K+ I DVR Q +++SRTHP+ M +LF EVPEIY G VQ+ Sbjct: 170 LHNQHIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQI 229 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 K+++R+PG R+K+AV S D +DPVGACVG +GSRV+AVV ELR E++D+++W D A + Sbjct: 230 KSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAVY 289 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 V NAL PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 290 VANALSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 348 >gi|297242938|ref|ZP_06926876.1| transcription elongation factor NusA [Gardnerella vaginalis AMD] gi|296889149|gb|EFH27883.1| transcription elongation factor NusA [Gardnerella vaginalis AMD] Length = 360 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 15/363 (4%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 +A ++ I+ + + +A++++ A +RVE++ G +++ E+ + Sbjct: 10 QLAAQQGINAEELDEALAEALRLAYMKTAHPAKHVRVELDERAGSFTVWARDEIPGKPTE 69 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 P+ +G D P DFGR+A +A+QVI Q R+AE DR + F Sbjct: 70 DNP----------YPAPTLGEEYDD--TPRDFGRLAAATARQVISQIFRKAEDDRVFGAF 117 Query: 135 KDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE 192 + G++I+G +++ + N+ V +G+ + ++ R E + E R G+R++ Y+ +V R Sbjct: 118 SGQKGKLINGIIQQDAKDNTNIHVAVGDVEAILPRREQVPGERYRHGERIRVYVVNVARG 177 Query: 193 QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVG 252 RGP++++SR+HP+ + +LF EVPE+ +G V + +++R+ G+R K+AV ++ ++P G Sbjct: 178 LRGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMSIAREAGARTKIAVRANTEGVNPKG 237 Query: 253 ACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVI 311 A +G GSRV+AV+ L EKIDIV WS D A FV AL PA T+V + E Sbjct: 238 ALIGPGGSRVRAVMENLGQEKIDIVDWSSDPAKFVAAALSPATATQVQVVSEKNQTAVAF 297 Query: 312 VPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEI 371 + QLSLAIG+ GQN RLA++LTGW I I + EE + + Q +N + Sbjct: 298 IHDAQLSLAIGKEGQNARLAAKLTGWKIGIESAEEHAKKVAAAQAQNAQPASVDLNNNAS 357 Query: 372 IAH 374 A Sbjct: 358 AAE 360 >gi|254412331|ref|ZP_05026105.1| transcription termination factor NusA [Microcoleus chthonoplastes PCC 7420] gi|196180641|gb|EDX75631.1| transcription termination factor NusA [Microcoleus chthonoplastes PCC 7420] Length = 459 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 203/386 (52%), Gaps = 29/386 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56 L ++ + ++ ++ + V + +++ K + ++ V+++ E Sbjct: 9 LKKMIEEISQSHNLPKSAVQQALREALIKGYERYRRAQRMERPHFDDEYFNNFEVDLDIE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N ISLK ++ +G V + P DFGR+A Sbjct: 69 EEGFRILCTKTIVEEVGNTDHHISLKEVQEVASEAQLGDSVVLDVTPDQRDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF++ G ++ V R E +VI+ + + + + Sbjct: 129 KQVLSQKLRDQQRKLIQEEFEELEGTVLQARVLRFERQSVIMAISSGFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + + R G K ++ VR RGPQ+++SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDTYRIGSTFKVFLKKVREGPHRGPQLVVSRASAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V +++ + + ++V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVEEVLLVNPEGRQAHILVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQA 365 DI + + + Q + Sbjct: 369 DIKDIAKYDYEAEHQKMQELQAAIAQ 394 >gi|320528334|ref|ZP_08029496.1| transcription termination factor NusA [Solobacterium moorei F0204] gi|320131248|gb|EFW23816.1| transcription termination factor NusA [Solobacterium moorei F0204] Length = 581 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 143/438 (32%), Positives = 232/438 (52%), Gaps = 12/438 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLLE 67 LL V +K++ ++VL + +++ KA + +++ EIN ++ I +++ Sbjct: 8 LLNAIRGVEDDKNVPENIVLEALTEAVAKAFKKDSELQDIEVKAEINKKSKTIDIYQYYN 67 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEVE+ +ISL+ A+ D + ++GG V + R A AK V QK+REAE+ Sbjct: 68 VVEEVEDDELEISLEDAKKLDSNAELGGQVREKKEITSMSRAAASLAKNVFRQKIREAEK 127 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y E+ D+ E++ GTV+ V+ ++ LG + ++ + I E L G ++ I Sbjct: 128 VAVYNEYIDQKDEMVIGTVESVKDKFTLISLGKTVALLSKSAEIPHEKLTEGQSIRVVIT 187 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 DV++E +G QVL+SR + +LF EVPEIY G+V++K+++R+ G R K+AV S + Sbjct: 188 DVQKETKGSQVLVSRADATLVKRLFEKEVPEIYQGVVEIKSIAREAGERTKMAVLSHNPD 247 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+G+C+G RGSRVQ ++ EL EKIDI W+ D V NAL PA + V+ +D Sbjct: 248 VDPIGSCIGPRGSRVQKIIDELHGEKIDIFQWNDDITELVKNALAPAEIISVLPGQDDNS 307 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 + VIV ++QLSLAIG+RG+N RLA +LTG IDI T +E + Q + Sbjct: 308 LLVIVSEDQLSLAIGKRGKNARLAVKLTGHKIDIKTRQELEDMGKDYDELLAQAEVMKQK 367 Query: 368 VDEIIAHLLVAEG--------FADVEELACVKISEIASIEGFDEETA-VEIQGRAREYLE 418 + E V + +A + SI DEE E+ R + + Sbjct: 368 LAEQAKAKSVERQKAAAKEEEEKRLAAIAKFRAENPDSIVDEDEEYIPEEMMERVNDTII 427 Query: 419 GI--DITLQKKIRELGVS 434 + +++ +E + Sbjct: 428 AEISNQPDEEEHQEAAIE 445 >gi|18158875|pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa gi|18158876|pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa Length = 366 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 24 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 76 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 77 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 121 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 122 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 182 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 242 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 301 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 302 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 >gi|256384305|gb|ACU78875.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. capri str. GM12] gi|256385138|gb|ACU79707.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455871|gb|ADH22106.1| transcription elongation factor NusA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 584 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 234/463 (50%), Gaps = 7/463 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V + N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V + Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D +++VP QLSLAIG++G +L + L I+I + Sbjct: 303 KIGDE--YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + + V I + E + I +A E Sbjct: 361 TIQEVETNTYTPKTKATKKEEKPVITTTKKPIKQTTKKEENQIDVDALIAFQAEVEHEQE 420 Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGENGIKTMEDL 462 ++ +++ + E + +++ ++ L E ++T + Sbjct: 421 LKDQEELLKQESMYKEYENNFNDFENEKEILLAEKQLETQNQI 463 >gi|15595145|ref|NP_212934.1| transcription elongation factor NusA [Borrelia burgdorferi B31] gi|218249928|ref|YP_002375299.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7] gi|223889315|ref|ZP_03623902.1| transcription elongation protein NusA [Borrelia burgdorferi 64b] gi|226321265|ref|ZP_03796793.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26] gi|3914177|sp|O51740|NUSA_BORBU RecName: Full=Transcription elongation protein nusA gi|2688748|gb|AAC67154.1| N-utilization substance protein A (nusA) [Borrelia burgdorferi B31] gi|218165116|gb|ACK75177.1| transcription elongation protein NusA [Borrelia burgdorferi ZS7] gi|223885236|gb|EEF56339.1| transcription elongation protein NusA [Borrelia burgdorferi 64b] gi|226233297|gb|EEH32048.1| transcription elongation protein NusA [Borrelia burgdorferi Bol26] Length = 482 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 122/390 (31%), Positives = 230/390 (58%), Gaps = 7/390 (1%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQD 365 Query: 375 LLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ E F ++ +++ +K+ + + I +E Sbjct: 366 VVEEEQFEEISKISDLKLLDPSVISNLSKE 395 >gi|260187857|ref|ZP_05765331.1| transcription elongation factor NusA [Mycobacterium tuberculosis CPHL_A] gi|289448503|ref|ZP_06438247.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] gi|289421461|gb|EFD18662.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] Length = 347 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKDGQNARLAARLTGWRIDIRGD 326 >gi|328955634|ref|YP_004372967.1| NusA antitermination factor [Coriobacterium glomerans PW2] gi|328455958|gb|AEB07152.1| NusA antitermination factor [Coriobacterium glomerans PW2] Length = 411 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 139/424 (32%), Positives = 214/424 (50%), Gaps = 48/424 (11%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ + EK ID+ ++ + S+ K+ + V I+ TG + ++ Sbjct: 5 MMDALMELCQEKHIDQLYLIDCLEQSLSKSYADILHLEYGAEVTIDRATGKVYVY----- 59 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVIIQKVREA 125 ++ +P + G + P D R+A Q AK I VR + Sbjct: 60 -------------ELVPKGEPDEETGEYTEFDKKDVTPKDTSRIAAQHAKAEINAIVRNS 106 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------RDETISRE 174 R++ Y EF D++G+II+GTV + IV + + + R+E + E Sbjct: 107 AREQIYEEFSDRIGDIITGTVLQSTPDFTIVKIREGVEAELPHFDLRRFENERNERPAGE 166 Query: 175 NLRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVPEIYNGIV 224 R+K+ I DVR Q +++SRTHP + +LF +EVPEIY G V Sbjct: 167 RYMHNQRLKAVIIDVRDPNSTMQPQRGERSRPPIVISRTHPALIKRLFELEVPEIYEGTV 226 Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 +VK+++R+PG R+K+AV S D +DPVGACVG +GSRV+ VV ELR E++D+++W D + Sbjct: 227 EVKSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRTVVGELRGERVDVILWDADPS 286 Query: 285 TFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 FV NAL PA V++V++DE+ VIVP +QLSLAIG+ GQN RLA++LTGW IDI E Sbjct: 287 VFVANALSPAKVSRVLIDEEKSYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKNE 346 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELA-----CVKISEIASIE 399 + + K+ I+ DE V+E A + E +IE Sbjct: 347 -TLAADILKNIPVPAAVDDDLISDDEPRRCQYVSEDNIRCRNQARPGSRYCGVHEQDAIE 405 Query: 400 GFDE 403 G ++ Sbjct: 406 GAED 409 >gi|15842382|ref|NP_337419.1| transcription elongation factor NusA [Mycobacterium tuberculosis CDC1551] gi|13882681|gb|AAK47233.1| N utilization substance protein A [Mycobacterium tuberculosis CDC1551] Length = 343 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 1 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 53 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 54 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 98 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 99 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 158 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 159 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 218 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 219 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 278 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 279 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 322 >gi|209527729|ref|ZP_03276225.1| NusA antitermination factor [Arthrospira maxima CS-328] gi|209491850|gb|EDZ92209.1| NusA antitermination factor [Arthrospira maxima CS-328] Length = 415 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 29/406 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57 L + ++++ E+++ + V + +++ K + + VE++ E Sbjct: 9 LKDMIESISTERNLPKQAVEEALREALLKGYERYRRTVQIDTQFSEDYFDNFDVELDVEE 68 Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + L +VE+ N QISLK ++ P +G V+ + P +FGR+A Sbjct: 69 EGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAQLGDTVTLDVTPEQNEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++ Sbjct: 189 EQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSNHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD + ++ NAL PA V +V ++ + R V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVE 385 DI + + + R V E + + A ++++ Sbjct: 369 DIKDAAKYDAAAEDEMEARRFQGQLTAEVSEAESLDMEATETSEIQ 414 >gi|315225958|ref|ZP_07867746.1| transcription termination factor NusA [Parascardovia denticolens DSM 10105] gi|315120090|gb|EFT83222.1| transcription termination factor NusA [Parascardovia denticolens DSM 10105] Length = 385 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 115/329 (34%), Positives = 188/329 (57%), Gaps = 15/329 (4%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A E+ ID + + + ++++++ A RVE++ G +++ E+ +E Sbjct: 24 LAAEQGIDAERLDAALSEALRLAYLKNPHAAKHARVELDERAGSFTVWAQDEIPQEPT-- 81 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 A D P +G D P DFGR A A+QVI R+A D+ + F Sbjct: 82 --------AEDPHPRPALGEEYDD--TPEDFGRQAAYIARQVITALFRKAADDKIFGAFA 131 Query: 136 DKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQ 193 + G++I+G V++ + GN+ + +G+ + ++ R E + E R G R++ Y+ V R Sbjct: 132 GQKGKLITGVVQQDSGDRGNLHIAVGDVEAILPRREQVPGERFRHGQRIRVYVVSVNRGL 191 Query: 194 RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGA 253 +GP++++SR+HP+ + +LF EVPE+ +G VQ+ +++R+ G R K+AV ++ ++P GA Sbjct: 192 KGPEIIVSRSHPELIRRLFEREVPELASGAVQIMSIAREAGERTKIAVRANAQGVNPKGA 251 Query: 254 CVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIV 312 +G G RV+AV+ L DEKIDIV WS D A FV AL PA KV + E ++ Sbjct: 252 LIGPAGQRVRAVMENLGDEKIDIVDWSEDPAKFVGAALSPAHAVKVTVVSEKNKTTLALI 311 Query: 313 PKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +Q+SLAIG+ GQN RLA++LTGW I I Sbjct: 312 HDDQMSLAIGKEGQNARLAAKLTGWKIAI 340 >gi|111115635|ref|YP_710253.1| transcription elongation factor NusA [Borrelia afzelii PKo] gi|216263366|ref|ZP_03435361.1| transcription elongation protein NusA [Borrelia afzelii ACA-1] gi|110890909|gb|ABH02077.1| N-utilization substance protein A [Borrelia afzelii PKo] gi|215980210|gb|EEC21031.1| transcription elongation protein NusA [Borrelia afzelii ACA-1] Length = 482 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 123/396 (31%), Positives = 233/396 (58%), Gaps = 7/396 (1%) Query: 15 AVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN 74 ++A ++S+ + + + +S+ A + +G+ + ++ + +TGD+ ++ ++VEEV++ Sbjct: 11 SIANDRSMSIESIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLIVYAKKKIVEEVKD 70 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +I K + I G + P F R+++Q AKQ ++ E + EF Sbjct: 71 SLLEILEKDISREN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEF 128 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQR 194 K K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + Sbjct: 129 KSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYSLNDKIRVLVYNVKKGKN 188 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGAC 254 G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVP 313 +G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ M D+++ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FDKVMQ 364 Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEI 409 ++ E F ++ +++ +K+ + + I +E +I Sbjct: 365 DVVEEEQFEEISKISDLKLLDSSVISNLSKEGLNDI 400 >gi|301320952|gb|ADK69595.1| transcription termination factor NusA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 584 Score = 256 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 125/455 (27%), Positives = 230/455 (50%), Gaps = 7/455 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I IG + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIGDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISG-TVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V + Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D +++VP QLSLAIG++G +L + L I+I + Sbjct: 303 KIGDE--YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + I + V + + E + I +A E Sbjct: 361 TKQEVETNTYIPKTKTTKKEEKPVITTIKKPVKQTIKKEENQIDVDALIAFQAEVEHEQE 420 Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGEN 454 ++ +++ + E + +++ ++ L E Sbjct: 421 LKDQEELLKQEYIYKEYENNFNDFENEKEIVLAEK 455 >gi|260201972|ref|ZP_05769463.1| transcription elongation factor NusA [Mycobacterium tuberculosis T46] gi|289444392|ref|ZP_06434136.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] gi|289417311|gb|EFD14551.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] Length = 347 Score = 256 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPATEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 326 >gi|300866111|ref|ZP_07110839.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506] gi|300335907|emb|CBN55997.1| transcription elongation factor NusA [Oscillatoria sp. PCC 6506] Length = 427 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 133/425 (31%), Positives = 209/425 (49%), Gaps = 34/425 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS--------LYGTM--SDIRVEINPETG 58 L + D ++ E+++ + V + + +++ K + + VE++ E Sbjct: 9 LKDMVDVISKERNLPKHAVQAALREALVKGYERYRRTQRLDHFSEEYFDNFEVELDIEEE 68 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQ 116 + +VEEV N QI+L ++ +G V + P DFGR+A KQ Sbjct: 69 GFRVLATKSIVEEVSNPDHQIALLEVQEVATEAQLGDTVILDVTPDQNDFGRMAAIQTKQ 128 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDET 170 V+ QK+R+ +R EFKD ++ V R E + I+ + + + + E Sbjct: 129 VLAQKLRDQQRKMIQEEFKDLEETVLQARVLRFERQSAILAVSSGFGQPEVEAELPKREQ 188 Query: 171 ISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + +N R K Y+ V RGPQ+++SR +V LF EVPEI +G+V++ AV Sbjct: 189 LPNDNYRANATFKVYLKKVGEGATRGPQLVVSRADAGLVVYLFANEVPEIEDGVVRIVAV 248 Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 +R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WSPD Sbjct: 249 AREANPPSRHVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 308 Query: 283 SATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +V + + R ++V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 309 PATYIANALSPARVDEVRLVAPEGRRAHILVAEDQLSLAIGKEGQNVRLAARLTGWKIDI 368 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 + + + + F + E + + E Sbjct: 369 KDIAKYDRAAEDSKLAAEASRLALAAEE-------YESDFDEDSEETDESDFDESDRELD 421 Query: 402 DEETA 406 + ETA Sbjct: 422 ETETA 426 >gi|15609978|ref|NP_217357.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Rv] gi|31794018|ref|NP_856511.1| transcription elongation factor NusA [Mycobacterium bovis AF2122/97] gi|121638721|ref|YP_978945.1| transcription elongation factor NusA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662682|ref|YP_001284205.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|148824031|ref|YP_001288785.1| transcription elongation factor NusA [Mycobacterium tuberculosis F11] gi|167967194|ref|ZP_02549471.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|215404813|ref|ZP_03416994.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|215412673|ref|ZP_03421391.1| transcription elongation factor NusA [Mycobacterium tuberculosis 94_M4241A] gi|215431783|ref|ZP_03429702.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|215447095|ref|ZP_03433847.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|218754589|ref|ZP_03533385.1| transcription elongation factor NusA [Mycobacterium tuberculosis GM 1503] gi|224991213|ref|YP_002645902.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253798073|ref|YP_003031074.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 1435] gi|254232936|ref|ZP_04926263.1| N utilization substance protein A nusA [Mycobacterium tuberculosis C] gi|254365487|ref|ZP_04981532.1| N utilization substance protein A nusA [Mycobacterium tuberculosis str. Haarlem] gi|254551905|ref|ZP_05142352.1| transcription elongation factor NusA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260206152|ref|ZP_05773643.1| transcription elongation factor NusA [Mycobacterium tuberculosis K85] gi|289553371|ref|ZP_06442581.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 605] gi|289575542|ref|ZP_06455769.1| N utilization substance protein A nusA [Mycobacterium tuberculosis K85] gi|289746639|ref|ZP_06506017.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|289754949|ref|ZP_06514327.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|289758961|ref|ZP_06518339.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|289763017|ref|ZP_06522395.1| N utilization substance protein A nusA [Mycobacterium tuberculosis GM 1503] gi|294994068|ref|ZP_06799759.1| transcription elongation factor NusA [Mycobacterium tuberculosis 210] gi|297635454|ref|ZP_06953234.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN 4207] gi|297732453|ref|ZP_06961571.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN R506] gi|298526309|ref|ZP_07013718.1| N utilization substance protein A nusA [Mycobacterium tuberculosis 94_M4241A] gi|306777125|ref|ZP_07415462.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu001] gi|306781031|ref|ZP_07419368.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu002] gi|306785669|ref|ZP_07423991.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu003] gi|306789709|ref|ZP_07428031.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu004] gi|306794342|ref|ZP_07432644.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu005] gi|306798766|ref|ZP_07437068.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu006] gi|306804612|ref|ZP_07441280.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu008] gi|306807354|ref|ZP_07444022.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu007] gi|306968905|ref|ZP_07481566.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu009] gi|306973241|ref|ZP_07485902.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu010] gi|307080950|ref|ZP_07490120.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu011] gi|307085545|ref|ZP_07494658.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu012] gi|313659785|ref|ZP_07816665.1| transcription elongation factor NusA [Mycobacterium tuberculosis KZN V2475] gi|61229169|sp|P0A5M2|NUSA_MYCTU RecName: Full=Transcription elongation protein nusA gi|61229170|sp|P0A5M3|NUSA_MYCBO RecName: Full=Transcription elongation protein nusA gi|3261746|emb|CAB08449.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium tuberculosis H37Rv] gi|31619612|emb|CAD95051.1| PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA [Mycobacterium bovis AF2122/97] gi|121494369|emb|CAL72850.1| Probable N utilization substance protein A nusA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601995|gb|EAY61005.1| N utilization substance protein A nusA [Mycobacterium tuberculosis C] gi|134151000|gb|EBA43045.1| N utilization substance protein A nusA [Mycobacterium tuberculosis str. Haarlem] gi|148506834|gb|ABQ74643.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Ra] gi|148722558|gb|ABR07183.1| N utilization substance protein A nusA [Mycobacterium tuberculosis F11] gi|224774328|dbj|BAH27134.1| transcription elongation factor [Mycobacterium bovis BCG str. Tokyo 172] gi|253319576|gb|ACT24179.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 1435] gi|289438003|gb|EFD20496.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 605] gi|289539973|gb|EFD44551.1| N utilization substance protein A nusA [Mycobacterium tuberculosis K85] gi|289687167|gb|EFD54655.1| transcription elongation factor NusA [Mycobacterium tuberculosis 02_1987] gi|289695536|gb|EFD62965.1| transcription elongation factor NusA [Mycobacterium tuberculosis EAS054] gi|289710523|gb|EFD74539.1| N utilization substance protein A nusA [Mycobacterium tuberculosis GM 1503] gi|289714525|gb|EFD78537.1| transcription elongation factor NusA [Mycobacterium tuberculosis T85] gi|298496103|gb|EFI31397.1| N utilization substance protein A nusA [Mycobacterium tuberculosis 94_M4241A] gi|308214494|gb|EFO73893.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu001] gi|308326139|gb|EFP14990.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu002] gi|308329669|gb|EFP18520.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu003] gi|308333808|gb|EFP22659.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu004] gi|308337334|gb|EFP26185.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu005] gi|308340977|gb|EFP29828.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu006] gi|308346277|gb|EFP35128.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu007] gi|308348792|gb|EFP37643.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu008] gi|308353518|gb|EFP42369.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu009] gi|308357359|gb|EFP46210.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu010] gi|308361312|gb|EFP50163.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu011] gi|308364913|gb|EFP53764.1| N utilization substance protein A nusA [Mycobacterium tuberculosis SUMu012] gi|323718540|gb|EGB27710.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CDC1551A] gi|326904454|gb|EGE51387.1| N utilization substance protein A nusA [Mycobacterium tuberculosis W-148] gi|328457846|gb|AEB03269.1| N utilization substance protein A nusA [Mycobacterium tuberculosis KZN 4207] Length = 347 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 31/344 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDR 181 Y EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 326 >gi|284052678|ref|ZP_06382888.1| transcription elongation factor NusA [Arthrospira platensis str. Paraca] gi|291568133|dbj|BAI90405.1| transcription termination factor NusA [Arthrospira platensis NIES-39] Length = 415 Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats. Identities = 127/394 (32%), Positives = 210/394 (53%), Gaps = 29/394 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57 L + ++++ E+++ + V + +++ K + + VE++ E Sbjct: 9 LKDMIESISTERNLPKQAVEEALREALLKGYERYRRTVQIDTQFTEDYFDNFDVELDVEE 68 Query: 58 GDISLFRL-LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + L +VE+ N QISLK ++ P ++G V+ + P +FGR+A Sbjct: 69 EGFRVLAKNLTIVEQASNQDHQISLKDVQEVAPEAELGDTVTLDVTPEQNEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF + G ++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDKQRKMIQDEFAEHEGTVLQARVLRFERQSVIMAVSSVYGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + ++N R + Y+ V + QRGPQ+++SR+ +V LF EVPEI + +V++ Sbjct: 189 EQLPKDNYRANATFRVYLKRVSQGSQRGPQLIVSRSDAGLVVYLFANEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + D +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSNYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD + ++ NAL PA V +V ++ + R V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSIYIANALSPARVDEVRLVNPEERRAHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 DI + + + + V E + Sbjct: 369 DIKDVAKYDAAAEDEKVAQEFQGQLTGEVSEEES 402 >gi|325138660|gb|EGC61216.1| Transcription elongation protein nusA [Neisseria meningitidis ES14902] Length = 277 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 115/274 (41%), Positives = 172/274 (62%), Gaps = 9/274 (3%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 4 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 63 Query: 67 EVV--EEVENYTCQISLKVARDRDPS--IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E+ + +++ ++ P I IG + LP FGR A Q+AKQ+I+Q++ Sbjct: 64 LIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQLPNEGFGRQAAQTAKQIILQRI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL--GNSDGVIRRDETISRENLRPGD 180 R+AER++ EF +I+SGTVKRVE +IV++ G D +I RD+ I REN R GD Sbjct: 124 RDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVVAGKLDALIPRDQMIPRENFRSGD 183 Query: 181 RVKSYIYDVRREQR--GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 R+++ V QV+LSRT F+VKL+ EVPEI +G+++++AV+RDPG RAK Sbjct: 184 RIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYANEVPEIADGMLEIRAVARDPGQRAK 243 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +AV ++D IDP G C+G+RGSRV AV EL E Sbjct: 244 VAVKANDQRIDPQGTCIGVRGSRVNAVSNELSGE 277 >gi|227495147|ref|ZP_03925463.1| transcription termination factor NusA [Actinomyces coleocanis DSM 15436] gi|226831599|gb|EEH63982.1| transcription termination factor NusA [Actinomyces coleocanis DSM 15436] Length = 343 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 199/363 (54%), Gaps = 24/363 (6%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + V ID ++ + D++ K + G++ + R+EI+ +TG +++ Sbjct: 1 MSALREVESTLEIDGITLVKAIEDALLKVYHKMPGSIKEARIEIDRKTGKVAVMA--TEF 58 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 ++ +N + P +FGR+A +A+ +I Q++REA+ + Sbjct: 59 DDDDNPIGE--------------------FDDTPKEFGRIATATARSIITQRIREADDSK 98 Query: 130 QYLEFKDKVGEIISGTVK-RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYD 188 EF++K G ++ GTV+ ++ +G + ++ E + E G +++Y+ + Sbjct: 99 VLGEFRNKTGTVVVGTVEAHTNPHFTLLRVGEFEAILPESEKVPGETYEHGKVIRAYVLE 158 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSI 248 V R +RG ++ +SR+HP F+ LF EVPEI G+V++K+V+R+ G R+K+AV +++ I Sbjct: 159 VTRGERGARITVSRSHPNFVEALFAREVPEIAQGLVEIKSVAREAGHRSKIAVAATEEGI 218 Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGR 307 + GAC+G G RV+AV+TEL+ EKIDIV +S D A F+ N+L PA V+ V +D + Sbjct: 219 NAKGACIGPMGRRVRAVMTELQGEKIDIVDYSTDPARFIANSLSPARVSTVTIDSLPEKK 278 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 VIVP Q SLAIGR GQN RLA++L G+ IDI ++ E R ++N Sbjct: 279 ATVIVPDFQFSLAIGREGQNARLAARLCGFHIDIHSDTESGYGVMASDVSRPDVSNASLN 338 Query: 368 VDE 370 ++ Sbjct: 339 EED 341 >gi|203288228|ref|YP_002223243.1| N-utilization substance protein A [Borrelia recurrentis A1] gi|201085448|gb|ACH95022.1| N-utilization substance protein A [Borrelia recurrentis A1] Length = 494 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 132/424 (31%), Positives = 241/424 (56%), Gaps = 15/424 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+ Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I + A+ + V + P F R+++Q AKQ ++ E + Sbjct: 80 EVKNNVMEILVDDAKTF--EVVDNEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D Sbjct: 198 KGRNGIEVILSRTHPKFIAELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + ++DED+ + Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDTFEM----FD 373 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 +II + + F ++ +++ +K+ D++ ++ R + ++ + K+ Sbjct: 374 KIIQDNVQEDEFEEINKISELKV--------LDDDIVAKLIQRDLDDIDNFLNASEDKLF 425 Query: 430 ELGV 433 ELG+ Sbjct: 426 ELGI 429 >gi|203284696|ref|YP_002222436.1| N-utilization substance protein A [Borrelia duttonii Ly] gi|201084139|gb|ACH93730.1| N-utilization substance protein A [Borrelia duttonii Ly] Length = 494 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 132/424 (31%), Positives = 241/424 (56%), Gaps = 15/424 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + TGD+ ++ +V+ Sbjct: 20 QMIANIASERGMSIDAIRKTVRESVIIAYKKYFGTSDNALIKFDDNTGDLIVYSKKRIVD 79 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I + A+ + V + P F R+++Q AKQ ++ E + Sbjct: 80 EVKNNVMEILVDDAKTF--EVVDNEYVYVEINPKIFDRLSIQVAKQRTKSDLQGIEDNEL 137 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + RE D+V+ +Y V+ Sbjct: 138 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSPREVYSLNDKVRVLVYSVK 197 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S +D Sbjct: 198 KGRNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEVDS 257 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ ++L PA + ++DED+ + Sbjct: 258 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPAKIDNVYIIDEDLHKAL 317 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V +QLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D Sbjct: 318 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQDTFEM----FD 373 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 +II + + F ++ +++ +K+ D++ ++ R + ++ + K+ Sbjct: 374 KIIQDNVQEDEFEEINKISELKV--------LDDDIVAKLIQRDLDDIDNFLNASEDKLF 425 Query: 430 ELGV 433 ELG+ Sbjct: 426 ELGI 429 >gi|224532423|ref|ZP_03673051.1| transcription elongation protein NusA [Borrelia burgdorferi WI91-23] gi|224512646|gb|EEF83019.1| transcription elongation protein NusA [Borrelia burgdorferi WI91-23] Length = 336 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 114/327 (34%), Positives = 202/327 (61%), Gaps = 3/327 (0%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENY 75 +A ++ + D + + +S+ A + +G+ + ++ + +TGD+S++ ++V+EV++ Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 76 TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFK 135 +I K + I G + P F R+++Q AKQ ++ E + EFK Sbjct: 72 LLEILEKDISKEN--IVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 136 DKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG 195 K+ +++ G V++ G++ V+LGN+DG+I + RE D+++ +Y+V++ + G Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNG 189 Query: 196 PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACV 255 +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDPVG C+ Sbjct: 190 IEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCI 249 Query: 256 GMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPK 314 G +G R+Q+++ EL EKIDI+ +S D F+ ++L P+ + V + DED+ + V+V Sbjct: 250 GQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSD 309 Query: 315 EQLSLAIGRRGQNVRLASQLTGWTIDI 341 +QLSLAIG+ GQNVRLA++L W ID+ Sbjct: 310 DQLSLAIGKMGQNVRLANRLLDWAIDV 336 >gi|269123542|ref|YP_003306119.1| NusA antitermination factor [Streptobacillus moniliformis DSM 12112] gi|268314868|gb|ACZ01242.1| NusA antitermination factor [Streptobacillus moniliformis DSM 12112] Length = 362 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 111/347 (31%), Positives = 192/347 (55%), Gaps = 6/347 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M S ++ L + + EK I + +L + + A + + ++ +EI+ TGD+ Sbjct: 1 MKSKDKATFLDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDV 60 Query: 61 SLFRLLEVVEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 +F ++++ V N T +I A++ I +G + L +F R A+Q AK + Sbjct: 61 KMFCEKLIIDDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSI 120 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENL 176 IIQ +RE E++ + +I++ V+R E G++ V + D +I + E S + + Sbjct: 121 IIQYIREQEKELICKQLTAIEHQIVNVIVRRIEENGSLYVGMNGLDLIIPQRELSSLDKV 180 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 + GDR+ +YI V R P+V ++R + + KLF EVPEI +GI+ +K ++R+ G + Sbjct: 181 QVGDRLVAYIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVK 240 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 AK+A++S D +ID G+C+G G R+ ++ EL EKI++V W+ D FV NAL PA + Sbjct: 241 AKVAIYSEDPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEI 300 Query: 297 TKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + +ED +V V QL+LAIG++G N +LA +L ++I Sbjct: 301 FSVEIVRNEDEIVAKVEVDPSQLTLAIGKKGVNSKLAGKLCKLRVNI 347 >gi|229818209|ref|ZP_04448491.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM 20098] gi|229784460|gb|EEP20574.1| hypothetical protein BIFANG_03506 [Bifidobacterium angulatum DSM 20098] Length = 346 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 199/360 (55%), Gaps = 20/360 (5%) Query: 7 LEL-LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +EL L +A E+ ID + + ++++++ A R+E++ G +++ Sbjct: 1 MELDLAGIHKLAAEQGIDAETLDDALSEALRLAYLKTPHAAKHARIELDDRAGTFTVWAA 60 Query: 66 LEV--VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 E+ EN P+ +G D P DFGR+A +A+QVI R Sbjct: 61 DEIPGTPTEENPH------------PAPTLGEEYDD--TPKDFGRLAAATARQVITLLFR 106 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 AE ++ + F + G++I+G V++ + NV + +G+ + ++ R E + E R G+R Sbjct: 107 HAEDEKIFGAFSGQKGKLITGIVQQDVKDSSNVHIAMGDVEALLPRREQVPGERYRHGER 166 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 ++ Y+ +V R +GP++++SR+HP+ + LF EVPE+ +G V + A++R+ G+R K+AV Sbjct: 167 LRVYVVNVGRGLKGPEIIVSRSHPELVRCLFEREVPELVSGAVSIMAIAREAGARTKIAV 226 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 ++ ++P GA +G G+RV+AV+ L EKIDIV +S D A FV +AL PA+ T V Sbjct: 227 KANTEGVNPKGALIGPGGARVRAVMENLGQEKIDIVDYSDDPAKFVASALSPAVATGVQI 286 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + E + +QLSLAIG+ GQN RLA++LTGW I I + E + + + + Sbjct: 287 ISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESAETHAKKMAEQTEQADE 346 >gi|78779969|ref|YP_398081.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9312] gi|78713468|gb|ABB50645.1| NusA antitermination factor [Prochlorococcus marinus str. MIT 9312] Length = 468 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 31/370 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + ++V + +++ K + ++ V ++ + Sbjct: 12 LIEDISEEKKLPPNIVELALREALLKGYEKYRKTFYIGVVEDPFDEEYFNNFDVGLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QISL + IG V + P DFGR+A + K Sbjct: 72 EGYRVLSSKIIVEEVESEDHQISLAEVKQVAEDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRGVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V +V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN 350 + E Sbjct: 372 VKNSHEYDQK 381 >gi|126697021|ref|YP_001091907.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9301] gi|126544064|gb|ABO18306.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9301] Length = 467 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 31/370 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + ++V + + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QISL + IG V + P DFGR+A + K Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLIEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S ++ +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVENEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN 350 + E Sbjct: 372 VKNSHEYDQE 381 >gi|187918654|ref|YP_001884220.1| transcription elongation factor NusA [Borrelia hermsii DAH] gi|119861502|gb|AAX17297.1| N utilization substance protein A [Borrelia hermsii DAH] Length = 496 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 136/425 (32%), Positives = 242/425 (56%), Gaps = 15/425 (3%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVE 70 Q+ +A E+ + D + + +S+ A + +GT + ++ + +TGD+ ++ ++VE Sbjct: 21 QMISNIASERGMSIDAIRKTVRESVMIAYKKYFGTSENALIKFDEDTGDLVVYSKKKIVE 80 Query: 71 EVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQ 130 EV+N +I ++ + G + P F R+++Q AKQ ++ E + Sbjct: 81 EVQNDILEILQDDIQEF--EVVEDGYAYIEIDPKIFDRLSIQVAKQRTKSDLQGIEDNEL 138 Query: 131 YLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 YLEFK K+ +I+ G V++ G++ V+LG++DGVI + SRE D+V+ +Y V+ Sbjct: 139 YLEFKHKLHKIVIGYVQQNRNGDLYVNLGSTDGVIPKKYQSSREVYGLNDKVRVLVYSVK 198 Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDP 250 + + G +V+LSRTHP+F+ +L +E+PEI GI+++ + RDPG R K+AV+S IDP Sbjct: 199 KGKNGIEVVLSRTHPKFIEELLTLEIPEIEEGIIKIHKIVRDPGYRTKVAVYSEKEEIDP 258 Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK-VVLDEDVGRIE 309 VG C+G +G R+Q+++ EL EKIDI+ +S D F+ +AL PA + ++DED+ + Sbjct: 259 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSRDIKEFIRDALTPAKIDNVYIVDEDLHKAL 318 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 V+V EQLSLAIG+ GQNVRLA++L W ID+ T + + + ++ F M D Sbjct: 319 VVVSDEQLSLAIGKMGQNVRLANRLLDWAIDVKTNSQFAEMKASGEFKQETFEM----FD 374 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 +I+ + + F ++ ++ +KI D + ++ + ++ ++ + Sbjct: 375 KILQDNVQEDEFEEINRISELKI--------LDSDIVDKLIEAGLDDIDNFLDASEENLF 426 Query: 430 ELGVS 434 ELG+S Sbjct: 427 ELGIS 431 >gi|42560896|ref|NP_975347.1| transcription elongation factor NusA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492393|emb|CAE76989.1| transcriptional terminator [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 584 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 124/455 (27%), Positives = 229/455 (50%), Gaps = 7/455 (1%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N ELL+ + EK I ++ +++ + + +QKA Y T + I+++IN TG I++ + Sbjct: 3 NGTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINENTGLITMHQ 62 Query: 65 LLEVVEE--VENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 L+VV++ +++ +I+L A+ ++P I I + P+ +F R+ V +Q+ QK Sbjct: 63 ELKVVDDEQLDDDWLEITLSKAKLKNPDIQIDDTIYKPIEFSEEFSRMVVNQVRQIFQQK 122 Query: 122 VREAERDRQYLEFKDKVGEIISG-TVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 +REAER R Y +F GE++ V N ++D+ + + + +TI+ E + + Sbjct: 123 IREAERARIYEQFVSLEGEVVQAKIVGMNRENNYVLDINGTTAYLWKSKTINNEIFQINE 182 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + YI V +E + Q+ +SRT P F+ KL EVPE+ GIV++KAVSR+PG R+K+A Sbjct: 183 IIDVYIEVVEKESKLSQISISRTAPNFLTKLIEREVPEVRMGIVEIKAVSREPGKRSKVA 242 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V + +++++P+GA +G+ G+R+ + L+ EKIDI+ W D T++INA+ P V + Sbjct: 243 VITHNNNVEPIGAIIGVGGNRINRISDILKGEKIDIIRWDEDQITYLINAMTPVKVISIN 302 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D +++VP QLSLAIG++G +L + L I+I + Sbjct: 303 KIGDE--YDIVVPDTQLSLAIGKQGVAAKLIASLLKTKINIFSYSTALKENMDILWNGDT 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 + I + V + + E + I +A E Sbjct: 361 TKQEVETNTYIPKTKTTKKEEKPVITTIKKPVKQTIKKEENQIDVDALIAFQAEVEHEQE 420 Query: 421 DITLQKKIRELGV-SEELCSIPGIDSKIKVALGEN 454 ++ +++ + E + +++ ++ L E Sbjct: 421 LKDQEELLKQEYIYKEYENNFNDFENEKEIVLAEK 455 >gi|318042328|ref|ZP_07974284.1| transcription elongation factor NusA [Synechococcus sp. CB0101] Length = 477 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 191/369 (51%), Gaps = 31/369 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV S + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPAQVVESALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L IG V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALAEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEAVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSI 349 I E Sbjct: 372 IKNSTEYDQ 380 >gi|148243067|ref|YP_001228224.1| transcription elongation factor NusA [Synechococcus sp. RCC307] gi|147851377|emb|CAK28871.1| Transcription elongation factor NusA [Synechococcus sp. RCC307] Length = 471 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 128/376 (34%), Positives = 196/376 (52%), Gaps = 31/376 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPE 56 + + ++ EK + +VV + + +++ K + S+ V ++ + Sbjct: 11 ALIEDISEEKKLPANVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLDLD 70 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEVE+ QI L + +G V + P DFGR+A + Sbjct: 71 EEGYRVLASKIIVEEVESEDHQIGLADVQQVTDDAQLGDTVVLDVTPEKDDFGRMAAATT 130 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+RE +R EF D +++ V R E +VI+ + + + R Sbjct: 131 KQVLAQKLREHQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRR 190 Query: 169 ETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ Sbjct: 191 DQLPNDNYRANATFKVFLKEVSEIARRGPQLFISRANAGLVVYLFENEVPEIQEGSVRIV 250 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 251 AVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWS 310 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW I Sbjct: 311 PDPGQYLANSLSPARVDMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKI 370 Query: 340 DIITEEEDSINRQKDF 355 DI EE + + Sbjct: 371 DIKNSEEYDQASEDEQ 386 >gi|123969228|ref|YP_001010086.1| transcription elongation factor NusA [Prochlorococcus marinus str. AS9601] gi|123199338|gb|ABM70979.1| N utilization substance protein A [Prochlorococcus marinus str. AS9601] Length = 467 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 31/370 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + ++V + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPNIVELALREALLKGYEKYRKTFYIGVNQDPFDEEYFSNFDVGLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QISL + IG V + P DFGR+A + K Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLVEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEEEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 + +++N+L PA V +V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 NPIQYILNSLSPAKVDQVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN 350 + E Sbjct: 372 VKNSHEYDQE 381 >gi|218960602|ref|YP_001740377.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] gi|167729259|emb|CAO80170.1| transcription elongation factor NusA [Candidatus Cloacamonas acidaminovorans] Length = 411 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 121/417 (29%), Positives = 226/417 (54%), Gaps = 8/417 (1%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +SAN L+ L A+ K +++D + +++ +++ + + ++V I+ G + Sbjct: 1 MSANMLDALNKLAAI---KQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVK 57 Query: 62 LFRLLEVVEEVENYTCQISLKVAR-DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 + VVE E QISL AR D ++ +G + + +F V++ +++I Sbjct: 58 VKFKSLVVEREEGLG-QISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQD 116 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPG 179 K+R+ E ++ +F + I++G +K +YG I+D G+ D ++ DE I E R G Sbjct: 117 KIRQLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGHVDALLPVDEQIENEFYRVG 176 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 D +K+Y+ ++R ++ G ++LSRT+P+F+ KLF E+P I++G ++++ + R+PG R K+ Sbjct: 177 DNIKAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKV 236 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 + + D +DP+ ACVG +G+R+ ++ EL E+IDIV+ S D + NAL K Sbjct: 237 ELEAEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALG-VEGIKR 295 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 V+ E VI+ + +AIG++G+NV+LA++L G IDI T E + Sbjct: 296 VIIERNHSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEE-KMAKERRTV 354 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + V IA L G+ V+++ + E+ ++EG ++TA ++ A+ + Sbjct: 355 SHITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAKYF 411 >gi|159904155|ref|YP_001551499.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9211] gi|159889331|gb|ABX09545.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9211] Length = 471 Score = 252 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 135/456 (29%), Positives = 217/456 (47%), Gaps = 35/456 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ + Sbjct: 12 LIDDISEEKKLPAQVVETALREALLKGYERYRRTLYLGINENPFEEEYFSNFDVGLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI+L IG V + P +FGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALSEVMQVAEDAQIGDTVVLDVTPEKEEFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPTRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSA 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPVQYISNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I +E + + +E E A + + + + + Sbjct: 372 IKNSQEYDQESEDSAVAELISQRE----EEESLQREAEERLAAEQAARAEEDARLRELYP 427 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 E+ I+ E E ++ + G+S E Sbjct: 428 LPEDDEENIEESTTELEELPISENEEAKQNEGLSNE 463 >gi|158334115|ref|YP_001515287.1| transcription elongation factor NusA [Acaryochloris marina MBIC11017] gi|158304356|gb|ABW25973.1| transcription termination factor NusA [Acaryochloris marina MBIC11017] Length = 452 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 127/396 (32%), Positives = 203/396 (51%), Gaps = 30/396 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTMS--DIRVEINP 55 L ++ + ++ E+++ + V + + +++ K + + VE++ Sbjct: 9 LAEMINVISRERNLPKPAVQAALQEALLKGYERYRRTLLLDSGAQFDEEYFYNFDVELDV 68 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113 E + +V+EVE+ QI+L R+ P +G V + P +FGR+A Sbjct: 69 EEEGFLVLATKMIVDEVESTDHQIALTEVREVAPEAQLGDTVVLDVTPEQNEFGRMAAIQ 128 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRR 167 KQV+ QK+R+ +R EF+D ++ V R E +VI+ + + + + Sbjct: 129 TKQVLSQKLRDQQRKLIQEEFQDLEKTVLQARVLRFERRSVIMAVTSAFGQPEVEAELPK 188 Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + +N R K ++ V RGPQ+++SR +V LF EVPEI + +V++ Sbjct: 189 REQLPNDNYRANATFKVFLKRVADGPHRGPQLVVSRADAGLVVYLFANEVPEIEDEVVRI 248 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ W Sbjct: 249 VAVAREANPPSRQVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRW 308 Query: 280 SPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 SPD AT++ NAL PA V V +D + + V+V ++QLSLAIG+ GQNVRLA++LTGW Sbjct: 309 SPDPATYIANALSPARVDAVRLIDTEERQAHVLVAEDQLSLAIGKEGQNVRLAARLTGWK 368 Query: 339 IDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 IDI + Q + I Sbjct: 369 IDIKDIANYDQEAEDLQLSELQAQKVDEDETAEIEQ 404 >gi|87125354|ref|ZP_01081200.1| NusA antitermination factor [Synechococcus sp. RS9917] gi|86167123|gb|EAQ68384.1| NusA antitermination factor [Synechococcus sp. RS9917] Length = 463 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 135/455 (29%), Positives = 214/455 (47%), Gaps = 43/455 (9%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISDDPFDEEYFSNFDVALDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L +G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSA 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVDVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I E + Q +E E A + + + + + Sbjct: 372 IKNAAEYDQTAEDAVVAELISQRQ----EEEALQRQAEERLAAEQAARAEEDARLRELYP 427 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 E+ A +Y E + ++ + ++ Sbjct: 428 LPED--------AEDYGEDETEAVAEEPADNVQAD 454 >gi|218247498|ref|YP_002372869.1| transcription elongation factor NusA [Cyanothece sp. PCC 8801] gi|257061166|ref|YP_003139054.1| transcription elongation factor NusA [Cyanothece sp. PCC 8802] gi|218167976|gb|ACK66713.1| NusA antitermination factor [Cyanothece sp. PCC 8801] gi|256591332|gb|ACV02219.1| NusA antitermination factor [Cyanothece sp. PCC 8802] Length = 412 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 129/389 (33%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL----------YGTM--SDIRVEINPETGD 59 + + ++ ++ + V + +++ K + + VE++ E Sbjct: 12 MIEEISQLHNLPKSAVQEALREALLKGYERYRRSQNLERQAFHEDYFDNFEVELDTEEEG 71 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQV 117 + ++VE VEN ISL+ ++ +G V + P DFGR+A KQV Sbjct: 72 FRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEVVLDVTPNQKDFGRMAAIQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRDETI 171 ++QK+R+ +R EF + G +++ V R E + IV + ++ + V+ + E + Sbjct: 132 LLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQPEVEAVLPKREQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K + VR RGPQ+++SR+ +V LF +EVPEI IV++ AVS Sbjct: 192 PNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPEIEEEIVRIVAVS 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD Sbjct: 252 REANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 AT++ NAL PA V V+ ++ D V+V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 371 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEI 371 ++ + + Q + + D Sbjct: 372 DTATYQAEVEQKKHAQNQTAIDPLEEDPN 400 >gi|237785727|ref|YP_002906432.1| transcription elongation factor NusA [Corynebacterium kroppenstedtii DSM 44385] gi|237758639|gb|ACR17889.1| N utilization substance protein A [Corynebacterium kroppenstedtii DSM 44385] Length = 328 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 119/346 (34%), Positives = 197/346 (56%), Gaps = 31/346 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ E+ + + + + +A ++ +A G S+ RV+++P+ G +++ +V Sbjct: 5 LSTLRAIERERGVSVEDMTATIAKALLEAWEKSSGGDSEARVDVDPDDGHVAV-----IV 59 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E ++ I ++ P DFGR + ++ ++ +++EAE D+ Sbjct: 60 TERDDEGNVI-----------AEVDET------PSDFGRSFAGTVREAMVARLQEAEADQ 102 Query: 130 QYLEFKDKVGEIISGTVKRVE----YGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y E+ ++++G V+ G VI LG +DG + E I E G R Sbjct: 103 TYEEYASLTSKVVTGIVEADSFARAKGIVIARLGTEAHGNDGTLLPAEQIPGEKYPHGKR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ +V R RG Q+++SRTHP+F+ +LF +EVPE+ +G V+V +++R+ G R+K+AV Sbjct: 163 LKFYVVNVNRGPRGVQIMISRTHPEFVHRLFELEVPEVADGSVEVVSIAREAGHRSKVAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV- 300 S+ ++ G+C+G RG RV+A++ EL EKIDI+ + D ATFV N+L P+ V KV Sbjct: 223 RSTIDGVNAKGSCIGPRGQRVRAIMDELGGEKIDIIDFDEDPATFVGNSLAPSKVLKVEV 282 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 +D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ E Sbjct: 283 VDPEEQVARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIHSDTE 328 >gi|123966905|ref|YP_001011986.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9515] gi|123201271|gb|ABM72879.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9515] Length = 467 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 193/370 (52%), Gaps = 31/370 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV S + +++ K + S+ V + + Sbjct: 12 LIEDISEEKKLPPHVVESALREALLKGYEKYRRTFYIGVKEDPFDEEYFSNFDVGFDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QISL + IG V + P DFGR+A + K Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLNEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIKWSA 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIEYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN 350 + E + Sbjct: 372 VKNSHEYNQE 381 >gi|67923759|ref|ZP_00517223.1| Transcription termination factor NusA [Crocosphaera watsonii WH 8501] gi|67854386|gb|EAM49681.1| Transcription termination factor NusA [Crocosphaera watsonii WH 8501] Length = 424 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 135/395 (34%), Positives = 208/395 (52%), Gaps = 29/395 (7%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPETG 58 Q+ + ++ ++ + V + +++ K Y + VE++ + Sbjct: 11 QMIEEISQRHNLPKSSVQEALKEALIKGYERFRRSQSLDRQQFYDEYFDNFEVELDTDDE 70 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSAKQ 116 + ++VEEVEN ISL+ ++ P ++G V + P DFGR+A KQ Sbjct: 71 GFRILSTKKIVEEVENIDHHISLEEVQEVAPEAELGDEVVLDVTPNQKDFGRMAAIQTKQ 130 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDET 170 V++QK+R+ +R EF + G +++ V R E ++IV + D ++ + E Sbjct: 131 VLLQKLRDQQRKLIQEEFNELEGTVLNARVLRFERQDIIVAVQSAFGQPEVDAILPKREQ 190 Query: 171 ISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAV 229 + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ AV Sbjct: 191 LPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIVAV 250 Query: 230 SRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 SR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD Sbjct: 251 SREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPD 310 Query: 283 SATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AT++ NAL PA V +VV L+ + V+VP++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 311 PATYIANALSPARVDEVVLLNAEERHALVLVPEDQLSLAIGKEGQNVRLAARLTGWKIDI 370 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLL 376 +K E +E + Sbjct: 371 KDIVLYKAEAEKQQLEAETNEEIDYEDEESPLEEM 405 >gi|126657165|ref|ZP_01728331.1| transcription elongation factor NusA [Cyanothece sp. CCY0110] gi|126621436|gb|EAZ92147.1| transcription elongation factor NusA [Cyanothece sp. CCY0110] Length = 432 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 143/427 (33%), Positives = 221/427 (51%), Gaps = 33/427 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56 L Q+ + ++ ++ + V + +++ K Y + VE++ E Sbjct: 9 LTQMIEEISQRHNLPKTAVQEALREALLKGYERFRRSQNLDRQQFYDEYFDNFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEVEN ISL+ ++ +G V + P DFGR+A Sbjct: 69 EEGFRILSTKRIVEEVENTDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF + G +++ V R E ++IV + ++ + ++ R Sbjct: 129 KQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSTFGQPEVEAILPRR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 DI +K E + DE + + VE+ + S++ S + Sbjct: 369 DIKDIAIYKAEAEKRQLEAETREEEYDEEDETELEPMTSA----VEDENFDEESDLDSSD 424 Query: 400 GFDEETA 406 FD T Sbjct: 425 EFDNSTL 431 >gi|113477415|ref|YP_723476.1| transcription elongation factor NusA [Trichodesmium erythraeum IMS101] gi|110168463|gb|ABG53003.1| NusA antitermination factor [Trichodesmium erythraeum IMS101] Length = 426 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 123/394 (31%), Positives = 199/394 (50%), Gaps = 29/394 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS----------LYGTM--SDIRVEINPE 56 L ++ ++ E+++ + V + + +++ K + + +E++ E Sbjct: 9 LKELIGNISKERNLPKQAVQTALREALLKGYERYRRTQRVDGVNFTDDYFENFEIELDIE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEV N I+L+ + + V + P +FGR+A Sbjct: 69 EEGYRVLATKTIVEEVTNPDHHIALQEVLEVASEAQLNDTVFLDVTPEKNEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV+ QK+R+ +R EF+D GE++ V R E +VI+ + + + + Sbjct: 129 KQVLAQKLRDQQRKMIQEEFQDLEGEVLQARVLRFEKQSVILAVSSGFGRLEVEAELPKK 188 Query: 169 ETISRENLRPGDRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K Y+ RGPQ+L+SR +V LF EVPEI + +V++ Sbjct: 189 EQLPNDNYRANATFKVYLKRVCEGSTRGPQLLVSRADAGLVVYLFENEVPEIEDEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 249 AVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD + ++ N+L PA V +V +D + R ++V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPSIYIANSLSPARVDEVRLIDPEERRSHILVSEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIA 373 DI + QA+ E Sbjct: 369 DIKDTNRYDHAEEDSKVAAEVSHRQALAEQEENK 402 >gi|172036756|ref|YP_001803257.1| transcription elongation factor NusA [Cyanothece sp. ATCC 51142] gi|171698210|gb|ACB51191.1| transcription termination factor, N utilization substance protein [Cyanothece sp. ATCC 51142] Length = 428 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPE 56 L Q+ + ++ ++ + V + +++ K Y + VE++ E Sbjct: 9 LTQMIEEISQRHNLPKTAVQEALREALLKGYERFRRSQNLDRQQFYDEYFDNFEVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSA 114 + +VEEVEN ISL+ ++ +G V + P DFGR+A Sbjct: 69 EEGFRILSTKRIVEEVENSDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRD 168 KQV++QK+R+ +R EF + G +++ V R E ++IV + + ++ + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFHELEGTVLNARVLRFERQDIIVAVQSAFGQPEVEAILPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ Sbjct: 189 EQLPNDNYRANASFKVLLKKVREGSHRGPQLLVSRGAAGLVVDMFSVEVPEIEEDIVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +VV L+ + V+V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVVLLNAEERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIIT 343 DI Sbjct: 369 DIKD 372 >gi|227488651|ref|ZP_03918967.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51867] gi|227091545|gb|EEI26857.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51867] Length = 326 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 123/348 (35%), Positives = 190/348 (54%), Gaps = 33/348 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLFRLLE 67 + + EK I + +L+ +A + A S RVEI+P++G +++F Sbjct: 1 MSALRVLEKEKGISVEDLLTTIAQGLHSAYLQAHHLEDESSARVEIDPDSGAVTVF---- 56 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 A +RD +I + P DFGR+ + + +++RE + Sbjct: 57 ----------------AIERDEDGEI--ISEQDETPEDFGRLGASVVRDAVYRRLREVKT 98 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPG 179 DR + E+ G+ +SG V+ N +V LG DG++ E I ENL+ G Sbjct: 99 DRDFDEYAGLEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHG 158 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRVK YI V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+ Sbjct: 159 DRVKCYIVGVGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKI 218 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++ ++ GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V Sbjct: 219 AVHATTKGVNAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGV 278 Query: 300 VL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + DE+ V VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 279 EVLDEENQIARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDES 326 >gi|254526931|ref|ZP_05138983.1| transcription termination factor NusA [Prochlorococcus marinus str. MIT 9202] gi|221538355|gb|EEE40808.1| transcription termination factor NusA [Prochlorococcus marinus str. MIT 9202] Length = 467 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 130/428 (30%), Positives = 208/428 (48%), Gaps = 32/428 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + ++V + + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QISL + IG V + P DFGR+A + K Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDHQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + E + + + L E ++ E+ + Sbjct: 372 VKNSHEYDQEAEDAAVSEL-IIQREDEENLQREAELRLEAEQAERAAEDARLRELYPLPE 430 Query: 401 FDEETAVE 408 DEE E Sbjct: 431 DDEEYGEE 438 >gi|33862048|ref|NP_893609.1| transcription elongation factor NusA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634266|emb|CAE19951.1| N utilization substance protein A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 467 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 135/448 (30%), Positives = 213/448 (47%), Gaps = 34/448 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + +++ K + S+ V + + Sbjct: 12 LIEDISEEKKLPPHVVELALREALLKGYEKYRKTFYIGVKEDPFDEEYFSNFDVGFDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VE VE+ QISL+ + IG V + P DFGR+A + K Sbjct: 72 EGYRILSSKIIVENVESEDHQISLQEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IIT-EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 + E D E + N+ L AE ++ E+ + Sbjct: 372 VKNSYEYDQETEDSAVAELIVQREEEENLQREAEQRLEAE--QAERAAEDKRLRELYPLP 429 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKK 427 DEE E+ L+++ Sbjct: 430 EDDEEYGDELYEEETRSENDQTENLKQE 457 >gi|254422159|ref|ZP_05035877.1| transcription termination factor NusA [Synechococcus sp. PCC 7335] gi|196189648|gb|EDX84612.1| transcription termination factor NusA [Synechococcus sp. PCC 7335] Length = 517 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 129/377 (34%), Positives = 203/377 (53%), Gaps = 28/377 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPET 57 L + D ++ E+++ + V + +++ K + + VE++ + Sbjct: 9 LQAMIDGISQERNLPKSAVEMALQEALLKGYERYRRTQRIDGQFDEEYFDNFYVELDTDD 68 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VE VEN QI L + P G V + P DFGR+A K Sbjct: 69 EGFRVLANKTIVEAVENSDHQIGLAEVQQVAPEALAGDTVVLDVTPEQNDFGRMAAIQTK 128 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF+D G I++ V R E +VI+ + +++ + + + Sbjct: 129 QVLAQKLRDQQRRLIQEEFQDLEGSILNARVLRFERQSVIMAVSSGIGQPDTEAELLKRD 188 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R + + V RGPQ+L+SR+ +V+LF EVPEI + IV++ A Sbjct: 189 QLPNDNYRANATFRVALKRVSEGSHRGPQLLVSRSDASLVVELFSNEVPEIEDEIVRIVA 248 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV +++S +DPVGAC+G RGSR+Q VV ELR EKID++ WSP Sbjct: 249 VAREANPPSRSVGPRTKIAVDTAESDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSP 308 Query: 282 DSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +T++ NAL PA V +V L D + + V+VP++QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 309 DPSTYISNALSPARVDEVRLMDSEGRQAHVLVPEDQLSLAIGKEGQNVRLAARLTGWKID 368 Query: 341 IITEEEDSINRQKDFNE 357 I + + Sbjct: 369 IKDSAKYDYEAENQKMS 385 >gi|297571193|ref|YP_003696967.1| transcription termination factor NusA [Arcanobacterium haemolyticum DSM 20595] gi|296931540|gb|ADH92348.1| transcription termination factor NusA [Arcanobacterium haemolyticum DSM 20595] Length = 325 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 123/340 (36%), Positives = 201/340 (59%), Gaps = 28/340 (8%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 V E ID +V+L+ + +++ A + G + RVE+N TG ++++ Sbjct: 8 LRIVESELGIDLNVLLNAIEEALVHAYNRVPGAVRGARVELNRSTGKVTVW--------- 58 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 A + D + ++ G D P DFGR+A +A+ +I Q++R+AE DR Sbjct: 59 -----------APEVDENNEVIGEFDD--TPNDFGRIATSTARSIIAQRLRDAETDRVLG 105 Query: 133 EFKDKVGEIISGTVK-----RVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 F+ K G+++SG V+ E ++ ++LG + G++R DE ++ E+ + GD +++ + Sbjct: 106 SFQGKKGQLVSGVVEGTAGSNPESRDLFIELGENRGLLRSDEQVASEHFKRGDLLRALVL 165 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 D+ RG + LSR+HP F+ +LF EVPEI +G V++ A++R+ G R K+AV+S+D + Sbjct: 166 DISVGPRGASIRLSRSHPDFVRQLFETEVPEIADGPVEIVALAREAGHRTKVAVWSNDDA 225 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVG 306 + G+ +G G RV+AV EL EKID+V + D A F+ AL PA VT+V + + D+ Sbjct: 226 VAAKGSLIGHNGQRVRAVTAELNGEKIDVVDYDDDPAKFIAAALSPAKVTEVEILNRDMR 285 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + IVP +Q SLAIG+ QNVRLA++LTGW+IDI E + Sbjct: 286 QARAIVPDDQASLAIGKEAQNVRLAAKLTGWSIDIRRESD 325 >gi|87301303|ref|ZP_01084144.1| transcription elongation factor NusA [Synechococcus sp. WH 5701] gi|87284271|gb|EAQ76224.1| transcription elongation factor NusA [Synechococcus sp. WH 5701] Length = 492 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 31/372 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEIN 54 L + + ++ EK + VV + + +++ K + S+ V ++ Sbjct: 9 LQNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVALD 68 Query: 55 PETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQ 112 + + +VEEVE+ QI+L + +G V + P DFGR+A Sbjct: 69 LDEEGYRVLASKIIVEEVESEDHQIALAEVQQVAEDAQVGDTVVLDVTPEKDDFGRMAAA 128 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIR 166 + KQV+ QK+R+ +R EF D +++ V R E +VI+ + + + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELP 188 Query: 167 RDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQ 225 R + + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V+ Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 226 VKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVV 278 + AV+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSVEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 279 WSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 WSPD ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW Sbjct: 309 WSPDPGQYLANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 338 TIDIITEEEDSI 349 IDI + Sbjct: 369 KIDIKNAADYDQ 380 >gi|260434603|ref|ZP_05788573.1| transcription termination factor NusA [Synechococcus sp. WH 8109] gi|260412477|gb|EEX05773.1| transcription termination factor NusA [Synechococcus sp. WH 8109] Length = 483 Score = 249 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 31/370 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYIGISEDPFDEEYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI++ +G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN 350 I E Sbjct: 372 IKNSTEYDQE 381 >gi|157414094|ref|YP_001484960.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9215] gi|157388669|gb|ABV51374.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9215] Length = 467 Score = 249 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 130/428 (30%), Positives = 208/428 (48%), Gaps = 32/428 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + ++V + + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPNIVEAALREALLKGYEKYRRTFYIGVNEDPFDEEYFSNFDVGLDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QISL + IG V + P DFGR+A + K Sbjct: 72 EGYRILSSKIIVEEVESEDHQISLLEVKQVADDAQIGDTVVLDVTPEKEDFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + + + Sbjct: 132 QVLAQKLRDQQRKMIQEEFADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V ++GPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEIARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 VSR+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VSREANPPSRAVGPRTKVAVDSVEQEVDPVGACIGARGARIQQVVNELRGEKIDVIKWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D +++N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 + E + + + L E ++ E+ + Sbjct: 372 VKNSHEYDQEAEDAAVSEL-IIQREEEENLQREAELRLEAEQAERAAEDARLRELYPLPE 430 Query: 401 FDEETAVE 408 DEE E Sbjct: 431 DDEEYGEE 438 >gi|78213595|ref|YP_382374.1| transcription elongation factor NusA [Synechococcus sp. CC9605] gi|78198054|gb|ABB35819.1| NusA antitermination factor [Synechococcus sp. CC9605] Length = 481 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 31/370 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI++ +G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN 350 I E Sbjct: 372 IKNSTEYDQE 381 >gi|33241096|ref|NP_876038.1| transcription elongation factor NusA [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238625|gb|AAQ00691.1| Transcription elongation factor NusA [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 472 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 31/369 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ + ++ + Sbjct: 12 LIEDISEEKKLPAQVVETALREALLKGYERYRKTLYLGINENPFEEEYFSNFDIGLDLDQ 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEV++ QI+L G V + P +FGR+A + K Sbjct: 72 EGYRVLASKIIVEEVDSEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEEFGRMAASTTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLSQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWST 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPIQYICNSLSPARVENVRLVDPDGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSI 349 I +E Sbjct: 372 IKNSQEYDQ 380 >gi|227543254|ref|ZP_03973303.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51866] gi|227181063|gb|EEI62035.1| transcription elongation factor NusA [Corynebacterium glucuronolyticum ATCC 51866] Length = 326 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 123/348 (35%), Positives = 191/348 (54%), Gaps = 33/348 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLFRLLE 67 + + EK I + +L+ +A + +A S RVEI+P++G +++F Sbjct: 1 MSALRVLEKEKGISVEDLLTTIAQGLHRAYLQAHHLEDESSARVEIDPDSGAVTVF---- 56 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 A +RD +I + P DFGR+ + + +++RE + Sbjct: 57 ----------------AIERDEDGEI--ISEQDETPEDFGRLGASVVRDAVYRRLREVKT 98 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPG 179 DR + E+ G+ +SG V+ N +V LG DG++ E I ENL+ G Sbjct: 99 DRDFDEYAGLEGKCVSGVVQADARANERGIAVVRLGTELQGQDGILLPGEQIPGENLKHG 158 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 DRVK YI V + + Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K+ Sbjct: 159 DRVKCYIVGVGKGRGSLQISLSRTHPELVRRLFELEVPEVESGDVEIVGIAREAGHRSKI 218 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV ++ ++ GAC+G +G RV V+ ELR EKIDI+ + + AT+V NAL P+ V V Sbjct: 219 AVHATTKGVNAKGACIGPKGQRVNNVMRELRGEKIDIIDYDENPATYVGNALAPSKVVGV 278 Query: 300 VL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 + DE+ V VP QLSLAIG+ GQN RLA++LTGW IDI ++E Sbjct: 279 EVLDEENQIARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDES 326 >gi|124022125|ref|YP_001016432.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9303] gi|123962411|gb|ABM77167.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9303] Length = 484 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 133/409 (32%), Positives = 203/409 (49%), Gaps = 32/409 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V + + Sbjct: 12 LIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEEYFSNFDVGLELDD 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L+ IG V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388 I +E + + + L AE EE A Sbjct: 372 IKNSQEYDQASEDTTVAELISQREEEEALQRDAESRLAAEQATRAEEDA 420 >gi|116071183|ref|ZP_01468452.1| transcription elongation factor NusA [Synechococcus sp. BL107] gi|116066588|gb|EAU72345.1| transcription elongation factor NusA [Synechococcus sp. BL107] Length = 492 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 133/429 (31%), Positives = 206/429 (48%), Gaps = 34/429 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI+L G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E ++I+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IIT-EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 I E D E + + + L E ++ E+ + Sbjct: 372 IKNSTEYDQAAEDAVVAELISQREEEEALQQEAEERLAVEQ--AARAEEDARLRELYPLP 429 Query: 400 GFDEETAVE 408 DE+ E Sbjct: 430 EDDEDYVDE 438 >gi|148240413|ref|YP_001225800.1| transcription elongation factor NusA [Synechococcus sp. WH 7803] gi|147848952|emb|CAK24503.1| Transcription elongation factor NusA [Synechococcus sp. WH 7803] Length = 469 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 131/456 (28%), Positives = 206/456 (45%), Gaps = 35/456 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGVGEDPFDEEYFSNFDVALDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI+L G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVADDAQSGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I E + + E E A + + + + + Sbjct: 372 IKNASEYDQASEDAVVAELIAQRE----QEEALQREAEERLAAEQAARAEEDARLRELYP 427 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 E+ A + + SE Sbjct: 428 LPEDEEEYGDETAEDVVMSEGEAADTSEVTPESSES 463 >gi|33863793|ref|NP_895353.1| transcription elongation factor NusA [Prochlorococcus marinus str. MIT 9313] gi|33635376|emb|CAE21701.1| N utilization substance protein A [Prochlorococcus marinus str. MIT 9313] Length = 482 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 134/409 (32%), Positives = 203/409 (49%), Gaps = 32/409 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V + E Sbjct: 12 LIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGISEDPFEEEYFSNFDVGLELED 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L+ IG V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALQEVMQVAEDAQIGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WSP Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSP 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388 I +E + + + L AE EE A Sbjct: 372 IKNSQEYDQASEDTTVAELISQREEEEALQRDAEARLAAEQATRAEEDA 420 >gi|88807314|ref|ZP_01122826.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] gi|88788528|gb|EAR19683.1| transcription elongation factor NusA [Synechococcus sp. WH 7805] Length = 470 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 209/457 (45%), Gaps = 36/457 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPQVVEAALREALLKGYERYRRTLYLGLGEDPFDEEYFSNFDVALDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI+L G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVADDAQAGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSA 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVDVVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IIT----EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIA 396 I ++ + + + E A + L + Sbjct: 372 IKNASEYDQASEDAVVSELISQREQEEALQREAEERIAAEQAARAEEDARLRELYPLPED 431 Query: 397 SIEGFDEETAV-EIQGRAREYLEGIDITLQKKIRELG 432 E DE E+ A + + E+G Sbjct: 432 EEEYGDEAVDDVEMPEGATDEASEPTPESDESSNEVG 468 >gi|227549050|ref|ZP_03979099.1| transcription elongation factor NusA [Corynebacterium lipophiloflavum DSM 44291] gi|227078904|gb|EEI16867.1| transcription elongation factor NusA [Corynebacterium lipophiloflavum DSM 44291] Length = 341 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 197/358 (55%), Gaps = 35/358 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSL----YGTMSDIRVEINPETGDISLFRL 65 L A++ E ID D +L +A ++ R RVEI+ +TGD+S+ Sbjct: 5 LNALKAISTEHGIDVDDLLETIAGALLSVYRDYREAPPAEGHRARVEIDADTGDVSVL-- 62 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V EV++ +S P++F R+ + I ++VREA Sbjct: 63 ---VSEVDDDGAVVS-----------------EYDDTPVNFSRIGAPTVLDAIKKRVREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE----YGNVIVDLGN----SDGVIRRDETISRENLR 177 E R + E+ + G+++SG V+R G ++V+LG DG++ E I E L+ Sbjct: 103 EAGRVFSEYSEFEGQVVSGVVQRDANAEARGLIVVELGTEADPQDGILLPAEQIPGEKLK 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDR+K+++ V + +R QV LSRTHP+ + LF +EVPE+ +G V++ A++R+ G R+ Sbjct: 163 HGDRIKAFVVGVNKGERKVQVNLSRTHPELVRGLFALEVPEVADGTVEIVAIAREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV + ++ GAC+G RG+RV ++ +L EKIDI+ +S D A +V N+L P+ V Sbjct: 223 KVAVQAKVKGVNAKGACIGPRGARVTNIMQQLGGEKIDIIEYSADPAKYVGNSLAPSKVV 282 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ D+ + Sbjct: 283 RVEVLDLEGQAARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAADAAADTEQ 340 >gi|33865134|ref|NP_896693.1| transcription elongation factor NusA [Synechococcus sp. WH 8102] gi|33638818|emb|CAE07115.1| N utilization substance protein A [Synechococcus sp. WH 8102] Length = 475 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 136/456 (29%), Positives = 216/456 (47%), Gaps = 34/456 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIDDISEEKKLPPQVVEAALREALLKGYERYRRTMYLGISEDPFDEEYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L+ G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESEDHQIALQEVMQVADDAQEGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW +D Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKLD 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEG 400 I E + + + ++ A +A ++ E+ + Sbjct: 372 IKNSTEYDQSAEDAVVAELISQREQEEALQMEAEERLAAE-QAARAEEDARLRELYPLPE 430 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEE 436 DE+ + E + ++ E SEE Sbjct: 431 DDEDYVEG--DQLGESEQTEATASEEMPGEEPTSEE 464 >gi|332707468|ref|ZP_08427516.1| NusA antitermination factor [Lyngbya majuscula 3L] gi|332353765|gb|EGJ33257.1| NusA antitermination factor [Lyngbya majuscula 3L] Length = 369 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 114/350 (32%), Positives = 184/350 (52%), Gaps = 30/350 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--SDIRVEINP 55 L + + ++ ++ R V + +++ K + + V+++ Sbjct: 9 LKAMIEEISQSHNLPRSAVQQALREALLKGYERYRRSQRLDQRFHFDEEYFDNFEVDLDI 68 Query: 56 ETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQS 113 E + +VEEV+N QISLK ++ +G V + P +FGR+A Sbjct: 69 EEEGFRVLSTKTIVEEVQNSDHQISLKEVQEVASEAQLGDSVVLDVTPDQGEFGRMAAIQ 128 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRR 167 KQV+ QK+R+ +R EF+D G ++ R E +VI+ L + + + Sbjct: 129 TKQVLSQKLRDQQRKLIKEEFQDLEGTVLQSRSLRFEQQSVIMALSSGFGRPEVEAELPK 188 Query: 168 DETISRENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 E + +N R K Y+ VR RGPQ+++SR +V LF EVPEI + +V++ Sbjct: 189 REQLPNDNYRINSTFKVYLKKVREGPHRGPQLVVSRAAAGLVVDLFSNEVPEIDDEVVRI 248 Query: 227 KAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 AV+R+ G R K+AV + + +DPVGAC+G RGSR+Q VV ELR EKID++ W Sbjct: 249 VAVAREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQVVVNELRGEKIDVIRW 308 Query: 280 SPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 SPD +T++ NAL PA V +V +++ + + V+V ++QLSLAIG+ GQN Sbjct: 309 SPDPSTYIANALSPAQVDQVLLVNPEERQAHVLVAEDQLSLAIGKEGQNS 358 >gi|289809601|ref|ZP_06540230.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 258 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 101/275 (36%), Positives = 157/275 (57%), Gaps = 18/275 (6%) Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA V +V Sbjct: 1 MKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 60 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 +DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Q + + + Sbjct: 61 VDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIE 120 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + +++DE A +LV EGF+ +EELA V + E+ I+G DE T ++ RA+ L + Sbjct: 121 IFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATL 180 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 + + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 181 AQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIE------ 234 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ +I+ AR + W E Sbjct: 235 -----------GLTDEKAGELIMAAR-NICWFGDE 257 >gi|47093946|ref|ZP_00231683.1| N utilization substance protein A [Listeria monocytogenes str. 4b H7858] gi|47017684|gb|EAL08480.1| N utilization substance protein A [Listeria monocytogenes str. 4b H7858] Length = 248 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 155/245 (63%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VE+V + +IS++ A +P G VV + P DFGR+A Q+AKQV+ Q+VREAER Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y+ Sbjct: 124 GIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLT 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 184 KVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTANEE 243 Query: 248 IDPVG 252 +DPVG Sbjct: 244 VDPVG 248 >gi|116073742|ref|ZP_01471004.1| transcription elongation factor NusA [Synechococcus sp. RS9916] gi|116069047|gb|EAU74799.1| transcription elongation factor NusA [Synechococcus sp. RS9916] Length = 493 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 133/460 (28%), Positives = 214/460 (46%), Gaps = 34/460 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV S + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLPPQVVESALREALLKGYERYRKTLYLGINDDPFDEEYFSNFDVALDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI+L +G V + P +FGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESDDHQIALAEVMQVADDAQVGDTVVLDVTPEKEEFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELACVKISEIASIE 399 I +E + + + L AE ++ E+ + Sbjct: 372 IKNSQEYDQASEDAVVAELISQREEEEALQREAEERLAAE--QAARAEEDARLRELYPLP 429 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439 DE+ E E ++ + +++ + Sbjct: 430 EDDEDYVEEGSEIDVEAVDAGEESVEGDQPAAEAETSVED 469 >gi|76496360|gb|ABA43691.1| NusA [Acholeplasma palmae] Length = 363 Score = 246 bits (627), Expect = 9e-63, Method: Composition-based stats. Identities = 107/363 (29%), Positives = 184/363 (50%), Gaps = 17/363 (4%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S + +AVA E+ +++D VL + + +G RVEI + +I Sbjct: 1 MISKD---FFNTIEAVADERGLNKDQVLEAFEKGLIAGCKKAHGV-RSCRVEIKEDKSEI 56 Query: 61 SLFRLLEVVEE---VEN--------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRV 109 L++ V++E E+ I+++ A++ + G ++ + P DF Sbjct: 57 LLYKQYYVLDEDTLEEDMTSNPLNKEYTFITVEDAKEMKTRVKPGQLIEIKVDPKDFNLY 116 Query: 110 AVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRD 168 A++ K +++ +++ Y FK E+++ V V+ ++L ++ + Sbjct: 117 AIKDFKNRFNEELTNKQKETIYNHFKAVEHEMVTARVTDVDDNYYKLELEKEMTTLLPKK 176 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 E + + DR+K YI +V+ + P+V +SR + +L VPEI GI+ + Sbjct: 177 EALPNDVFHVNDRIKVYITEVQSTTKWPKVFVSRVQNGLITRLLEELVPEIKEGIISIMG 236 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 +SRD G R+K+ V S D +DP+GACVG G R++ +V + EKID+ WS + + Sbjct: 237 ISRDAGDRSKIGVRSEDPKVDPIGACVGEGGQRIREIVKAISGEKIDLFRWSDNEQELIA 296 Query: 289 NALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 NAL+PA V V ++ IVP +QLSLAIG+ GQNV+LA Q +GW+IDI +E + Sbjct: 297 NALQPAKVVAVTKVNPKEKSALAIVPDDQLSLAIGKLGQNVKLAVQASGWSIDIKSETQA 356 Query: 348 SIN 350 Sbjct: 357 QQE 359 >gi|308233945|ref|ZP_07664682.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] gi|328943957|ref|ZP_08241422.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] gi|327491926|gb|EGF23700.1| transcription termination factor NusA [Atopobium vaginae DSM 15829] Length = 414 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 199/368 (54%), Gaps = 45/368 (12%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +++N +E L D + + +D ++ + ++ K + RV I+ TG + Sbjct: 1 MASNMVEAL--ID-ICQKTHLDELYIVDRLEQTLAKNYADILHLEHGARVTIDRVTGKVY 57 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIG---GVVSDPLPPMDFGRVAVQSAKQVI 118 ++ ++ +P + G + P + R+ VQ KQ + Sbjct: 58 VY------------------ELIPKGEPDPETGEYQDFDERDVTPKEASRLVVQHTKQEL 99 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------R 167 + +R A R + + EF +VG++I+GTV + I+ + + + R Sbjct: 100 AEIIRSAGRQQIFEEFSKRVGDLITGTVLQTTSDFAIIKIRDGVEAELPYFDPHRYPDER 159 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQ----------VLLSRTHPQFMVKLFHMEVP 217 +E + E+ R+++ I +VR Q +++SRTHP + +LF +EVP Sbjct: 160 NERPANEHYAHNQRLRALIVEVRDPHANQQQIRGERQRPSIVVSRTHPDLISRLFELEVP 219 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EI++G+V + +V+R+PG R+K+AV S+D +DPVGACVG +GSRV+ VV+ELR E++D+V Sbjct: 220 EIFDGVVSIASVAREPGIRSKIAVSSTDPHLDPVGACVGPKGSRVRTVVSELRGERVDVV 279 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 +WS D A V NAL PA V++V++D++ VIVP +QLSLAIG+ GQN RLA++LTG Sbjct: 280 MWSDDPAINVANALSPAKVSRVLVDKENNYATVIVPDDQLSLAIGKEGQNARLAARLTGM 339 Query: 338 TIDIITEE 345 IDI E Sbjct: 340 HIDIKNET 347 >gi|78184171|ref|YP_376606.1| transcription elongation factor NusA [Synechococcus sp. CC9902] gi|78168465|gb|ABB25562.1| NusA antitermination factor [Synechococcus sp. CC9902] Length = 485 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 132/429 (30%), Positives = 205/429 (47%), Gaps = 34/429 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + D ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIDDISEEKKLAPQVVEAALREALLKGYERYRRTLYIGISEDPFDEDYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI+L G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQSGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E ++I+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPGQYIANSLSPARVEMVRLVDPAGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSIN-RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 I E E + + + L E ++ E+ + Sbjct: 372 IKNSTEYDQPAEDAVVAELISQREEEEALQQEAEERLAVEQ--AARAEEDARLRELYPLP 429 Query: 400 GFDEETAVE 408 DE+ E Sbjct: 430 EDDEDYVEE 438 >gi|170077376|ref|YP_001734014.1| transcription elongation factor NusA [Synechococcus sp. PCC 7002] gi|169885045|gb|ACA98758.1| transcription termination factor NusA [Synechococcus sp. PCC 7002] Length = 420 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 200/371 (53%), Gaps = 30/371 (8%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM--SDIRVEINPET 57 + + ++ ++ + V + +++ K + + VE++ E Sbjct: 11 ALVEEISDRHNLPQSAVHEALREALLKGYERYRRSLTLNQATPFAEDYFDNFEVELDLED 70 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVEN QI+L+ ++ +G V + P DFGR+A K Sbjct: 71 EGFRVLATKVIVEEVENSDHQIALQEVQEVANEAQLGDSVILDVTPEQSDFGRMAAIQTK 130 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDE 169 QV++QK+R+ +R EF++ GE++ V R E V++ + ++ + R E Sbjct: 131 QVLLQKLRDQQRKLVQEEFQELEGEVLQARVLRFERNFVVMAVTSAFGQPETEAELPRRE 190 Query: 170 TISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K Y+ V+ RGPQ+++SR +V LF EVPEI IV++ A Sbjct: 191 QLPNDNYRANTTYKVYLKHVKEGSHRGPQLVVSRAAADLVVYLFANEVPEIEEEIVRIVA 250 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSP Sbjct: 251 VAREANPPGRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSP 310 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D AT++ NAL PA V V+ +D + + V+VP+ QLSLAIG+ GQNVRLA++LTGW ID Sbjct: 311 DPATYIANALSPARVDGVILVDAEERQATVLVPENQLSLAIGKEGQNVRLAARLTGWKID 370 Query: 341 IITEEEDSINR 351 I + + Sbjct: 371 IKDSAKYEAEQ 381 >gi|13507893|ref|NP_109842.1| transcription elongation factor NusA [Mycoplasma pneumoniae M129] gi|2499338|sp|P75591|NUSA_MYCPN RecName: Full=Transcription elongation protein nusA gi|1674384|gb|AAB96325.1| N-utilization substance protein A-like protein [Mycoplasma pneumoniae M129] Length = 540 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 110/445 (24%), Positives = 215/445 (48%), Gaps = 16/445 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LLQ+ VA K++ D V+ + ++ + + ++ V I+ G + + +L +V Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLNY-VNVEVNIDFNKGLMQIEQLFDV 70 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ + ++ L A+ +P++++GGV+ P+ D + + QK+ E Sbjct: 71 VDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQKINET 130 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDGVIRRDETISRENLRPG 179 +F ++VG++I V+ ++ IV+L + G + + E E L G Sbjct: 131 AFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNLETTKGYMPKRELSKGEKLDIG 190 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + I +++++ + LSR+ + + L + PEI NG +++K + R PG+++K+ Sbjct: 191 KKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPGTKSKV 250 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S D +DP+ A +G +G R++ + E E IDIV+W+ D F++NA+ PA V Sbjct: 251 AVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVGY 310 Query: 300 VL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + DE IE++VP Q++ G +G N+RL S LTGW+ + E+D+ + +F Sbjct: 311 NILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQGIEFT 370 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + + + ++LA K+ + D+E V++ +A E Sbjct: 371 RVNFQPQGIFGIKKRR-DKISNNPRNNNQQLASDKVFYTSKANVVDDEIIVDLAKQA-EA 428 Query: 417 LEGIDITLQKKIRELGVSEELCSIP 441 I + EL + +EL ++ Sbjct: 429 KRVKQIKQEATKPELQLQQEL-NLE 452 >gi|268679068|ref|YP_003303499.1| transcription termination factor NusA [Sulfurospirillum deleyianum DSM 6946] gi|268617099|gb|ACZ11464.1| transcription termination factor NusA [Sulfurospirillum deleyianum DSM 6946] Length = 374 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 196/356 (55%), Gaps = 9/356 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ I +++A+EK +D + V + + ++ K A+ +YG + EI+ T + L++ + V Sbjct: 4 IVDIIESIAHEKGLDINEVRNTVTMALVKTAKKIYGAEYEYGAEIDSATKTLKLYQKVIV 63 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + I++K A++ DP I+IG ++ LP + GR A + ++ + ++ Sbjct: 64 VSPDDERLLDGNENFIAIKEAKEVDPEIEIGDELTYELPLDNLGRTAAATLQRELEYHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + +++ VG+ + G+V RV+ N +++ V+ R I E + G+ V Sbjct: 124 RLLEHNIFDKYQKMVGKTVFGSVVRVDNDENTYIEIDEIRAVLPRKNRIKGEKFKVGNVV 183 Query: 183 KSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 KS I V + +G V LSRT P+F+ L +EVPEI +G++++ +R PG RAK+++ Sbjct: 184 KSVIRKVLIDKAQGMYVELSRTSPKFLESLLELEVPEIKDGLIKIMGSARIPGERAKISL 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S +ID VGA VG +G+R+ AV EL +E ID + +S F+ AL PAI++ V + Sbjct: 244 VSFHPNIDAVGATVGTKGARINAVSKELHNENIDCIEFSSVPEIFISRALSPAIISNVKI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + V +P +Q S AIG+ G N+RL S LTG+ I+++ + + + +E Sbjct: 304 --QNNKAIVTLPSDQKSKAIGKNGINIRLTSMLTGFEIELVESGSGTSSTENTSDE 357 >gi|26553563|ref|NP_757497.1| transcription elongation factor NusA [Mycoplasma penetrans HF-2] gi|26453569|dbj|BAC43901.1| N-utilization substance protein A [Mycoplasma penetrans HF-2] Length = 597 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 187/346 (54%), Gaps = 10/346 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L+ D +A EK ++ +++++ +++K+ DI V ++ I LF V Sbjct: 6 FLENLDKIAKEKDTSKENIVNILKTALEKSYLKE-NPDLDIEVVVDLNKESIKLFEKRVV 64 Query: 69 VEEVENY---TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V++ E+ +I++ A++ S +G VS + F R Q++ + + Sbjct: 65 VDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLNDI 124 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + Y E+KDKVG II V++V+ V V+LG++ GV+ R E I E L+PG Sbjct: 125 SNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLGSTKGVVLRSEQIPGEELQPGQSYLFL 184 Query: 186 IYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 I +V+ ++ +G ++LSR + L E+ EI +GI+++K +SR G + K+A+ S Sbjct: 185 IKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAILSR 244 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 +D VG VG +G R++ + + L +E+ID++++ D F++NA P + V + +D Sbjct: 245 VPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEITDD 304 Query: 305 V-----GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + ++ P+E L IG+ G NVRL S+LTGW+IDII+E+ Sbjct: 305 EDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIISEK 350 >gi|284929277|ref|YP_003421799.1| transcription termination factor NusA [cyanobacterium UCYN-A] gi|284809721|gb|ADB95418.1| transcription termination factor NusA [cyanobacterium UCYN-A] Length = 387 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 198/361 (54%), Gaps = 29/361 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL-----------YGTM-SDIRVEINPETGD 59 + ++ ++ + V + +++ K Y + VE++ E Sbjct: 12 MIGEISQRHNLPKPAVQEALREALLKGYERFRRSQNLDRQPFYDEYFDNFEVELDTEEEG 71 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQV 117 + +++E VEN ISL+ ++ +G V + P DFGR+A KQV Sbjct: 72 FRILSTKKIMENVENIDHHISLQEVQEVASEAQLGDEVVLDVTPEQKDFGRMAAIQTKQV 131 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRDETI 171 ++QK+R+ +R EF++ G +++ V R E ++IV + ++ + +I + E + Sbjct: 132 LLQKLRDQQRKLIQEEFQELEGTVLNARVLRFERQDIIVAVQSTFGQPEVEAIIPKQEQL 191 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R K + VR RGPQ+L+SR +V +F +EVPEI IV++ AVS Sbjct: 192 PNDNYRANSSFKILLKKVREGSHRGPQLLVSRAAAGLVVDMFSIEVPEIEEDIVRIVAVS 251 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WSPD Sbjct: 252 REANPPSRYVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311 Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 AT++ NAL PA + +V+ + D ++V ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 312 ATYIANALSPARIDEVILISPDERHALILVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 371 Query: 343 T 343 Sbjct: 372 N 372 >gi|72382861|ref|YP_292216.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL2A] gi|72002711|gb|AAZ58513.1| transcription termination factor NusA [Prochlorococcus marinus str. NATL2A] Length = 497 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 130/470 (27%), Positives = 224/470 (47%), Gaps = 46/470 (9%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIEDISEEKKLPSQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VE+VE+ QI++ +G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEDVESDDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIRWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPVQYICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IIT--------------EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 I E ++ + ++A + E + E+ Sbjct: 372 IKNSQEYDQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEEDARLRELYPLPED 431 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREY-LEGIDITLQKKIRELGVSE 435 + E+++I+ + E+ + + + ++ D ++ + + + Sbjct: 432 EEDFQNEELSNIDSNETESESDFESSEIDSNIDTDDAETEESDIDETIED 481 >gi|25028436|ref|NP_738490.1| transcription elongation factor NusA [Corynebacterium efficiens YS-314] gi|23493721|dbj|BAC18690.1| putative transcriptional termination/antitermination factor [Corynebacterium efficiens YS-314] Length = 359 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 125/347 (36%), Positives = 199/347 (57%), Gaps = 35/347 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLYGTMSDIRVEINPETGDISLFRLL 66 Q A+ EK I + ++ +A+++ + S S RV+I+ TG +++ Sbjct: 33 QALRAIEKEKGIRVEDMIRTIANALLHSYLDNRESDVPESSKARVDIDVSTGAVAV---- 88 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V E ++ S P +FGRV+ ++ + I++++REAE Sbjct: 89 -IVTEFDDEGTISS-----------------EYDDTPSNFGRVSARAVRDAIVRRLREAE 130 Query: 127 RDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRP 178 +R + + + G ++SG V+ E G V+V LG + DG++ E I E L+ Sbjct: 131 AERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQLGTETDSQDGILLPAEQIPGEKLKH 190 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRVKSY+ V + G Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+K Sbjct: 191 GDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRSK 250 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++ +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V Sbjct: 251 VAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSDDPATFVGNALAPSKVVS 310 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + D + +V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 311 VEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 357 >gi|255323481|ref|ZP_05364612.1| transcription termination factor NusA [Campylobacter showae RM3277] gi|255299518|gb|EET78804.1| transcription termination factor NusA [Campylobacter showae RM3277] Length = 366 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 189/340 (55%), Gaps = 8/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + V Sbjct: 4 IADIIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDNATKTLHLYQKITV 63 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VE+ E+ +S+ A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 64 VEDGDERLAEDNEHFLSISEAKKVDSGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ + +++D VG ++ G+V RV+ N +++ V+ R I E +PGD V Sbjct: 124 RLMEEKIFQKYQDMVGHMVFGSVTRVDSDENTFIEIDELRAVMPRKNRIKGEKFKPGDVV 183 Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+ Sbjct: 184 KAVIKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVAL 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V + Sbjct: 244 VATSPNVDPVGATVGTKGVRINAVTKELNGENIDAIEYSAEPAILITRAMAPAIISSVKI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ED + +V + Q S AIG+ G N+RLAS LTG I++ Sbjct: 304 GEDNKAVVSLVTE-QKSKAIGKSGINIRLASMLTGHEIEL 342 >gi|124026598|ref|YP_001015713.1| transcription elongation factor NusA [Prochlorococcus marinus str. NATL1A] gi|123961666|gb|ABM76449.1| N utilization substance protein A [Prochlorococcus marinus str. NATL1A] Length = 497 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 131/409 (32%), Positives = 203/409 (49%), Gaps = 32/409 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V ++ E Sbjct: 12 LIEDISEEKKLPSQVVEAALREALLKGYERYRRTLYLGISEDPFEEDYFSNFDVGLDLEE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +VEEVE+ QI++ +G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVEEVESDDHQIAIAEVMQVADDAQVGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E +VI+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR++ +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSETPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RG+R+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELRGEKIDVIRWSS 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPVQYICNSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388 I +E + + + L AE A EE A Sbjct: 372 IKNSQEYDQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEEDA 420 >gi|166364176|ref|YP_001656449.1| transcription elongation factor NusA [Microcystis aeruginosa NIES-843] gi|166086549|dbj|BAG01257.1| transcription termination factor [Microcystis aeruginosa NIES-843] Length = 398 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 127/387 (32%), Positives = 202/387 (52%), Gaps = 30/387 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--S 47 M + N L + + ++ ++ ++ V + +++ K + + Sbjct: 1 MATVNLPGLKIMLEEISQRHNLPKNAVQEALREALIKGYERYRRAQSLEKAAQFHEDYFN 60 Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MD 105 + VE++ E + +VEEV N I LK ++ +G V + P + Sbjct: 61 NFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEAQLGDEVVLDVTPDQKE 120 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS---- 161 FGR+A KQV++QK+R+ +R EF+D G ++ V R E IV + ++ Sbjct: 121 FGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRFERQAAIVMVQSTYGQP 180 Query: 162 --DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 + + + E + +N R K + V RGPQ+++SR +V LF EVPE Sbjct: 181 EVEAELPKREQLPNDNYRANATFKVLLKKVLEGSHRGPQLIVSRAAAGLVVYLFANEVPE 240 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I IV++ AV+R+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR Sbjct: 241 IEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 300 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA + +V + + + V+V ++QLSLAIG+ GQNVRL Sbjct: 301 EKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQDQLSLAIGKEGQNVRL 360 Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNE 357 A++LTGW IDI ++ +E Sbjct: 361 AARLTGWKIDIKDIVLYKGEQEVKTDE 387 >gi|152993777|ref|YP_001359498.1| transcription elongation factor NusA [Sulfurovum sp. NBC37-1] gi|151425638|dbj|BAF73141.1| transcription termination factor NusA [Sulfurovum sp. NBC37-1] Length = 387 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 197/364 (54%), Gaps = 18/364 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I DA+A+EK+I R+ L +++ A+ L S+ V I+ +T S+ +++ + Sbjct: 4 ILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVITI 63 Query: 69 V-EEVENYTCQ---------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 V ++ E + + L A++ D S++IG +++ D+GR A Sbjct: 64 VADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTASA 123 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETI 171 + + + ++ + ++++KVG ++ GTV R++ N V++G G++ I Sbjct: 124 NLFRELEYHIQRRIEQDLFEKYREKVGTVMLGTVNRIDADDNTHVEIGELKGILTLRNRI 183 Query: 172 SRENLRPGDRVKSYIYDVRREQRGP-QVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 E + GD +++ + V + + + L+RT P+F+ L EVPEI +G+V++ + Sbjct: 184 KGEKFKRGDTIRALLRYVSVDPQYGLFLELTRTSPKFLEALMASEVPEIADGVVEIVNAA 243 Query: 231 RDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 R PG RAK+A+ + ++DP+GA VG++G R+ AV EL E ID + +SP F+ A Sbjct: 244 RIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFITRA 303 Query: 291 LRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 L PAI + +D+D + V + +Q + AIG+ G N+RLAS LTG+TI++ E + Sbjct: 304 LSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIELNEVEGVTER 363 Query: 351 RQKD 354 + + Sbjct: 364 QPES 367 >gi|113954345|ref|YP_731568.1| transcription elongation factor NusA [Synechococcus sp. CC9311] gi|113881696|gb|ABI46654.1| transcription termination factor NusA [Synechococcus sp. CC9311] Length = 501 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 129/409 (31%), Positives = 200/409 (48%), Gaps = 32/409 (7%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSL------------YGTM--SDIRVEINPET 57 + + ++ EK + VV + + +++ K + S+ V ++ + Sbjct: 12 LIEDISEEKKLAPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVALDLDE 71 Query: 58 GDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAK 115 + +V+EVE+ QI+L G V + P DFGR+A + K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDE 169 QV+ QK+R+ +R EF D +++ V R E ++I+ + + + R + Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191 Query: 170 TISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 + +N R K ++ +V +RGPQ+ +SR + +V LF EVPEI G V++ A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 229 VSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 V+R+ G R K+AV S + +DPVGAC+G RGSR+Q VV ELR EKID++ WS Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 282 DSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D + ++ N+L PA V V +D + V+VP +QLSLAIGR GQNVRLA++LTGW ID Sbjct: 312 DPSQYIANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 341 IITEEEDSINRQKDFNERTQFFMQAIN-VDEIIAHLLVAEGFADVEELA 388 I E + + + L E A EE A Sbjct: 372 IKNSTEYDQTAEDAVVSELISQREEEEALQREAEERLAIEQAARAEEDA 420 >gi|16329287|ref|NP_440015.1| transcription elongation factor NusA [Synechocystis sp. PCC 6803] gi|1651767|dbj|BAA16695.1| N utilization substance protein [Synechocystis sp. PCC 6803] Length = 458 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 198/375 (52%), Gaps = 28/375 (7%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARS---------LYGTM--SDIRVEINPETGD 59 + ++ ++ V + +++ K + ++ VE++ E Sbjct: 11 AMISEISKRNNLPTTAVEEALREALLKGYERFRRSQLMGHQFPEEYFNNFEVELDTEEEG 70 Query: 60 ISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--DFGRVAVQSAKQV 117 + +VEEVEN QISLK + +G V + P DFGR+A KQV Sbjct: 71 FRVLSTKRIVEEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQKDFGRMAAIQTKQV 130 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------NSDGVIRRDETI 171 ++QK+R+ +R EF+D G +++ R E ++IV + + + + E + Sbjct: 131 LLQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKREQL 190 Query: 172 SRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +N R + Y+ VR QRGPQ+++SR +V LF +EVPEI +V++ AV+ Sbjct: 191 PNDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVAVA 250 Query: 231 RDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDS 283 R+ G R K+AV + + +DPVGAC+G RGSR+ AVV ELR EKID++ WSPD Sbjct: 251 REAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSPDP 310 Query: 284 ATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 AT++ AL PA V +V + + VIV ++QLSLAIG+ GQNVRLA++LTGW IDI Sbjct: 311 ATYIAQALSPARVDQVYLIHAEERHALVIVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 370 Query: 343 TEEEDSINRQKDFNE 357 E + +++ Sbjct: 371 DPETYARDKEAIEQS 385 >gi|159027908|emb|CAO89715.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 398 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 128/387 (33%), Positives = 203/387 (52%), Gaps = 30/387 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARS-----------LYGTM--S 47 M + N L + + ++ ++ ++ V + +++ K + + Sbjct: 1 MATVNLPGLKIMLEEISQRHNLPKNAVQEALREALIKGYERYRRSQSLEKAAQFHEDYFN 60 Query: 48 DIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPM--D 105 + VE++ E + +VEEV N I LK ++ +G V + P + Sbjct: 61 NFDVELDVEEEGFRILSTKTIVEEVTNPDHHIGLKEVQEVADEAQLGDEVVLDVTPDQRE 120 Query: 106 FGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS---- 161 FGR+A KQV++QK+R+ +R EF+D G ++ V R E IV + ++ Sbjct: 121 FGRMAAIQTKQVLLQKLRDNQRKLIQEEFQDLEGTVLQARVVRFERQAAIVMVQSTYGQP 180 Query: 162 --DGVIRRDETISRENLRPGDRVKSYIYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPE 218 + + + E + +N R K + V QRGPQ+++SR +V LF EVPE Sbjct: 181 EVEAELPKREQLPNDNYRANATFKVLLKKVLEGSQRGPQLIVSRAAAGLVVYLFANEVPE 240 Query: 219 IYNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 I IV++ AV+R+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR Sbjct: 241 IEEEIVRIVAVAREANPPSRHVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRG 300 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 EKID++ WSPD AT++ NAL PA + +V + + + V+V ++QLSLAIG+ GQNVRL Sbjct: 301 EKIDVIRWSPDPATYIANALSPARIDQVLFTNAEERQALVLVAQDQLSLAIGKEGQNVRL 360 Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNE 357 A++LTGW IDI ++ +E Sbjct: 361 AARLTGWKIDIKDIALYKGEQEVKTDE 387 >gi|218439319|ref|YP_002377648.1| transcription elongation factor NusA [Cyanothece sp. PCC 7424] gi|218172047|gb|ACK70780.1| NusA antitermination factor [Cyanothece sp. PCC 7424] Length = 405 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 29/393 (7%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SD 48 M N L + D ++ ++ + V + +++ K ++ + + Sbjct: 1 MTIVNLPGLKNMIDEISQRHNLPKSAVHEALREALLKGYERYRRAQSLEKNQFHDDYFEN 60 Query: 49 IRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDF 106 VE++ E + ++VE V N ISLK ++ +G V + P +F Sbjct: 61 FDVELDTEEEGFRILSTKKIVEAVSNTDHHISLKEVQEVVSEAQLGDEVVLDVTPDQKEF 120 Query: 107 GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG------N 160 GR+A KQV++QK+R+ +R EF+D +++ V R E VI+ + Sbjct: 121 GRMAAIQTKQVLLQKLRDQQRKLIQEEFQDLESTVLTARVLRFERQAVIMAVQSAFGQPE 180 Query: 161 SDGVIRRDETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEI 219 + + + E + +N R K + VR RGPQ+++SR +V LF EVPEI Sbjct: 181 VEAELPKREQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEI 240 Query: 220 YNGIVQVKAVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDE 272 +V++ AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR E Sbjct: 241 EEEVVRIVAVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGE 300 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 KID++ WSPD +T++ NAL PA V +V+L + D + V+V ++QLSLAIG+ GQNVRLA Sbjct: 301 KIDVIRWSPDPSTYIANALSPARVDEVILTNPDERQALVLVAEDQLSLAIGKEGQNVRLA 360 Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQ 364 ++LTGW IDI +++ + Q Sbjct: 361 ARLTGWKIDIKDRAIYKADKENQTQDDQSEDHQ 393 >gi|307155148|ref|YP_003890532.1| NusA antitermination factor [Cyanothece sp. PCC 7822] gi|306985376|gb|ADN17257.1| NusA antitermination factor [Cyanothece sp. PCC 7822] Length = 396 Score = 239 bits (610), Expect = 8e-61, Method: Composition-based stats. Identities = 127/379 (33%), Positives = 204/379 (53%), Gaps = 29/379 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAA----------RSLYGTM--SDIRVEINPE 56 L + + ++ ++ + V + +++ K ++ + + VE++ E Sbjct: 9 LKNMIEEISQRHNLPKSAVNEALREALLKGYERYRRAQSMEKNQFHDDYFENFDVELDTE 68 Query: 57 TGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPP--MDFGRVAVQSA 114 + ++VE V N ISL+ + +G V + P +FGR+A Sbjct: 69 EEGFRILSTKKIVESVTNSDHHISLEEVQAVVSEAQLGDEVVLDVTPDQKEFGRMAAIQT 128 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS------DGVIRRD 168 KQV++QK+R+ +R EF+D G +++ V R E VI+ + ++ + + + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFQDVEGTVLNARVLRFERQAVIMAVQSTFGQPEVEAELPKR 188 Query: 169 ETISRENLRPGDRVKSYIYDVRR-EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 E + +N R K + VR RGPQ+++SR +V LF EVPEI +V++ Sbjct: 189 EQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRAAAGLVVYLFANEVPEIEEEVVRIV 248 Query: 228 AVSRDP-------GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 AVSR+ GSR K+AV + + +DPVGAC+G RGSR+QAVV ELR EKID++ WS Sbjct: 249 AVSREANPPSRYVGSRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 281 PDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 PD AT++ NAL PA V +V+L + D + ++V ++QLSLAIG+ GQNVRLA++LTGW I Sbjct: 309 PDPATYIANALSPARVDEVILTNPDERQALILVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 340 DIITEEEDSINRQKDFNER 358 DI ++K + Sbjct: 369 DIKDRALYKAEKEKQQPQD 387 >gi|255325207|ref|ZP_05366313.1| transcription termination factor NusA [Corynebacterium tuberculostearicum SK141] gi|255297772|gb|EET77083.1| transcription termination factor NusA [Corynebacterium tuberculostearicum SK141] Length = 338 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 41/357 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60 LQ + E+++ +L +A ++ + + G S RV+I+ TG + Sbjct: 5 LQALRTIESERNVPVKDLLEAIAGALLYSYLDYRESNAGGKVEGAKS--RVDIDATTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ +V E + T +++ + P +FGRV Q+ ++ I++ Sbjct: 63 SV-----IVSERDPETGEVTTE----------------YDDTPENFGRVGAQAVREAILR 101 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETIS 172 K+REAE +R Y + + G ++SG V+R N V+V LG+ DG++ E I Sbjct: 102 KLREAEAERTYDSYSELTGRVVSGIVQRDARANARGIVVVQLGSELESQDGILLPAEQIP 161 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 162 GEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL Sbjct: 222 AGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDFSEDPTVYVGNALA 281 Query: 293 PAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V KV +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 282 PSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|19553191|ref|NP_601193.1| transcription elongation factor NusA [Corynebacterium glutamicum ATCC 13032] gi|62390827|ref|YP_226229.1| transcription elongation factor NusA [Corynebacterium glutamicum ATCC 13032] gi|145295891|ref|YP_001138712.1| transcription elongation factor NusA [Corynebacterium glutamicum R] gi|21324757|dbj|BAB99380.1| Transcription terminator [Corynebacterium glutamicum ATCC 13032] gi|41326165|emb|CAF20328.1| PUTATIVE TRANSCRIPTIONAL TERMINATION/ANTITERMINATION FACTOR [Corynebacterium glutamicum ATCC 13032] gi|140845811|dbj|BAF54810.1| hypothetical protein [Corynebacterium glutamicum R] Length = 332 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 126/349 (36%), Positives = 194/349 (55%), Gaps = 35/349 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI----RVEINPETGDISLFRLL 66 Q A+ EK I +L +A ++ + T++ RV+I+ TG +++ Sbjct: 6 QALKAIESEKGIPVPDLLRTIASALLHSYMDNRETVASANLKPRVDIDSTTGTVNV---- 61 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V E D + ++ D P +FGRV+ ++ + I++ +REAE Sbjct: 62 -IVSE---------------FDENGELASEYDD--TPSNFGRVSARAVRDAIVKSLREAE 103 Query: 127 RDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRP 178 R + + D G ++SG V+ E G +IV LG N DGV+ E I E L+ Sbjct: 104 ASRAFDAYADYEGTVVSGIVQADARAAERGIIIVQLGTEADNQDGVLLPAEQIPGEKLKH 163 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRVK ++ V + Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+K Sbjct: 164 GDRVKCFVVGVGKGNTDIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRSK 223 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV + +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V Sbjct: 224 VAVQAKVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSEDPATFVGNALAPSKVVN 283 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 284 VEVTDLEAQTARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDID 332 >gi|311739681|ref|ZP_07713516.1| transcription termination factor NusA [Corynebacterium pseudogenitalium ATCC 33035] gi|311305497|gb|EFQ81565.1| transcription termination factor NusA [Corynebacterium pseudogenitalium ATCC 33035] Length = 338 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 41/357 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR---------SLYGTMSDIRVEINPETGDI 60 LQ + E+S+ +L +A ++ + + G S RV+I+ TG + Sbjct: 5 LQALRTIESERSVPVKDLLEAIAGALLYSYLDYRESNAGGKVEGAKS--RVDIDATTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 S+ +V E + T +++ + P +FGRV Q+ ++ I++ Sbjct: 63 SV-----IVSERDPETGEVTTE----------------YDDTPENFGRVGAQAVREAILR 101 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETIS 172 K+REAE +R + + + G ++SG V+R N V+V LG+ DG++ E I Sbjct: 102 KLREAEAERTFDSYSELTGRVVSGIVQRDARANARGIVVVQLGSELESQDGILLPAEQIP 161 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 162 GEKLEHGDRIKAYVVGVNRNGAQVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIARE 221 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL Sbjct: 222 AGHRSKVAVVGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDFSEDPTVYVGNALA 281 Query: 293 PAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V KV +D + V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 282 PSKVVKVTVVDNEAQIARVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|34558085|ref|NP_907900.1| transcription elongation factor NusA [Wolinella succinogenes DSM 1740] gi|34483803|emb|CAE10800.1| TRANSCRIPTION ELONGATION FACTOR [Wolinella succinogenes] Length = 375 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 106/343 (30%), Positives = 187/343 (54%), Gaps = 9/343 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + +AYEK + D V + ++I A+ VEI+ + + L++ + V Sbjct: 4 ILDIIELIAYEKGLKIDSVAGAVKEAIIITAKKSLDEHIAYDVEIDKKNKTLKLYQKILV 63 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + + IS+ A++ D +++G + L + R AV + + + ++ Sbjct: 64 CPPGDERLSSDPDNHISITEAKEMDEEVEVGDELRYELSLENMSRSAVNTLYKELEFHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K +VG+I+SG+V RV+ N V++ + + I E+ + G+ V Sbjct: 124 RLIETQLFEKYKSQVGKIVSGSVVRVDDEGNTFVEIDEIRAFLPKKNRIKGESFKVGNVV 183 Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V +++ Q+ LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+A+ Sbjct: 184 GAILKHVSIDRKNGIQIELSRTTPKLLEELLRLEVPEIKDGDVTIEKCARIPGERAKVAI 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 SS ID VGA VG++G R+ AV EL++E ID + +SP FV +L PA+++ V + Sbjct: 244 SSSSPKIDAVGATVGVKGVRINAVGKELKNENIDCIEYSPIPEMFVARSLSPALISSVKI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 D + V +P EQ AIG+ G N+RLAS LTG+ I++I + Sbjct: 304 D--GTKAIVTLPSEQKPKAIGKNGINIRLASMLTGYEIELIEQ 344 >gi|306836351|ref|ZP_07469329.1| transcription termination factor NusA [Corynebacterium accolens ATCC 49726] gi|304567711|gb|EFM43298.1| transcription termination factor NusA [Corynebacterium accolens ATCC 49726] Length = 338 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 119/355 (33%), Positives = 198/355 (55%), Gaps = 37/355 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-------IRVEINPETGDISL 62 L+ + E+ + + +L +A ++ + + ++ RV+I+ TG +S+ Sbjct: 5 LEALRTIESERQVPVNDLLEAIASALLYSYLDYRESTAEGKAEGTKFRVDIDTTTGAVSV 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E + T +++ + P +FGRV ++ ++ I++K+ Sbjct: 65 -----IVTERDPETGEVTSE----------------YDDTPDNFGRVGARAVREAILRKL 103 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRE 174 REAE +R + + + G ++SG V+R + N V+V LG+ DG++ E I E Sbjct: 104 REAEAERTFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIPGE 163 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ G Sbjct: 164 KLQHGDRIKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIAREAG 223 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL P+ Sbjct: 224 HRSKVAVIGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALAPS 283 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V KV + D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 284 KVIKVTVLDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|193214185|ref|YP_001995384.1| transcription elongation factor NusA [Chloroherpeton thalassium ATCC 35110] gi|193087662|gb|ACF12937.1| NusA antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 531 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 124/398 (31%), Positives = 211/398 (53%), Gaps = 29/398 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 ++ ++ D+IQK R Y + RV INP+ GD ++ L +VVEE++ + +ISL+ A+ Sbjct: 44 DIVDLLRDTIQKQLRKDYDPEVEARVIINPDRGDFEVYILKQVVEEIDLPSIEISLEEAQ 103 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 + D S+++G P+ D+ R ++Q KQ + +K+R+AER Y E +KVGE++S Sbjct: 104 EIDDSLELGDFYEVGPIHLEDYLTRKSIQIIKQAVQKKMRDAERQAIYEECLEKVGEVVS 163 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG--- 195 V +V I + ++ E + ++N R R++ Y+ + RE+ Sbjct: 164 AEVHQVRQKEAIFTYNTTKDHKVELLLPNTEKMPKDNPRKTPRMRLYVKRIEREKIRVKL 223 Query: 196 --------------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +V++SRT +F+ KLF EVPEIY G++ VK ++R PG RAK++V Sbjct: 224 EDGTEVEREREDGPMKVIVSRTDDRFLHKLFESEVPEIYEGLIVVKGIARVPGERAKVSV 283 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-- 299 S+ S IDPVGACVG RG R+Q +V EL +E ID++ +S + ++ AL+PA + + Sbjct: 284 ESTSSRIDPVGACVGHRGKRIQNIVRELNNENIDVICFSDEPQIYIARALQPAKIDPMTV 343 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D + V++ +Q+ AIGR G N+ LA +LTG+ I+I + D + Sbjct: 344 HVDPKTRKSRVMLKPDQIKYAIGRNGNNIHLAEKLTGYEIEIYRDISDKALEDP---DDI 400 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + L+ GF +++ + I Sbjct: 401 DIISFREEFGDDMIYQLLDNGFDTAKKILEAGVDAIEK 438 >gi|68536221|ref|YP_250926.1| transcription elongation factor NusA [Corynebacterium jeikeium K411] gi|68263820|emb|CAI37308.1| N utilization substance protein A [Corynebacterium jeikeium K411] Length = 337 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 120/355 (33%), Positives = 189/355 (53%), Gaps = 32/355 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + AV ++S+D D +L + +++A R+ + V+I+P +G++++++ V Sbjct: 5 MAALRAVEKQESVDFDDLLEGVKRGLREAYRAKSHFTGPVDVDIDPISGEVTIYQ----V 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 E+ E + + + I P +FGR + ++ I ++ A Sbjct: 61 EKDE------------EGNVTGRIDDT------PKNFGRDGALAVREAIRFRINSARVQN 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 +Y E+ + ++SG V N IV LG DG I E I E L G R Sbjct: 103 RYDEYAELRYRVVSGVVSADARANERGVTIVHLGTEANGQDGQILPAEHIPGEELEHGMR 162 Query: 182 VKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+++ D + R Q+ LSRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+A Sbjct: 163 VKAFVTDVINNANRMVQINLSRTHPELVKGLFSLEVPEVADGSVEIVSVAREAGHRTKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 V S+ ++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V V Sbjct: 223 VRSTVKGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDDPATFVGNALSPSKVVSVK 282 Query: 301 L-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 + D ++ +VP QLSLAIGR GQN RLA++LTGW IDI +E + + Sbjct: 283 VTDPEMQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDIRSETDAAAEDTPS 337 >gi|259507495|ref|ZP_05750395.1| N utilization substance protein A [Corynebacterium efficiens YS-314] gi|259164880|gb|EEW49434.1| N utilization substance protein A [Corynebacterium efficiens YS-314] Length = 332 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 125/347 (36%), Positives = 199/347 (57%), Gaps = 35/347 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAA----RSLYGTMSDIRVEINPETGDISLFRLL 66 Q A+ EK I + ++ +A+++ + S S RV+I+ TG +++ Sbjct: 6 QALRAIEKEKGIRVEDMIRTIANALLHSYLDNRESDVPESSKARVDIDVSTGAVAV---- 61 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V E ++ S P +FGRV+ ++ + I++++REAE Sbjct: 62 -IVTEFDDEGTISS-----------------EYDDTPSNFGRVSARAVRDAIVRRLREAE 103 Query: 127 RDRQYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRP 178 +R + + + G ++SG V+ E G V+V LG + DG++ E I E L+ Sbjct: 104 AERAFDAYAEYEGTVMSGLVQADSRAAERGIVVVQLGTETDSQDGILLPAEQIPGEKLKH 163 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRVKSY+ V + G Q+ LSRTHP+ + +LF +E+PE+ +G V++ A+SR+ G R+K Sbjct: 164 GDRVKSYVVGVGKGPVGIQINLSRTHPELVRRLFELEIPEVADGSVEIVAISREAGHRSK 223 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++ +++ GAC+G RG RV ++ EL EKIDI+ +S D ATFV NAL P+ V Sbjct: 224 VAVRATVKNLNAKGACIGPRGQRVSNIMRELGGEKIDIIDYSDDPATFVGNALAPSKVVS 283 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + D + +V+VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VEIVDAEQQVAKVVVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 330 >gi|223040803|ref|ZP_03611069.1| transcription termination factor NusA [Campylobacter rectus RM3267] gi|222877902|gb|EEF13017.1| transcription termination factor NusA [Campylobacter rectus RM3267] Length = 366 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 189/340 (55%), Gaps = 8/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK ++ + V + +I A+ +YG + I+ T + L++ + V Sbjct: 4 IADIIESIANEKGLEIEDVKERVIRAIINTAKKIYGENYEYDAVIDSSTKSLHLYQKITV 63 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 VE+ E+ + + A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 64 VEDGDERLAEDNEHFLGVSEAKKVDAGVEIGDELTYELSTDNLGRTAAQTLHKELEYHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ + ++++ +G+++ G+V RV+ N +++ V+ R I E +PGD V Sbjct: 124 RLMEEKIFQKYQEMIGQMVFGSVTRVDSEENTFIEIDELRAVMSRKNRIKGEKFKPGDVV 183 Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ +V LSRT P+F+ L EVPEI +G+V + A +R PG RAK+A+ Sbjct: 184 KAVIKSVYIDKSMGIKVELSRTSPKFLEALLKAEVPEIKDGLVLIAASARIPGERAKVAL 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ ++DPVGA VG +G R+ AV EL E ID + +S + A + A+ PAI++ V + Sbjct: 244 VATSPNVDPVGATVGTKGVRINAVTNELSGENIDAIEYSAEPAILITRAMSPAIISSVKI 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 304 T-DENKAVVSLASEQKSKAIGKSGINIRLASMLTGYEIEL 342 >gi|224372321|ref|YP_002606693.1| transcription elongation factor NusA [Nautilia profundicola AmH] gi|223589774|gb|ACM93510.1| transcription termination factor NusA [Nautilia profundicola AmH] Length = 357 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 114/350 (32%), Positives = 181/350 (51%), Gaps = 8/350 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L + VA EK +D D V SI K A+ + G DI VE++ E G++ ++++ EV Sbjct: 4 VLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIFEV 60 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 + +E L AR+ DP+ IG + L GR + ++ +++ Sbjct: 61 RNDDVALEEPEKYFYLDEAREFDPNAQIGDKLKVELDLGKLGRSGAMALQREFEREITRL 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + Y + K+ I+SG V +V+ N V+L GV+ I E GD +K+ Sbjct: 121 LENEIYRKLISKLNTIVSGEVVKVDSEENTWVELEGVKGVLPMRNRIKGEKFEVGDVMKA 180 Query: 185 YIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V RG + LSRT+P+F+ KL VPE+ +GI+++ +R PG R+K+AV S Sbjct: 181 LLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSKVAVSS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + ++P+G +G G R+ +V EL E ID++ +SP F+ AL PAIV V +DE Sbjct: 241 LNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKNVQVDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQK 353 D V V +Q + AIG+ G N+ LA LT + I++ EE S + K Sbjct: 301 DKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKIELKDAEEKSKDTSK 350 >gi|254373566|ref|ZP_04989053.1| hypothetical protein FTCG_01522 [Francisella tularensis subsp. novicida GA99-3549] gi|151571291|gb|EDN36945.1| hypothetical protein FTCG_01522 [Francisella novicida GA99-3549] Length = 344 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 176/314 (56%), Gaps = 32/314 (10%) Query: 203 THPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRV 262 + + LF +EVPE+ ++ + V R+PG R+K+ V S+D IDP GACVG+RGSR+ Sbjct: 60 SSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSKVTVKSNDQRIDPCGACVGVRGSRI 119 Query: 263 QAVVTELRDEKIDIVVWSPDSATFVINALRP---AIVTKVVLDEDVGRIEVIVPKEQLSL 319 ++++EL EK+D+++W+ D + IN+L P A + +V +DE+ ++++V +E LS Sbjct: 120 HSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAADILEVNVDEETNSMDIVVKQESLSK 179 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 AIG+ G NVRLAS L GW I+++++ E + + F++A+++D A +L+ E Sbjct: 180 AIGKNGVNVRLASSLIGWKINVLSDAEQEEKQ----MSIVEKFVEALDIDHDFALVLIEE 235 Query: 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439 G +E+LA + +E+ IEGFDEE E+Q RA+ + + +++L Sbjct: 236 GIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKAVILSQA------LGGKKPAQDLLD 289 Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVE 499 + G+ + L +N I TMEDLA SVD+LL + ++Q Sbjct: 290 MQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDI-----------------VDMDEEQAT 332 Query: 500 SMIIHARYKMGWIE 513 ++I+ AR W E Sbjct: 333 NLIMQARAP--WFE 344 >gi|12044993|ref|NP_072803.1| transcription elongation factor NusA [Mycoplasma genitalium G37] gi|255660291|ref|ZP_05405700.1| transcription elongation factor NusA [Mycoplasma genitalium G37] gi|1352607|sp|P47387|NUSA_MYCGE RecName: Full=Transcription elongation protein nusA gi|3844734|gb|AAC71359.1| transcription termination factor NusA [Mycoplasma genitalium G37] gi|166078938|gb|ABY79556.1| transcription termination factor NusA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 531 Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats. Identities = 112/439 (25%), Positives = 206/439 (46%), Gaps = 13/439 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL I VA K++ + V+ + ++++A + ++ V IN + G I++ +L V Sbjct: 33 LLAIIKNVAKTKNLSIEEVVFCLKTALEQAYKKHLNF-VNVEVNINFDKGIINVEQLFNV 91 Query: 69 V-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V +E E+Y +I L+ A + S+ +G V+ P+P + + + QK+ E Sbjct: 92 VSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSDLINKMIAIFNQKISET 151 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSDGVIRRDETISRENLRPG 179 EF +VGE+I V+ ++ I++L + G I + E E L G Sbjct: 152 NFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKGYISKRELSKGERLEIG 211 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + I +++R+ + LSR+ + + L PEI NG + +K + R PG ++K+ Sbjct: 212 KKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKIERSPGVKSKI 271 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 AV S+D ++DPV A +G +G +++ + E E IDIV W+ D F+INA+ PA V Sbjct: 272 AVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPAEVIGY 331 Query: 300 VL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFN 356 + DE IEV+VP Q++ G +G N+RL S LTGW + E+D+ F Sbjct: 332 NILQDDERDTSIEVVVPANQIANVFGFKGVNIRLISNLTGWNSVDVYSEKDASEANIKFT 391 Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 + + + ++ + V + + + I ++ V+ + + E Sbjct: 392 RLSFEPEGLFGIKKRREKIISNDATDKVFYTSKDNVIDDEIIVDLAKDLMVDNKQKQPEQ 451 Query: 417 LEGIDITLQKKIRELGVSE 435 + + + +++ E Sbjct: 452 VAKQVVEKSQLEKQVTPKE 470 >gi|172040528|ref|YP_001800242.1| transcription elongation factor NusA [Corynebacterium urealyticum DSM 7109] gi|171851832|emb|CAQ04808.1| N utilization substance protein A [Corynebacterium urealyticum DSM 7109] Length = 332 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 115/348 (33%), Positives = 193/348 (55%), Gaps = 32/348 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ ++ + D ++ +A+ +++A R+ ++ V+I+P +G ++++++ Sbjct: 5 LATLRAIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD ++ G + + P +F R + ++ I +++ A + Sbjct: 61 ----------------ERDEEGNVTGRLDE--TPENFDRTTALAMREAIRRRIGGARVQQ 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 +Y E+ I+SG V R N +V +G DG I E I E L+ G R Sbjct: 103 RYDEYSSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVLKHGTR 162 Query: 182 VKSYIYDVRRE-QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 VK+++ DV + R Q+ LSRTHP+ + LF +EVPE+ +G V++ +++R+ G R K+A Sbjct: 163 VKAFVTDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGHRTKIA 222 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKV 299 V ++ ++ GAC+G RG RV A++ EL EKIDI+ +S D A +V NAL P+ V+ Sbjct: 223 VRATIKGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSKYVSST 282 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 V+D + V+VP QLSLAIGR GQNVRLA++LT W IDI ++ E Sbjct: 283 VIDAEQQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKSDAEQ 330 >gi|237752704|ref|ZP_04583184.1| transcription elongation factor NusA [Helicobacter winghamensis ATCC BAA-430] gi|229376193|gb|EEO26284.1| transcription elongation factor NusA [Helicobacter winghamensis ATCC BAA-430] Length = 371 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 108/356 (30%), Positives = 187/356 (52%), Gaps = 6/356 (1%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + +AYEK + + V + D++ K A+ + VEI+ + + L++++ V Sbjct: 4 ILDIIEGIAYEKGLPIESVTDAVKDAVIKVAKESLDSTIHYDVEIDKKNKTLHLYQVISV 63 Query: 69 VEEVE--NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E+ + + I L A+ D I IG + L D R AV + + + K++ Sbjct: 64 CEDSDALDGKNMIPLSEAKKHDSEIKIGDELRYELSLEDMSRNAVNALFRELEFKIQRLI 123 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 + + ++K ++G+I+SG V R + GN +++ ++ + I E G V + Sbjct: 124 ETQLFDKYKSQIGKIVSGNVVRADSLGNTYIEIDEIRAILPKKNRIKGEEFGVGQIVGAV 183 Query: 186 IYDV-RREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + V Q G + LSRT P+ + +L +EVPEI +G V++ SR PG RAK+A+ + Sbjct: 184 LKHVGIDRQNGIMIELSRTTPKMLEELLKLEVPEIKDGDVEIVNSSRIPGERAKVALKTD 243 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA+V V + + Sbjct: 244 SAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSVQPEIYIARALSPALVISVAV--E 301 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + V + EQ AIG+ G N+RLAS LTG+ I++ + + + + TQ Sbjct: 302 DKKAIVSITSEQKPKAIGKNGINIRLASMLTGYEIELKEIDSGTQQVSSNSTQETQ 357 >gi|118475774|ref|YP_892520.1| transcription elongation factor NusA [Campylobacter fetus subsp. fetus 82-40] gi|118415000|gb|ABK83420.1| transcription termination factor NusA [Campylobacter fetus subsp. fetus 82-40] Length = 365 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 114/347 (32%), Positives = 189/347 (54%), Gaps = 7/347 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK ++ + V + + AA+ LYG + ++P T I L++ + V Sbjct: 4 ISDIIESIANEKGLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKILV 63 Query: 69 VEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VE+ + + ISLK A + D +++IG ++ L + GR + I ++ Sbjct: 64 VEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGAGVLSREIEYHIQRL 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++ Y ++ K+ ++ GTV RV+ N V++ V+ I E + G+ VK+ Sbjct: 124 IEEKIYEKYNSKINTLVFGTVTRVDAEENTFVEIDEIRAVMSMKNRIKNEKFKVGNVVKA 183 Query: 185 YIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I VR +++ +V LSRT P+F+ L EVPEI +G V ++ +R PG +AK+A+FS Sbjct: 184 VIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVIIQNSARIPGKKAKIALFS 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + +ID VGA VG++G R+ AV +EL E ID + +S + A FV AL PAIV+ V +D+ Sbjct: 244 TTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIFVARALAPAIVSSVKIDD 303 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 + V + EQ S AIG G N+RLAS L+G+ I + + Sbjct: 304 --KKAIVSLVPEQKSKAIGVSGINIRLASMLSGFEIILHEIGAPTQE 348 >gi|227503407|ref|ZP_03933456.1| transcription elongation factor NusA [Corynebacterium accolens ATCC 49725] gi|227075910|gb|EEI13873.1| transcription elongation factor NusA [Corynebacterium accolens ATCC 49725] Length = 338 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 119/355 (33%), Positives = 198/355 (55%), Gaps = 37/355 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSD-------IRVEINPETGDISL 62 L+ + E+ + + +L +A ++ + + ++ RV+I+ TG +S+ Sbjct: 5 LEALRTIESERQVPVNDLLEAIASALLYSYLDYRESTAEGKAEGTKSRVDIDTTTGAVSV 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 +V E + T +++ + P +FGRV ++ ++ I++K+ Sbjct: 65 -----IVTERDPETGEVTSE----------------YDDTPDNFGRVGARAVREAILRKL 103 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRE 174 REAE +R + + + G ++SG V+R + N V+V LG+ DG++ E I E Sbjct: 104 REAEAERTFDSYSELSGRVVSGIVQRDAHANARGIVVVQLGSELESQDGILLPAEQIPGE 163 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ GDR+K+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ G Sbjct: 164 KLQHGDRIKAYVVGVNRNGANVQINLSRTHPELVRGLFELEVPEVADGSVEMIAIAREAG 223 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 R+K+AV ++ GAC+G RG RV ++ +L EKIDI+ +S D +V NAL P+ Sbjct: 224 HRSKVAVIGHAKGLNAKGACIGPRGQRVNNIMRQLGGEKIDIIDYSEDPTVYVGNALAPS 283 Query: 295 IVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V KV + D + VIVP QLSLAIG+ GQN RLA++LTGW IDI ++ + + Sbjct: 284 KVIKVTVLDSEEQVARVIVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDADAN 338 >gi|157736507|ref|YP_001489190.1| transcription elongation factor NusA [Arcobacter butzleri RM4018] gi|315635666|ref|ZP_07890929.1| transcription termination factor NusA [Arcobacter butzleri JV22] gi|157698361|gb|ABV66521.1| transcription termination factor NusA [Arcobacter butzleri RM4018] gi|315479963|gb|EFU70633.1| transcription termination factor NusA [Arcobacter butzleri JV22] Length = 391 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 111/357 (31%), Positives = 194/357 (54%), Gaps = 22/357 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ I D++AYEK + D V + + +++ K A+ + T I+ + LF+ +EV Sbjct: 4 IIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIEV 63 Query: 69 VEEVEN---------------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 V + ++ ISL+ A++ + +DIG +S L + GR A Sbjct: 64 VSKDDDRLKEGSLTKEGTPINPENYISLEEAKEINSDLDIGDFMSYELEFENMGRNAATI 123 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETIS 172 +++ + ++K+KVG+ +SGTV R++ N +++G G+++R I Sbjct: 124 LLSNFEFRLQRFVEENIVGKYKEKVGKTVSGTVTRIDKSDNTYIEIGEIKGILQRKSRIK 183 Query: 173 RENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E + GD VK+ + V ++ G V +SRT P+F+ L +EVPE+ + + ++A +R Sbjct: 184 GEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKIAIEASAR 243 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 PG+R+K+A+ + D+ IDP+GA VG++G R+ +V +L E ID V +S F+ AL Sbjct: 244 IPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPEIFISRAL 303 Query: 292 RPAIVTKVVL-----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 PAIV V + + + G+ V +P +Q S AIG+ G N+RLAS LT + I++I Sbjct: 304 SPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDIELIE 360 >gi|227833356|ref|YP_002835063.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC 700975] gi|262184342|ref|ZP_06043763.1| transcription elongation factor NusA [Corynebacterium aurimucosum ATCC 700975] gi|227454372|gb|ACP33125.1| N utilization substance protein A [Corynebacterium aurimucosum ATCC 700975] Length = 338 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 118/352 (33%), Positives = 193/352 (54%), Gaps = 39/352 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-------RVEINPETGDISL 62 L+ + E+ + +L +A ++ + ++ RV+I+ ++G +++ Sbjct: 5 LEALRTIQRERGVPVKDLLEAIAGALLYSYLDHRAESAETKAEGTKSRVDIDADSGAVTV 64 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVIIQK 121 +V E + G V+S+ P +FGR+ Q+ + I++K Sbjct: 65 -----IVTE-----------------SDRETGEVISEYDDTPDNFGRIGAQAVRDAILRK 102 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISR 173 +RE E +R Y + + G ++SG V+R + N V+V LG + D + E + Sbjct: 103 LRENEAERTYDSYSELTGTVVSGVVQRDIHANNRGVVVVQLGTEHDSQDAFLLPAEQLPG 162 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E L GDRVK+Y+ V R Q+ LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 163 EKLEHGDRVKAYVVGVNRNGAKVQITLSRTHPELVRGLFELEVPEVADGAVEIIAIAREA 222 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R+K++V ++ GAC+G +GSRV V+ EL EKIDI+ ++ D A +V NAL P Sbjct: 223 GHRSKISVRGHAKGLNAKGACIGPKGSRVSNVMRELGGEKIDIIDFNEDPAVYVGNALAP 282 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 + V +V + DE+ +V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 SKVVRVEILDEEAQVAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSD 334 >gi|258615949|ref|ZP_05713719.1| transcription elongation factor NusA [Enterococcus faecium DO] Length = 222 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 134/219 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L DA+ EK I +++V+ + ++ A + YG ++ VE + + G I ++ + E Sbjct: 4 EMLNALDALEAEKGISKEIVIDALEAALVSAYKRHYGQAQNVEVEFDQKKGKIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 V EEV + ++SLK A +P+ +IG + + P DFGR+A Q+AKQVI+Q+VREAER Sbjct: 64 VTEEVMDSQLEVSLKDALLINPAYEIGDTIRFEVTPKDFGRIAAQTAKQVILQRVREAER 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 Y EF +I+ G V+R + + V+LG + V+ + + + E +P DR+K Y+ Sbjct: 124 TIIYNEFSAYEKDIMQGIVERQDKRYIYVNLGKIEAVLSKQDQMPNEFYQPHDRIKVYVS 183 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 V +GPQV +SR+HP + +LF EVPE+Y+GIV++ Sbjct: 184 RVENTSKGPQVFVSRSHPDLLRRLFEQEVPEVYDGIVEI 222 >gi|23336297|ref|ZP_00121520.1| COG0195: Transcription elongation factor [Bifidobacterium longum DJO10A] Length = 310 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 176/294 (59%), Gaps = 17/294 (5%) Query: 52 EINPETGDISLFRLLEV-VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 E++ +G+ +++ E+ VE E+ P +G D P DFGR+A Sbjct: 2 ELDERSGNFTVWAADEIPVEPTEDNPY-----------PVPKLGEEYDD--TPRDFGRLA 48 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV--EYGNVIVDLGNSDGVIRRD 168 +A+QVI Q R AE ++ + F + G++I+G +++ + NV V +G+ + ++ R Sbjct: 49 AATARQVITQLFRRAEDEKVFGSFSGQKGKLITGIIQQDASDPSNVHVAMGDVEAILPRR 108 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA 228 E + E R G+R++ Y+ +V R +GP++++SR+HP+ + KLF EVPE+ +G V + A Sbjct: 109 EQVPGERYRHGERIRVYVVNVARGIKGPEIVVSRSHPELVRKLFEREVPELVSGAVSIMA 168 Query: 229 VSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 ++R+ G+R K+AV ++ ++P GA +G G+RV+AV+ L EKIDIV +S D A FV Sbjct: 169 IAREAGARTKIAVKANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDYSDDPAKFVA 228 Query: 289 NALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 AL PA+ T V + E + +QLSLAIG+ GQN RLA++LTGW I I Sbjct: 229 AALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGI 282 >gi|225021163|ref|ZP_03710355.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii ATCC 33806] gi|305681535|ref|ZP_07404342.1| transcription termination factor NusA [Corynebacterium matruchotii ATCC 14266] gi|224946070|gb|EEG27279.1| hypothetical protein CORMATOL_01175 [Corynebacterium matruchotii ATCC 33806] gi|305659740|gb|EFM49240.1| transcription termination factor NusA [Corynebacterium matruchotii ATCC 14266] Length = 332 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 117/347 (33%), Positives = 187/347 (53%), Gaps = 35/347 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGT----MSDIRVEINPETGDISLFRLL 66 Q A+ EK I V+L +A ++ A R + RV+I+ TG +++ Sbjct: 6 QALKAIETEKGISVQVLLETIASALMHAYREYKDAPPAPNTQARVDIDIATGAVAV---- 61 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 ++ E+++ V ++ D P +F R+ + + I++++REAE Sbjct: 62 -IISELDDEGN-----VVQEHDD------------TPANFERIGTVAVRDAIVKRLREAE 103 Query: 127 RDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDLG----NSDGVIRRDETISRENLRP 178 + Y + + G ++SG V E G V+V LG DG++ E I E L+ Sbjct: 104 TRQAYDAYSEYEGRVVSGVVQADIHANERGIVVVHLGTEADGQDGILLPAEQIPGEQLKH 163 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRVKS++ V + LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+K Sbjct: 164 GDRVKSFVVGVNHNSHSLSINLSRTHPELVRRLFELEIPEVADGSVEIVSIAREAGHRSK 223 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV + ++ GAC+G RG RV ++ EL EKIDI+ +S + A +V NAL P+ V Sbjct: 224 VAVRARVKGLNAKGACIGPRGQRVTNIMKELNGEKIDIIDYSDNPAEYVGNALAPSKVVD 283 Query: 299 VV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V +D V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VEIIDATAQTARVTVPHYQLSLAIGKEGQNARLAARLTGWKIDIRSD 330 >gi|254479107|ref|ZP_05092459.1| transcription termination factor NusA [Carboxydibrachium pacificum DSM 12653] gi|214034956|gb|EEB75678.1| transcription termination factor NusA [Carboxydibrachium pacificum DSM 12653] Length = 227 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 113/227 (49%), Positives = 155/227 (68%), Gaps = 1/227 (0%) Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 EAER+ Y EF K E+++G V R NV+++LG + ++ E I E PGDR+K Sbjct: 1 EAERNVIYEEFLAKETEVVTGIVTRAAKNNVLINLGRVEAILTPSEQIPGETFSPGDRIK 60 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 YI +V++ +GPQ+++SR+HP + +LF +E PEI GIV++++++R+PGSR K+AVFS Sbjct: 61 VYIVEVKKTTKGPQIIISRSHPGLVKRLFELESPEIQQGIVEIRSIAREPGSRTKMAVFS 120 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-D 302 D ++DP+GACVG +GSRVQAVV EL+ EKIDIV WS F++NAL PA V + D Sbjct: 121 RDPNVDPIGACVGYKGSRVQAVVNELKGEKIDIVKWSSKPQEFIMNALSPAKAISVEIVD 180 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 E VIVP QLSLAIG+ GQN RLA++LTGW IDI +E Sbjct: 181 EKEKVARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESMVKS 227 >gi|257459336|ref|ZP_05624449.1| transcription termination factor NusA [Campylobacter gracilis RM3268] gi|257443265|gb|EEV18395.1| transcription termination factor NusA [Campylobacter gracilis RM3268] Length = 375 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 102/365 (27%), Positives = 179/365 (49%), Gaps = 14/365 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK ++ V + + + A+ L+G E++P+T + L++ + V Sbjct: 4 ITDIIESIANEKGLEPADVKERVKTAFIQTAKRLFGEEYLYDSEVDPQTKRVKLYQKVHV 63 Query: 69 VEEVEN---YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + + I+L A+ + +IG +S + + GR A + + ++ Sbjct: 64 VADDDERLGDHNFIALSEAKKIGENAEIGDELSYEINIENLGRTASGVLARELNFHIQRL 123 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGNSDGVIRRDETISRENLRPGDRVKS 184 ++ + +K KVG + GTV ++++ V++ ++ + I EN + GD +++ Sbjct: 124 LEEKIFENYKSKVGTLTHGTVTKIDHDGTTYVEIEDTKAFMPLKNRIKGENFKVGDVLQA 183 Query: 185 YIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 I +V ++ G ++ LSRT P+F+ L EVPEI +G V ++A +R PG RAK+A+ Sbjct: 184 VIKNVAIDKSHGIRLELSRTSPKFLEALLAAEVPEIKDGSVIIQACARIPGRRAKIALSV 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTEL--------RDEKIDIVVWSPDSATFVINALRPAI 295 ++DPVGA VG G+R+ AV L E ID +S + A+ PAI Sbjct: 244 VSPNVDPVGATVGKGGARIDAVSKFLSKNLQDGSGGESIDAFEYSASPEILITRAMAPAI 303 Query: 296 VTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 V V + +D V V +Q S AIG+ G N+RLAS L G I++I S + Sbjct: 304 VNSVKITQDGK-AIVYVNPDQKSKAIGKNGLNIRLASMLCGCEIELIETGSASEKKVSKE 362 Query: 356 NERTQ 360 Sbjct: 363 EGLKN 367 >gi|242308920|ref|ZP_04808075.1| transcription elongation factor NusA [Helicobacter pullorum MIT 98-5489] gi|239524584|gb|EEQ64450.1| transcription elongation factor NusA [Helicobacter pullorum MIT 98-5489] Length = 373 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 106/361 (29%), Positives = 192/361 (53%), Gaps = 9/361 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + ++YEK + + V V+ +S+ K A+ EI+ + + L++++ V Sbjct: 4 ILDIIEGISYEKGLPIESVAEVVKESVIKVAKQTLDPNISYDAEIDKKNKTLHLYQVISV 63 Query: 69 VEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + +N + I L AR D I +G + L + R AV + + + K++ Sbjct: 64 CADDDNNAKEDKEHFIPLCEARKHDSEIKVGDELRYELSLENMNRSAVNALFRELEFKIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K +VG+I+SG+V R++ GN V++ ++ + I E R G V Sbjct: 124 RLIETQLFDKYKAQVGKIVSGSVVRIDDLGNTFVEIDEVRAILPKKNRIKGEEFRIGQVV 183 Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + V +++ + LSRT P+ + +L +EVPEI +G V++ + +R PG RAK+A+ Sbjct: 184 GAILKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVSCARIPGERAKVAL 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 + + IDPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV+ Sbjct: 244 KTDSAKIDPVGATVGVKGVRINAVSKELKNESIDCIEYSSQPEIYIARALSPALIVSVVV 303 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 + R V + EQ AIG+ G NVRLAS LTG+ I++ ++ + ++ + Sbjct: 304 --EDKRAIVTISNEQKPKAIGKNGINVRLASMLTGYEIELKEIGAGNLQNSEHIHQENEK 361 Query: 362 F 362 Sbjct: 362 N 362 >gi|300933074|ref|ZP_07148330.1| transcription elongation factor NusA [Corynebacterium resistens DSM 45100] Length = 331 Score = 233 bits (594), Expect = 6e-59, Method: Composition-based stats. Identities = 116/349 (33%), Positives = 188/349 (53%), Gaps = 31/349 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ ++ +++ + + ++ + L + V+I+ +G+++++++ Sbjct: 5 MAALRALEAQEGVEFHDLINGIKRGLLESYKELTRYEGWVEVDIDGTSGEVTVYQV---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +RD ++ P DFGR + + I +++EA R Sbjct: 61 ----------------ERDEDGEV--TGRFDDTPSDFGRAGAMAVRDAIRYRIKEARVQR 102 Query: 130 QYLEFKDKVGEIISGTVKRV----EYGNVIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y E+ D ++SG V R E G V+V LG DG I E + E L G R Sbjct: 103 DYDEYADLRYRVVSGVVTRNAMANERGVVVVHLGTEAKGKDGEILPAEQLPGEKLEHGMR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK+Y+ DV + R Q+++SRTHP+ + LF +EVPE+ +G V++ +V+R+ G R K+AV Sbjct: 163 VKAYVTDVIKNSRFVQIIMSRTHPELVRGLFALEVPEVADGSVEIVSVAREAGHRTKIAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ ++ GAC+G RG RV A+ EL EKIDI+ +S D A +V NAL P+ V +V + Sbjct: 223 RSTIKGLNAKGACIGPRGQRVAAIQRELGGEKIDIIDFSEDPAVYVGNALSPSKVVRVDV 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 D D +VP QLSLAIG+ GQN RLA++LTGW IDI E + + Sbjct: 283 TDPDFQVARAVVPDYQLSLAIGKEGQNARLAARLTGWKIDIRPETDAAQ 331 >gi|227504824|ref|ZP_03934873.1| transcription elongation factor NusA [Corynebacterium striatum ATCC 6940] gi|227198674|gb|EEI78722.1| transcription elongation factor NusA [Corynebacterium striatum ATCC 6940] Length = 338 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 123/358 (34%), Positives = 193/358 (53%), Gaps = 43/358 (12%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSI---------QKAARSLYGTMSDIRVEINPETGDI 60 L+ + E+ I +L +A ++ Q AA GT S RV+I+ +TG + Sbjct: 5 LEALRTIESERGIQVKDLLEAIAGALLYSYLDYREQSAAGKSEGTKS--RVDIDADTGAV 62 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLP-PMDFGRVAVQSAKQVII 119 ++ +V E + G V+S+ P +F RV Q+ ++ II Sbjct: 63 TV-----IVTE-----------------SDPETGEVISEYDDTPENFSRVGAQAVREAII 100 Query: 120 QKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETI 171 +K+REAE + Y + + G ++SG V+R N V+V LG + D ++ E + Sbjct: 101 RKLREAEAEVTYESYSELTGRVVSGIVQRDVRANERGVVVVQLGTELDSQDAILLPAEQL 160 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E L GDR+K+Y+ V R Q+ LSRTHP+ + LF +E+PE+ +G V++ A++R Sbjct: 161 PGEKLEHGDRIKAYVVGVTRNGAQVQITLSRTHPELVRGLFELEIPEVGDGAVELVAIAR 220 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 + G R+K++V ++ GAC+G RG RV ++ EL EKIDI+ ++ D A +V N+L Sbjct: 221 EAGHRSKVSVIGHAKGLNAKGACIGPRGERVNNIMRELGGEKIDIIDYNEDPAVYVGNSL 280 Query: 292 RPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V +V +D D V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 281 APSKVVRVEVVDPDAQVARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAAQD 338 >gi|300858700|ref|YP_003783683.1| transcription elongation protein [Corynebacterium pseudotuberculosis FRC41] gi|300686154|gb|ADK29076.1| transcription elongation protein [Corynebacterium pseudotuberculosis FRC41] gi|302206410|gb|ADL10752.1| Transcription elongation protein [Corynebacterium pseudotuberculosis C231] gi|302330966|gb|ADL21160.1| Transcription elongation protein [Corynebacterium pseudotuberculosis 1002] gi|308276653|gb|ADO26552.1| Transcription elongation protein [Corynebacterium pseudotuberculosis I19] Length = 332 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 116/348 (33%), Positives = 186/348 (53%), Gaps = 35/348 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARS----LYGTMSDIRVEINPETGDISLFRL 65 + + E+ + + ++ +A ++ + R + RV+I+ TG +S+ Sbjct: 5 IHALKLIESERKVPVEELIETIARALLFSYREFKDTNVEENTRARVDISATTGLVSV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +V E++ +S P +FGRV Q+ + I +++REA Sbjct: 62 --IVSELDEEGNVLS-----------------EYDDTPANFGRVGAQAVRDAIKKRLREA 102 Query: 126 ERDRQYLEFKDKVGEIISGTV----KRVEYGNVIVDLG----NSDGVIRRDETISRENLR 177 E + Y + + G ++SG V E G +V LG DG++ E I E L Sbjct: 103 ETWKAYDAYSEYEGRVVSGIVQADAYANERGITVVHLGTEAEGQDGILIPAEQIPGEKLV 162 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRA 237 GDRVK Y+ V R R Q+ LSRTHP+ + +LF +E+PE+ +G V++ +++R+ G R+ Sbjct: 163 HGDRVKCYVVGVNRTPRNLQINLSRTHPELVRRLFELEIPEVADGSVEIISIAREAGHRS 222 Query: 238 KLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVT 297 K+AV ++ ++ GAC+G RG RV ++ EL EKIDI+ + D A +V NAL P+ V Sbjct: 223 KVAVRANIKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDEDPAKYVGNALAPSKVV 282 Query: 298 KVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + D + +V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 283 HVEITDLEGQAAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSD 330 >gi|322379095|ref|ZP_08053497.1| transcription elongation factor NusA [Helicobacter suis HS1] gi|322381039|ref|ZP_08055069.1| transcription elongation factor NusA [Helicobacter suis HS5] gi|321146533|gb|EFX41403.1| transcription elongation factor NusA [Helicobacter suis HS5] gi|321148467|gb|EFX42965.1| transcription elongation factor NusA [Helicobacter suis HS1] Length = 384 Score = 232 bits (593), Expect = 7e-59, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 186/340 (54%), Gaps = 10/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + +AYEK + + + V+ +SI K A+S T ++ I+ D++L ++EV Sbjct: 14 ILDIVELIAYEKGLSLETIKDVVKNSILKVAQSCLDTEANF--VIDDSNKDLALLHVVEV 71 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + ++ +SLK A DPS+ ++ + D R AV + + + ++ Sbjct: 72 CADGDPKLEQDPKNTLSLKEAHKSDPSLKPNDLLHYEISLKDMKRGAVNTLFKDLEYNIQ 131 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + D+ + ++K + I++G V ++ N +++ ++ I E+ + G+ V Sbjct: 132 RSLEDQYFQKYKSMLNTIVTGVVLDIDANQNTYIEIDGLQAILALKNRIKGESFKVGNSV 191 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + +VR ++G + LSRT P+F+ L +EVPEI + ++V ++R PG RAKLA+ Sbjct: 192 RAILKNVRFSKQGLVLELSRTTPKFLEALLRLEVPEIADEEIEVMGIARIPGDRAKLALR 251 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S +S IDP+GA VG++G R+ A+ EL +E ID V ++ ++ N L PA ++ L Sbjct: 252 SHNSQIDPIGATVGVKGVRINAISKELCNESIDCVHYNDIPEIYIANTLSPAQTIRIKLS 311 Query: 303 ED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 E+ R V + +Q S AIG+ G NVRLA LTG+ ID Sbjct: 312 EEQGEKRALVTLYGDQKSKAIGKNGVNVRLACMLTGYNID 351 >gi|149194205|ref|ZP_01871303.1| transcription elongation factor NusA [Caminibacter mediatlanticus TB-2] gi|149136158|gb|EDM24636.1| transcription elongation factor NusA [Caminibacter mediatlanticus TB-2] Length = 356 Score = 232 bits (593), Expect = 8e-59, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 176/346 (50%), Gaps = 8/346 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + VA EK +D + V SI K A+ + G DI V++ E + +++ V Sbjct: 4 IQDLLSLVANEKGLDFEEVKEAFKRSIIKTAKKILG---DIDVDVEMEDKKLKIYQNFTV 60 Query: 69 VEE---VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 V + + + L ARD D + IG + L GR + ++ +++ Sbjct: 61 VNDDRALNEPEKYLYLDEARDFDENAQIGDKLRAELDLSKLGRSGAMALQREFEREITRL 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 + Y + K+ I+SG V +V+ N V+L GV+ R I E + GD +K+ Sbjct: 121 LENEIYRKLISKLNTIVSGEVIKVDNDENTYVELDGVRGVLPRRNRIKGEKFKVGDVLKA 180 Query: 185 YIYDVRREQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + V + + + LSRT P+F+ KL VPE+ +G++++ +R PG R+K+AV S Sbjct: 181 LLKYVHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVAVSS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 + IDP+G +G G R+ A+ EL E ID++ +SP FV AL PAIV V +DE Sbjct: 241 LNPKIDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVKIDE 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 G V V + + AIG+ G N+ LAS LT + I++ ++E+ + Sbjct: 301 KNGIAYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKSQEKSTD 346 >gi|157165500|ref|YP_001467013.1| transcription elongation factor NusA [Campylobacter concisus 13826] gi|112800050|gb|EAT97394.1| transcription termination factor NusA [Campylobacter concisus 13826] Length = 367 Score = 232 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 185/340 (54%), Gaps = 10/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V + ++ A+ +YG + V I+ ++ L++ + + Sbjct: 4 ISDIIESIANEKNLEIEDVKERVIRALINTAKRVYGENYEYDVSID-ANKNLKLYQKISI 62 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V E+ +SLK A+ D ++IG ++ L + GR A Q+ + + ++ Sbjct: 63 VANDDERLAEDNEHFLSLKEAKKIDSGVEIGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ ++ + G ++ G V RV+ N +++ ++ R I E + GD V Sbjct: 123 RLVEEKILQKYNEMSGHMVFGPVVRVDNDENTFIEIDELRAILPRKNRIKGEKFKVGDVV 182 Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+ Sbjct: 183 KAVIRKVFTDKNLGIKVELSRTSPKFLEALLTSEVPEIKDGGIIIQGSARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ +IDPVGA VG +G R+ AV EL E ID + ++ + A V A+ PAI+T V + Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHGESIDAIEYTTEPAILVARAMAPAIITSVKI 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 303 --EENKAIVTLASEQKSKAIGKNGINIRLASMLTGYEIEL 340 >gi|300780963|ref|ZP_07090817.1| transcription termination factor NusA [Corynebacterium genitalium ATCC 33030] gi|300532670|gb|EFK53731.1| transcription termination factor NusA [Corynebacterium genitalium ATCC 33030] Length = 341 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 124/359 (34%), Positives = 190/359 (52%), Gaps = 39/359 (10%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAAR--SLY------GTMSDIRVEINPETGDIS 61 + + E I D +L +A ++ A R G + RV+I+ +TG ++ Sbjct: 5 IAALKQIESEAGIPVDDLLGTIASALLFAYREGKDEFGTGAAGEGTKARVDIDTQTGAVA 64 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + V E+++ IS P++F RV Q+ + I+++ Sbjct: 65 VM-----VSELDDDGNVIS-----------------EYDDTPVNFSRVGAQAVRDAILKR 102 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLGN----SDGVIRRDETISR 173 +R A +R Y + + G+++SG V+R E G V+V LG DG++ E I Sbjct: 103 MRTAADNRAYSAYSELEGQVVSGVVQRDASANERGIVVVQLGTESDPQDGILLPAEQIPG 162 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 E L GDRVK Y+ V R V LSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 163 EKLEHGDRVKCYVVGVSGGDRRTTVNLSRTHPELVRGLFALEVPEVADGSVEIVAIAREA 222 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R+K+AV I+ GAC+G RG+RV ++ L EKIDIV +S D A +V N+L P Sbjct: 223 GHRSKVAVKGVAKGINAKGACIGPRGARVTNIMESLGGEKIDIVDYSDDPAVYVGNSLAP 282 Query: 294 AIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 + V +V + + V+VP QLSLAIGR GQN RLA++LTGW IDI ++ + S + Sbjct: 283 SKVVRVDVVDHDAQTARVVVPDYQLSLAIGREGQNARLAARLTGWKIDIHSDADLSAGQ 341 >gi|38234060|ref|NP_939827.1| transcription elongation factor NusA [Corynebacterium diphtheriae NCTC 13129] gi|38200322|emb|CAE50007.1| Putative N utilization related protein [Corynebacterium diphtheriae] Length = 332 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 121/347 (34%), Positives = 191/347 (55%), Gaps = 35/347 (10%) Query: 11 QIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG----TMSDIRVEINPETGDISLFRLL 66 Q A+ +++I D +L +A ++ A + S RV+IN TG +S+ Sbjct: 6 QALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVSV---- 61 Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 +V E++ + P +FGRV Q+ + I++++REAE Sbjct: 62 -IVSELDEDGVVTT-----------------EYDDTPENFGRVGAQAVRDAIVRRLREAE 103 Query: 127 RDRQYLEFKDKVGEIISGTVKR----VEYGNVIVDLG----NSDGVIRRDETISRENLRP 178 + Y + + G ++SG V+ E G V++ LG DG++ E I E+ + Sbjct: 104 TLKAYDAYSEYEGRVVSGIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKH 163 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 GDRVK+Y+ + R R Q+ LSRTHP+ + +LF +EVPE+ +G V++ ++R+ G R+K Sbjct: 164 GDRVKAYVVGINRTPRDLQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSK 223 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV ++ ++ GAC+G RG RV ++ EL EKIDI+ + D A FV NAL P+ V Sbjct: 224 VAVKATVKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVH 283 Query: 299 VVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 V + D + +V VP QLSLAIG+ GQN RLA++LTGW IDI ++ Sbjct: 284 VEITDAEAQTAQVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSD 330 >gi|163782301|ref|ZP_02177299.1| transcription elongation factor NusA [Hydrogenivirga sp. 128-5-R1-1] gi|159882334|gb|EDP75840.1| transcription elongation factor NusA [Hydrogenivirga sp. 128-5-R1-1] Length = 333 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 122/353 (34%), Positives = 203/353 (57%), Gaps = 25/353 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + ++ + VA EK + VV + ++I A + IR ++ Sbjct: 5 IRKLIEQVAKEKDLPERVVEYALKNAIAIAIKK----DKRIRENLDI------------- 47 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E + ++ + + R+ + + D R+A +AK+ + ++ AER+ Sbjct: 48 --EFTDEGIKVYVVKGKGREK-----ERLPLDISTEDVNRIAAFAAKEEFLNELERAERE 100 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R +LE+K+ GE+++G V++ + G+++VDLG + V+ R E I E GD+VK+ + Sbjct: 101 RGFLEYKELEGEVVTGIVRKIYDNGDILVDLGKVEAVLPRREQIPGETYHVGDKVKALLL 160 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +V++ P+++LSRTHP F+ +L E+PE+ + ++VK+V+R PG RAK+AV++ D Sbjct: 161 EVKKMHGEPRLILSRTHPLFLKRLLETEIPEVADKEIEVKSVARIPGERAKVAVYAKDMK 220 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG VG+RGSR+Q + EL EKID+V W+ D F+ AL PA T + L + R Sbjct: 221 MDPVGIVVGLRGSRIQPISDELHGEKIDVVRWTDDEEEFIRRALSPAQPTAIRLIPEEER 280 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 EV VP++QLSLAIGRRG NV+LA +LTGW ID+++EE+ + E ++ Sbjct: 281 AEVAVPQDQLSLAIGRRGTNVKLAHRLTGWHIDVMSEEDFEKLTELRETESSE 333 >gi|319955949|ref|YP_004167212.1| nusa antitermination factor [Nitratifractor salsuginis DSM 16511] gi|319418353|gb|ADV45463.1| NusA antitermination factor [Nitratifractor salsuginis DSM 16511] Length = 375 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 10/363 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I +++A+EK++ + L +++ A+ L G + VEI+ +T ++++L V Sbjct: 4 ILSIIESMAHEKNLSVESALEAFKEALINTAKRLEGEEGEYEVEIDHDTQSYHIYKVLTV 63 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V E I++ A+ D I+ G + + ++GR A + Q + ++ Sbjct: 64 VNNDDPRAQEEPEKYITVDEAKSYDEEIEPGDKIRSEIHLEEYGRTAAANLFQELEYHIQ 123 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + ++K KVG II GTV RV+ GN V++G G++ + I E+ + GD + Sbjct: 124 RRIEQDLFDKYKAKVGSIIIGTVSRVDDAGNTYVEIGELKGILSQRNRIKGESFKTGDTL 183 Query: 183 KSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ + V + + + L+RT P+F+ +L EVPEI +G V++ + +R PG RAK+A+ Sbjct: 184 KALLRFVSIDPKYGMHLELTRTAPKFLEELMKREVPEIQDGAVEIISSARIPGERAKVAL 243 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S IDP+GA VG RG R+ AV EL E ID + +SP +V AL PAIV V + Sbjct: 244 KSDRPDIDPIGAAVGQRGVRINAVSEELCGENIDCIEYSPIPEIYVTRALSPAIVQNVRI 303 Query: 302 ---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 + + V + +Q + AIG+ G N+RLAS LT + I++ E E+ Sbjct: 304 ENNNTAEQKAIVDITSDQKAKAIGKSGINIRLASMLTKYQIELNEVEGIVERAPSGTEEK 363 Query: 359 TQF 361 T+ Sbjct: 364 TKD 366 >gi|296117673|ref|ZP_06836257.1| transcription termination factor NusA [Corynebacterium ammoniagenes DSM 20306] gi|295969404|gb|EFG82645.1| transcription termination factor NusA [Corynebacterium ammoniagenes DSM 20306] Length = 340 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 120/355 (33%), Positives = 187/355 (52%), Gaps = 40/355 (11%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARS----LYGTMSDIRVEINPETGDISLFRL 65 + A+ E+ + +L+ +A + A RV+I+ +TG++S+ Sbjct: 5 IDALRAIETERGVPVTDLLTSVASGLLYAYTEYRDGNIEENHKARVDIDADTGEVSV--- 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV E + I+ P +FGRVA + + I +++RE Sbjct: 62 --VVTESDEDGEIIT-----------------EFDDTPTNFGRVAAPAVRDAIFKRLREV 102 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN---------SDGVIRRDETIS 172 E DR Y + + G ++SG V++ + N V+V LG DG++ E I Sbjct: 103 EADRAYDSYAELQGTVVSGVVQQDSHANSRGIVVVQLGTEIDIKEGKTQDGILLPAEQIP 162 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E L G RV++Y+ V++E QVLLSRTHP+ + LF +EVPE+ +G V++ A++R+ Sbjct: 163 GERLTHGTRVRAYVVGVQKEGARVQVLLSRTHPELVRGLFELEVPEVLDGAVEIVAIARE 222 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV ++ GAC+G RG RV V+ L EKIDI+ ++ D +V NAL Sbjct: 223 AGHRSKVAVTGQVKGLNAKGACIGPRGQRVTNVMQSLGGEKIDIIDFNEDPGVYVGNALA 282 Query: 293 PAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 P+ V +V + D + V VP QLSLAIG+ GQN RLA++LTGW IDI ++ + Sbjct: 283 PSKVVRVEVLDPEAQLARVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIHSDAD 337 >gi|313681423|ref|YP_004059161.1| nusa antitermination factor [Sulfuricurvum kujiense DSM 16994] gi|313154283|gb|ADR32961.1| NusA antitermination factor [Sulfuricurvum kujiense DSM 16994] Length = 377 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 110/363 (30%), Positives = 189/363 (52%), Gaps = 11/363 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I +++A EK ++ D V + S + A+ + +I+ T + L +++ V Sbjct: 4 ILDIIESIANEKGLNPDRVQEAIKTSFIQTAKRIINPTFAFEADIDDRTKQVRLRQIITV 63 Query: 69 VEEV------ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V + E + + A + D +IG + +GR A + + I + Sbjct: 64 VADDAPELEGEEAGAYMGITAALEIDDEAEIGDQLQMEHDIESYGRSAFATLHREIEFHI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + + Y ++K K+ +I+SG V RV+ N +++ V+ I E + GD Sbjct: 124 QRLVENELYDKYKSKINQIVSGRVTRVDSDQNTTIEIDEIRAVLPMKSRIKGEKFKVGDV 183 Query: 182 VKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 V + + V ++ G + LSRT P+F+ +L +EVPEI +GIV ++ +R PG RAK+A Sbjct: 184 VSAIVRRVHVDKSNGISMELSRTAPKFLEELLALEVPEIKDGIVVIEKCARIPGERAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 ++++ IDP+GA VG+RG R+ AV EL E ID V +S F+ A+ PAI++ VV Sbjct: 244 LYTNRPQIDPIGATVGVRGVRINAVSEELCGENIDCVEYSSSPELFISRAMSPAIISAVV 303 Query: 301 LDE---DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNE 357 + E + + V +P +Q S AIG+ G N+RLAS LTG+TI++ + +K E Sbjct: 304 VTENEGEEKKAVVTLPSDQKSKAIGKSGINIRLASMLTGYTIELNEVGGSAQMGEKAQEE 363 Query: 358 RTQ 360 + + Sbjct: 364 KKE 366 >gi|154148222|ref|YP_001406096.1| transcription elongation factor NusA [Campylobacter hominis ATCC BAA-381] gi|153804231|gb|ABS51238.1| transcription termination factor NusA [Campylobacter hominis ATCC BAA-381] Length = 366 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 109/362 (30%), Positives = 180/362 (49%), Gaps = 10/362 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK ++ V + + + A+ ++G +I+P + I LF+ + V Sbjct: 4 ITDIIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKVSV 63 Query: 69 VEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 V N I+L A+ DP+I+IG +S + GR A Q + + Sbjct: 64 VANDFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNYHI 123 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDR 181 + ++ + +K+GE++ G+V V+ V++ + + I E GD Sbjct: 124 QRLLEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVGDI 183 Query: 182 VKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 + + I + +G ++ LSRT P+F+ L EVPEI +G V +KA +R PG RAK+A Sbjct: 184 INAVIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAKIA 243 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 + + +IDPVGA VG +G R+ AV EL+ E ID++ WS V A+ PAI V Sbjct: 244 LSAISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANSVK 303 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + ED + V + Q S AIG+ G N+RLAS LTG I+++ E ++ + Sbjct: 304 ISED--KAIVYINPAQKSKAIGKSGLNIRLASMLTGLQIELVETGESKKTNEEAMQDLKN 361 Query: 361 FF 362 F Sbjct: 362 LF 363 >gi|194246707|ref|YP_002004346.1| transcription elongation factor NusA [Candidatus Phytoplasma mali] gi|193807064|emb|CAP18500.1| Transcription termination factor [Candidatus Phytoplasma mali] Length = 358 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 97/359 (27%), Positives = 193/359 (53%), Gaps = 9/359 (2%) Query: 4 ANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF 63 N + I A E + ++ + ++ R + S +V+I + +I+L+ Sbjct: 1 MNSKDFFNIISEFAEENELTKEQIKDAFTKALIYGCRKAHKIKS-CKVDIKEDRNEINLY 59 Query: 64 RLLEVVEEVENY------TCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 + +++ E Y I L+ A+ + +G +++ P DF AV+ K Sbjct: 60 KQYYIIDPEEQYLNNYKDYTHIDLEEAKKIKKRVKVGQIINIKTNPKDFNLYAVKDFKNK 119 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENL 176 +++ + +R+ Y FK G++I+ V ++L ++ + ET+++E Sbjct: 120 FKEELTKQKRENIYDYFKSYEGKLINAKVIGSNSKFYYLELEKEMTTLLPKKETLNKEIF 179 Query: 177 RPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSR 236 GDR++ YI +V++ + P++ +S+TH + K+F +PEI +G +++ ++R PG R Sbjct: 180 AEGDRIRVYIVEVQKTTKLPRIFVSQTHIGLVTKIFEDWIPEINDGTLKIMMIARIPGER 239 Query: 237 AKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV 296 K+ +FS++ +DP+G+C+G G+R+++++ L+ EKID+ +WS + + N+L+PA + Sbjct: 240 TKIGLFSNNPQVDPIGSCIGKNGNRIKSIIKLLQGEKIDLFLWSEKNEELISNSLQPAKI 299 Query: 297 TKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 +V + + + + VIV +QLSLAIG+ G+NV+LA+Q T W IDI T + + Sbjct: 300 FQVNIKNLENKKALVIVEDDQLSLAIGKLGKNVKLAAQATKWNIDIKTLSQLKKIKTMT 358 >gi|307720459|ref|YP_003891599.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294] gi|306978552|gb|ADN08587.1| NusA antitermination factor [Sulfurimonas autotrophica DSM 16294] Length = 378 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 108/366 (29%), Positives = 188/366 (51%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L IA+A+ +EK + + V+ + + + A+ + G +I+ +T +I + + + V Sbjct: 4 ILDIAEAIGHEKGLQPEKVMEALKTAFVQTAKRVIGQNFAFEAQIDEDTKNIKIVQTITV 63 Query: 69 VEEVENYTCQ-------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V + + ISL AR+ D +++G + D+GR A + I Sbjct: 64 VADDDEKLQDEEVAPAYISLTEAREYDDQVELGDQLQIDHDLEDYGRTAASQLHREIEYH 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGD 180 ++ D Y ++K KVG ++SG V RV+ N +++ V+ I E GD Sbjct: 124 IQRLVEDEIYNKYKSKVGTLVSGRVTRVDAQNNTYIEVDEIRAVLPMKSRIKGEIFDVGD 183 Query: 181 RVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K+ + V ++ G Q+ LSRT P+F+ L +EVPEI G V ++ +R PG RAK+ Sbjct: 184 HIKAVVRRVNMDKENGMQIELSRTSPKFLEALLELEVPEIAEGSVIIEKAARIPGERAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 A+ S+ +D VGA VG++G R+ AV EL E ID + ++ FV + PAI++ V Sbjct: 244 ALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFVSRTMSPAIISHV 303 Query: 300 VLDE----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + + + + + +P +Q S AIG+ G N+RLAS LTG I+++ + + N Sbjct: 304 EIVKNEEGENEKAIITLPADQKSKAIGKSGINIRLASMLTGMQIELLENDAVTTNEDGTV 363 Query: 356 NERTQF 361 E+ + Sbjct: 364 EEKKEN 369 >gi|296274352|ref|YP_003656983.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM 7299] gi|296098526|gb|ADG94476.1| transcription termination factor NusA [Arcobacter nitrofigilis DSM 7299] Length = 391 Score = 229 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 189/363 (52%), Gaps = 22/363 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++ I D++AYEK I + V + + +++ K + EI+ + + LF+ +EV Sbjct: 4 IIDILDSIAYEKGIKSEHVETALKEALIKTGEKMVDHTLIFDAEIDRKNKRLKLFQKIEV 63 Query: 69 VEEVE---------------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 +++ + N I+L A++ D +DIG + L + GR A Sbjct: 64 IKDDDKRLQGEEVDQYNNIINPENFIALSEAKEIDADLDIGDFLDYDLEFENMGRNAATI 123 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETIS 172 +++ + ++K K+G+II+G+V RV+ N V++G G++ R I Sbjct: 124 LHNNFEYRLQRYIEENLVSKYKSKIGKIINGSVTRVDRAENTFVEIGEVKGMLTRKSRIK 183 Query: 173 RENLRPGDRVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 E + GD +K+ + V ++ G + LSRT P+F+ L +EVPE+ + + ++A +R Sbjct: 184 GETFKVGDNLKAVVKAVTIDKTNGLIIELSRTSPKFLEALLALEVPELKDERITIEASAR 243 Query: 232 DPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 PGSRAK+A+ + D IDP+G+ VG++G R+ AV +L E ID V +S FV AL Sbjct: 244 IPGSRAKIALSTMDPQIDPIGSVVGVKGVRITAVSQQLHGENIDCVEYSTIPEMFVARAL 303 Query: 292 RPAIVTKVVLDEDVG-----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 PAI+ V + + + V + +Q S AIG+ G N+RLAS LT I+++ + Sbjct: 304 SPAIIKSVQIIKSEKYDEKDKAIVTILSDQKSKAIGKSGLNIRLASMLTKCEIELVEIGD 363 Query: 347 DSI 349 ++ Sbjct: 364 NTQ 366 >gi|303233400|ref|ZP_07320069.1| transcription termination factor NusA [Atopobium vaginae PB189-T1-4] gi|302480529|gb|EFL43620.1| transcription termination factor NusA [Atopobium vaginae PB189-T1-4] Length = 413 Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats. Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 45/368 (12%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +++N +E L D + + +D ++ + ++ K + RV I+ TG + Sbjct: 1 MASNMVEAL--ID-ICKKTHLDELYIIDRLEQTLAKNYADILHLEYGARVTIDRATGKVY 57 Query: 62 LFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDP---LPPMDFGRVAVQSAKQVI 118 ++ ++ +P G + P + R+ VQ KQ + Sbjct: 58 VY------------------ELVPKGEPDEQTGEYEDFEERDVTPKEASRLVVQHVKQEL 99 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIR----------R 167 + +R ++R + Y EF +++G++I+GTV + I+ + + + R Sbjct: 100 AEIIRNSQRQQIYEEFSNRIGDLITGTVLQTTSDFAIIKIRDGVEAELPYFDPHRYPEER 159 Query: 168 DETISRENLRPGDRVKSYIYDVRRE----------QRGPQVLLSRTHPQFMVKLFHMEVP 217 +E E R+ + I DVR ++ P +++SR + + +LF +EVP Sbjct: 160 NERPPHEYYVHNQRLHALIVDVRNPSSTSAPVRGERQRPSIVVSRARRELISRLFELEVP 219 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 EIY+G+V +++V+RD G R+K+AV S D +DPVGACVG +G+RV+ VV+ELR E++D+V Sbjct: 220 EIYDGVVTIRSVARDAGVRSKIAVSSQDPHLDPVGACVGPKGARVRTVVSELRGERVDVV 279 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGW 337 W D A V +AL PA VT+V++DE+ VIVP +QLSLAIG+ GQN RLA+ LTG Sbjct: 280 QWYDDPAQNVASALSPATVTRVLVDEEHNHATVIVPDDQLSLAIGKGGQNARLAASLTGM 339 Query: 338 TIDIITEE 345 IDI E Sbjct: 340 HIDIKNES 347 >gi|42565347|gb|AAS20956.1| NusA [Clover phyllody phytoplasma] Length = 357 Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 192/358 (53%), Gaps = 12/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N ++ D +A E+ +D+D V+ A + + + S ++++ + +I Sbjct: 1 MISKN---FFKLLDKIAQERDLDKDQVIGAFAKGLISGCKKNHKVKS-CKIQLKEDKSEI 56 Query: 61 SLFRLLEVVEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E + I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 K +++ + +R+ Y FK + G++IS + ++L ++ + E S Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 177 NEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ + S D+ +D +G+C+G R +R++ V+ L+ EK+D+ VWS D + NAL+P Sbjct: 237 GERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKGEKVDLFVWSDDPQELIANALKP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I Sbjct: 297 ASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQIE 354 >gi|85057852|ref|YP_456768.1| transcription elongation factor NusA [Aster yellows witches'-broom phytoplasma AYWB] gi|84789957|gb|ABC65689.1| N utilization substance protein A [Aster yellows witches'-broom phytoplasma AYWB] Length = 357 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 105/358 (29%), Positives = 191/358 (53%), Gaps = 12/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N ++ D +A E +D+D V+ A + + + S ++ + + +I Sbjct: 1 MISKN---FFKLLDKIAQESGLDKDQVIDAFAKGLISGCKKNHKVKS-CKIHLKEDKSEI 56 Query: 61 SLFRLLEVVEEVE------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E + I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATISTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEF 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 K +++ + +R+ Y FK + G++IS + ++L ++ + E S Sbjct: 117 KNQFNEELTKKKRENIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ++ G+R++ ++ +V++ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 177 NEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ +FS D+ ID +G+C+G R +R++ V+ L+ EKID+ +WS D + NAL+P Sbjct: 237 GERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIKILKGEKIDLFIWSDDPQELIANALKP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ I Sbjct: 297 ASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQIE 354 >gi|224417809|ref|ZP_03655815.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|253827150|ref|ZP_04870035.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|313141351|ref|ZP_07803544.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] gi|253510556|gb|EES89215.1| transcription elongation factor NusA [Helicobacter canadensis MIT 98-5491] gi|313130382|gb|EFR47999.1| transcription elongation factor [Helicobacter canadensis MIT 98-5491] Length = 370 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 101/359 (28%), Positives = 191/359 (53%), Gaps = 8/359 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + ++YEK + + V+ V+ +S+ K A+ + EI+ + + L++++ V Sbjct: 4 ILDIIEGISYEKGLPIESVMEVVKESVIKVAQQTLDSKILYDAEIDKKNKTLHLYQVISV 63 Query: 69 VEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + E+ I L AR D I +G + L + R AV + + + +++ Sbjct: 64 CSDDYEAKEDKEHFIPLSEARKHDSEIKVGDELRYELSLENMNRSAVNTLFRELEFRIQR 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + + ++K ++G+I+SG+V R++ GN V++ ++ + I E + G + Sbjct: 124 LIETQLFDKYKAQIGKIVSGSVVRIDDLGNTFVEIDEIRAILPKKNRIKGEEFKVGQVIG 183 Query: 184 SYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 + + V +++ + LSRT P+ + +L +EVPEI +G V++ A +R PG RAK+A+ Sbjct: 184 AVLKYVGIDKQNGISIELSRTTPKMLEELLRLEVPEIKDGEVEIVACARIPGERAKVALK 243 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 + +DPVGA VG++G R+ AV EL++E ID + +S ++ AL PA++ VV+ Sbjct: 244 TDSMKVDPVGATVGVKGVRINAVSKELKNESIDCIEFSNQPEIYIARALSPALIVSVVV- 302 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQF 361 + + V + EQ AIG+ G NVRLAS LTG+ I++ + ++ ++ Sbjct: 303 -EDKKAVVSISSEQKPKAIGKNGINVRLASMLTGYEIELKEIDNGTLGDRQTKEPEKSN 360 >gi|288817343|ref|YP_003431690.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6] gi|288786742|dbj|BAI68489.1| transcription elongation factor [Hydrogenobacter thermophilus TK-6] gi|308750950|gb|ADO44433.1| transcription termination factor NusA [Hydrogenobacter thermophilus TK-6] Length = 327 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 127/342 (37%), Positives = 204/342 (59%), Gaps = 25/342 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L ++ + VA EK++ +V + ++I A + ++VE+ E I ++ + Sbjct: 5 LKKLIEQVAKEKNLPEWIVEGALKNAIALAVKKDRKLKEHLQVELLEE--GIKVYIVKRN 62 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 E + +IS + R+A +AK+ ++++ +AE + Sbjct: 63 NSETVRFPLEISTEDV----------------------NRIAAYAAKEEFLKELEKAEEE 100 Query: 129 RQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R YLEF ++ GEI G V+RV E G+V+VDLG GV+ + E I +E+ R G+R+K+ + Sbjct: 101 RGYLEFVEQEGEITVGIVRRVLENGDVLVDLGRVMGVLPKREQIPKESYRQGERIKALVL 160 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ + +++LSRTHP+F+ KL EVPEI +G +++KA++R+PG RAK+ V + D Sbjct: 161 EVRKHRGRYEIILSRTHPKFLRKLLEAEVPEIKSGEIEIKAITREPGERAKVLVHAKDMK 220 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG VG+RGSR+ V EL EKID++ W+ + + +L PA VTKV L R Sbjct: 221 MDPVGVIVGLRGSRINPVSKELSGEKIDVIRWTENVEELIKKSLSPAPVTKVRLIPKDKR 280 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 EV VPKE+LSLAIG+ G NV+LA+++TGW ID+++EE+ Sbjct: 281 AEVAVPKEKLSLAIGKHGVNVKLANRITGWYIDVLSEEDFEK 322 >gi|194333210|ref|YP_002015070.1| transcription elongation factor NusA [Prosthecochloris aestuarii DSM 271] gi|194311028|gb|ACF45423.1| NusA antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 517 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 227/465 (48%), Gaps = 45/465 (9%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++V+E++ + +IS+ R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVDEIDIPSIEISIDEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+I+ Sbjct: 103 QIDDSLEVGDYYEEGPINLEEYLTRKSIQIIKQSVQKKVRDLERQVVYEECLEKVGEVIA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIY----------- 187 G V ++ VI + V+ + E I ++N R R+K Y+ Sbjct: 163 GEVYQIRPHEVIFSYNTSKDHRVELVLPKSEMIKKDNPRRTPRMKLYVKRIERERVKVKQ 222 Query: 188 ------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + G +V++SRT +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 DDGSIVEKEKPDGGMKVIVSRTDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + + Sbjct: 283 ESTSSRIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIFIARALQPAKIDPMTV 342 Query: 302 DEDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D+ V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + Sbjct: 343 HADMKTRMARVMLKPDQIKYAIGKNGNNIHLAERLTGYEIDVYRDVIDKTLEDPNDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI-------ASIEGFD---------E 403 + + + + L+ G +++ I EI I+ + Sbjct: 403 E---FREEFGDDMIYQLLDSGLDTAKKVLQAGIEEIEQALLGPTKIDEMSVFGKGRKTVK 459 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIK 448 + + Y + I + + +++ +L I D+ Sbjct: 460 PRERRLTDEEKRYWKKIAENIYRTVKDQFNEADLQEINDEDNDAA 504 >gi|154175154|ref|YP_001408581.1| transcription elongation factor NusA [Campylobacter curvus 525.92] gi|112803976|gb|EAU01320.1| transcription termination factor NusA [Campylobacter curvus 525.92] Length = 366 Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 188/340 (55%), Gaps = 10/340 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK + D V + ++ A+ +Y + V I+ ++ L++ + + Sbjct: 4 ISDIIESIANEKGLQIDDVKERVIRALINTAKRVYSENYEYDVTID-ANKNLKLYQKILI 62 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V E+ ISLK A+ D +++G ++ L + GR A Q+ + + ++ Sbjct: 63 VANDDERLNEDNEHFISLKEAKKIDSGVEVGDELTYELSLDNLGRTAAQTLHKELEYHIQ 122 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 ++ + ++ + VG+++ G+V RV+ N +++ ++ R I E + GD V Sbjct: 123 RLVEEKIFQKYDEMVGQMVFGSVVRVDNDENTYIEIDELRAILPRKNRIKGEKFKIGDVV 182 Query: 183 KSYIYDVRREQR-GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 K+ I V ++ G +V LSRT P+F+ L EVPEI +G + ++ +R PG RAK+A+ Sbjct: 183 KAVIRKVFTDKNLGIRVELSRTSPKFLEALLKAEVPEIKDGGIIIQNSARIPGERAKVAL 242 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ +IDPVGA VG +G R+ AV EL DE ID + ++ + A F+ A+ PAI++ V + Sbjct: 243 ISTTPNIDPVGATVGTKGVRINAVSKELHDENIDAIEYASEPAIFISRAMAPAIISSVKI 302 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D + V + EQ S AIG+ G N+RLAS LTG+ I++ Sbjct: 303 D--GNKAIVSLVGEQKSKAIGKNGINIRLASMLTGFEIEL 340 >gi|289810678|ref|ZP_06541307.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 236 Score = 227 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 153/235 (65%), Gaps = 6/235 (2%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL------GNSDGVIRRDETISRENLRPG 179 ER +F+D+ GEI++G VK+V N+ +++ GN++ VI R++ + REN RPG Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPG 181 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 DR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG Sbjct: 182 DRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 236 >gi|119356207|ref|YP_910851.1| transcription elongation factor NusA [Chlorobium phaeobacteroides DSM 266] gi|119353556|gb|ABL64427.1| NusA antitermination factor [Chlorobium phaeobacteroides DSM 266] Length = 518 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 125/433 (28%), Positives = 219/433 (50%), Gaps = 32/433 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L +VV EV+ + +IS+ R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKVVSEVDLESIEISIDEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 103 KIDDSLELGDYYEEGPIKLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRR------- 191 G V +V VI + V+ R E I ++N R R+K Y+ + R Sbjct: 163 GEVYQVRSNEVIFTYNTSKDHRVELVLPRAEMIKKDNPRRNPRMKLYVKRIEREKVKVRL 222 Query: 192 ----------EQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 DDGGVVERDKPDGGMKVIVSRIDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + + Sbjct: 283 ESTSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTV 342 Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + Sbjct: 343 HADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKSMEDPTDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASI---EGFDEETAVEIQGRAREY 416 + + + + L+ G +++ + I + EE +GR R Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKVLKAGVERIEEVLLGPSAPEEITFFSKGRTRSP 459 Query: 417 LEGIDITLQKKIR 429 ++ + + ++ + Sbjct: 460 IKPRERKVTEEEK 472 >gi|78189424|ref|YP_379762.1| transcription elongation factor NusA [Chlorobium chlorochromatii CaD3] gi|78171623|gb|ABB28719.1| NusA antitermination factor [Chlorobium chlorochromatii CaD3] Length = 527 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 122/396 (30%), Positives = 210/396 (53%), Gaps = 29/396 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++VE+V+ T +ISL+ R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILRKIVEDVDIPTIEISLEDIR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+ Sbjct: 103 KIDDSLEVGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLIVYEECLEKVGEVIA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRG--- 195 G V +V VI + V+ + E + ++N R R+K Y+ + RE+ Sbjct: 163 GEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRMPRMKLYVKRIEREKNKIRM 222 Query: 196 --------------PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +V++SR +F+ KLF EVPEI +G++ +KAV+R PG RAK+AV Sbjct: 223 DDGTVVEREKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIIIKAVARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-- 299 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPMTV 342 Query: 300 VLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 +D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + Sbjct: 343 HVDIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVMDKTTEDPTDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + + + + L+ G +++ + EI Sbjct: 403 E---FREEFGDDMIYQLLDAGLDTAKKVLRAGLEEI 435 >gi|15605801|ref|NP_213178.1| transcription elongation factor NusA [Aquifex aeolicus VF5] gi|2982967|gb|AAC06581.1| transcription termination NusA [Aquifex aeolicus VF5] Length = 337 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 130/355 (36%), Positives = 201/355 (56%), Gaps = 25/355 (7%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + +L ++ + VA E + VV + ++I A R ++ VE E I ++ + Sbjct: 3 KAQLQKLIEQVATEHDLPERVVERALKNAIITAIRKEKKIRDELEVEFTDE--GIKVYVV 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 R + + P D R+A +AK+ +++ A Sbjct: 61 R------------------RKGNKKFK----FPLDISPEDLNRLAAYAAKEEFYKELERA 98 Query: 126 ERDRQYLEFKDKVGEIISGTVKRV-EYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKS 184 E++R YLEFK+ GEI+ G V++V E G+VIVDLG D ++ + E + +N + GD+VK+ Sbjct: 99 EQERGYLEFKELEGEIVYGIVRKVLENGDVIVDLGRIDAILPKREQLPTDNFKTGDKVKA 158 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 + +VR+ + P ++LSRTHP F+ KL EVPEI G+V++KAV+R PG RAK+AV + Sbjct: 159 LLLEVRKRRGEPVLILSRTHPNFLRKLLEQEVPEIKEGLVEIKAVARIPGERAKVAVEAK 218 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 + +DPVG VG++G R+Q V EL EKID++ WS D A + AL PA K+ L Sbjct: 219 EMKMDPVGIVVGLKGMRIQKVSEELGGEKIDVIRWSDDIAELIKRALAPAHPEKIKLFPY 278 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 R EV VP+E+LSLAIG++G NV+LAS+LTGW ID+++ ++ + E Sbjct: 279 EKRAEVAVPEEELSLAIGKKGINVKLASKLTGWHIDVLSTKDFEKLEELRKKEDE 333 >gi|189499377|ref|YP_001958847.1| transcription elongation factor NusA [Chlorobium phaeobacteroides BS1] gi|189494818|gb|ACE03366.1| NusA antitermination factor [Chlorobium phaeobacteroides BS1] Length = 521 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 118/409 (28%), Positives = 211/409 (51%), Gaps = 29/409 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L VV+EV+ + +I L+ Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKTVVDEVDLPSIEIGLEEVS 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + + P+ D+ R ++Q KQ + +KVR+ E+ Y + +KVGE+++ Sbjct: 103 RIDESLELGDMYEEGPVNLEDYLTRKSIQIIKQSVQKKVRDMEKQVVYEDCLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIY----------- 187 G V +V VI + V+ + E + ++N R R+K Y+ Sbjct: 163 GEVYQVRQNEVIFSYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRQ 222 Query: 188 ------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 DDGSIVEKEKPDGGMKVIVSRIDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ D ++ AL+PA + + + Sbjct: 283 ESTSSRIDPVGASVGYRGKRIQSIVKELNNENIDVINFTDDPQIYIARALQPAKIDPMTV 342 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ EQ+ AIG+ G N+ LA +LTG+ +D+ + D + + Sbjct: 343 HADMKTHKARVMLKPEQIKYAIGKNGNNIHLAERLTGYDVDVYRDVIDKSMEDPNDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + + + L+ G +++ +I +I + + E Sbjct: 403 E---FREEFGDDMIYQLLDSGLDTAKKVLKAEIEDIEAALVGPPSKSEE 448 >gi|28493123|ref|NP_787284.1| transcription elongation factor NusA [Tropheryma whipplei str. Twist] gi|28572761|ref|NP_789541.1| transcription elongation factor NusA [Tropheryma whipplei TW08/27] gi|28410894|emb|CAD67279.1| N utilization transcriptional termination/antitermination factor [Tropheryma whipplei TW08/27] gi|28476163|gb|AAO44253.1| N utilization substance protein A [Tropheryma whipplei str. Twist] Length = 319 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 178/341 (52%), Gaps = 33/341 (9%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSD-IRVEINPETGDISLFRLLE 67 L + AV E+ + D ++ + ++ A G +D ++ ++N +TG+I L R+ Sbjct: 7 LSVLRAVEREQRVAFDDLVRIAEQAVVMAYLRHTGLEDADLVKAKLNRKTGEIDL-RVKH 65 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 G + P F R+A +AK+VI K+R Sbjct: 66 D-------------------------GDFI--PYKSDAFSRMAATAAKRVITSKMRTLSD 98 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNV-IVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185 D + +K K+G ++SG + + N +V L ++ ++R +E I E G VK Y Sbjct: 99 DSTFARYKTKIGTVLSGVISQSTSQNFRMVSLDRRTEAILRPEEQIPGEEYPHGKMVKVY 158 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV RG V +SRTHP + LF EVPEI +G V++ AVSR+ G R K++V S+ Sbjct: 159 VTDVTLGPRGSNVYVSRTHPGLINGLFLQEVPEIASGTVEIVAVSREAGHRTKVSVRSNS 218 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 S VGACVG G RV+AV +E+ +EKIDI+ +S D +V NA+ PA V + D Sbjct: 219 KSTSAVGACVGEYGCRVRAVTSEICNEKIDIISYSDDLGQYVANAISPATAADVFVLDSR 278 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + V V KE+ SLAIG+ GQN RLA++LTG IDI +E Sbjct: 279 QKVVRVYVSKEEYSLAIGKEGQNARLAARLTGAKIDIRIDE 319 >gi|39938634|ref|NP_950400.1| transcription elongation factor NusA [Onion yellows phytoplasma OY-M] gi|39721743|dbj|BAD04233.1| transcription terminator [Onion yellows phytoplasma OY-M] Length = 357 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 105/358 (29%), Positives = 192/358 (53%), Gaps = 12/358 (3%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M+S N ++ D +A E+ +D+D V+ A + + + S ++E+ + +I Sbjct: 1 MISKN---FFKLLDKIAQERDLDKDQVIDAFAKGLISGCKKNHKVKS-CKIELKEDKSEI 56 Query: 61 SLFRLLEVVEEVEN------YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 L++ V +E + I+L+ A+ P IG V+ + P DF AV+ Sbjct: 57 ILYKQFLVADEATMSTINLKESTPITLEEAQQIKPHAKIGQVIDIKVDPKDFNLYAVKEL 116 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 K +++ + +R+ Y FK + G++IS + ++L ++ + E S Sbjct: 117 KNQFNEELTKKKRESIYNFFKQQEGKLISAKIISENDKFYNLELEKEITTLLPKKEIASN 176 Query: 174 ENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 ++ G+R++ ++ +VR+ + P++ +S H +VK+ +PEI GIV++ V+R Sbjct: 177 NEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGLVVKVLEENIPEIQEGIVKIAGVARIS 236 Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 G R K+ + S D+ +D +G+C+G R +R++ V+ L+DEK+D+ VWS D + NAL+P Sbjct: 237 GERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIKILKDEKVDLFVWSDDPQELIANALKP 296 Query: 294 AIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 A +VV+ D+ IVP +Q SLAIG+ G+NV+LA ++T W IDI T ++ Sbjct: 297 ASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGKNVKLAVEVTKWNIDIKTLDQAQTE 354 >gi|193213433|ref|YP_001999386.1| transcription elongation factor NusA [Chlorobaculum parvum NCIB 8327] gi|193086910|gb|ACF12186.1| NusA antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 521 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 233/473 (49%), Gaps = 47/473 (9%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ + IQK R Y + + INPE GD ++ L ++VEEV+ T +I L R Sbjct: 43 DIADLLKEIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDLPTIEIGLDEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ DF R ++Q KQ + +KVR+ ER Y + +KVGE+++ Sbjct: 103 QIDDSLELGDYYEEGPIKLDDFLTRKSIQIIKQSVQKKVRDLERMAVYEDCLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYI------------ 186 G V +V VI + V+ + E + ++N R +K Y+ Sbjct: 163 GEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPHMKLYVKRIERERVKVRN 222 Query: 187 -----YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 DDGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + + Sbjct: 283 ESTSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTV 342 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPNDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV------------ 407 + + + + L+ G +++ + +I +++ Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKILKGGVEKIEEALLGTQKSEELFVFNKTRKPVK 459 Query: 408 ----EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456 I + Y + I T+ + +RE E+L ++ +D + +L +GI Sbjct: 460 PRERRITDDEKRYWKKIAETIYRTVREQFNDEDLKAL--LDDSHERSLMGDGI 510 >gi|78187634|ref|YP_375677.1| transcription elongation factor NusA [Chlorobium luteolum DSM 273] gi|78167536|gb|ABB24634.1| NusA antitermination factor [Chlorobium luteolum DSM 273] Length = 553 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 121/398 (30%), Positives = 206/398 (51%), Gaps = 29/398 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+I+ Sbjct: 103 RIDESLEVGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVIA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSY------------- 185 V +V VI + V+ + E + ++N R R+K Y Sbjct: 163 AEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVRL 222 Query: 186 ----IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 DDGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + IDPVGA VG RG R+Q++V EL +E ID++ +S + ++ AL+PA + + + Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLTV 342 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + I+R + Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDV---IDRSMEDPTDI 399 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + L+ G ++ + EI Sbjct: 400 DIIEFREEFGDDMIYQLLDAGLDTAKKALKAGVEEIEQ 437 >gi|21673079|ref|NP_661144.1| transcription elongation factor NusA [Chlorobium tepidum TLS] gi|21646150|gb|AAM71486.1| N utilization substance protein A, putative [Chlorobium tepidum TLS] Length = 521 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 234/473 (49%), Gaps = 47/473 (9%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ + IQK R Y + + INPE GD ++ L ++V+EV+ T +I L R Sbjct: 43 DIADLLKEIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDLPTIEIGLDEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 103 QIDDSLELGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERLAVYEECLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYI------------ 186 G V +V VI + V+ + E + ++N R R+K Y+ Sbjct: 163 GEVYQVRPNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKVKVRN 222 Query: 187 -----YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 DDGTVEEREKPDGGMKVIVSRVDDRFLYKLFESEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ S IDPVGA VG RG R+Q++V EL +E ID++ ++ + F+ AL+PA + + + Sbjct: 283 ESTSSRIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQVFIARALQPAKIDPMTV 342 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + + Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPNDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAV------------ 407 + + + + L+ G +++ + +I +++ Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKILKGGVEKIEEALLGTQKSEELFVFNKTRKPVK 459 Query: 408 ----EIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI 456 I + Y + I T+ + +RE E+L ++ +D + +L +GI Sbjct: 460 PKERRITDDEKRYWKKIAETIYRTVREQFNDEDLKAL--LDDSHERSLKGDGI 510 >gi|189345843|ref|YP_001942372.1| transcription elongation factor NusA [Chlorobium limicola DSM 245] gi|189339990|gb|ACD89393.1| NusA antitermination factor [Chlorobium limicola DSM 245] Length = 513 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 119/398 (29%), Positives = 207/398 (52%), Gaps = 29/398 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++V+EV+ +ISL R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILRKIVQEVDIPAIEISLDEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+D+G + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 103 KIDESLDLGDFYEEGPIRLEDYLTRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIY----------- 187 G V ++ VI + V+ + E + ++N R R+K Y+ Sbjct: 163 GEVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRL 222 Query: 188 ------DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK++V Sbjct: 223 DDGGVVEKEKPDGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKGIARVPGERAKVSV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + + Sbjct: 283 ESTSARIDPVGASVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYIARALQPAKIDPLTV 342 Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + Sbjct: 343 HADIKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSLEDPTDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + + L+ GF +++ I EI Sbjct: 403 E---FREEFGDDMLYQLLDAGFDTAKKVLKAGIEEIEQ 437 >gi|294660246|ref|NP_852895.2| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(low)] gi|284811901|gb|AAP56463.2| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(low)] gi|284930355|gb|ADC30294.1| transcription elongation factor NusA [Mycoplasma gallisepticum str. R(high)] Length = 624 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 112/440 (25%), Positives = 201/440 (45%), Gaps = 27/440 (6%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S + L+ VA K+I + + +++ D+I +A I V I+ + G + Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLK 59 Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 +F+L +V+ EE + +I LK A +P+I +G L DF RV + Q Sbjct: 60 IFKLYKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRE 174 QK+ E + E+ K+ +I+ GTV++ E ++V+LG + + + E Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285 + K+AV S++ IDPV +G G R++++ L +E ID+ W+ D Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299 Query: 286 FVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + NA P + V + ED +++IV + L IGR G NVRL S +TGW+ID Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEI-----IAHLLVAEGFADVEELACVKISEIAS 397 ++ + A+ VD+ + + F VE L I+ + Sbjct: 360 SQSAAIEDNINVVPLNYSPVDNAVLVDQFKRNSRRTKIASKQSFKKVETLQTPLIAYSTA 419 Query: 398 IEGFDEETAV--EIQGRARE 415 +EG D+ +I A+E Sbjct: 420 VEGDDDIKVDFQKIYEEAKE 439 >gi|57168596|ref|ZP_00367729.1| transcription termination factor NusA [Campylobacter coli RM2228] gi|305433015|ref|ZP_07402171.1| transcription termination factor NusA [Campylobacter coli JV20] gi|57020101|gb|EAL56778.1| transcription termination factor NusA [Campylobacter coli RM2228] gi|304443716|gb|EFM36373.1| transcription termination factor NusA [Campylobacter coli JV20] Length = 362 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 187/366 (51%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK++D + V + ++ A+ +YG D V + + ++L++ + V Sbjct: 4 IADIIESIANEKNLDIESVKEKVIIALINTAKRIYGQEYDFFV--DRKN--LNLYQKITV 59 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + EN I A+ P ++IG ++ + GR AV + + ++ Sbjct: 60 VADNDERLNENKESYIEFSKAKKEAPDVEIGDELTYECSLENLGRTAVNILHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ G V R++ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGNVVRIDNEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKMELSRTSPKFLECLLEAEVPEIKDGYVSVVKCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + +S + + AL PAIV+ V + Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFSNEPEILIARALAPAIVSSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLA L+G+ I++ + + E + Sbjct: 298 -ENEKAIVTLNSEQKSKAIGKSGINIRLAGMLSGYEIELNEVNARTTSNTLSNEEALKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|332203719|gb|EGJ17786.1| transcription termination factor NusA [Streptococcus pneumoniae GA47368] Length = 302 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 106/287 (36%), Positives = 167/287 (58%), Gaps = 15/287 (5%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 +K A + + ++G + P +FGRVA QSAKQ I++K+R+ R Y +K+ E Sbjct: 1 MKDALAINSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRKQTRAITYNTYKEHEQE 60 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLL 200 I+SGTV+R + + V+LG+ + + + + I E DR++ Y+Y V RG V + Sbjct: 61 IMSGTVERFDNRFIYVNLGSIEAQLSKQDQIPGEVFASHDRIEVYVYKVEDNPRGVNVFV 120 Query: 201 SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGS 260 SR+HP+ + +L E+PE+Y+G V++ +V+R+ G R K+AV S + ++D +G VG G+ Sbjct: 121 SRSHPEMIKRLMEQEIPEVYDGTVEIMSVAREAGDRTKVAVRSHNPNVDAIGTIVGRGGA 180 Query: 261 RVQAVVTELRD--------------EKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DV 305 ++ + ++ E ID++ W D A F+ NA+ PA V +V+ DE D Sbjct: 181 NIKKITSKFHPARYDAKNDRMVPIEENIDVIEWVADPAEFIYNAIAPAEVDQVIFDENDS 240 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 R V+VP +LSLAIGRRGQNVRLA+ LTG+ IDI + E Sbjct: 241 KRALVVVPDNKLSLAIGRRGQNVRLAAHLTGYRIDIKSASEFEAMED 287 >gi|110597607|ref|ZP_01385892.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM 13031] gi|110340727|gb|EAT59204.1| transcription termination factor NusA [Chlorobium ferrooxidans DSM 13031] Length = 516 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 122/398 (30%), Positives = 210/398 (52%), Gaps = 29/398 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++V+EV+ + +ISL R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVKEVDIESIEISLDEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+DIG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 103 KIDDSLDIGDYYEEGPIKLDDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRRE------ 192 G V ++ VI + V+ + E + ++N R R+K YI + RE Sbjct: 163 GEVYQIRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYIKRIEREKVKTKL 222 Query: 193 -----------QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV Sbjct: 223 DDGNVVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + + Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYTDEPQIYISRAMQPAKIDPLTV 342 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + Sbjct: 343 HADPKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSMEDPTDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + + L+ G +++ + EI + Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKVLKAGVEEIEN 437 >gi|254992770|ref|ZP_05274960.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-064] Length = 251 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 107/250 (42%), Positives = 161/250 (64%) Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR+K Y Sbjct: 1 ERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVY 60 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V++++ Sbjct: 61 LTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISVYTAN 120 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V+++E Sbjct: 121 EEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIVNEAD 180 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 VIVP QLSLAIG+RGQN RLA++LTGW IDI +E + N+ ++ Sbjct: 181 QATTVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETVATELGIYPRNDVEAPEVED 240 Query: 366 INVDEIIAHL 375 + Sbjct: 241 AESETYTEDE 250 >gi|315452942|ref|YP_004073212.1| transcription termination factor NusA [Helicobacter felis ATCC 49179] gi|315131994|emb|CBY82622.1| transcription termination factor NusA [Helicobacter felis ATCC 49179] Length = 376 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 182/344 (52%), Gaps = 14/344 (4%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + +AYEK + ++V V+ +SI K A++ ++ I+ D +L ++EV Sbjct: 4 ILDIVELIAYEKGLSLEMVKEVVKNSILKVAKNTIDPQANF--MIDDSNKDFTLLHVVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + V + T ++L DPS+ ++ + D R AV + + + ++ Sbjct: 62 CADDDPRLVADPTNTLALTEVLKDDPSLKPNDLLHYEISLKDMKRGAVNALFKDLEFNIQ 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + D+ + ++K + I+ G V ++ N V++ V+ I E+ + GD + Sbjct: 122 RSLEDQYFQKYKGMLNTIVRGVVLDIDKNQNTFVEIEGVQAVLALRNRIKGESFKVGDTL 181 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + V ++G + LSRT P+F+ L H+EVPEI + +++ ++R PG RAKLA+ Sbjct: 182 RAILKSVHFSKQGLVLELSRTTPKFLEALLHLEVPEIADKEIEIMGIARIPGDRAKLALR 241 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL- 301 S + IDP+GA VG++G R+ A+ EL +E ID V ++ ++ NAL PA + K+ L Sbjct: 242 SHNVHIDPIGATVGVKGIRINAISKELCNESIDCVHYNEVPEIYIANALSPANIVKIELS 301 Query: 302 -----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTID 340 D+ V + +Q S AIG+ G NVRLA LTG+ ID Sbjct: 302 QKTLEDKIQKNALVTLQADQKSKAIGKSGVNVRLACMLTGYEID 345 >gi|78777942|ref|YP_394257.1| transcription elongation factor NusA [Sulfurimonas denitrificans DSM 1251] gi|78498482|gb|ABB45022.1| NusA antitermination factor [Sulfurimonas denitrificans DSM 1251] Length = 380 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 185/367 (50%), Gaps = 13/367 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I +A+A EK + D V + + + A+ + + IN +T I + + + V Sbjct: 4 ILDIVEAIANEKGLKSDKVKEALKAAFIQTAKRIINSKFAFEAVINTQTKTIDIIQTITV 63 Query: 69 VEEVENYTCQ-------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V + + IS+ AR+ D +++ + P ++GR A + I Sbjct: 64 VSDSDERLKDEEIAPAYISITEAREYDDQVELDDQLQIPHDLEEYGRTAASQLHREIEYH 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGD 180 ++ D + ++K K+G +++G V RV+ N +++ V+ I E + GD Sbjct: 124 IQRVVEDEIFNKYKSKIGSLVNGRVTRVDNQNSTYIEIDEIRAVLPIKNRIKGEIFKVGD 183 Query: 181 RVKSYIYDVRREQ-RGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K+ + V + G Q+ LSRT P+F+ +L +EVPEI +G V V+ +R PG RAK+ Sbjct: 184 HLKAVVRRVDMNKENGIQIELSRTSPKFLEELLALEVPEISDGTVIVERSARIPGERAKV 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 A+FS+ +D VGA VG++G R+ AV EL E ID + ++ F+ + PAI++ V Sbjct: 244 ALFSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFISRIMSPAIISNV 303 Query: 300 VLDEDVG----RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDF 355 + +D + + +P +Q S AIG+ G N+RLAS L+G I+++ + Sbjct: 304 EILKDENGEAQKAIITLPTDQKSKAIGKNGINIRLASMLSGLNIELVESDVKVAQMSDMQ 363 Query: 356 NERTQFF 362 + + Q Sbjct: 364 DNKEQKE 370 >gi|86151767|ref|ZP_01069981.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 260.94] gi|315124006|ref|YP_004066010.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841396|gb|EAQ58644.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017728|gb|ADT65821.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 362 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E + Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNTISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|86153795|ref|ZP_01071998.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842756|gb|EAQ59968.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 362 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL P+IV V + Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPSIVNSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E + Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|309804431|ref|ZP_07698499.1| transcription termination factor NusA [Lactobacillus iners LactinV 09V1-c] gi|308166244|gb|EFO68459.1| transcription termination factor NusA [Lactobacillus iners LactinV 09V1-c] Length = 248 Score = 222 bits (567), Expect = 8e-56, Method: Composition-based stats. Identities = 102/232 (43%), Positives = 148/232 (63%), Gaps = 2/232 (0%) Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP 178 +Q++REAER E+ E+I+GTV+RV+ V + +GN + V+ ++ + E +P Sbjct: 1 MQRLREAERAHIIEEYSQYQNELITGTVERVDNRFVYIKIGNVEAVMPHNDQMPGEVYKP 60 Query: 179 GDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAK 238 DR+K + V + +G Q+ +SRT P + +LF EVPE+YNG V++ +++R+ G R K Sbjct: 61 QDRIKVLVTKVGSDAKGTQITVSRTAPGLVKRLFEQEVPEVYNGTVEIISIAREAGDRTK 120 Query: 239 LAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK 298 +AV SSD +IDPVG VG +GSRVQ +V EL E ID+V + D + ++ NAL PA V Sbjct: 121 IAVKSSDPNIDPVGTLVGPKGSRVQNIVNELSGENIDVVKYEEDPSDYIANALNPAEVIA 180 Query: 299 VVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 V E D VIVP QLSLAIG++GQNVRLA++LT + IDI E + Sbjct: 181 VQFGEANDDKSALVIVPDYQLSLAIGKKGQNVRLAARLTEYKIDIKPESQVE 232 >gi|153951003|ref|YP_001398503.1| transcription elongation factor NusA [Campylobacter jejuni subsp. doylei 269.97] gi|152938449|gb|ABS43190.1| transcription termination factor NusA [Campylobacter jejuni subsp. doylei 269.97] Length = 362 Score = 222 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VADNDERLQNKSESFIALSKAKVEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E + Sbjct: 298 -EDKKAIVNLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSHLNNAISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|57237514|ref|YP_178528.1| transcription elongation factor NusA [Campylobacter jejuni RM1221] gi|205355336|ref|ZP_03222107.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8421] gi|283955882|ref|ZP_06373372.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 1336] gi|57166318|gb|AAW35097.1| transcription termination factor NusA [Campylobacter jejuni RM1221] gi|205346570|gb|EDZ33202.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8421] gi|283792542|gb|EFC31321.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 1336] gi|315057880|gb|ADT72209.1| Transcription termination protein NusA [Campylobacter jejuni subsp. jejuni S3] Length = 362 Score = 222 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E + Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|86149201|ref|ZP_01067433.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596851|ref|ZP_01100087.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 84-25] gi|121612185|ref|YP_001000167.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|167005125|ref|ZP_02270883.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|218562115|ref|YP_002343894.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840559|gb|EAQ57816.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni CF93-6] gi|87250165|gb|EAQ73123.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 81-176] gi|88190540|gb|EAQ94513.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359821|emb|CAL34608.1| transcription termination factor [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925727|gb|ADC28079.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni IA3902] gi|315928212|gb|EFV07529.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930003|gb|EFV09146.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 305] Length = 362 Score = 222 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 106/366 (28%), Positives = 193/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ GTV RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 239 ANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E + Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|197294650|ref|YP_001799191.1| transcription elongation factor NusA [Candidatus Phytoplasma australiense] gi|171853977|emb|CAM11940.1| Transcription elongation factor [Candidatus Phytoplasma australiense] Length = 357 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 173/346 (50%), Gaps = 9/346 (2%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 D ++ E+ + ++ V+ + + + RV + ++ L++ VV+E Sbjct: 10 LDKISQERDLPKEEVVEAFTKGLIAGCKKN-NRVKSCRVHLKENKNEVLLYKQFIVVDET 68 Query: 73 E------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 ISL+ A+ +G V+ + P DF A++ K +++ + + Sbjct: 69 NANTINLKEWTPISLEEAQKIKLHAKVGQVLEIKVNPKDFNLYAIKEFKNQFNEELTKRK 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185 R+ Y FK + G++IS V ++L ++ + ET G+R++ + Sbjct: 129 RESVYQFFKQQEGKLISAKVISENEKFYNLELEKEIATLLLKKETSGNNLPHIGERIQVF 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + +VR+ + P++ +S H +VK+F +PEI GIV++ ++R G R K+ + S D Sbjct: 189 LLEVRKTSKWPKIFVSHNHVGLVVKVFEENIPEIQEGIVKIMTIARISGERTKIGLVSYD 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DED 304 +DP+G+C+G R++ ++ L+ EKID+ WS D + NALRPA V++ ++ Sbjct: 249 PQVDPIGSCIGENSDRIRNIIKILKGEKIDLFRWSEDEKELISNALRPAQCIDVIIKNDR 308 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 I+P +Q SLAIG+ G+NV+LA+++T W IDI T Sbjct: 309 NKHALAIIPDDQFSLAIGKLGKNVKLAAEVTKWNIDIKTLSHAKKE 354 >gi|145220365|ref|YP_001131074.1| transcription elongation factor NusA [Prosthecochloris vibrioformis DSM 265] gi|145206529|gb|ABP37572.1| NusA antitermination factor [Chlorobium phaeovibrioides DSM 265] Length = 551 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 205/396 (51%), Gaps = 29/396 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++VEEV+ +ISL+ R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S+++G + P+ ++ R ++Q KQ + +KVR+ ER Y E +KVGE+++ Sbjct: 103 KIDESLEVGDFYEEGPIKLDEYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSY------------- 185 V +V VI + V+ + E + ++N R R+K Y Sbjct: 163 AEVYQVRSNEVIFTYNTTKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKIRL 222 Query: 186 ----IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 I + + G +V++SR +F+ KLF EVPEI +G++ +K ++R PG RAK+AV Sbjct: 223 EDGTIEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ AL+PA + + + Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYNDEPQVYISRALQPAKIDPLTV 342 Query: 302 --DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ I++ + D + Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIEVYRDVIDKSMEDPTDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + + + + L+ G + + + EI Sbjct: 403 E---FREEFGDDMIYQLLDAGLDTAKRVLKAGVDEI 435 >gi|157414753|ref|YP_001482009.1| transcription elongation factor NusA [Campylobacter jejuni subsp. jejuni 81116] gi|157385717|gb|ABV52032.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 81116] gi|307747392|gb|ADN90662.1| Transcription termination factor NusA [Campylobacter jejuni subsp. jejuni M1] gi|315931099|gb|EFV10073.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 327] Length = 362 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 192/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ GTV RV+ N +++ + R I E + GD Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVA 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ ++IDPVGA VG++G R+ AV EL +E ID + ++ +S + AL PAIV V + Sbjct: 239 ANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ +N E + Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|284931121|gb|ADC31059.1| transcription elongation factor NusA [Mycoplasma gallisepticum str. F] Length = 622 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 118/479 (24%), Positives = 215/479 (44%), Gaps = 33/479 (6%) Query: 2 VSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 +S + L+ VA K+I + + +++ D+I +A I V I+ + G + Sbjct: 1 MSVDNKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLK 59 Query: 62 LFRLLEVV-----EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 +F+L +V+ EE + +I L+ A +P+I +G L DF RV + Q Sbjct: 60 IFKLYKVIDDSVGEEEFDEINEIHLRDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQ 119 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRE 174 QK+ E + E+ K+ +I+ GTV++ E ++V+LG + + + E Sbjct: 120 YFRQKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGGIYAYYYKRDWVPNE 179 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 L+ + ++ + + +++SR+ ++ + +PEI GIV++KA+ R G Sbjct: 180 ELQNDVEYDFVLTQIKEQSKSWPLVVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAG 239 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTEL---------RDEKIDIVVWSPDSAT 285 + K+AV S++ IDPV +G G R++++ L +E ID+ W+ D Sbjct: 240 QKTKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFK 299 Query: 286 FVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 + NA P + V + ED +++IV + L IGR G NVRL S +TGW+ID Sbjct: 300 LIANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFK 359 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEI-----IAHLLVAEGFADVEELACVKISEIAS 397 ++ + A+ VD+ + + F VE + I+ + Sbjct: 360 SQSAAIEDNINVVPLNYSPVDNAVLVDQFKRNSRRTKIASKQPFKKVETVQTPLIAYSTA 419 Query: 398 IEGFDEETAV--EIQGRAREYLEGIDITLQKKIRELGVSEELCSI-----PGIDSKIKV 449 +EG D+ +I A+E I L K + V ++L GI+ ++ V Sbjct: 420 VEGDDDIKVDFQKIYEEAKE-PRYEMIDLTKYQPKPVVQDDLEEYQPELGDGIEDELVV 477 >gi|319441434|ref|ZP_07990590.1| transcription elongation factor NusA [Corynebacterium variabile DSM 44702] Length = 344 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 187/362 (51%), Gaps = 31/362 (8%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 L A+ + + + ++ ++ ++ + R L RVEI+ G + + R Sbjct: 5 LSALKALEDMEHVQEESLIRAISFALLDSYRELTKVEDRARVEIDRVDGTVRVLRS---- 60 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 + D ++ G D P DFGR A ++ + I +V A + Sbjct: 61 ----------------EIDDDGNVTGEFDD--TPTDFGRDAARAVRDAIRGQVNAARAET 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDGVIRRDETISRENLRPGDR 181 Y ++ G ++SG V R N +V LG DG+I E I E L GDR Sbjct: 103 SYGKYSALEGTVVSGVVSRDARANERGLTVVHLGTEADGHDGMILTAEHIPGEKLEHGDR 162 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 VK Y+ V R QRG Q+LLSRTHP+ + LF +EVPE+ + V++ ++R+ G R+K+AV Sbjct: 163 VKCYVTAVHRGQRGIQILLSRTHPELVRGLFALEVPEVADEAVEIAGIAREAGHRSKVAV 222 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + ++ GAC+G RG RV +++ L EKIDIV +S D A +V NAL PA V +V + Sbjct: 223 RSTVNGLNAKGACIGPRGQRVTSIMDALGGEKIDIVDYSEDPAVYVGNALAPAKVVRVDV 282 Query: 302 -DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 D D+ +VP QLSLAIGR GQN RLA++LTGW IDI E + + + T+ Sbjct: 283 TDHDMQVARAVVPDHQLSLAIGREGQNARLAARLTGWKIDIRPESDPAETGEAGEYRDTR 342 Query: 361 FF 362 Sbjct: 343 ED 344 >gi|162447183|ref|YP_001620315.1| transcription elongation factor NusA [Acholeplasma laidlawii PG-8A] gi|161985290|gb|ABX80939.1| transcription termination factor [Acholeplasma laidlawii PG-8A] Length = 358 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 174/346 (50%), Gaps = 9/346 (2%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 + VA + ++++ V + A + G + RVE E ++ ++ V+ E Sbjct: 10 IEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYGQYYVLPEG 68 Query: 73 E------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126 E + L+ A+ S G ++ + P +F A + K + + + + Sbjct: 69 ELNLELDKKYTFLKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRFNEVLNQIK 128 Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSY 185 ++ Y KD E+++ V E +++ ++ + E + + GDR+K Y Sbjct: 129 KENIYQGLKDLQYEMVTARVLEEEKDFYRIEINKDVITMLPKKEALPTDKFHVGDRIKVY 188 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV + +GP++ +SRTH + +L VPEI +G ++V ++RDPG R+K+ + S++ Sbjct: 189 VTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRSKVGLKSNN 248 Query: 246 SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDED 304 ++D +GA VG G R++ + L EKID+ WS + + N+L+PA V V ++ Sbjct: 249 ENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVVAVTRVNPK 308 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 IVP QLSLAIG+ GQNV+LA Q +GW+IDI +E + Sbjct: 309 EKSALAIVPDAQLSLAIGKLGQNVKLAVQASGWSIDIKSETTAAEE 354 >gi|254457123|ref|ZP_05070551.1| transcription termination factor NusA [Campylobacterales bacterium GD 1] gi|207085915|gb|EDZ63199.1| transcription termination factor NusA [Campylobacterales bacterium GD 1] Length = 377 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 181/356 (50%), Gaps = 13/356 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I DA+A+EK + + VL + + + A+ + I+ T I + + + V Sbjct: 4 ILDIVDAIAHEKGLQPEKVLEALKTAFVQTAKRVIDRNFAFEASIDESTKSIEIVQTITV 63 Query: 69 VEE-------VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 + + E IS+ AR+ D +++ + P ++GR + I Sbjct: 64 LADDDQRLQDEEVAPAYISITDAREYDDQVELEDQLQVPHDLEEYGRTGASQLHREIEYH 123 Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGN-VIVDLGNSDGVIRRDETISRENLRPGD 180 ++ D + ++K K+G +++G V V+ N +++ ++ I E + GD Sbjct: 124 IQRLVEDELFNKYKSKIGSLVTGRVTSVDSHNATYIEVDEVRAILPMKSRIKGEVFKKGD 183 Query: 181 RVKSYIYDVR-REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 +K+ + V ++ G Q+ LSRT P+F+ +L +EVPEI +G+V V+ +R PG RAK+ Sbjct: 184 HLKAVVRRVNLDKENGIQIELSRTSPKFLEELLALEVPEIADGVVIVERSARIPGERAKI 243 Query: 240 AVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV 299 A+ S+ +D VGA VG++G R+ AV EL E ID V ++ F+ + PAI++ V Sbjct: 244 ALLSTHPQVDAVGATVGVKGVRINAVSQELIGENIDCVEYTTIPELFISRVMSPAIISHV 303 Query: 300 VL----DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINR 351 + D + + + +P +Q S AIG+ G N+RLAS LTG I+++ + Sbjct: 304 EIIRNEDGEAEKAIITLPADQKSKAIGKSGINIRLASMLTGLNIELVENNTVTTED 359 >gi|284992351|ref|YP_003410905.1| NusA domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065596|gb|ADB76534.1| NusA domain protein [Geodermatophilus obscurus DSM 43160] Length = 524 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 26/240 (10%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 AV EK I D V+ + ++ A R G +RV ++ +TG++++ Sbjct: 7 ALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVL-------- 58 Query: 72 VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQY 131 A++ P ++ V P DFGR+A +AKQVI+Q++R+AE ++ + Sbjct: 59 ------------AQELGPDGEV--VREWDDTPSDFGRIAASTAKQVIVQRLRDAEHEQTF 104 Query: 132 LEFKDKVGEIISGTVKRVEYGN----VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 E+ K G+I+SG V+ + N V+VD+G + V+ E + E+ G R+++Y+ Sbjct: 105 GEYAGKEGDIVSGIVQADQRRNASGTVLVDIGKVEAVLPAAEQVPGESYPHGSRLRAYVV 164 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V R RGPQV +SRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV +S Sbjct: 165 SVARTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRTSVPR 224 >gi|114777565|ref|ZP_01452546.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] gi|114552036|gb|EAU54553.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] Length = 235 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 100/234 (42%), Positives = 155/234 (66%), Gaps = 1/234 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 +E+LQ+ADAVA EKS+DR++VL M +++ AAR Y ++ EI+ +TG+I LF + Sbjct: 2 NVEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTYPG-LNVEAEIDRDTGEIRLFHV 60 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VEEVE+ +++++ A+ +G L P++ GR+A Q+AKQVI QK+REA Sbjct: 61 RVAVEEVEDQDNELTVEEAQALRDDAVLGSEFRTALAPIELGRIAAQTAKQVINQKIREA 120 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSY 185 ER+R E++ +VGE+I+G VKRVE GNV VDLG + V+ R++ + RE R GDRV++Y Sbjct: 121 ERERVIAEYEPRVGELITGIVKRVERGNVYVDLGRGEAVMYREDLLPRETFRQGDRVRAY 180 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + +VR + +GP V +SR+ +++LF EVPEI +G V ++ + P A+L Sbjct: 181 LREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234 >gi|315638400|ref|ZP_07893578.1| transcription termination factor NusA [Campylobacter upsaliensis JV21] gi|315481528|gb|EFU72154.1| transcription termination factor NusA [Campylobacter upsaliensis JV21] Length = 358 Score = 217 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 192/360 (53%), Gaps = 13/360 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V + ++ A+ +YG + V + +T +SL++ + + Sbjct: 4 IADIIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFV--DKKT--LSLYQKILI 59 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + EN I++ A+ ++IG ++ + GR AV + + + ++ Sbjct: 60 VADDDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ G+V RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G+V V +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKMELSRTSPKFLECLLEAEVPEIKDGLVSVVKCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V + Sbjct: 239 ANSSNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + V + EQ S AIG+ G N+RL S L+G+ I++ +I+ ++ F Sbjct: 298 -EDKTAIVSLNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDLF 356 >gi|237751824|ref|ZP_04582304.1| transcription termination factor NusA [Helicobacter bilis ATCC 43879] gi|229373190|gb|EEO23581.1| transcription termination factor NusA [Helicobacter bilis ATCC 43879] Length = 384 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 183/371 (49%), Gaps = 10/371 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I + +A E + +D V+ + DS+ K A+ ++ V + ++ L + + V Sbjct: 4 ILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKMIV 63 Query: 69 VEEV----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 ++ + + I L AR +++ G + + R AV + I ++++ Sbjct: 64 CDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQIQK 123 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 F+ +G I+ G V V+ N +++G + ++ I E + G V+ Sbjct: 124 LNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGETRAILSLKNRIKGEKFKVGQPVR 183 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 S + VR + G ++ LSRT P+ + +L +EVPEI +G V + ++R PG +AK+A+++ Sbjct: 184 SILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVALYT 243 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-- 301 ++ IDP+G+ VG RG R+ AV EL E ID + +S FV +L PA V V L Sbjct: 244 NNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVKLQK 303 Query: 302 ---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNER 358 +E+ + V + K Q S AIG+ G N+RLAS LTG+ ++ + + + Sbjct: 304 ADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFELQEVADKPSEQITTKDST 363 Query: 359 TQFFMQAINVD 369 + + + ++ Sbjct: 364 EKDEDKKLGLE 374 >gi|291276369|ref|YP_003516141.1| transcription termination factor [Helicobacter mustelae 12198] gi|290963563|emb|CBG39395.1| transcription termination factor [Helicobacter mustelae 12198] Length = 369 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 191/364 (52%), Gaps = 6/364 (1%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + I + +AYEK I D+VL ++ + I K A+ VE +P+ + L L V Sbjct: 1 MDIIEIIAYEKGIPYDMVLDIVKNLIIKTAKQEINEEIQYSVEESPKEKTLKLIHNLTVC 60 Query: 70 EEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVRE 124 + + + I+LK A++ D S+ IG ++ L + R V Q + +++ Sbjct: 61 SDEDEKAENDKHHFIALKDAKNIDASLSIGDIIKSELTLENMSRGTVNKIFQDLEYQLQR 120 Query: 125 AERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNSDGVIRRDETISRENLRPGDRVK 183 + ++ + FK+K+G+I+SG V V+ N +++ + ++ I E + GD + Sbjct: 121 SMEEQLFKSFKEKIGKIVSGVVLEVDAQENTFIEIHDIRAILPLKNRIKGERFQNGDTIS 180 Query: 184 SYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFS 243 + + V+ ++ G + LSRT P+ + +L +EVPEI +G V ++ +R PG RAK+AVFS Sbjct: 181 AILKFVKMDKNGIYLELSRTTPKMLEELLMLEVPEIKDGEVIIQKTARIPGDRAKVAVFS 240 Query: 244 SDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE 303 ++ ID +G+ VG++G R+ AV +L E ID + +S F+ AL PA + V + + Sbjct: 241 TNPKIDAIGSTVGVKGVRINAVGRQLNGENIDCIEYSDVPEIFITRALAPANIINVQIKQ 300 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + +V + Q S AIG+ G N+RL S LTG+ I+I E+ K+ + + Sbjct: 301 EELIAKVKLMASQKSKAIGKNGVNIRLVSMLTGYNIEIEEIAEEIKENTKEEATTHKLGI 360 Query: 364 QAIN 367 A+ Sbjct: 361 GALE 364 >gi|57242307|ref|ZP_00370246.1| transcription termination factor NusA [Campylobacter upsaliensis RM3195] gi|57016987|gb|EAL53769.1| transcription termination factor NusA [Campylobacter upsaliensis RM3195] Length = 358 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 191/360 (53%), Gaps = 13/360 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V + ++ A+ +YG + V + +T +SL++ + + Sbjct: 4 IADIIESIANEKNLELESVKDKVITALINTAKKIYGEEYEFFV--DKKT--LSLYQKILI 59 Query: 69 VEEV-----ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + EN I++ A+ ++IG ++ + GR AV + + + ++ Sbjct: 60 VADDDERLDENKESFIAISKAKKEAKDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ G+V RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFDKYKNKVGQMVFGSVVRVDSEENTYIEIDELRAFLPRKNRIKGEKFKVGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V V +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKMELSRTSPKFLECLLEAEVPEIKDGFVSVVKCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ S+IDPVGA VG++G R+ AV E+ +E ID + +S ++ + AL PAI+ V + Sbjct: 239 ANSSNIDPVGATVGVKGVRINAVSKEIHNENIDCIEYSSENEILIARALAPAIINSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + V + EQ S AIG+ G N+RL S L+G+ I++ +I+ ++ F Sbjct: 298 -EDKTAIVSLNSEQKSKAIGKNGINIRLTSMLSGFEIELKELGAKTISNEEAMKNLQDLF 356 >gi|283954248|ref|ZP_06371772.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 414] gi|283794266|gb|EFC33011.1| transcription termination factor NusA [Campylobacter jejuni subsp. jejuni 414] Length = 362 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 103/366 (28%), Positives = 191/366 (52%), Gaps = 13/366 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A EK+++ + V +A ++ A+ +YG + V +P+ ++L++ + + Sbjct: 4 IADIIESIASEKNLNLENVRERVATALINTAKRIYGQEYEFFV--DPKN--LNLYQKITI 59 Query: 69 VEEVEN-----YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 V + + I+L A+ P ++IG ++ + GR AV + + + ++ Sbjct: 60 VTDNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQ 119 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + + ++K+KVG+++ G+V RV+ N +++ + R I E + GD V Sbjct: 120 KLLEQTIFEKYKNKVGQMVFGSVVRVDNEENTYIEIDELRAFLPRKNRIKGEKFKIGDVV 179 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 K+ I V +G ++ LSRT P+F+ L EVPEI +G V + +R PG RAK+ + Sbjct: 180 KAVIRRVYT-DKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNIVGCARIPGERAKIILQ 238 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 ++ +IDPVGA VG++G R+ AV EL +E ID + + +S + AL PAI+ V + Sbjct: 239 ANGVNIDPVGATVGVKGVRINAVSKELHNENIDCIESTNESEILISRALAPAIINSVKI- 297 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 + + V + EQ S AIG+ G N+RLAS L+G+ I++ ++ E + Sbjct: 298 -EDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELSSSQVSNTISNEEAMKNL 356 Query: 363 MQAINV 368 + Sbjct: 357 QDLFKI 362 >gi|222823361|ref|YP_002574935.1| transcription elongation factor NusA [Campylobacter lari RM2100] gi|222538583|gb|ACM63684.1| transcription elongation factor NusA [Campylobacter lari RM2100] Length = 363 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 189/353 (53%), Gaps = 13/353 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG-DISLFRLLE 67 + I +++A EK++ + V + ++ A+ +YG + V ++G ++ L++ + Sbjct: 4 ITDIIESIANEKNLQIEDVRERVKKALINTAKKIYGDKYEFFV----DSGKNLQLYQKIV 59 Query: 68 VV-EEVENYTCQ----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKV 122 VV ++ E + I+L AR ++IG ++ + GR AV + + + Sbjct: 60 VVSDDDERLESENEHFIALSKARAEAKDVEIGDELTYECSLENLGRTAVNILHKELEYNI 119 Query: 123 REAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDR 181 ++ ++ Y +++ VG ++ G+V RV+ N V++ + R I E + GD Sbjct: 120 QKLLEEKIYEKYQKMVGHMVFGSVVRVDSEENTYVEIDEFRAYLPRKNRIKGEKFKVGDV 179 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ I V ++ G ++ LSRT P+F+ L EVPEI +G++ + A +R PG RAK+ + Sbjct: 180 IKAVIRHVYIDKSGMRMELSRTSPKFLEALLKAEVPEIKDGLINIYASARIPGERAKIIL 239 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++ S+D VGA VG++G R+ AV EL++E ID + +S + A + +L PAI+ V + Sbjct: 240 QANSPSVDAVGATVGIKGVRINAVSKELKNENIDCIEYSNEMAILITRSLAPAIINSVSI 299 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 + + V + EQ S AIG+ G N+RLAS L G+ I++ + ++ Sbjct: 300 --EDKKAIVTLNSEQKSKAIGKSGINIRLASMLLGYEIELNEINNEDKTNNQE 350 >gi|260578921|ref|ZP_05846824.1| N utilization substance protein A [Corynebacterium jeikeium ATCC 43734] gi|258602895|gb|EEW16169.1| N utilization substance protein A [Corynebacterium jeikeium ATCC 43734] Length = 292 Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 170/313 (54%), Gaps = 32/313 (10%) Query: 52 EINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 +I+P +G++++++ VE+ E + + + I P +FGR Sbjct: 2 DIDPISGEVTIYQ----VEKDE------------EGNVTGRIDDT------PKNFGRDGA 39 Query: 112 QSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGN----VIVDLG----NSDG 163 + ++ I +++ A +Y E+ + ++SG V N IV LG DG Sbjct: 40 LAVREAIRFRIKSARVQNRYDEYAELRYRVVSGVVSADARANERGVTIVHLGTEANGQDG 99 Query: 164 VIRRDETISRENLRPGDRVKSYIYD-VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 I E I E L G RVK+++ D + R Q+ LSRTHP+ + LF +EVPE+ +G Sbjct: 100 QILPAEHIPGEELEHGMRVKAFVTDVINNANRMVQINLSRTHPELVKGLFALEVPEVADG 159 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 V++ +V+R+ G R K+AV S+ ++ GAC+G RG RV ++ EL EKIDI+ +S D Sbjct: 160 SVEIVSVAREAGHRTKIAVRSTVKGLNAKGACIGPRGQRVSNIMQELGGEKIDIIDYSDD 219 Query: 283 SATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 ATFV NAL P+ V V + D ++ +VP QLSLAIGR GQN RLA++LTGW IDI Sbjct: 220 PATFVGNALSPSKVVSVKVTDPEMQIARAVVPDYQLSLAIGREGQNARLAARLTGWKIDI 279 Query: 342 ITEEEDSINRQKD 354 +E + + Sbjct: 280 RSETDAAAEDTPS 292 >gi|224438382|ref|ZP_03659309.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] gi|313144824|ref|ZP_07807017.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] gi|313129855|gb|EFR47472.1| transcription elongation factor NusA [Helicobacter cinaedi CCUG 18818] Length = 398 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 105/383 (27%), Positives = 184/383 (48%), Gaps = 25/383 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I D +AY+K +D VVL ++ + + K A+ + VE + + + LF +V Sbjct: 4 ILDIIDLIAYDKGLDNGVVLEIVKNGLIKIAQEEINPLYHYIVEPDVKERILKLFYRKKV 63 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + E+ I L A++ + +G + L + R A+ + ++ Sbjct: 64 CADDVKLTEEDLATSIPLSQAKEFG-DVSVGDELDCELQLDEMSRGAINKLFLNLEYNLQ 122 Query: 124 EAERDRQYLEFKDKVGEIISG-TVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + D+ F+ ++G+I++G V E GN V++ + ++ + I E+ + GD + Sbjct: 123 RSIEDQILQGFRAQLGKIVNGQVVGVDERGNTFVEIDSIRALLPQKNRIKGESFKVGDTI 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + V + G QV LSRT P+F+ +L +EVPEI + V + +R PG RAK+AV+ Sbjct: 183 RAVLKFVGINKNGLQVELSRTTPKFLEELLALEVPEIKDNEVMIFKSARIPGDRAKVAVY 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S++ IDP+G CVG++G R+ AV EL +E ID V + F+ AL PA + V + Sbjct: 243 SNNPRIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFIAKALTPAQILSVKIQ 302 Query: 303 E------------------DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 E + + V++ +Q S AIG+ G N+RLAS L I++ Sbjct: 303 EQNIEQSERENMEGEKEKNERKKAIVLIKSDQKSKAIGKGGVNIRLASMLCDCDIELCEI 362 Query: 345 EEDSINRQKDFNERTQFFMQAIN 367 + + K + T Sbjct: 363 DTPNTGDSKADSNTTTPSENTAQ 385 >gi|289548941|ref|YP_003473929.1| NusA antitermination factor [Thermocrinis albus DSM 14484] gi|289182558|gb|ADC89802.1| NusA antitermination factor [Thermocrinis albus DSM 14484] Length = 327 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 124/347 (35%), Positives = 203/347 (58%), Gaps = 25/347 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 L ++ + VA EK++ +V + +SI A + D+ V++ + I + + Sbjct: 5 LRRLIEQVAKEKNLPEWLVERALRNSIALAVKKSQKIREDVEVQLEDD--HIKAYLVR-- 60 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 R +D +I + + P D R+A +AK+ ++++ AE + Sbjct: 61 ----------------RSKDQTIKL----PIDIEPADMDRIAAYAAKEEFLKELERAEEE 100 Query: 129 RQYLEFKDKVGEIISGTVKR-VEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R YLEF + GEI+ G V++ E G+++VDLG GV+ + E I +E+ + GDR+++ + Sbjct: 101 RSYLEFVELEGEIVVGIVRKVQEDGDLLVDLGKVMGVLPKKEQIPKEHYKVGDRLRALLL 160 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 +VR+ + +++LSRTHP+F+ KL EVPEI G ++V+A++R+PG RAK+ V S+DS Sbjct: 161 EVRKRRGKYEIILSRTHPRFLKKLLEAEVPEIKEGYIKVEAIAREPGERAKVLVSSTDSR 220 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DPVG VG+RGS++ + EL E+ID++ S + +L PA V+ V L + R Sbjct: 221 MDPVGVVVGVRGSKIAPITEELSGERIDVIKKSDSVEELIKRSLAPAPVSAVRLFPEEKR 280 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 EV VPKE+LSLAIG+ G NVRLAS++TGW ID+ +EE+ + Sbjct: 281 AEVAVPKEKLSLAIGKGGVNVRLASKITGWRIDVYSEEDFEKLTKMT 327 >gi|206896456|ref|YP_002247276.1| transcription termination factor NusA [Coprothermobacter proteolyticus DSM 5265] gi|206739073|gb|ACI18151.1| transcription termination factor NusA [Coprothermobacter proteolyticus DSM 5265] Length = 343 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 88/341 (25%), Positives = 160/341 (46%), Gaps = 18/341 (5%) Query: 13 ADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEV 72 +A + + ++ + D++ A R + + +++ E Sbjct: 17 IRQIASDLDLTPQEIIEALKDALVSAIRKELDIPKEA------------VGSAIKIEENG 64 Query: 73 ENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 + ++ + + + PL + RV++Q+A+ + ++ E +++ Sbjct: 65 SSLKFLVNKDFVKTIPEDEAVSDWIEFPLS--NLSRVSIQTAENTLKNRMNEKSKEKAIK 122 Query: 133 EFKDKVGEIISGTVKRVEYGN--VIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR 190 GE+++ V R + + +D+ + V+ E + + PGD ++ + + Sbjct: 123 RIAQFSGEVVTARVIRRDPKTKLIYMDVDGVECVLEPSEQLPTDRYAPGDSLRCLVLGAK 182 Query: 191 REQRGPQ-VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSID 249 Q V LSR+ P + LF +EVPE+ +G+V++ ++R PG R+K+AV S D +D Sbjct: 183 NIPMYGQGVALSRSSPDLLKLLFTLEVPEVADGVVRIMGIARKPGRRSKVAVMSIDPRLD 242 Query: 250 PVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRI 308 P GAC+G +G R+QA+ L +EKID+V W D A + N L P V KV + D R Sbjct: 243 PQGACIGYKGQRIQAISRSLANEKIDVVRWDTDPAKLIANVLSPGKVDKVEVLDPKNKRA 302 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 V + + + +G G+NV LA QLTGWTID+ D Sbjct: 303 LVYTTPDNIKVVVGEDGENVELAEQLTGWTIDVREGGPDED 343 >gi|114777564|ref|ZP_01452545.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] gi|114552035|gb|EAU54552.1| transcription elongation factor NusA [Mariprofundus ferrooxydans PV-1] Length = 254 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 111/271 (40%), Positives = 158/271 (58%), Gaps = 19/271 (7%) Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+D S+DPVGACVGMRG+RVQAVV EL EKIDI+ W+ D A FV+NAL PA + +V++D Sbjct: 3 STDPSVDPVGACVGMRGARVQAVVNELHGEKIDIIEWTDDPAAFVVNALAPAEIERVMVD 62 Query: 303 EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 E IE V +E L++AIGRRGQNVRLAS L+GW I++++ E+ R ++ + F Sbjct: 63 EATNTIEAAVSEENLAIAIGRRGQNVRLASDLSGWHIELMSTGEEKERRHEEVVKARTVF 122 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 + ++VDE A +LV EGF +EELA +IA+IEG D E A E+Q RAR L + Sbjct: 123 QEGLDVDEAFATVLVDEGFFSLEELAYCAAEDIAAIEGLDAEIAQELQKRARNVLLDQAL 182 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 E G + L +PG+ +I L + T+E LA + D++ Sbjct: 183 KQGS--EEAGSAVTLLDLPGMTREIAEQLAAREMTTVESLADAAGDEIEDIE-------- 232 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIE 513 G +++ +++II AR GW + Sbjct: 233 ---------GLSREEADALIIAAREACGWFD 254 >gi|32266771|ref|NP_860803.1| transcription elongation factor NusA [Helicobacter hepaticus ATCC 51449] gi|32262823|gb|AAP77869.1| transcription termination factor NusA [Helicobacter hepaticus ATCC 51449] Length = 375 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 177/345 (51%), Gaps = 11/345 (3%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 +L I D +AY+K ++ VL ++ + + K A+ D VE + + + LF ++V Sbjct: 4 ILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRMKV 63 Query: 69 VEEVENYTCQ-----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 + ++ + + + L A+ + IG V L R A+ + ++ Sbjct: 64 CADEQDLSEENLGTFLPLSQAKGLG-DVSIGDEVDCELQLDAMSRGAINKLFLNLEYNLQ 122 Query: 124 EAERDRQYLEFKDKVGEIIS-GTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRV 182 + ++ F+ VG+I++ V + GN +++ + ++ + I EN + GD V Sbjct: 123 RSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEIESIRAILPQKNRIKGENFKVGDCV 182 Query: 183 KSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVF 242 ++ + V + G QV LSRT P+F+ +L MEVPEI + V + +R PG RAK+AV+ Sbjct: 183 RAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKVAVY 242 Query: 243 SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD 302 S+ + IDP+G CVG++G R+ AV EL +E ID V + FV AL PA V V ++ Sbjct: 243 SNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSVKIE 302 Query: 303 E----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 E + + V + EQ S AIG+ G N+RLAS L I++ Sbjct: 303 EAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQE 347 >gi|194335549|ref|YP_002017343.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|194308026|gb|ACF42726.1| NusA antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 514 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 122/396 (30%), Positives = 210/396 (53%), Gaps = 29/396 (7%) Query: 26 VVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVAR 85 + ++ D IQK R Y + + INPE GD ++ L ++VEE++ + +I+LK R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVESNIFINPERGDFEVYILKKIVEEIDIESIEITLKEVR 102 Query: 86 DRDPSIDIGGVVSD-PLPPMDF-GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIIS 143 D S++IG + P+ D+ R ++Q KQ + +KVR+ ER Y E +KVGEI++ Sbjct: 103 KIDDSLEIGDYYEEGPIRLEDYLSRKSIQIIKQSVQKKVRDLERLVVYEECLEKVGEIVA 162 Query: 144 GTVKRVEYGNVIVDLG-----NSDGVIRRDETISRENLRPGDRVKSYIYDVRRE------ 192 G V +V VI + V+ + E + ++N R R+K Y+ + RE Sbjct: 163 GEVYQVRANEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKRIEREKAKVRL 222 Query: 193 -----------QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 G +V++SR +F+ KLF EVPEI +G++ +KA++R PG RAK+AV Sbjct: 223 DDGSMVEREKADGGMKVIVSRVDDRFLYKLFEHEVPEILDGLIVIKAIARVPGERAKVAV 282 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 S+ + IDPVGA VG RG R+Q++V EL +E ID++ ++ + ++ A++PA + + + Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYADEPQIYISRAMQPAKIDPLTV 342 Query: 302 DED--VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERT 359 D + V++ +Q+ AIG+ G N+ LA +LTG+ ID+ + D + Sbjct: 343 HADVKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDVIDKSTEDPTDIDII 402 Query: 360 QFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 + + + + L+ G +++ + EI Sbjct: 403 E---FREEFGDDMIYQLLDGGLDTAKKVLKAGVDEI 435 >gi|87042915|gb|ABD16467.1| NusA [Tomato big bud phytoplasma] Length = 319 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 169/315 (53%), Gaps = 9/315 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE------NYTCQISLKVARDRD 88 + + + S ++ + + +I L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIHLKEDKSEIILYKQFLVADEATISTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +V++ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVKKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ +FS D+ ID +G+C+G R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLFSCDAQIDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EKID+ +WS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKIDLFIWSDDPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDI 341 N +LA ++T W IDI Sbjct: 304 NAKLAVEVTKWNIDI 318 >gi|87042921|gb|ABD16470.1| NusA [Tomato yellows phytoplasma] Length = 319 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 170/315 (53%), Gaps = 9/315 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++++ + +I L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDI 341 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDI 318 >gi|87042911|gb|ABD16465.1| NusA [Blueberry stunt phytoplasma] Length = 319 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 93/315 (29%), Positives = 170/315 (53%), Gaps = 9/315 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++++ + +I L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAKQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+CVG R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCVGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKVDLFVWSEDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDI 341 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDI 318 >gi|218513202|ref|ZP_03510042.1| transcription elongation factor NusA [Rhizobium etli 8C-3] Length = 213 Score = 205 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 126/179 (70%), Positives = 157/179 (87%) Query: 20 KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQI 79 K IDR++VL+ MAD+IQKAARS YGT S+IR +INP+TG+I L RLLEVV++ E+Y+ QI Sbjct: 21 KVIDREIVLAAMADAIQKAARSRYGTESNIRADINPKTGEIRLQRLLEVVDKAEDYSTQI 80 Query: 80 SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVG 139 L++ARDR+P +G ++DPLPPMDFGR+A QSAKQVI+QKVREAERDRQ+ EFKD+VG Sbjct: 81 PLELARDRNPDAALGDFIADPLPPMDFGRIAAQSAKQVIVQKVREAERDRQFDEFKDRVG 140 Query: 140 EIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQV 198 EI++GTVKRVEYGNVIVDLG +G+IRRDE I REN+R GDRV++Y+YDVRREQRGPQ+ Sbjct: 141 EIVNGTVKRVEYGNVIVDLGRGEGIIRRDEMIPRENVRYGDRVRAYVYDVRREQRGPQI 199 >gi|13357878|ref|NP_078152.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762445|ref|YP_001752400.1| transcription elongation factor NusA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11356991|pir||H82905 N-utilization substance protein a UU318 [imported] - Ureaplasma urealyticum gi|6899295|gb|AAF30727.1|AE002129_3 N-utilization substance protein a [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168828022|gb|ACA33284.1| transcription termination factor NusA [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 202/448 (45%), Gaps = 31/448 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ A + I+ +V+ S++ ++ +KA + + I+ + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYLRTHPGE-NFETNIDLKQGTINCFRNLV 67 Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VVE + + +I L AR + + IG ++ + +F + V + Sbjct: 68 VVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVGQIGSL 127 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167 + QK+ E R +K + ++I V +R E V V+L + G + R Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTLGYLSR 187 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG +++K Sbjct: 188 KDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNGNIEIK 247 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D F+ Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADDKRIFI 307 Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NA+ + +++ E+ IV K+ L IGR G N+RL +++T W ID+ T Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNIDVKTI 367 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E+ + + + + + E LA + E IE D + Sbjct: 368 EQAFEENILYEKFDEKIYRS------WNIESINKKNVTNDEMLALIDSIEDDKIEQ-DVQ 420 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELG 432 ++ + ++ + D + +L Sbjct: 421 LNHPLKQQEKKVVSSNDEDGENDETQLE 448 >gi|171920241|ref|ZP_02931610.1| transcription termination factor NusA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508804|ref|ZP_02958262.1| transcription termination factor NusA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701622|ref|ZP_02971327.1| transcription termination factor NusA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902640|gb|EDT48929.1| transcription termination factor NusA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675756|gb|EDT87661.1| transcription termination factor NusA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700854|gb|EDU19136.1| transcription termination factor NusA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 458 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 202/448 (45%), Gaps = 31/448 (6%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ A + I+ +V+ S++ ++ +KA + + I+ + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIEFEVLSSIIKEAFEKAYSRTHPGE-NFETNIDLKQGTINCFRNLV 67 Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VVE + + +I L AR + + IG ++ + +F + V + Sbjct: 68 VVENEKVHNEDLETCLDDAVEILLDDARKINANAQIGDLIKQHISIDNFKSIEVGQIGSL 127 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167 + QK+ E R +K + ++I V +R E V V+L + G + R Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEVNYNKQRNEITGVKVELDDQWKTLGYLSR 187 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + I E + G+ I +V+ + R +LLSRT P+ + ++ EV +I NG +++K Sbjct: 188 KDRIGDEKFKVGETYDFLIKEVKEQSRLWPILLSRTEPELVEEILKREVVDIKNGNIEIK 247 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+IDI+ ++ D F+ Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDIIRYADDKRIFI 307 Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NA+ + +++ E+ IV K+ L IGR G N+RL +++T W ID+ T Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKDDLPSVIGRGGANIRLIAKITEWNIDVKTI 367 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 E+ + + + + + E LA + E IE D + Sbjct: 368 EQAFEENILYEKFDEKIYRS------WNIESINKKNVTNDEMLALIDSIEDDKIEQ-DVQ 420 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELG 432 ++ + ++ + D + +L Sbjct: 421 LNHPLKQQEKKVVSSNDEDGENDETQLE 448 >gi|87042917|gb|ABD16468.1| NusA [Paulownia witches'-broom phytoplasma] Length = 319 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 94/315 (29%), Positives = 171/315 (54%), Gaps = 9/315 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++E+ + +I L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKDEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDI 341 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDI 318 >gi|169302736|gb|ACA53041.1| NusA [Wheat blue dwarf phytoplasma] Length = 317 Score = 203 bits (516), Expect = 7e-50, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 168/314 (53%), Gaps = 9/314 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++++ + +I L++ V +E + I+L+ A+ Sbjct: 4 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 62 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y K + G++IS + Sbjct: 63 PHAKIGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFSKQQEGKLISAKIIS 122 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 123 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 182 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 183 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 242 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 243 ILKGEKVDLFVWSDDPQELIANALKPASCPQVVIKDDINKYALAIVPDDQFSLAIGKLGK 302 Query: 327 NVRLASQLTGWTID 340 NV+LA ++T W I+ Sbjct: 303 NVKLAVEVTKWNIE 316 >gi|166012287|gb|ABY77760.1| transcription factor NusA [Paulownia witches'-broom phytoplasma] Length = 315 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 169/313 (53%), Gaps = 9/313 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++E+ + +I L++ V +E + I+L+ A+ Sbjct: 4 LISGCKKNHKVKS-CKIELKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 62 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF A++ K +++ + +R+ Y FK + G++IS + Sbjct: 63 PHAKIGQVIDIKVDPKDFNLYAIKELKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 122 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 123 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 182 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 183 VVKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 242 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 243 ILKDEKVDLFVWSDDPQELIANALKPASCLQVVIKDDINKYALAIVPDDQFSLAIGKLGK 302 Query: 327 NVRLASQLTGWTI 339 NV+LA ++T W I Sbjct: 303 NVKLAVEVTKWNI 315 >gi|87042919|gb|ABD16469.1| NusA [Strawberry phytoplasma FL4] Length = 319 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 169/315 (53%), Gaps = 9/315 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++++ + ++ L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEMILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P G V+ + P DF AV+ K +++ + +R+ Y FK + G++IS + Sbjct: 64 PHAKTGQVIDIKVDPKDFNLYAVKEFKNQFNEELTKKKRENIYNFFKQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 ++K+ +PEI GIV++ V+R G R K+ + S D+ +D +G+C+G R +R++ V+ Sbjct: 184 VIKVLEENIPEIQEGIVKIAGVARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNVIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+ EK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKGEKVDLFVWSNDPQELIANALKPASCLQVVIKDDINKCALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDI 341 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDI 318 >gi|87042913|gb|ABD16466.1| NusA [Maize bushy stunt phytoplasma] Length = 319 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 90/315 (28%), Positives = 171/315 (54%), Gaps = 9/315 (2%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVEN------YTCQISLKVARDRD 88 + + + S ++++ + +I L++ V +E + I+L+ A+ Sbjct: 5 LISGCKKNHKVKS-CKIQLKEDKSEIILYKQFLVADEATMSTINLKESTPITLEEAQQIK 63 Query: 89 PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKR 148 P IG V+ + P DF AV+ K +++ + +R+ Y F+ + G++IS + Sbjct: 64 PHAKIGQVIDIKVDPKDFNLYAVKELKNQFNEELTKKKRENIYNFFEQQEGKLISAKIIS 123 Query: 149 VEYGNVIVDLGN-SDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQF 207 ++L ++ + E S ++ G+R++ ++ +VR+ + P++ +S H Sbjct: 124 ENDKFYNLELEKEITTLLPKKEIASNNEMQVGERIQVFLSEVRKTTKWPKIFVSCNHVGL 183 Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 +VK+ +PEI GIV++ ++R G R K+ + S D+ +D +G+C+G R +R++ ++ Sbjct: 184 VVKVLEENIPEIQEGIVKIAGIARISGERTKIGLLSCDAQVDAIGSCIGERSNRIKNIIK 243 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQ 326 L+DEK+D+ VWS D + NAL+PA +VV+ D+ IVP +Q SLAIG+ G+ Sbjct: 244 ILKDEKVDLFVWSDDPQELISNALKPASCIQVVIKDDINKYALAIVPDDQFSLAIGKLGK 303 Query: 327 NVRLASQLTGWTIDI 341 NV+LA ++T W IDI Sbjct: 304 NVKLAVEVTKWNIDI 318 >gi|209554499|ref|YP_002284717.1| transcription elongation factor NusA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209542000|gb|ACI60229.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 458 Score = 200 bits (508), Expect = 6e-49, Method: Composition-based stats. Identities = 105/462 (22%), Positives = 201/462 (43%), Gaps = 39/462 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 67 Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VVE + + +I L AR + + IG + + DF + V + Sbjct: 68 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVGQIGSL 127 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167 + QK+ E R +K + ++I V +R E V V+L + G + R Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSR 187 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K Sbjct: 188 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 247 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+ Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 307 Query: 288 INALRPAIVTKVVLDE---DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NA+ + +++ E D IV KE L IGR G N+RL +++T W ID+ Sbjct: 308 ANAIGLDKLKGLLVQENESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 364 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 K + + + DE I + + + +A I+ +E Sbjct: 365 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 413 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445 + + + + T+ + +E + G + Sbjct: 414 KVEKTEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 455 >gi|171920965|ref|ZP_02696343.2| transcription termination factor NusA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179145|ref|ZP_02964862.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024249|ref|ZP_02996946.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518622|ref|ZP_03004069.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524495|ref|ZP_03004495.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273614|ref|ZP_03206149.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551589|ref|ZP_03772535.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171902989|gb|EDT49278.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208924|gb|EDU05967.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018911|gb|EDU56951.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997862|gb|EDU66959.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659708|gb|EDX53088.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249642|gb|EDY74423.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379404|gb|EEH01769.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 458 Score = 199 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 201/462 (43%), Gaps = 39/462 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 67 Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VVE + + +I L AR + + IG + + DF + V + Sbjct: 68 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVGQIGSL 127 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167 + QK+ E R +K + ++I V +R E V V+L + G + R Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSR 187 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K Sbjct: 188 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 247 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+ Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 307 Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NA+ + +++ E+ IV KE L IGR G N+RL +++T W ID+ Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 364 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 K + + + DE I + + + +A I+ +E Sbjct: 365 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 413 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445 + + + + T+ + +E + G + Sbjct: 414 KVEKTEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 455 >gi|195867649|ref|ZP_03079651.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660706|gb|EDX53961.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 460 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 201/462 (43%), Gaps = 39/462 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L Sbjct: 11 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 69 Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VVE + + +I L AR + + IG + + DF + V + Sbjct: 70 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYILIDDFKSIEVGQIGSL 129 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167 + QK+ E R +K + ++I V +R E V V+L + G + R Sbjct: 130 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSR 189 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K Sbjct: 190 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 249 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+ Sbjct: 250 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 309 Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NA+ + +++ E+ IV KE L IGR G N+RL +++T W ID+ Sbjct: 310 ANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 366 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 K + + + DE I + + + +A I+ +E Sbjct: 367 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 415 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445 + + + + T+ + +E + G + Sbjct: 416 KVEKTEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFED 457 >gi|256370754|ref|YP_003108579.1| transcription elongation factor NusA [Candidatus Sulcia muelleri SMDSEM] gi|256009546|gb|ACU52906.1| transcription elongation factor NusA [Candidatus Sulcia muelleri SMDSEM] Length = 342 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 177/324 (54%), Gaps = 3/324 (0%) Query: 28 LSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE--VENYTCQISLKVAR 85 +S++ S + YG + + ++ N + G+I ++R L++V + ++N+ QI + A Sbjct: 19 MSIIKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAI 78 Query: 86 DRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGT 145 ++ IG + + + G+ + S K+ + K ++ +R Q K K+GEII Sbjct: 79 KIKKNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAK 138 Query: 146 VKRVEYGNVIV-DLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTH 204 V + N+ + N+ ++ ++E I E + G+ I V+ + + LSR Sbjct: 139 VDYIINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKD 198 Query: 205 PQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQA 264 F+ KL +E+PEI NG++ +K + R G R+K+A+ S + +IDP+G CVG++GS+++ Sbjct: 199 KNFLKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKN 258 Query: 265 VVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR 324 ++ E+ +E IDI+ +S + ++ ++ PA V + +D + V E++ AIG + Sbjct: 259 IIKEINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNK 318 Query: 325 GQNVRLASQLTGWTIDIITEEEDS 348 N+RLAS+LTG+ I I+ ++ + Sbjct: 319 KTNLRLASKLTGYKIYILNIKKKN 342 >gi|225550916|ref|ZP_03771865.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380070|gb|EEH02432.1| transcription termination factor NusA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 458 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 200/462 (43%), Gaps = 39/462 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E ++ A + I+ +V+ S++ ++ +K + + IN + G I+ FR L Sbjct: 9 EFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRNLV 67 Query: 68 VVEEVE----------NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQV 117 VVE + + +I L AR + + IG + + DF + V + Sbjct: 68 VVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQRISIDDFKSIEVGQIGSL 127 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTV-------KRVEYGNVIVDLG---NSDGVIRR 167 + QK+ E R +K + ++I V +R E V V+L + G + Sbjct: 128 LRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSC 187 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 + I E + G+ I +V+ + R VLLSRT P+ + ++ EV +I NG +++K Sbjct: 188 KDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIK 247 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 ++R G + K+AV ++ +I+PV VG +G + ++ +L +E+ID++ ++ D F+ Sbjct: 248 KIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFI 307 Query: 288 INALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 NA+ + +++ E+ IV KE L IGR G N+RL +++T W ID+ Sbjct: 308 ANAIGLDKLKGLLVQENESGQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDV--- 364 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 K + + + DE I + + + +A I+ +E Sbjct: 365 --------KTIEQAFEENVVYEKFDEKIYR---SWNIESINKKNVTNDEMLALIDNMQDE 413 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDS 445 E + + + T+ + +E + G + Sbjct: 414 KVDENEQVNHQLKQQEKQTIDSNNDDSENDDEQLEYLEGFED 455 >gi|312601531|gb|ADQ90786.1| Transcription termination-antitermination factor nusA [Mycoplasma hyopneumoniae 168] Length = 614 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175 QK+ E R+ Y ++ ++ TV I ++ + S +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ Sbjct: 260 RCKVAIRRTEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 320 SPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379 Query: 349 INRQKD 354 ++ Sbjct: 380 KDQNFK 385 >gi|144227706|gb|AAZ44670.2| N-utilization substance protein A [Mycoplasma hyopneumoniae J] Length = 614 Score = 195 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175 QK+ E R+ Y ++ ++ TV I ++ + S +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ Sbjct: 260 RCKVAIRRNEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 320 SPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379 Query: 349 INRQKD 354 ++ Sbjct: 380 KDQNFK 385 >gi|71893935|ref|YP_279381.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae J] Length = 617 Score = 195 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 23 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 82 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 83 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 142 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175 QK+ E R+ Y ++ ++ TV I ++ + S +N Sbjct: 143 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 202 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 203 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 262 Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ Sbjct: 263 RCKVAIRRNEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 322 Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V + + R V+VP Q SLAIG+ G NV+L + LT + II Sbjct: 323 SPSKVICVKEFKIGHKLRRFIVVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 382 Query: 349 INRQKD 354 ++ Sbjct: 383 KDQNFK 388 >gi|195953996|ref|YP_002122286.1| transcription elongation factor NusA [Hydrogenobaculum sp. Y04AAS1] gi|195933608|gb|ACG58308.1| NusA antitermination factor [Hydrogenobaculum sp. Y04AAS1] Length = 322 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 190/345 (55%), Gaps = 30/345 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + ++ + VA EK I +V + ++I R IR +I ++ Sbjct: 5 IKKLIENVAKEKDIPAKIVEIALKNAIAYGIRK----EKHIRGKI-----------YIDF 49 Query: 69 VEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERD 128 ++ IS + D + D R+A +AK+ ++++ AER+ Sbjct: 50 ADDDTITAYIISGREKTKLD------------ISTEDLNRIAAYAAKEEFLKELENAERE 97 Query: 129 RQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIY 187 R +LE+ + G I+ G V+ + IVDLG D + R E IS+E+ + DRVK+ ++ Sbjct: 98 RGFLEYVSQEGNIVHGIVREITKDQTAIVDLGPIDAELPRREQISKESFKKNDRVKALLF 157 Query: 188 DVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS 247 V++E+ P +LLSRTHP+F+ +L E+PE+ G+V++ +V+R+PG +AK+ V + D Sbjct: 158 SVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGLVKIISVAREPGEKAKVVVDTEDKK 217 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 IDPVG +G++GS++ + EL E ID+V +S D F+ N PA + + + E + Sbjct: 218 IDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDKKKFLENLFFPAKI--LDVRESDNQ 275 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQ 352 IEV V K+Q+SLAIG+RG N +LA ++ G ID++++E+ ++ Sbjct: 276 IEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMSKEDFDKLKK 320 >gi|54020616|ref|YP_116111.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 232] gi|53987789|gb|AAV27990.1| transcription termination-antitermination factor nusA [Mycoplasma hyopneumoniae 232] Length = 614 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 162/366 (44%), Gaps = 20/366 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175 QK+ E R+ Y ++ ++ TV I ++ + S +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ Sbjct: 260 RCKVAIRRTEGAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V + + R V+V Q SLAIG+ G NV+L + LT + II Sbjct: 320 SPSKVICVKEFKIGHKLRRFIVVVTDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379 Query: 349 INRQKD 354 ++ Sbjct: 380 KDQNFK 385 >gi|72080914|ref|YP_287972.1| transcription elongation factor NusA [Mycoplasma hyopneumoniae 7448] Length = 617 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 23 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 82 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 83 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 142 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175 QK+ E R+ Y ++ ++ TV I ++ + S +N Sbjct: 143 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 202 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 203 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 262 Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ Sbjct: 263 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 322 Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V + + R ++VP Q SLAIG+ G NV+L + LT + II Sbjct: 323 SPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 382 Query: 349 INRQKD 354 ++ Sbjct: 383 KDQNFK 388 >gi|144575534|gb|AAZ53949.2| N-utilization substance protein A [Mycoplasma hyopneumoniae 7448] Length = 614 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 163/366 (44%), Gaps = 20/366 (5%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 ++Q VA ++ + V+ + ++I+ + I++E + E +F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 69 V------------EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 V E+V + I L A++ DP I + + S + F + Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGV-IRRDETISREN 175 QK+ E R+ Y ++ ++ TV I ++ + S +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+ G + + I +V + + QV++S Q + K +PE+ + +++ +++R PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 236 RAKLAVFSSD----SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+A+ ++ +I +G+ VG GSRV A+ EL+ EKI+++ + + F++NA+ Sbjct: 260 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 292 RPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 P+ V + + R ++VP Q SLAIG+ G NV+L + LT + II Sbjct: 320 SPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379 Query: 349 INRQKD 354 ++ Sbjct: 380 KDQNFK 385 >gi|15612472|ref|NP_224125.1| transcription elongation factor NusA [Helicobacter pylori J99] gi|11387009|sp|Q9ZJA6|NUSA_HELPJ RecName: Full=Transcription elongation protein nusA gi|4156020|gb|AAD06980.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99] Length = 395 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|317011648|gb|ADU85395.1| transcription elongation factor NusA [Helicobacter pylori SouthAfrica7] Length = 395 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS+++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSNNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSTEEKESIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|217031863|ref|ZP_03437366.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128] gi|298735514|ref|YP_003728035.1| N utilization substance protein A [Helicobacter pylori B8] gi|216946515|gb|EEC25117.1| hypothetical protein HPB128_199g71 [Helicobacter pylori B128] gi|298354699|emb|CBI65571.1| N utilization substance protein A [Helicobacter pylori B8] Length = 395 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|254780024|ref|YP_003058131.1| transcription elongation factor NusA [Helicobacter pylori B38] gi|254001937|emb|CAX30190.1| Transcription elongation protein NusA [Helicobacter pylori B38] Length = 395 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 185/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|261840189|gb|ACX99954.1| transcription elongation factor NusA [Helicobacter pylori 52] Length = 395 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVI--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + ++R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQIKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNTEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|307638171|gb|ADN80621.1| Transcription termination protein [Helicobacter pylori 908] Length = 395 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 98/361 (27%), Positives = 185/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|317014930|gb|ADU82366.1| transcription elongation factor NusA [Helicobacter pylori Gambia94/24] Length = 395 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 98/361 (27%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVI--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS +S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|325996770|gb|ADZ52175.1| Transcription termination protein [Helicobacter pylori 2018] gi|325998365|gb|ADZ50573.1| Transcription termination protein [Helicobacter pylori 2017] Length = 395 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 184/361 (50%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYSVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDKNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS +S IDP+G VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNSRIDPIGTAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDVEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|15646123|ref|NP_208305.1| transcription elongation factor NusA [Helicobacter pylori 26695] gi|2499337|sp|P55977|NUSA_HELPY RecName: Full=Transcription elongation protein nusA gi|2314694|gb|AAD08555.1| transcription termination factor NusA (nusA) [Helicobacter pylori 26695] Length = 395 Score = 191 bits (485), Expect = 3e-46, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ V + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|188528283|ref|YP_001910970.1| transcription elongation factor NusA [Helicobacter pylori Shi470] gi|188144523|gb|ACD48940.1| transcription elongation factor NusA [Helicobacter pylori Shi470] Length = 395 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIGELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|255024911|ref|ZP_05296897.1| transcription elongation factor NusA [Listeria monocytogenes FSL J1-208] Length = 180 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 127/180 (70%) Query: 122 VREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDR 181 VREAER Y EF D+ +I++G V+R + + V+LG + ++ ++E + E DR Sbjct: 1 VREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAILSQNEQMPNETYHAHDR 60 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K Y+ V + +GPQ+ +SRTHP + +LF MEVPEIY+G+V++K+V+R+ G R+K++V Sbjct: 61 IKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDGVVEIKSVAREAGDRSKISV 120 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL 301 ++++ +DPVGACVG +G+RVQ +V EL+ EKIDIV WS D TFV NAL P+ V V++ Sbjct: 121 YTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWSEDPFTFVANALSPSKVLDVIV 180 >gi|317179693|dbj|BAJ57481.1| transcription elongation factor NusA [Helicobacter pylori F30] Length = 395 Score = 190 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++ Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|82407871|pdb|2ASB|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407889|pdb|2ATW|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407891|pdb|2ATW|C Chain C, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex Length = 251 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 9/244 (3%) Query: 133 EFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGDRVKS 184 EF + GEI++G ++R N V+V +G S+GVI E + E+ G+R++ Sbjct: 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRC 61 Query: 185 YIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSS 244 Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ Sbjct: 62 YVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSN 121 Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDE 303 + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL PA V V +D+ Sbjct: 122 VAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQ 181 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 V+VP QLSLAIG+ GQN RLA++LTGW IDI + Q + Sbjct: 182 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAH 241 Query: 364 QAIN 367 + Sbjct: 242 DRLE 245 >gi|317178222|dbj|BAJ56011.1| transcription elongation factor NusA [Helicobacter pylori F16] Length = 395 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ +++V V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMVSKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNTRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAKEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|261838788|gb|ACX98554.1| transcription termination factor A [Helicobacter pylori 51] Length = 395 Score = 190 bits (482), Expect = 6e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLAHYLVI--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKILIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|108563823|ref|YP_628139.1| transcription elongation factor NusA [Helicobacter pylori HPAG1] gi|107837596|gb|ABF85465.1| transcription termination factor [Helicobacter pylori HPAG1] Length = 395 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEV 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|317013286|gb|ADU83894.1| transcription elongation factor NusA [Helicobacter pylori Lithuania75] Length = 395 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGATVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|148925839|ref|ZP_01809526.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8486] gi|145844825|gb|EDK21929.1| transcription termination factor [Campylobacter jejuni subsp. jejuni CG8486] Length = 300 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 156/291 (53%), Gaps = 4/291 (1%) Query: 79 ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 I+L A+ P ++IG ++ + GR AV + + + +++ + ++K+KV Sbjct: 13 IALSKAKSEAPDVEIGDELTYECSLENLGRTAVNTLHKELEYHIQKLLEQTIFEKYKNKV 72 Query: 139 GEIISGTVKRVEYG-NVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQ 197 G+++ GTV RV+ N +++ + R I E + GD VK+ I V +G + Sbjct: 73 GQMVFGTVVRVDNEENTFIEIDELRAFLPRKNRIKGEKFKIGDVVKAVIRRVYT-DKGIK 131 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGM 257 + LSRT P+F+ L EVPEI +G V + +R PG RAK+ + ++ ++IDPVGA VG+ Sbjct: 132 IELSRTSPKFLECLLEAEVPEIKDGYVNIIGCARIPGERAKIILQANGANIDPVGATVGV 191 Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQL 317 +G R+ AV EL +E ID + ++ +S + AL PAIV V + + + V + EQ Sbjct: 192 KGVRINAVSKELHNENIDCIEFTNESEILISRALAPAIVNSVKI--EDKKAIVSLNSEQK 249 Query: 318 SLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 S AIG+ G N+RLAS L+G+ I++ +N E + + Sbjct: 250 SKAIGKNGINIRLASMLSGYEIELNELSSSQLNNAISNEEAMKNLQDLFKI 300 >gi|208435381|ref|YP_002267047.1| transcription termination factor [Helicobacter pylori G27] gi|208433310|gb|ACI28181.1| transcription termination factor [Helicobacter pylori G27] Length = 395 Score = 189 bits (481), Expect = 8e-46, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|218661268|ref|ZP_03517198.1| transcription elongation factor NusA [Rhizobium etli IE4771] Length = 189 Score = 189 bits (481), Expect = 8e-46, Method: Composition-based stats. Identities = 140/189 (74%), Positives = 163/189 (86%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 MVKLF MEVPEIY+GI+QVK+V+RDPGSRAK+AV S+DSSIDPVGACVGMRGSRVQAVV Sbjct: 1 MVKLFTMEVPEIYDGIIQVKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVG 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQN 327 EL+ EKIDI+ WS D ATFV+NAL+PA V KVVLDED RIEV+VP EQLSLAIGRRGQN Sbjct: 61 ELQGEKIDIIPWSQDPATFVVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQN 120 Query: 328 VRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEEL 387 VRLASQLTGW IDI+TE E+S RQK+FNERT FM +++VDE++ +L +EGFA VEEL Sbjct: 121 VRLASQLTGWDIDIMTEAEESERRQKEFNERTNLFMDSLDVDEMVGQVLASEGFAAVEEL 180 Query: 388 ACVKISEIA 396 A V + EI+ Sbjct: 181 AYVDLDEIS 189 >gi|308062778|gb|ADO04666.1| transcription elongation factor NusA [Helicobacter pylori Cuz20] Length = 395 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDGDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|315585900|gb|ADU40281.1| transcription termination factor NusA [Helicobacter pylori 35A] Length = 395 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|308183617|ref|YP_003927744.1| transcription elongation factor NusA [Helicobacter pylori PeCan4] gi|308065802|gb|ADO07694.1| transcription elongation factor NusA [Helicobacter pylori PeCan4] Length = 395 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 186/361 (51%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDSDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|207092969|ref|ZP_03240756.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_AG0C1] Length = 387 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 193/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|297380632|gb|ADI35519.1| transcription termination factor NusA [Helicobacter pylori v225d] Length = 395 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSIKENAENESEKETQ 382 >gi|308185285|ref|YP_003929418.1| transcription elongation factor NusA [Helicobacter pylori SJM180] gi|308061205|gb|ADO03101.1| transcription elongation factor NusA [Helicobacter pylori SJM180] Length = 395 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|193216986|ref|YP_002000228.1| transcription elongation factor NusA [Mycoplasma arthritidis 158L3-1] gi|193002309|gb|ACF07524.1| transcription elongation factor NusA [Mycoplasma arthritidis 158L3-1] Length = 524 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 108/462 (23%), Positives = 215/462 (46%), Gaps = 40/462 (8%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD-ISLFRLL 66 E+ + + ++ K+++ + V+ + D+++K S Y +++ + E + I + Sbjct: 14 EIFKAINDLSKLKNLNTNEVIELFKDAVKKVIMS-YDEDAELEFVFDEENNEFIVINHTK 72 Query: 67 EVVEEV---ENYTC-----QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVI 118 VV++ E+ ++ L +A++ + G V+S+ + F + Q Sbjct: 73 YVVQDPITAEDKDMLCRCIEVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQSF 132 Query: 119 IQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE---N 175 Q +RE E+ + K+G+I+ V + +L + +R+ N Sbjct: 133 NQSIRELEKKVIVGVYSLKIGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTAN 192 Query: 176 LRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS 235 L+PGD + YI +V + QVL+S + + KL + EVPEI NG++ + ++R PG Sbjct: 193 LQPGDSIDVYIDNVGDADKNVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPGE 252 Query: 236 RAKLAVFSSDS---SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 RAK+A+ +++ ++ VG+ +G GSR+ V+ +L+ E++D++ +S D TF+ NA+ Sbjct: 253 RAKIAISANEKTPIGVEVVGSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAIS 312 Query: 293 PAIVTKVVLDEDVGRIE-----VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 PA V +V +++ + V+VP + +LAIG+RGQNV LAS L +DI ++++ Sbjct: 313 PAKVIDIVENKEKWQANYPAYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQDQA 372 Query: 348 SINRQKDFNERTQFFMQAINV-----------------DEIIAHLLVAEGFADVEEL--A 388 + + + ++ D + F E A Sbjct: 373 DLAKIEYDINNGNITQAELDELAQGKRLQSQFRRRTRQDTASRDTIDMADFEKEMEEIKA 432 Query: 389 CVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRE 430 + E + F+++ + E A E + +L+K+I E Sbjct: 433 RMTSYESFERQLFNQDVSNEDISLAFEKAQAELASLEKEIDE 474 >gi|308064276|gb|ADO06163.1| transcription elongation factor NusA [Helicobacter pylori Sat464] Length = 395 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 191/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIGELNAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|317010112|gb|ADU80692.1| transcription elongation factor NusA [Helicobacter pylori India7] Length = 395 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V++ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPLEELNAEEKESVQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|332674287|gb|AEE71104.1| transcription termination factor NusA [Helicobacter pylori 83] Length = 395 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|210135681|ref|YP_002302120.1| transcription elongation factor NusA [Helicobacter pylori P12] gi|210133649|gb|ACJ08640.1| transcription termination factor A [Helicobacter pylori P12] Length = 395 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 184/361 (50%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVE-YGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDSNQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ L PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLVLAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 V++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFVVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|297519524|ref|ZP_06937910.1| transcription elongation factor NusA [Escherichia coli OP50] Length = 178 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 ER +F++ GEII+G VK+V N+ +DLGN+ + VI R++ + REN RPGDR Sbjct: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 >gi|317181199|dbj|BAJ58985.1| transcription elongation factor NusA [Helicobacter pylori F32] Length = 395 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|269115299|ref|YP_003303062.1| transcription elongation protein NusA [Mycoplasma hominis] gi|268322924|emb|CAX37659.1| Transcription elongation protein NusA [Mycoplasma hominis ATCC 23114] Length = 546 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 113/509 (22%), Positives = 221/509 (43%), Gaps = 39/509 (7%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+ + ++ K ID+ V+ +++ K Y +D+ + E + ++ + Sbjct: 24 EIYKQIYNLSQIKKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHNK 83 Query: 68 VVEEVENYTC-----------QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 VV V + +I L A+ DP+++IG +S + F + Sbjct: 84 VV--VGDPITSEEKDRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKILA 141 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRE-- 174 Q ++ ER ++ +VG + V G V ++L + +++ Sbjct: 142 NFSQDIKNLERKMTCEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQRII 201 Query: 175 -NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDP 233 L PGD + I +V+ E Q+++S + + KLF +E+PEI G++ + ++R P Sbjct: 202 SKLNPGDWIDVVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARIP 261 Query: 234 GSRAKLAVFSSD---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINA 290 G RAK+++ S+ +++ +GA +G R+ + +L EKID+V++S D ++ NA Sbjct: 262 GERAKVSIKKSNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKNA 321 Query: 291 LRPAIVTKVVLDEDVG---RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 L PA V ++ VIVP Q +LAIG++GQNV LAS+L +DI+++E+ Sbjct: 322 LSPAKVIDLIEVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILSQEQA 381 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI-------SEIASIEG 400 + E + I + E L F + + +I+ Sbjct: 382 DERGIEYNFENGNITKEEIELLESGKKL--HHSFKHPKTIGNKNATNKFNTFENSFNIDE 439 Query: 401 FDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGI---- 456 FDE+ A E++ +A++ + + + + L + D + V EN + Sbjct: 440 FDEDLA-EMRRKAQQNDNIFERQMFSNSLDEDLERTLSELND-DKENNVD--ENDLDPYS 495 Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 K+ ++L D+ + + ++ F Sbjct: 496 KSFDELNEQKNDEEEDYEKITATKMKDFK 524 >gi|217034292|ref|ZP_03439709.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10] gi|216943264|gb|EEC22729.1| hypothetical protein HP9810_885g23 [Helicobacter pylori 98-10] Length = 395 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 99/381 (25%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ ++ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKMIQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCTRIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|213022790|ref|ZP_03337237.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 177 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 91/172 (52%), Positives = 129/172 (75%) Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 RPGDR++ +Y VR E RG Q+ ++R+ P+ +++LF +EVPEI ++++KA +RDPG Sbjct: 5 TYRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 64 Query: 235 SRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 SRAK+AV ++D IDPVGACVGMRG+RVQAV TEL E+IDIV+W + A FVINA+ PA Sbjct: 65 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPA 124 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V +V+DED +++ V L+ AIGR GQNV LASQL+GW ++++T ++ Sbjct: 125 DVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDD 176 >gi|317182719|dbj|BAJ60503.1| transcription elongation factor NusA [Helicobacter pylori F57] Length = 395 Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 192/381 (50%), Gaps = 31/381 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYE+++ ++++ V+ + K ++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYERNLPKEMISKVIQGCLLKMVQNELDPLARYLVV--EENKQLQLIQLVEV 61 Query: 69 VEE-----VENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + + A+ + + ++ Sbjct: 62 LEDNDERLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLENMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEYG-NVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNHQNTFIEIEQQFQGVLSMRHRIKGESFKVGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ +R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS ++ IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSHNARIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LTG+ I Sbjct: 302 KKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHI 361 Query: 340 DIITEEEDSINRQKDFNERTQ 360 + T N + + + TQ Sbjct: 362 EFETIPSVKENAENESEKETQ 382 >gi|109946702|ref|YP_663930.1| transcription elongation factor NusA [Helicobacter acinonychis str. Sheeba] gi|109713923|emb|CAJ98931.1| N utilization substance protein A [Helicobacter acinonychis str. Sheeba] Length = 395 Score = 186 bits (472), Expect = 9e-45, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 184/361 (50%), Gaps = 31/361 (8%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + + + +AYEK++ ++++ V+ + K A++ ++ V E + L +L+EV Sbjct: 4 ISDLIECIAYEKNLPKEMISKVVQGCLLKMAQNELDPLARYLVI--EENKQLQLIQLVEV 61 Query: 69 VEEVE-----NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVR 123 +E+ + + + ISL A++ DPS+ I +S L + A+ + + ++ Sbjct: 62 LEDDDEGLINDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQLE 121 Query: 124 EAERDRQYLEFKDKVGEIISGTVKRVEY-GNVIVDLGNS-DGVIRRDETISRENLRPGDR 181 +A D + F+ ++ ++ G V V+ N +++ GV+ I E+ + GD Sbjct: 122 KALEDSHFEAFQKRLNSVLMGQVILVDNNQNTFIEIEQQFQGVLSMRHRIKGESFKIGDS 181 Query: 182 VKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV 241 +K+ + V+R ++G + LSRT P+ + L +EVPEI + +++ R PG+RAK++ Sbjct: 182 IKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCVRIPGNRAKVSF 241 Query: 242 FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTK--- 298 FS++S IDP+GA VG++G R+ A+ EL E ID + +S ++ AL PA + Sbjct: 242 FSNNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSVEI 301 Query: 299 -------------------VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 +++ + + +V + + S AIG+ G NV LAS LT + I Sbjct: 302 KKIPIEELSAQEKELIQERFIVNNHLQKAKVRLLDTEKSKAIGKGGVNVCLASMLTSYHI 361 Query: 340 D 340 + Sbjct: 362 E 362 >gi|47458985|ref|YP_015847.1| transcription elongation factor NusA [Mycoplasma mobile 163K] gi|47458313|gb|AAT27636.1| N-utilization substance protein a [Mycoplasma mobile 163K] Length = 514 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 173/350 (49%), Gaps = 20/350 (5%) Query: 21 SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINP-ETGD--ISLFRLLEVVEEVENYTC 77 + + V+ + ++I + + + + + I ETG+ I L+ L ++V + + Sbjct: 26 DLSQKEVMDTLLNAITLIFNNDFDPNAKLDLVIEKSETGESKIKLYILNKLVTDYDVEEE 85 Query: 78 Q----ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLE 133 + ++++ A+ +PS+++ D +P F + V Q ++E ++ + Sbjct: 86 EKYYSMNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFTQSMKEFSKEYLISK 145 Query: 134 FKDKVGEIIS----GTVKRVEYGNVIVDL----GNSDGVIRRDETISRENLRPGDRVKSY 185 + + G+II G V + L G+ + + + GD V+ Y Sbjct: 146 YGNLKGQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQNPNIEMVIGDYVEVY 205 Query: 186 IYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSD 245 + DV+ + RG +V++S T + + KL +E+PEI +G + + A+ R PG R+K+AV + Sbjct: 206 VEDVKPDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKRIPGIRSKIAVSKTS 265 Query: 246 ---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVV 300 IDP+GA VG +GSR+ + L EKID++++ + F+IN++ PA V + Sbjct: 266 FAPDGIDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFIINSISPASVAHISKI 325 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 DE V+VP + AIG+ GQNV+LA+ LT +DI++ + Sbjct: 326 NDEANNHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILSVTQAKEK 375 >gi|218459797|ref|ZP_03499888.1| transcription elongation factor NusA [Rhizobium etli Kim 5] Length = 262 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 111/218 (50%), Positives = 151/218 (69%), Gaps = 1/218 (0%) Query: 304 DVGRIEVIVPKEQLSLAIG-RRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFF 362 D RIEV V + + QNVRLASQLTGW IDI+TE E+S RQK+FNERT F Sbjct: 33 DARRIEVFVSRTRQRRLRSVAAAQNVRLASQLTGWDIDIMTEAEESERRQKEFNERTNLF 92 Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M +++VDE++ +L +EGFA VEELA V + EI+SI+GFDE+TA EIQ RARE+LE ++ Sbjct: 93 MDSLDVDEMVGQVLASEGFAAVEELAYVDLDEISSIDGFDEDTAQEIQTRAREFLERLEA 152 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + +K + LGV +EL I G+ +++ VALGE+GIK++ED AGC+ DDL+GW+E K G + Sbjct: 153 EMDEKRKALGVQDELREIDGMTAQMMVALGEDGIKSIEDFAGCAADDLVGWTERKNGETK 212 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADE 520 KF+G S + + E MI+ AR GWI +E +A Sbjct: 213 KFEGLFSKFDVSRVEAEQMIVQARLAAGWITEEDLAKG 250 >gi|325973212|ref|YP_004250276.1| transcription termination factor NusA [Mycoplasma suis str. Illinois] gi|325989656|ref|YP_004249355.1| antitermination factor NusA [Mycoplasma suis KI3806] gi|323574741|emb|CBZ40397.1| antitermination factor NusA [Mycoplasma suis] gi|323651814|gb|ADX97896.1| transcription termination factor NusA [Mycoplasma suis str. Illinois] Length = 421 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 183/387 (47%), Gaps = 32/387 (8%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR 64 N + L+ ++ E S+++ + + +S + Y + S +++EI+ E I L++ Sbjct: 4 NHKQFLEAITKISKEYSLEKSTISDFLKESFKYVFEREY-SDSLVKLEIDLENCKIELWK 62 Query: 65 LLEVVEEV-------ENYTCQISLKVA-RDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQ 116 L+VV E E+ C I + + + +G S+P+ D V++ Sbjct: 63 ELKVVTEEYFYGEGMEDSECLIPVSKLPQRYQKKLKVGQYYSEPVNLEDLSTKIVKNILF 122 Query: 117 VIIQKVREAERDRQYLEFKDKVGEIISGTVKR------VEYGNVIVDL-------GNSDG 163 + E + + ++ + GE+ G V++ +IV L + G Sbjct: 123 HFQKLTLETVNQKIHEKWISRKGEVFEGMVEKIFETKEKLPKEIIVSLIDPENEAHTTKG 182 Query: 164 VIRRDETIS---------RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHM 214 ++ R + I ENL PG I +V G ++LSRT P + L Sbjct: 183 IVYRSDLIQALSNDGYRLYENLVPGKIYNFEIKEVLENSAGCPIILSRTSPAIVKYLMKK 242 Query: 215 EVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKI 274 + E+++G+V + A++R G R+K+ V + +++IDPVG C+G +G+R++ + ++L +E+I Sbjct: 243 HISEVHDGLVTINAIARISGMRSKVLVSTKNNNIDPVGCCIGPKGNRLKVISSQLLNERI 302 Query: 275 DIVVWSPDSATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 D+++W+ D +INA + + +E+ I +I + L LAIG+RG NV+L S Sbjct: 303 DVILWNSDPIKNIINAFSGTRILGYKISEEEENSITLITTIDNLLLAIGKRGTNVKLVSL 362 Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQ 360 LTGW I + T +E R Sbjct: 363 LTGWKIFLKTIQEAKAERINYLPIDKD 389 >gi|144575229|gb|AAZ44092.2| N-utilization substance protein A [Mycoplasma synoviae 53] Length = 560 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 94/436 (21%), Positives = 187/436 (42%), Gaps = 26/436 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-RLLEV 68 + ++ + K I D +++ + I +++ ++ E +I L + EV Sbjct: 20 FLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILLLNKNTEV 79 Query: 69 VEEVE----NYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VE+ E + IS L A++ + + +G ++S P+ F + + + + Sbjct: 80 VEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAA 139 Query: 122 VREAERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 + E ++R + ++ +G +++ + E G + L + + ++ I L PG Sbjct: 140 IAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPG 199 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + ++ V + +G + ++ T P+ + + E+PEI NG + ++ + R PG R+K+ Sbjct: 200 QKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKV 259 Query: 240 AV-----FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 V S + D +GA G + R+ V L +EKID++ ++ + F+ NA+ P Sbjct: 260 VVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPC 319 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V V + + VIV E +SLAIG G NV LAS++T ID+++ E+ + Sbjct: 320 PV--VDVVKSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQAFQEKIYF 377 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + ++ E + + IE F ++ A I Sbjct: 378 QDNYVPVHYTPRERNKNNFKKQARERASFGFDF---------GIEEFSKDVANFISKVEL 428 Query: 415 EYLEGIDITLQKKIRE 430 E L D + K E Sbjct: 429 EDLLKEDKAQETKQTE 444 >gi|71894695|ref|YP_278803.1| transcription elongation factor NusA [Mycoplasma synoviae 53] Length = 561 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 94/436 (21%), Positives = 187/436 (42%), Gaps = 26/436 (5%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLF-RLLEV 68 + ++ + K I D +++ + I +++ ++ E +I L + EV Sbjct: 21 FLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILLLNKNTEV 80 Query: 69 VEEVE----NYTCQIS---LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 VE+ E + IS L A++ + + +G ++S P+ F + + + + Sbjct: 81 VEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAA 140 Query: 122 VREAERDRQYLEFKDKVG-EIISGTVKRVEYGNVIVDLG-NSDGVIRRDETISRENLRPG 179 + E ++R + ++ +G +++ + E G + L + + ++ I L PG Sbjct: 141 IAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPG 200 Query: 180 DRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKL 239 + ++ V + +G + ++ T P+ + + E+PEI NG + ++ + R PG R+K+ Sbjct: 201 QKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKV 260 Query: 240 AV-----FSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPA 294 V S + D +GA G + R+ V L +EKID++ ++ + F+ NA+ P Sbjct: 261 VVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPC 320 Query: 295 IVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKD 354 V V + + VIV E +SLAIG G NV LAS++T ID+++ E+ + Sbjct: 321 PV--VDVVKSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQAFQEKIYF 378 Query: 355 FNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAR 414 + ++ E + + IE F ++ A I Sbjct: 379 QDNYVPVHYTPRERNKNNFKKQARERASFGFDF---------GIEEFSKDVANFISKVEL 429 Query: 415 EYLEGIDITLQKKIRE 430 E L D + K E Sbjct: 430 EDLLKEDKAQETKQTE 445 >gi|255030994|ref|ZP_05302945.1| transcription elongation factor NusA [Listeria monocytogenes LO28] Length = 179 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 104/179 (58%) Query: 32 ADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSI 91 ++ A + + ++RV++N E G I + E VE+V + +IS++ A +P Sbjct: 1 EAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVY 60 Query: 92 DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEY 151 G VV + P DFGR+A Q+AKQV+ Q+VREAER Y EF D+ +I++G V+R + Sbjct: 61 QPGDVVELEVTPKDFGRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDS 120 Query: 152 GNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 + V+LG + ++ ++E + E DR+K Y+ V + +GPQ+ +SRTHP + + Sbjct: 121 RFIYVNLGKIEAILSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKR 179 >gi|219558857|ref|ZP_03537933.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] Length = 194 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 83/173 (47%), Positives = 115/173 (66%), Gaps = 1/173 (0%) Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 E+ G+R++ Y+ V R R P + LSRTHP + KLF +EVPEI +G V++ AV+R+ Sbjct: 1 GESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVARE 60 Query: 233 PGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALR 292 G R+K+AV S+ + ++ GAC+G G RV+ V++EL EKIDI+ + D A FV NAL Sbjct: 61 AGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALS 120 Query: 293 PAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 PA V V +D+ V+VP QLSLAIG+ GQN RLA++LTGW IDI + Sbjct: 121 PAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 173 >gi|294155314|ref|YP_003559698.1| transcription termination factor NusA [Mycoplasma crocodyli MP145] gi|291600250|gb|ADE19746.1| transcription termination factor NusA [Mycoplasma crocodyli MP145] Length = 566 Score = 173 bits (438), Expect = 8e-41, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 184/459 (40%), Gaps = 37/459 (8%) Query: 5 NRLELLQIADAVAYE--KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 N L QIAD +A E K+I+RD+ + + + ++ IN Sbjct: 30 NNLSTQQIADIIADETTKAINRDIDPEAIINFVV-------DEEREVVSIINTNA----- 77 Query: 63 FRLLEVVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSA 114 VVE+ + + + A+ S++I + + F + Sbjct: 78 ----TVVEDEFEFNGDQDVQKISFVPISKAKKVKKSVEIDDAIDWEIDFEIFNEKTKTAI 133 Query: 115 KQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLG---NSDGVIRRDETI 171 K IQ+++ E+ Y ++ +GE + + +LG + Sbjct: 134 KNGFIQQLKANEKAAIYNKYSKLIGEKLKAKILSKNKDGSY-NLGLEDGVTAFLPYANIN 192 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 + NL PG + Y+ +V E + QV +S PQ + L + EVPEI G++ V ++ R Sbjct: 193 QKLNLNPGLFIDVYVDNVSEENKLSQVQVSTDSPQAIYDLLNKEVPEIAQGLIDVVSIQR 252 Query: 232 DPGSRAKLAVFSSDS--SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 PG R+K+AV S+ S+DP+ + +G GSR+ + L EK+D++++S FV N Sbjct: 253 VPGMRSKIAVKKSNPADSLDPISSIIGYNGSRINEISNALGGEKVDVILYSDVKEEFVKN 312 Query: 290 ALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE- 346 AL PA + VV + D ++ + +A+GR NV LA +LTG I+++ E Sbjct: 313 ALLPAKIIDVVKNNGADNYYFAIVASDSDMYVAMGRGVVNVNLAKKLTGTRIELLKVSEA 372 Query: 347 DSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVE-ELACVKISEIASIEGFDE-E 404 + + + + + V+ F ++ ++ + IE E Sbjct: 373 IAKGIEFKKQQSFEKPLIGKFVNRSPKKSKSTNYFDGIDIDINDFANDVNSFIETQKTIE 432 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGI 443 I A++ +K + E + Sbjct: 433 ETKAIVKEAKKAAVKQQKEKNEKAKSENPRNEQTDFDSM 471 >gi|293363915|ref|ZP_06610651.1| putative transcription termination factor NusA [Mycoplasma alligatoris A21JP2] gi|292552405|gb|EFF41179.1| putative transcription termination factor NusA [Mycoplasma alligatoris A21JP2] Length = 564 Score = 170 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 88/465 (18%), Positives = 183/465 (39%), Gaps = 41/465 (8%) Query: 4 ANRLELLQIADAVAYE--KSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDIS 61 N L Q+AD +A E K+I+RD+ + I ++ + + Sbjct: 28 KNNLTAQQVADMIADETTKAINRDIDPEAI-----------------ITFTVDESSESVF 70 Query: 62 LFR-LLEVVEEVENYTCQ--------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 + VVE+ ++ + + A+ + + + ++ + Sbjct: 71 IKNTNAVVVEDDFEFSGETDVQHISFVPYSKAKKVNKEVHVDDIIEWEIDFEIVTEKCKT 130 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVI--VDLGNSDGVIRRDET 170 + + IQ+++ E+ + ++ +G I + + Sbjct: 131 AIRNGFIQQLKANEKAEIFKKYHQLIGTKIKAKILSRNKDGSYNLAFEDGVTAFLPFSNI 190 Query: 171 ISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVS 230 +R L+ G + YI V E + QV +S PQ + L EVPEI G+V++ + Sbjct: 191 NTRIELKHGVLIDVYIETVSEENKLSQVQVSTDSPQMVYDLLKNEVPEIAQGLVEIMNIQ 250 Query: 231 RDPGSRAKLAVF--SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVI 288 R PG R+K+AV S +S +DP+ + +G+ GSR+ + +L EKID++++S + ++ Sbjct: 251 RAPGIRSKIAVRKTSVESEVDPISSVIGVNGSRINEISRKLGGEKIDVILYSEEITEYIK 310 Query: 289 NALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT--E 344 NAL PA + VV ++ D ++ + + +A+G+ NV LA +++G I++I E Sbjct: 311 NALSPARIVDVVKNKAMDNYYYAIVNSETDMYVAMGKGVVNVNLAKKISGCRIELIKAAE 370 Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 + + + NV + + F ++ +++ +E Sbjct: 371 AVEKGLEFNKAKFYDKPLIGRGNVKTFVKKSRPSNYFDGIDINLSDFAKDVSMFMETQKE 430 Query: 405 T--AVEIQGRAREYLEGIDITLQKK---IRELGVSEELCSIPGID 444 E A + I +K + + + + Sbjct: 431 INEVKESIKEANKLAAKQAIRNKKSSTVVEQKSPDFDSMFDEEMS 475 >gi|321310946|ref|YP_004193275.1| transcription termination factor N-utilization substance protein A [Mycoplasma haemofelis str. Langford 1] gi|319802790|emb|CBY93436.1| transcription termination factor N-utilization substance protein A [Mycoplasma haemofelis str. Langford 1] Length = 432 Score = 169 bits (429), Expect = 9e-40, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 38/402 (9%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 LL + AV + + + V ++ D+ + Y + I V+++ + I ++R L V Sbjct: 11 LLSLVSAVGEKYDLSPETVARLLEDTFRSVFLKEY-PDNIIDVDVDLKKAKIEIWRHLRV 69 Query: 69 VEEV-------ENYTCQI------SLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAK 115 V + E+ I SL S +G V + F + Sbjct: 70 VTDDYYNGEGNEDDETLIPVSKLASLPNTSKNPSSPKVGDTVFQEVDIESFDDKIANNI- 128 Query: 116 QVIIQKVREAERDR-QYLEFKDKVGEIISGTVKRVEYGN-------VIVDLGN-----SD 162 Q +K+ E+E R ++ G+++ G ++ + +IV L + Sbjct: 129 QFYFKKLTESEVSRSICQKWTPFHGKVVEGVIEEIIENRDDRTIKKIIVSLEAPDKTIAK 188 Query: 163 GVIRRDETI---------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFH 213 GVI R + + ENL G+ Y+ ++ + LSRT + + Sbjct: 189 GVIFRSDLVWIDGPNGTRIYENLVLGNTYLFYVKEISEVNVHLPIFLSRTDSEITKHVMA 248 Query: 214 MEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK 273 + EI G V++KA++R G ++K+ V S+D +ID VG C+G +G R++ + EL +EK Sbjct: 249 KHISEISEGKVEIKAIARIAGFKSKVLVHSNDPNIDAVGCCIGPKGERLKVISRELLNEK 308 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 ID+++W+ D VIN+ + L ED I ++ + L IG+RG N +L Sbjct: 309 IDVILWNEDPVQNVINSFVTGKILGYRL-EDENEITLVATLDNLLSCIGKRGSNTKLVYM 367 Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375 LTGW I++ T +E F + + + I + Sbjct: 368 LTGWKINLKTIQEAKDEGIDYVAIDDDKFTNSNKISDRIFKM 409 >gi|213022854|ref|ZP_03337301.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 165 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 96/153 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 ER +F+D+ GEI++G VK+V N+ +++ Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEI 154 >gi|297250843|ref|ZP_06865170.2| transcription termination/antitermination protein NusA [Neisseria polysaccharea ATCC 43768] gi|296837867|gb|EFH21805.1| transcription termination/antitermination protein NusA [Neisseria polysaccharea ATCC 43768] Length = 208 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 139/228 (60%), Gaps = 21/228 (9%) Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 +AL PA V+++V+DED ++VIV ++QL+LAIGR GQNVRLAS+LTGW ++I+T E Sbjct: 2 SALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVRLASELTGWQLNIMTSAEAD 61 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 + + FM +NVDE A +LV EGFA +EE+A V +E+ +IEGFDEE Sbjct: 62 ERNAAEDAAIRRLFMDHLNVDEETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDM 121 Query: 409 IQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 ++ RAR+ + + I ++K+ E VS+++ ++ G+D+ + +L E GI T +DLA +VD Sbjct: 122 LRNRARDAILTMAIAAEEKLGE--VSDDMRNLEGVDADMLRSLAEAGITTRDDLAELAVD 179 Query: 469 DLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEK 516 +L+ + G ++ +++I+ AR W ++K Sbjct: 180 ELIEIT-----------------GVNEETAKAVILTAREH--WFTEDK 208 >gi|213421302|ref|ZP_03354368.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 163 bits (412), Expect = 8e-38, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 93/149 (62%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 +VEEV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 ER +F+D+ GEI++G VK+V N+ Sbjct: 122 ERAMVVDQFRDQEGEIVTGVVKKVNRDNI 150 >gi|330723850|gb|AEC46220.1| transcription elongation factor NusA [Mycoplasma hyorhinis MCLD] Length = 538 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 102/476 (21%), Positives = 188/476 (39%), Gaps = 51/476 (10%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISL 62 N E+LQ ++ + ID + + ++ DSI + S + ++I + I+ + I + Sbjct: 18 NFQEILQ---DISEFRKIDLNNIKDILQDSISRQIVSKLDSEAEIELVIDEQNPQEFIVI 74 Query: 63 FRLLEVVEEVE-------------------------NYTCQISLKVARDRDPSIDIGGVV 97 + VV + E I L A++ +P+ + Sbjct: 75 NKNGTVVTDQEFSDMLTVAPEFTHTDMSDKQTSFQSEKITFIPLSTAKEINPNAKVDDTF 134 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 P+ +F + Q QK+ E R Y ++ II T+ + Sbjct: 135 DIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLKNSIIKATLIKKSQNGFNYL 194 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 L IS N+ + +I DV Q+ Q++LS + + E+P Sbjct: 195 LEGEIPAYMPKPNISNFNIALNTEEEVFIEDVLDNQKDSQIILSSKEGMILKEKLKREIP 254 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVGACVGMRGSRVQAVVTELRDE 272 E+ GI+++ V+R+ G R+K++V + +D VG+ +G GSR+ + E+ E Sbjct: 255 EVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVGSLIGKNGSRIATINKEILGE 314 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRL 330 KIDIV + P+ ++INAL PA V + + + V+VP + AIG+ NVRL Sbjct: 315 KIDIVRYDPNITKYIINALSPARVVYIEEVKKSKGQKFLVVVPTSHQAKAIGKNAINVRL 374 Query: 331 ASQLTGWTIDIITEEED------------SINRQKDFNERTQFFMQAINVDEIIAHLLVA 378 A++LT IDI + ++ ++ Q + + + E H Sbjct: 375 ANELTRTKIDIKSYKDYISEGKTITHWNANVENQHELEQIEKASSVPHKTTEHKNHRYTR 434 Query: 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVS 434 + F++ +A + IE E + E++E I ++ Sbjct: 435 KSFSNTNIMAEFEKDIEKYIEDLQNERL--LYEDEEEFVENISTKETALEKQAKPE 488 >gi|304373277|ref|YP_003856486.1| Transcription termination-antitermination factor nusA [Mycoplasma hyorhinis HUB-1] gi|304309468|gb|ADM21948.1| Transcription termination-antitermination factor nusA [Mycoplasma hyorhinis HUB-1] Length = 557 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 96/446 (21%), Positives = 179/446 (40%), Gaps = 41/446 (9%) Query: 5 NRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGD--ISL 62 N E+LQ ++ + ID + + ++ DSI + S + ++I + I+ + I + Sbjct: 18 NFQEILQ---DISEFRKIDLNNIKDILQDSISRQIVSKLDSEAEIELVIDEQNPQEFIVI 74 Query: 63 FRLLEVVEEVE-------------------------NYTCQISLKVARDRDPSIDIGGVV 97 + VV + E I L A++ +P+ + Sbjct: 75 NKNGTVVTDQEFSDMLTVAPEFTHTDMSDKQTSFQSEKITFIPLSTAKEINPNAKVDDTF 134 Query: 98 SDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD 157 P+ +F + Q QK+ E R Y ++ II T+ + Sbjct: 135 DIPIDISEFDKHIFVPIIQTFKQKIHEFTRKLIYQKYFPLKNSIIKATLIKKSQNGFNYL 194 Query: 158 LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVP 217 L IS N+ + + +I DV Q+ Q++LS + + E+P Sbjct: 195 LEGEIPAYMPKPNISNFNIALNTKEEVFIEDVLDNQKDSQIILSSKEGMILKEKLKREIP 254 Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFS-----SDSSIDPVGACVGMRGSRVQAVVTELRDE 272 E+ GI+++ V+R+ G R+K++V + +D VG+ +G GSR+ + E+ E Sbjct: 255 EVEAGILEIVNVAREAGLRSKVSVKKVHEDENSQGVDEVGSLIGKNGSRIATINKEILGE 314 Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRL 330 KIDIV + P+ ++INAL PA V + + + V+VP + AIG+ NVRL Sbjct: 315 KIDIVRYDPNITKYIINALSPARVVYIEEVKKSKGQKFLVVVPTSHQAKAIGKNAINVRL 374 Query: 331 ASQLTGWTIDI--ITEEEDSINRQKDFNERTQFFMQAINVDEIIAH--LLVAEGFADVEE 386 A++LT IDI + +N + + +++ + Sbjct: 375 ANELTRTKIDIKSYKDYISEGKTITHWNANVENQHELEQIEKASSVPYKTTEHKNHRYTR 434 Query: 387 LACVKISEIASIEGFDEETAVEIQGR 412 + + +A E E+ ++Q Sbjct: 435 KSFSNTNIMAEFEKDIEKYIEDLQNE 460 >gi|319776808|ref|YP_004136459.1| n-utilization substance protein a [Mycoplasma fermentans M64] gi|318037883|gb|ADV34082.1| N-utilization substance protein A [Mycoplasma fermentans M64] Length = 538 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 95/461 (20%), Positives = 188/461 (40%), Gaps = 40/461 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK + + V+ + ++ + + ++I E++ E ++ +F V + Sbjct: 23 LIGYFEKEK-LPIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 72 VE----NYTCQISL---KVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 E + QIS K A+ R P + + + + +++ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ + Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 Query: 351 ----------------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 +++ R Q ++ A+ + A+ F ++ + Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNF--DQD 439 Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 IA+ E +++ +Q + E + + E V Sbjct: 440 IAAFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVEN 480 >gi|240047659|ref|YP_002961047.1| transcription elongation factor NusA [Mycoplasma conjunctivae HRC/581] gi|239985231|emb|CAT05244.1| N-utilization substance protein A [Mycoplasma conjunctivae] Length = 623 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 82/351 (23%), Positives = 156/351 (44%), Gaps = 24/351 (6%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL-E 67 +L+ +A + D+VL + SI+K +++ +E + + ++ + E Sbjct: 20 ILESLKEIAQQNQTTIDIVLETFSKSIEKVINKKIDPEAELELETDFDKFIFKVYNINGE 79 Query: 68 VVEE-----------VENYTCQISLKVARDRD----PSIDIGGVVSDPLPPMDFGRVAVQ 112 +VE+ E IS+ A + + +G V + F + Q Sbjct: 80 IVEDTYFDNLDDLAKHEASFSFISISDAIAKKIAKPEDLQVGNRVKIEIDITTFDKSIFQ 139 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDL-GNSDGVIRRDETI 171 SA Q Q E R R Y ++ +I + + I +L + Sbjct: 140 SAIQNFKQTNSEINRQRIYDKYLPLKNTVILAKITNKIHSGYIFELVEDKVAAFMPSHYS 199 Query: 172 SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 + L+ GD ++ I DV + + Q+++S Q + +PE+ +++ +++R Sbjct: 200 IGQKLKVGDILEVVIEDVNKSSKQSQIIVSSKSIQLVKNKIINAIPELQTNNLEIVSIAR 259 Query: 232 DPGSRAKLAVFSSD-SSIDPV---GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFV 287 PG + K+AV ++ D + GA +G +G R++++ +L E+I+IV + + TFV Sbjct: 260 IPGEKCKVAVKKTNLPGSDHISELGAIIGEKGVRIESISQDLDGEQIEIVKYDENILTFV 319 Query: 288 INALRPAIVTK---VVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 NA+ PA V ++ V+VP Q +LAIG++G NV+LA+ LT Sbjct: 320 ANAIAPARVVCVKEFKINNKNKHYTVVVPDFQHTLAIGKKGSNVQLATDLT 370 >gi|308189651|ref|YP_003922582.1| N utilization substance protein A [Mycoplasma fermentans JER] gi|307624393|gb|ADN68698.1| N utilization substance protein A [Mycoplasma fermentans JER] Length = 538 Score = 156 bits (395), Expect = 8e-36, Method: Composition-based stats. Identities = 94/461 (20%), Positives = 187/461 (40%), Gaps = 40/461 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK + + V+ + ++ + + ++I E++ E ++ +F V + Sbjct: 23 LIGYFEKEK-LPIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 72 VE----NYTCQISL---KVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 E + QIS K A+ R + + + + +++ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMSKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ + Sbjct: 322 SPIPAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 Query: 351 ----------------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 +++ R Q ++ A+ + A+ F ++ + Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNF--DQD 439 Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 IA+ E +++ +Q + E + + E V Sbjct: 440 IAAFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVEN 480 >gi|238809615|dbj|BAH69405.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 538 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 95/461 (20%), Positives = 188/461 (40%), Gaps = 40/461 (8%) Query: 12 IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE 71 + EK + + V+ + ++ + + ++I E++ E ++ +F V + Sbjct: 23 LIGYFEKEK-LHIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 72 VE----NYTCQISL---KVARDRDPSIDIGGVVSDPLPPMDFGR-------VAVQSAKQV 117 E + QIS K A+ R P + + + + +++ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I Q ++ ++ + ++ K+G+ + + NV + N + + ++ Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 PG I V E + Q+ +S P+ + + +PEI G+++V V R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 235 SRAKLAVF---SSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINAL 291 R K+AV ++ ID G+ +G GSR+ + +L EKID++++ D +V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 292 RPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSIN 350 P V+L DE + VIV E L+ AIG+RG N LAS LT +DII+ + Sbjct: 322 SPIQAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 Query: 351 ----------------RQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISE 394 +++ R Q ++ A+ + A+ F ++ + Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNF--DQD 439 Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 IA+ E +++ +Q + E + + E V Sbjct: 440 IAAFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVEN 480 >gi|15828674|ref|NP_326034.1| transcription elongation factor NusA [Mycoplasma pulmonis UAB CTIP] gi|14089616|emb|CAC13376.1| N-UTILIZATION SUBSTANCE PROTEIN A [Mycoplasma pulmonis] Length = 550 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 69/363 (19%), Positives = 157/363 (43%), Gaps = 24/363 (6%) Query: 3 SANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISL 62 S ++ + ++ +K + V + ++ + ++ + +D+ + + E +++ Sbjct: 24 SNKTIDFFLSLENLSRDKKLKISTVKQIFQEAFFQVIKNDFDPDADLEIVYDDEKKEVTF 83 Query: 63 FRLLEVV------EEVENYTCQ------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVA 110 + +V E ++Y+ + + L AR + IG +V + + Sbjct: 84 YNNNAIVIEDALEEADDDYSAEEMLVSFVRLSDARKEKSDVQIGDIVKKQIKHDELKLNE 143 Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV---IVDLGNSDGVIRR 167 V+ + Q + + + + K+G+ I ++ + +V + + Sbjct: 144 VKKIFSIFQQNLAKEAKQSVLDFYSSKIGQKIQVKIEEFKNRGFFGSVVGDMETKVFLPN 203 Query: 168 DETISRENLRPGDRVKSYIYDVRREQRGPQ---VLLSRTHPQFMVKLFHMEVPEIYNGIV 224 E + G ++ Y + +E + +++S P ++ + EI NG + Sbjct: 204 KEINKNSKIALGKKIDVYFIEFAKEFQNKSETLLIVSLNSPLEVINVLKETFEEIANGSI 263 Query: 225 QVKAVSRDPGSRAKLAVFSSD---SSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 +K ++R G R K+AV S ++ +G +G G R + + +L +EKID V++ Sbjct: 264 IIKKIARKAGIRTKIAVEKSHLASEGLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIYKE 323 Query: 282 DSATFVINALRPAIVTKV-VLDEDVG--RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 D F++ +L+PA V + + + V+VP Q+S+AIG+ G N L+S+L+ Sbjct: 324 DLQEFIVESLKPANVISIERVVPETHIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQSR 383 Query: 339 IDI 341 I+I Sbjct: 384 INI 386 >gi|254700793|ref|ZP_05162621.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] Length = 181 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 82/167 (49%), Positives = 114/167 (68%) Query: 357 ERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY 416 ER+ FM+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREY Sbjct: 2 ERSNLFMEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREY 61 Query: 417 LEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSEN 476 LE I+ + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E Sbjct: 62 LERIEAEQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRER 121 Query: 477 KGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 K G+ G L+ + E M++ AR K GWI +E++A Sbjct: 122 KDGDTINHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 168 >gi|261751302|ref|ZP_05995011.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] gi|261741055|gb|EEY28981.1| transcription elongation factor NusA [Brucella suis bv. 5 str. 513] Length = 174 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 79/161 (49%), Positives = 110/161 (68%) Query: 363 MQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDI 422 M+A+NVDE++ +L +EGFA VEELA V EI+SI+GFDE+TA EIQ RAREYLE I+ Sbjct: 1 MEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEA 60 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + +ELGV++EL +PG+ + + VA+GE+G+KTMED AG +VDDL+GW E K G+ Sbjct: 61 EQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTI 120 Query: 483 KFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 G L+ + E M++ AR K GWI +E++A Sbjct: 121 NHSGVLTPFDLSRVDAEQMVLAARLKAGWITEEELAAASED 161 >gi|300508327|pdb|2KWP|A Chain A, Solution Structure Of The Aminoterminal Domain Of E. Coli Nusa Length = 129 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 47/124 (37%), Positives = 76/124 (61%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RV+I+ ++GD FR Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 VV+EV T +I+L+ AR D S+++G V D + + F R+ Q+AKQVI+QKVREA Sbjct: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 Query: 126 ERDR 129 ER Sbjct: 122 ERAM 125 >gi|313678838|ref|YP_004056578.1| transcription termination factor nusA [Mycoplasma bovis PG45] gi|312950148|gb|ADR24743.1| putative transcription termination factor nusA [Mycoplasma bovis PG45] Length = 544 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 166/385 (43%), Gaps = 37/385 (9%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYT 76 EK ID ++ S+ ++ + + + ++I EI+ + ++ ++ +V VE+ Sbjct: 25 EKEK-IDLSILASIFSEEVTRIVQKNIDPEANIVFEIDEDNKEVHVYNTEAIV--VEDSE 81 Query: 77 CQ--------------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV-------QSAK 115 + + L A+ I ++ + + + + + + Sbjct: 82 FESVSDAEKVSLMLYNVPLSDAKKVKSDAQIDDLIKIEVDLLALSKSSNPVVQKTPKIIE 141 Query: 116 QVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETIS 172 I+Q +++ ++ Y ++ +K+GE + NV + + + + Sbjct: 142 SSILQAIKKLQKSIVYTKYLEKIGETVKVMFISKNTKGSWNVQIVDDGVMAHLPANYVSA 201 Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRD 232 + + PG I V +E + Q+ +S P+ + K+ + +PEI +G++++ V R Sbjct: 202 KRVINPGSYGDVVIERVEKETKLSQITVSLDSPKLIEKILYNNIPEINSGLIEIVNVQRI 261 Query: 233 PGSRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDS 283 PG R K ++ + +D GA +G SR+ +++EL EK D++V + D Sbjct: 262 PGERTKAVFRATPGNEHLDVYGAIIGHDSSRINLIISELNFGVNQADMEKFDVIVHTNDK 321 Query: 284 ATFVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 F+ + P V +V +E VI K LS AIG++G N LAS+++ +DII Sbjct: 322 KEFIRRCMLPGQVLDIVPKNESQNTFYVITIKAALSAAIGKKGANTMLASKVSHCNLDII 381 Query: 343 TEEEDSINRQKDFNERTQFFMQAIN 367 T EE + R +++N Sbjct: 382 TVEEAMQKNISFDDSRIAEVEESLN 406 >gi|153812998|ref|ZP_01965666.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174] gi|149830945|gb|EDM86035.1| hypothetical protein RUMOBE_03405 [Ruminococcus obeum ATCC 29174] Length = 162 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 86/143 (60%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 EL++ D + EK+I +D +L + S+ +A ++ +G ++ V INPET D S++ Sbjct: 2 NKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYAE 61 Query: 66 LEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREA 125 EV E V++ +ISL A+ + + ++G ++ + +FGR+A Q+AK VI+QK+RE Sbjct: 62 REVKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIREE 121 Query: 126 ERDRQYLEFKDKVGEIISGTVKR 148 ER Y ++ E+++G V+R Sbjct: 122 ERKVLYDQYYGMEKEVVTGIVQR 144 >gi|254671946|emb|CBA04328.1| N utilization substance protein A [Neisseria meningitidis alpha275] Length = 186 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 121/207 (58%), Gaps = 21/207 (10%) Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVD 369 +IV + QL+LAIGR GQNVRLAS LTGW ++I+T E + + FM +NVD Sbjct: 1 MIVDENQLALAIGRGGQNVRLASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDHLNVD 60 Query: 370 EIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR 429 E A +LV EGFA +EE+A V +E+ +IEGFDEE ++ RAR+ + + I ++K+ Sbjct: 61 EETADVLVQEGFATLEEVAYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLG 120 Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 E VS+++ ++ GID+ + +L E GI T +DLA +VD+L+ + Sbjct: 121 E--VSDDMRNLEGIDADMLRSLAEAGITTRDDLAELAVDELIEIT--------------- 163 Query: 490 SLGTPKDQVESMIIHARYKMGWIEKEK 516 G ++ +++I+ AR W ++K Sbjct: 164 --GVNEETAKAVILTAREH--WFTEDK 186 >gi|13937007|gb|AAK50007.1|AF363237_1 transcription termination-antitermination factor [Homo sapiens] Length = 172 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 100/160 (62%), Gaps = 1/160 (0%) Query: 146 VKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHP 205 + + ++VD N++ ++ + E I + R G+ +++ I V E P+++LSRT P Sbjct: 1 YQVWKREVLLVDDDNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSP 60 Query: 206 QFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAV 265 F+ +L EVPEI +G++ +K V+R PG RAK+AV S D IDPVGACVG+RGSRV + Sbjct: 61 TFLERLLEQEVPEIADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGI 120 Query: 266 VTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV 305 V EL +E ID+V W+ ++ + + L+ ++ + DE+ Sbjct: 121 VRELCNENIDVVHWTANT-KLLSSVLKSCPISSIAPDEET 159 >gi|261886077|ref|ZP_06010116.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 200 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 3/184 (1%) Query: 168 DETISRENLRPGDRVKSYIYDVRREQRG-PQVLLSRTHPQFMVKLFHMEVPEIYNGIVQV 226 I E + G+ VK+ I VR +++ +V LSRT P+F+ L EVPEI +G V + Sbjct: 2 KNRIKNEKFKVGNVVKAVIKSVRLDKKDGIKVELSRTSPKFLEALLKAEVPEIKDGGVII 61 Query: 227 KAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATF 286 + +R PG +AK+A+FS+ +ID VGA VG++G R+ AV +EL E ID + +S + A F Sbjct: 62 QNSARIPGKKAKIALFSTTPNIDAVGATVGIKGVRINAVSSELNGENIDAIEYSSEPAIF 121 Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346 V AL PAIV+ V +D+ + V + EQ S AIG G N+RLAS L+G+ I + Sbjct: 122 VARALAPAIVSSVKIDD--KKAIVSLVPEQKSKAIGVSGINIRLASMLSGFEIILHEIGA 179 Query: 347 DSIN 350 + Sbjct: 180 PTQE 183 >gi|148377961|ref|YP_001256837.1| transcription elongation factor NusA [Mycoplasma agalactiae PG2] gi|148292007|emb|CAL59399.1| Transcription elongation protein NusA [Mycoplasma agalactiae PG2] Length = 544 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 95/484 (19%), Positives = 198/484 (40%), Gaps = 63/484 (13%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR-LLEVVEEVE-N 74 EK ++ V+ + ++ + + + ++I EI+ E ++ ++ VV++ E + Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83 Query: 75 YTCQ----------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV-------QSAKQV 117 + + L VA+ ++ + + + + + + Sbjct: 84 DLSEADKVSLMLYNVPLSVAKKVKNDANVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I+Q +++ ++ Y ++ +K+GE + T + NV + + + ++ Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISMNSKGSWNVQIVDDGVIAHLPANYVSAKR 203 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 + PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V R PG Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263 Query: 235 SRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDSAT 285 R K +S + +D GA +G SR+ +++E+ EK D++V++ D Sbjct: 264 ERTKAVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYTSDKKE 323 Query: 286 FVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITE 344 F+ + P V +V +E VI K LS AIG++G N LAS+++ +DIIT Sbjct: 324 FIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITV 383 Query: 345 EEDSINRQKDFNERTQFFMQAINV-----------------------DEIIAHLLVAEGF 381 EE + +++N L EGF Sbjct: 384 EEAKQKNIPFDESKIAEVEESLNSFRRYGATKKAPTRAFNNNRRKTNSYFENLDLSLEGF 443 Query: 382 ADV------EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 +E A S ++E FDE +E +E + ++ +K+ E+ E Sbjct: 444 DKDILAFREQEQAFFDESNSQNME-FDELIQQYNSESVKENIESDERSIDEKLNEIQREE 502 Query: 436 ELCS 439 +L + Sbjct: 503 KLTA 506 >gi|291320687|ref|YP_003515952.1| transcription elongation protein NusA [Mycoplasma agalactiae] gi|290753023|emb|CBH40999.1| Transcription elongation protein NusA [Mycoplasma agalactiae] Length = 544 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 98/484 (20%), Positives = 205/484 (42%), Gaps = 63/484 (13%) Query: 17 AYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFR-LLEVVEEVE-N 74 EK ++ V+ + ++ + + + ++I EI+ E ++ ++ VV++ E + Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83 Query: 75 YTCQ----------ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV-------QSAKQV 117 + + L VA+ +++ + + + + + + Sbjct: 84 DLSESDKVSLMLYNVPLSVAKKVKSDVNVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143 Query: 118 IIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG---NVIVDLGNSDGVIRRDETISRE 174 I+Q +++ ++ Y ++ +K+GE + T NV + + + ++ Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISKNSKGSWNVQIVDDGVIAHLPANYVSAKR 203 Query: 175 NLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPG 234 + PG I V ++ + Q+ +S P+ + K+ + +PEI +G++++ V R PG Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263 Query: 235 SRAKLAVFSS--DSSIDPVGACVGMRGSRVQAVVTELRD-------EKIDIVVWSPDSAT 285 R K +S + +D GA +G SR+ +++E+ EK D++V++ D Sbjct: 264 ERTKAVFNASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADMEKFDVIVYTSDKKE 323 Query: 286 FVINALRPAIVTKVVL-DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT- 343 F+ + P V +V +E VI K LS AIG++G N LAS+++ +DIIT Sbjct: 324 FIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITV 383 Query: 344 ----------------EEEDSINRQKDFNERTQFFMQAINVDEIIAHL------LVAEGF 381 E E+S+N + + + +A N + + L EGF Sbjct: 384 EEAKLKNILFDESKIAEVEESLNSFRRYGATKKAPARAFNNNRRKTNSYFENLDLSLEGF 443 Query: 382 ADV------EELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 +E A S ++E FDE +E +E + ++ +K+ E+ E Sbjct: 444 DKDILAFREQEQAFFDESNSQNME-FDELIQQYNSESVKENVESDERSIDEKLNEIQKEE 502 Query: 436 ELCS 439 +L + Sbjct: 503 KLTA 506 >gi|254434624|ref|ZP_05048132.1| transcription termination factor NusA, C-terminal duplication domain protein [Nitrosococcus oceani AFC27] gi|207090957|gb|EDZ68228.1| transcription termination factor NusA, C-terminal duplication domain protein [Nitrosococcus oceani AFC27] Length = 199 Score = 143 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 19/218 (8%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V V + LS AIGR GQN+RLASQLTGW ++++TE+E + + Q FM+ ++ Sbjct: 1 MDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFMEQLD 60 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +LV EGF+ +EE+A V EI +IE FD + E++ RAR+ L I ++ Sbjct: 61 VDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIANEET 120 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGF 487 I + + +EL + ID + AL GI T E+LA +VD+L+ Sbjct: 121 IETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIE------------- 167 Query: 488 LSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDA 525 G +++ +I+ AR W EK +E + Sbjct: 168 ----GMNREKAARLIMAARES--WFVSEKQDEETEERQ 199 >gi|215428279|ref|ZP_03426198.1| transcription elongation factor NusA [Mycobacterium tuberculosis T92] gi|289571028|ref|ZP_06451255.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] gi|289544782|gb|EFD48430.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] Length = 159 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 70/138 (50%), Positives = 95/138 (68%), Gaps = 1/138 (0%) Query: 208 MVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 M KLF +EVPEI +G V++ AV+R+ G R+K+AV S+ + ++ GAC+G G RV+ V++ Sbjct: 1 MRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMS 60 Query: 268 ELRDEKIDIVVWSPDSATFVINALRPAIVTKVV-LDEDVGRIEVIVPKEQLSLAIGRRGQ 326 EL EKIDI+ + D A FV NAL PA V V +D+ V+VP QLSLAIG+ GQ Sbjct: 61 ELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQ 120 Query: 327 NVRLASQLTGWTIDIITE 344 N RLA++LTGW IDI + Sbjct: 121 NARLAARLTGWRIDIRGD 138 >gi|255077143|ref|XP_002502222.1| predicted protein [Micromonas sp. RCC299] gi|226517487|gb|ACO63480.1| predicted protein [Micromonas sp. RCC299] Length = 897 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 40/356 (11%) Query: 28 LSVMADSIQKAARS-LYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARD 86 L ++ +I +A R Y E++P R +V ++ +++ +A+ Sbjct: 329 LEAVSRAIDRAYRKLRYSA----FAEMDP--------RGRDVCVDINVAEGTVAV-LAQR 375 Query: 87 RDPSIDIGGVVSDPLPPMDF------GRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 GG V D R ++ + +++ E ++ K G+ Sbjct: 376 IGR----GGTVEWETDDTDAFLEAYGKRHMIRKIAHMYTEELNEQVSAVAADSYRAKRGQ 431 Query: 141 IISGTVKRVEYGNVIVD--LGNSDGVIRRDETISRENLRPGDRVKSYIYDVRRE----QR 194 ++ TV + + + +E+I + G+RV + + +V R Sbjct: 432 MVECTVVAEGRRGEYLLRLDDGAMACLPEEESIPGKKYSQGERVCALVMEVEDRTWAADR 491 Query: 195 GPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSS---IDPV 251 V++S + ++ EVPE+ G V +K+V+R G +K+AV + + DPV Sbjct: 492 RAPVIVSTAIAGLLAEVLAAEVPEVARGDVVIKSVARVSGKMSKVAVARQEGAEKVFDPV 551 Query: 252 GACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV------ 305 ACVG+ SR++A+ L E I+ WS + V AL PA V +VV E+ Sbjct: 552 LACVGVENSRLRAIRERLGGEVCQILTWSDNREDMVAEALFPAAVHRVVKAEEDDMDGRA 611 Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + V + + AIG G NV+LA+ LTG I I EE ++R Sbjct: 612 LDKFIAYVSRFDEAKAIGAGGVNVKLAAALTGCFILIERHEEGGGAGGGWGDQRAN 667 >gi|222871752|gb|EEF08883.1| predicted protein [Populus trichocarpa] Length = 274 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 113/164 (68%), Gaps = 2/164 (1%) Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAIN 367 ++V+V +E L+++IGR GQNVRLAS+LTGW I+I+T+EE + + ++ + FM ++ Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60 Query: 368 VDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKK 427 VDE +A +L+ EGF+ +EE+A V ISE+ IE FDE+T E++ RAR+ L +++ ++K Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120 Query: 428 IRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 + E VS++L S+ G+ ++ L E I T +DLA +VD+L Sbjct: 121 VEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELA 162 >gi|258615950|ref|ZP_05713720.1| transcription elongation factor NusA [Enterococcus faecium DO] Length = 171 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 101/185 (54%), Gaps = 19/185 (10%) Query: 225 QVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSA 284 ++ +++R+ G R+K+AV S+D +ID VG CVG +G RVQA+V EL+ E +DIV W+ D A Sbjct: 1 EIVSIAREAGDRSKVAVRSNDPNIDAVGTCVGPKGQRVQAIVNELKGENMDIVEWNEDPA 60 Query: 285 TFVINALRPAIVTKVVLDEDV-GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 F+ NAL PA V V+ DE V+VP QLSLAIG+RGQN RLA++LT IDI + Sbjct: 61 VFIANALNPAQVMDVIFDETNPKACTVVVPDYQLSLAIGKRGQNARLAAKLTNHKIDIKS 120 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 E + + E + Q +E+ +V + F+ Sbjct: 121 ESDMT--------EFYENQEQQKETEELHDEAIVQSDLT----------DDEYETIAFNN 162 Query: 404 ETAVE 408 ET E Sbjct: 163 ETVEE 167 >gi|328479976|gb|EGF49013.1| transcription elongation factor NusA [Lactobacillus rhamnosus MTCC 5462] Length = 117 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 70/114 (61%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E++Q DA+ EK + ++VV+ + ++ A + Y ++ VE +P+ GDI ++ + E Sbjct: 4 EMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHVYAVKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQK 121 V +EV + ++SLK A + + +IG + + P DFGR+A Q+AKQVI+Q+ Sbjct: 64 VTDEVFDSRLEVSLKDALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQR 117 >gi|409843|gb|AAD10598.1| Significant homology to E.coli protein NusA X00513 [Mycoplasma genitalium] Length = 217 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 10/217 (4%) Query: 52 EINPETGDISLFRLLEVV-EEVENYT--CQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108 IN + G I++ +L VV +E E+Y +I L+ A + S+ +G V+ P+P + Sbjct: 1 NINFDKGIINVEQLFNVVSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISS 60 Query: 109 VAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG------NVIVDLGNSD 162 + + QK+ E EF +VGE+I V+ ++ I++L + Sbjct: 61 DLINKMIAIFNQKISETNFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTK 120 Query: 163 GVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNG 222 G I + E E L G + I +++R+ + LSR+ + + L PEI NG Sbjct: 121 GYISKRELSKGERLEIGKKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENG 180 Query: 223 IVQVKAVSRDPGSRAKLAVFSSDS-SIDPVGACVGMR 258 + +K + R PG ++K+AV S+D+ S DPV A +G + Sbjct: 181 TIVIKKIERSPGVKSKIAVISNDACSWDPVAAILGPK 217 >gi|56807387|ref|ZP_00365366.1| COG0195: Transcription elongation factor [Streptococcus pyogenes M49 591] Length = 154 Score = 128 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 87/151 (57%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E+L+ + EK ID+ ++ + +S++ A + YG +E N +T D +F + E Sbjct: 4 EMLEAFRILEEEKHIDKADIIDAVTESLKSAYKRRYGQSESCVIEFNEKTADFQVFTVRE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 VVEEV + +ISLK A + ++G + +FGRVA QSAKQ I++K+R R Sbjct: 64 VVEEVFDSRLEISLKDALAISSAYELGDKIRFEESVNEFGRVAAQSAKQTIMEKMRRQMR 123 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDL 158 + + E+K+ GEI++GTV+R + + V+L Sbjct: 124 EVMFNEYKEHEGEIMTGTVERFDQRFIYVNL 154 >gi|213021473|ref|ZP_03335920.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 156 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 345 EEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEE 404 ++ Q + + + F + +++DE A +LV EGF+ +EELA V + E+ I+G DE Sbjct: 3 DDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEP 62 Query: 405 TAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAG 464 T ++ RA+ L + + + + +++L ++ G+D + L G+ T+EDLA Sbjct: 63 TVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLAD 122 Query: 465 CSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKE 515 +DDL G ++ +I+ AR + W E Sbjct: 123 QGIDDLADIE-----------------GLTDEKAGELIMAAR-NICWFGDE 155 >gi|169245954|gb|ACA50975.1| nucleic acid binding protein [Mycobacterium marinum DL240490] Length = 182 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 3/134 (2%) Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ V L E+I Sbjct: 42 VPELAQQLVDIVAIARIPGVRAKVAVRSCVAGINPVSVCIGWGGLRIADVEKGLGGERIH 101 Query: 276 IVVWSPDSATFVINALR-PAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332 +V + D AT+VINAL P T + RI V V +G+ GQNVRLAS Sbjct: 102 VVAYHVDPATYVINALGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTVGKAGQNVRLAS 161 Query: 333 QLTGWTIDIITEEE 346 +LTG I+I+ E+ Sbjct: 162 KLTGQKIEILVEKS 175 >gi|209418048|ref|YP_002274077.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT] gi|169409180|gb|ACA57586.1| nucleic acid binding protein [Mycobacterium liflandii 128FXT] Length = 184 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 5/136 (3%) Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ V L E+I Sbjct: 42 VPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIADVEKGLGGERIH 101 Query: 276 IVVWSPDSATFVINALR-----PAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 +V + D AT+VINAL +E RI V V +G+ GQNVRL Sbjct: 102 VVAYHVDPATYVINALGCPGTGTGTGAAAAAEERSRRIRVRVEAHDYPRTVGKAGQNVRL 161 Query: 331 ASQLTGWTIDIITEEE 346 AS+LTG I+I+ E+ Sbjct: 162 ASKLTGQKIEILVEKS 177 >gi|49146092|ref|YP_025530.1| nucleic acid binding protein [Mycobacterium ulcerans Agy99] gi|42414726|emb|CAE46819.1| possible nucleic acid binding protein [Mycobacterium ulcerans Agy99] Length = 182 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 VPE+ +V + A++R PG RAK+AV S + I+PV C+G G R+ V L E+I Sbjct: 42 VPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIADVEKGLGGERIH 101 Query: 276 IVVWSPDSATFVINALR-PAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332 +V + D AT+VIN L P T + RI V V +G+ GQNVRLAS Sbjct: 102 VVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTVGKAGQNVRLAS 161 Query: 333 QLTGWTIDIITEEE 346 +LTG I+I+ E+ Sbjct: 162 KLTGQKIEILVEKS 175 >gi|296163996|ref|ZP_06846621.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900648|gb|EFG80029.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 148 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 74/144 (51%) Query: 216 VPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKID 275 +PE+ NG V++ AV+R+PG AK+AV S I+ V C+G G R+ V L E + Sbjct: 1 MPELANGSVEIIAVAREPGLLAKVAVRSRVRGINAVAVCIGWGGLRIADVEKRLCGEHVS 60 Query: 276 IVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLT 335 I+ + D+A +VINAL V++ + RI V V + + A+G+ G N+RL QLT Sbjct: 61 IIAYDSDTARYVINALGIKSAIAEVINPEQRRIRVYVNPDDYARALGKVGHNLRLVRQLT 120 Query: 336 GWTIDIITEEEDSINRQKDFNERT 359 +I I T + Sbjct: 121 SCSIHIRTATGANRAPMVAPPGSC 144 >gi|308804463|ref|XP_003079544.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri] gi|116057999|emb|CAL54202.1| putative transcriptional termination/an (ISS) [Ostreococcus tauri] Length = 615 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 145/363 (39%), Gaps = 56/363 (15%) Query: 13 ADAVAYEKS---IDRDVVLSVMADSIQKAARSLYGTMS------------DIRVEINPET 57 A+A +KS D + L +A +I + + G+ D+ V+I+ E Sbjct: 216 LRALAKDKSGYEADTGMHLEAIARAITTMYKEIPGSALRLIQRERRDARLDVSVDIDVER 275 Query: 58 GDI----SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQS 113 G +F VE + T + + + R ++ Sbjct: 276 GRFAVLVQVFGRSGTVEREYDDTK------------------FFTFNIRRQNRMRTLIRY 317 Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDL-GNSDGVIRRDETI 171 + + V + +++G + GT R E G+ +VD+ + GVI +E + Sbjct: 318 MSEEMKSGV----ARMATENYVEQIGSLCVGTTRFRSEDGSWMVDIADGAAGVIPPEEQL 373 Query: 172 SREN---LRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 N L+ GD V Y+ DV + + V+LS T P + + EVPEI G V Sbjct: 374 QLFNDRQLKQGDEVSCYVLDVDQNLFTGREQTPVVLSMTIPAVVAAIIRDEVPEIAKGDV 433 Query: 225 QVKAVSRDPGSRAKLAVFSSDSS--IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPD 282 ++KA++R G K+AV S + + CVG+ R++ + E + + WS D Sbjct: 434 EIKAIARIAGKITKVAVAPVPGSSIWNTIDVCVGVDQVRLKRIRERAGGEVVHFINWSDD 493 Query: 283 SATFVINALRPAIVTKV---VLDEDVG-RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V AL PA V V D + V + + AIG G NV+L + LT Sbjct: 494 PSEVVKAALFPADVKSVEKSFPDGSQRPKFTAYVSEFDVKRAIGTNGNNVKLCAALTNSF 553 Query: 339 IDI 341 + I Sbjct: 554 VVI 556 >gi|331006261|ref|ZP_08329581.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] gi|330419950|gb|EGG94296.1| Transcription termination protein NusA [gamma proteobacterium IMCC1989] Length = 159 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 19/178 (10%) Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 ++ E+ ++++ + + FM+A++VDE +A +LV EGF +EE+A V + E+ IEGF Sbjct: 1 MSVEQWEDKQEQEAGGQVELFMEALDVDEDVAAVLVEEGFTSLEEVAYVPLEEMLGIEGF 60 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 DE+ A E++ RA++ L + ++K+ +E+L ++ G+D+ + L + G+ MED Sbjct: 61 DEDIANELRSRAKDTLLTKALASEEKLEGAEPAEDLVAMEGMDNALAAVLAKRGVVCMED 120 Query: 462 LAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVAD 519 LA +VD+LL G +++ ++I+ AR W + ++ Sbjct: 121 LAEQAVDELLDID-----------------GMTEERAAALIMKAREP--WFASSETSE 159 >gi|145346768|ref|XP_001417855.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578083|gb|ABO96148.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 710 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 156/392 (39%), Gaps = 60/392 (15%) Query: 13 ADAVAYEKSIDRDVV---LSVMADSIQKAAR-----------SLYGTMSDIRVEINPETG 58 A+A EK V L +A +I + R D+ V+I+ + G Sbjct: 216 LRALAKEKEGYEADVGLHLEAIARAIDRGYRDMRGSALTVLQKEVRARIDVSVDIDVQRG 275 Query: 59 DISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDF------GRVAVQ 112 ++ L++VV GG V F + ++ Sbjct: 276 RFAV--LVQVVGR----------------------GGTVEREYDDTKFFTFNVRRQNRMR 311 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTV-KRVEYGNVIVDL-GNSDGVIRRDET 170 + + + ++++ +F ++G ++ GT+ R E G+ ++D+ G + GVI +E Sbjct: 312 TLIRYMSEEIKTGVARLATEDFVGQIGNVVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQ 371 Query: 171 ISREN---LRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + N L+ GD + ++ DV + + V+LS T P + + EVPE+ G Sbjct: 372 LLTYNDLPLKQGDELSCFVLDVDQNLFTGREQTPVVLSMTIPALVGAIIREEVPEVARGE 431 Query: 224 VQVKAVSRDPGSRAKLAVFSSDSSI---DPVGACVGMRGSRVQAVVTELRDEKIDIVVWS 280 +++K+++R G K+AV + S + V C+G S ++ + E + + WS Sbjct: 432 IEIKSIARMAGKVTKVAVALREGSTSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWS 491 Query: 281 PDSATFVINALRPAIVTKVVLDE----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG 336 D A + ++L PA V +V + V + L AIG G NV+L + LT Sbjct: 492 DDPAELIKSSLFPAEVLRVEESFPDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTN 551 Query: 337 WTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 I I +E +++ Sbjct: 552 AFIVIEVDETAGNTQRRGSFNDDLDDSYDSGF 583 >gi|303279869|ref|XP_003059227.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459063|gb|EEH56359.1| predicted protein [Micromonas pusilla CCMP1545] Length = 511 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 106/261 (40%), Gaps = 20/261 (7%) Query: 111 VQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVD--LGNSDGVIRRD 168 ++ ++ E ++ + GE++ TV + + + + Sbjct: 2 MRKLAYAFTDELSECVAATAANSYRVRTGEMVEATVVSEGRRGEYLLKLDDGAFACLPAE 61 Query: 169 ETISRENLRPGDRVKSYIYDVRRE----QRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIV 224 E I + GDRV + + V + R V++S + ++ EVPE+ G V Sbjct: 62 EGIPEKRYGQGDRVSALVLGVEDQTWAADRRAPVVVSTAIAGLLAEVLKKEVPEVATGDV 121 Query: 225 QVKAVSRDPGSRAKLAVFSSDS---SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 +++V+R G +K+AV D + DPV ACVG SR+ A+ L E I+ WS Sbjct: 122 VIRSVARVSGKMSKVAVSRRDGAVGTWDPVLACVGENNSRMLAIRERLGGETCQILTWSD 181 Query: 282 DSATFVINALRPAIVTKVVLDEDV-----------GRIEVIVPKEQLSLAIGRRGQNVRL 330 V AL PA V +V + + V + + AIG G NV+L Sbjct: 182 VQEEMVAEALFPAQVVRVDKALEEADEHGGKEFAMDKYVAYVNQFDEAKAIGAGGINVKL 241 Query: 331 ASQLTGWTIDIITEEEDSINR 351 A+ L G I I E + + Sbjct: 242 AAALCGCFILIERYEPGNAHE 262 >gi|118795363|ref|XP_561027.4| Anopheles gambiae str. PEST AGAP012738-PA [Anopheles gambiae str. PEST] gi|116133283|gb|EAL42227.2| AGAP012738-PA [Anopheles gambiae str. PEST] Length = 129 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 1/126 (0%) Query: 147 KRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 +++D ++ ++ ++ I + R GD V++ I V + + PQ+++SRT P+ Sbjct: 2 HIRHKHVILLDDEGNEFILPKENQIPSDFFRKGDSVRAVIESVDKGSK-PQIIVSRTAPK 60 Query: 207 FMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVV 266 F+ KL +E+PEI +G + +K V R PG +AK+AV + D IDPVGACVG++GSR+ VV Sbjct: 61 FLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVDAYDDRIDPVGACVGVKGSRIHGVV 120 Query: 267 TELRDE 272 ELR+E Sbjct: 121 RELRNE 126 >gi|153873980|ref|ZP_02002373.1| transcription elongation factor NusA [Beggiatoa sp. PS] gi|152069557|gb|EDN67628.1| transcription elongation factor NusA [Beggiatoa sp. PS] Length = 99 Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 ++L + D V+ EK + ++V+ + + +I A + Y D+RV I+ TGD FR Sbjct: 2 NKDILLVVDVVSNEKGVSKEVIFNALECAIASATKKRYEGEVDVRVHIDRRTGDYKAFRR 61 Query: 66 LEVVEEVEN---YTCQISLKVARDRDPSIDIGGVVS 98 + VEE E Q++L A+ +P+I IG Sbjct: 62 WQAVEEEEELDSPHTQMNLTEAQIHNPNIAIGEWFE 97 >gi|254993851|ref|ZP_05276041.1| transcription elongation factor NusA [Listeria monocytogenes FSL J2-064] Length = 104 Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 53/101 (52%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 ELL + ++K I R+V++ + ++ A + + ++RV++N E G I + E Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENGSIRVLARKE 63 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGR 108 VE+V + +IS++ A +P G VV + P DFGR Sbjct: 64 AVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDFGR 104 >gi|56808097|ref|ZP_00365889.1| COG0195: Transcription elongation factor [Streptococcus pyogenes M49 591] Length = 164 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 15/144 (10%) Query: 226 VKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD-------------- 271 + +VSR+ G R K+AV S + ++D +G VG GS ++ V+++ Sbjct: 1 MMSVSREAGDRTKVAVRSHNPNVDAIGTMVGRGGSNIKKVISKFHPKRVDAKTGLEIPVE 60 Query: 272 EKIDIVVWSPDSATFVINALRPAIVTKVVLD-EDVGRIEVIVPKEQLSLAIGRRGQNVRL 330 E ID++ W D A F+ NA+ PA V V+ D ED+ R V+VP +LSLAIGRRGQNVRL Sbjct: 61 ENIDVIQWVDDPAEFIYNAIAPAEVDMVLFDDEDLKRATVVVPDSKLSLAIGRRGQNVRL 120 Query: 331 ASQLTGWTIDIITEEEDSINRQKD 354 A+ LTG+ IDI + E + Sbjct: 121 AAHLTGYRIDIKSASEYDRLEAEK 144 >gi|207109944|ref|ZP_03244106.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 127 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 1/122 (0%) Query: 152 GNVIVDLGNS-DGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVK 210 N +++ GV+ I E+ + GD +K+ + V+R ++G + LSRT P+ + Sbjct: 1 QNTFIEIEQQFQGVLSMRHRIKGESFKVGDSIKAVLTQVKRTKKGLLLELSRTTPKMLEA 60 Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270 L +EVPEI + +++ +R PG+RAK++ FS ++ IDP+GA VG++G R+ A+ EL Sbjct: 61 LLELEVPEIKDKEIEIIHCARIPGNRAKVSFFSHNARIDPIGAAVGVKGVRINAISNELN 120 Query: 271 DE 272 + Sbjct: 121 KD 122 >gi|33322909|gb|AAQ07191.1|AF496499_1 transcription termination/antitermination factor [Lactobacillus delbrueckii subsp. lactis] Length = 95 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 2/95 (2%) Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVW 279 ++G V++ +++R+ G R K+AV S+D +IDPVG CVG RGSRVQ VV EL E IDIV + Sbjct: 1 FDGTVEIISIAREAGERTKIAVKSNDPNIDPVGTCVGPRGSRVQNVVNELGGENIDIVQY 60 Query: 280 SPDSATFVINALRPAIVTKVVL--DEDVGRIEVIV 312 D + ++ NAL PA V V ++D + VIV Sbjct: 61 EEDPSDYIANALNPAEVIAVQFEDEDDERKAFVIV 95 >gi|12240026|gb|AAG49545.1|AF261103_1 NusA protein [Myxococcus xanthus DK 1622] Length = 254 Score = 99.7 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 95/197 (48%), Gaps = 19/197 (9%) Query: 282 DSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D A FV +AL PA V++V++DE +E+IVP +QLSLAIGRRGQNVRLA+QLTGW +DI Sbjct: 1 DPARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDI 60 Query: 342 ITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGF 401 +E R+ V+E++ L A GF ++A +A + G Sbjct: 61 NSESRVRELREFANRSLGSLP----GVNEMLVETLYAHGFRQARDIAEANAELLAQLPGI 116 Query: 402 DEETAVEIQGRAR-------------EYLEGIDITLQKKI--RELGVSEELCSIPGIDSK 446 D +Q AR +Y + + EL E + + G+ K Sbjct: 117 DPARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQPERMARVRGVGEK 176 Query: 447 IKVALGENGIKTMEDLA 463 L G +++ED+A Sbjct: 177 TIEQLILAGYRSVEDIA 193 >gi|153812997|ref|ZP_01965665.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174] gi|149830944|gb|EDM86034.1| hypothetical protein RUMOBE_03404 [Ruminococcus obeum ATCC 29174] Length = 139 Score = 97.4 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 47/93 (50%), Positives = 61/93 (65%) Query: 257 MRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQ 316 M G+RV ++V ELR EKIDI+ W + A + NAL PA V V+ D D V+VP Q Sbjct: 1 MNGARVNSIVEELRGEKIDIINWDENPAILIENALSPAKVIAVMADPDEKTALVVVPDYQ 60 Query: 317 LSLAIGRRGQNVRLASQLTGWTIDIITEEEDSI 349 LSLAIG+ GQN RLA++LTG+ IDI +E + Sbjct: 61 LSLAIGKEGQNARLAARLTGFKIDIKSETQARE 93 >gi|254669624|emb|CBA03668.1| N utilization substance protein A [Neisseria meningitidis alpha153] Length = 136 Score = 95.8 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG-TMSDIRVEINPETGDISLFRLL 66 E+LQ+A+A+A EK++D +VV + ++ AA+ D+RV+IN +TG+ FR Sbjct: 9 EMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTFRRW 68 Query: 67 EVVEEVE 73 +V + + Sbjct: 69 LIVADED 75 >gi|215428280|ref|ZP_03426199.1| transcription elongation factor NusA [Mycobacterium tuberculosis T92] gi|289751502|ref|ZP_06510880.1| N utilization substance protein A nusA [Mycobacterium tuberculosis T92] gi|289692089|gb|EFD59518.1| N utilization substance protein A nusA [Mycobacterium tuberculosis T92] Length = 166 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 30/179 (16%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVV 69 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV------- 57 Query: 70 EEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDR 129 +AR+ D + ++ D P FGR+A +A+QV++Q+ R+AE +R Sbjct: 58 -------------IARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRDAENER 102 Query: 130 QYLEFKDKVGEIISGTVKRVEYGN----VIVDLGN----SDGVIRRDETISRENLRPGD 180 Y EF + GEI++G ++R N V+V +G S+GVI E + + Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPPPEPVPGRAMNMAT 161 >gi|59041351|gb|AAW83814.1| putative transcription elongation factor [Legionella pneumophila] Length = 99 Score = 87.0 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 20/118 (16%) Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 + +IE FDEE E++ +A + L + ++ K + + L ++ G+ + L Sbjct: 1 LPAIEEFDEEIVEELRNKANDKLLEMALSSGKGLSG-TPDDSLINMEGMTEDLANKLASK 59 Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 GI TMEDLA SVD+L+ G +++ ++I+ AR W Sbjct: 60 GIATMEDLAEQSVDELMEIE-----------------GISEEKAGALIMKAREP--WF 98 >gi|228311785|pdb|2JZB|B Chain B, Solution Structure Of The Complex Between E.Coli Nusa-Ar2 And Rnap-Actd Length = 74 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 18/89 (20%) Query: 427 KIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 3 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE------------ 50 Query: 487 FLSSLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 51 -----GLTDEKAGALIMAAR-NICWFGDE 73 >gi|213425432|ref|ZP_03358182.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 62 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 E+L + +AV+ EK++ R+ + + ++ A + Y D+RVEI+ ++GD FR+ Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRV 61 >gi|159163265|pdb|1WCN|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of Escherichia Coli Nusa Length = 70 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 18/86 (20%) Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 + +++L ++ G+D + L G+ T+EDLA +DDL Sbjct: 2 DNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE--------------- 46 Query: 490 SLGTPKDQVESMIIHARYKMGWIEKE 515 G ++ ++I+ AR + W E Sbjct: 47 --GLTDEKAGALIMAAR-NICWFGDE 69 >gi|253734580|ref|ZP_04868745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|253727445|gb|EES96174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] Length = 73 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 E+ IEG DE T ++ RA+ L I ++ + + +++L ++ G+D + L Sbjct: 1 KELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLA 60 Query: 453 ENGIKTMEDLAGC 465 G+ T+EDLA Sbjct: 61 ARGVCTLEDLAEQ 73 >gi|218678853|ref|ZP_03526750.1| transcription elongation factor NusA [Rhizobium etli CIAT 894] Length = 82 Score = 75.4 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 47/72 (65%) Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWI 512 E+GIKT+ED AGC+ DDL+GW+E K G +KF+G S + + E MI+ AR GWI Sbjct: 1 EDGIKTIEDFAGCAADDLVGWTERKNGETKKFEGLFSKFDVSRVEAEQMIVQARLSAGWI 60 Query: 513 EKEKVADEEVQD 524 +E +A E ++ Sbjct: 61 TQEDLAKEAEEE 72 >gi|261886075|ref|ZP_06010114.1| transcription elongation factor NusA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 124 Score = 75.0 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEV 68 + I +++A E ++ + V + + AA+ LYG + ++P T I L++ + V Sbjct: 4 ISDIIESIANEICLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKILV 63 Query: 69 VEEVE---NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 VE+ + + ISLK A + D +++IG ++ L + GR Sbjct: 64 VEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGA 109 >gi|291532986|emb|CBL06099.1| NusA N-terminal domain [Megamonas hypermegale ART12/1] Length = 67 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 M + ++ L V EK I +V+ + ++ A + + T S++RV + TG+ Sbjct: 1 MATKDKG-FLDALKEVGQEKGIAPEVLFEAVEAALVSAYKRNFNTASNVRVYLERATGEF 59 Query: 61 SLFRLLE 67 ++ + Sbjct: 60 HVYAQKK 66 >gi|76664821|emb|CAJ17848.1| transcription terminator nusA [Candidatus Phytoplasma solani] Length = 162 Score = 70.4 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 19 EKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE----- 73 E+ + R V+ + + + + RV++ +I L++ V ++ Sbjct: 1 ERDLPRKEVIEAFGKGLIAGCKKNH-QVKSCRVQMRENKSEILLYKQFIVADKTNIGMIN 59 Query: 74 -NYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 I L A+ P +G ++ + P +F A++ K +++ + +R+ Y Sbjct: 60 LKELTPIDLSEAQTIKPQAKVGQIIEIKVDPKEFNLYAIKEFKNQFNEELTKRKRENIYH 119 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGN-SDGVIRRDETISR 173 FK++ G++IS V ++L ++ + E Sbjct: 120 FFKEQEGKLISAKVISENERFYNLELEKEITTLLPKKEISDN 161 >gi|23008735|ref|ZP_00050053.1| hypothetical protein Magn03003752 [Magnetospirillum magnetotacticum MS-1] Length = 97 Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 464 GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIE--KEKVADEE 521 GC+ DDL+G++E +G + GFL + + E++I+ AR GWIE E A+ Sbjct: 3 GCANDDLVGYTEGRGPEAVRHAGFLDGFELSRAEAEALIMAARVHAGWIEAPPEPEAESV 62 Query: 522 VQDAS 526 +AS Sbjct: 63 EGEAS 67 >gi|315302976|ref|ZP_07873696.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] gi|313628656|gb|EFR97069.1| transcription termination factor NusA [Listeria ivanovii FSL F6-596] Length = 55 Score = 63.1 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 ELL + ++K I R+V++ + ++ A + + ++RV++N E G Sbjct: 4 ELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQNVRVDLNMENG 54 >gi|333000299|gb|EGK19882.1| transcription elongation protein nusA domain protein [Shigella flexneri K-218] Length = 62 Score = 59.2 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKN 38 >gi|312972558|ref|ZP_07786731.1| transcription elongation nusA domain protein [Escherichia coli 1827-70] gi|310332500|gb|EFP99713.1| transcription elongation nusA domain protein [Escherichia coli 1827-70] gi|323173570|gb|EFZ59199.1| transcription elongation protein nusA domain protein [Escherichia coli LT-68] Length = 62 Score = 59.2 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKN 38 >gi|294670566|ref|ZP_06735445.1| hypothetical protein NEIELOOT_02288 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307691|gb|EFE48934.1| hypothetical protein NEIELOOT_02288 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 63 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLY 43 E+LQ+A+A+A EK++D DVV + ++ AA+ Sbjct: 4 EMLQLAEALASEKNVDTDVVFDALEFALSTAAKKKP 39 >gi|20094120|ref|NP_613967.1| transcription elongation factor NusA-like protein [Methanopyrus kandleri AV19] gi|19887121|gb|AAM01897.1| Transcription elongation factor NusA [Methanopyrus kandleri AV19] Length = 142 Score = 56.5 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 +G +G +G V+ V +L + +++V S D F+ NAL PA V V + E + Sbjct: 45 IGLAIGKKGQNVRRVQEQLGMD-VEVVEHSEDPEKFIRNALFPARVKSVRVTERGNKKVA 103 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334 V VP+ + IG+ G+N++ A L Sbjct: 104 IVDVPESERGRVIGKGGRNIKKARIL 129 >gi|219558858|ref|ZP_03537934.1| transcription elongation factor NusA [Mycobacterium tuberculosis T17] gi|289571029|ref|ZP_06451256.1| N utilization substance protein A [Mycobacterium tuberculosis T17] gi|289544783|gb|EFD48431.1| N utilization substance protein A [Mycobacterium tuberculosis T17] Length = 78 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 10 LQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRL 65 + A+ ++ I + +L + ++ A R G +D R+EI+ +TG + + Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 >gi|11499475|ref|NP_070716.1| transcription elongation factor NusA-like protein [Archaeoglobus fulgidus DSM 4304] gi|2648654|gb|AAB89363.1| transcription termination-antitermination factor NusA, putative [Archaeoglobus fulgidus DSM 4304] Length = 139 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI-VTKVVLDEDV 305 +G +G G V+ EL ++I+I+ S D A F+ N +P K++ E Sbjct: 39 RRGHMGVAIGKGGINVER-ARELIGKRIEIIEHSEDPAEFIANIFKPIKVNVKLMEKEGS 97 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V V + + IG+ G+N+ A +L Sbjct: 98 KIAVVSVSPDLKGIVIGKGGKNINKAKELAKRH 130 >gi|15679067|ref|NP_276184.1| transcription elongation factor NusA-like protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622153|gb|AAB85545.1| transcription termination factor NusA [Methanothermobacter thermautotrophicus str. Delta H] Length = 143 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK-IDI 276 E G + + D R V D +G +G +GS V V L +K +++ Sbjct: 17 ESMTGAMVKDCIVDDENGRVTFLVKKGD-----MGLAIGKKGSTVAKVQKAL--DKGVEV 69 Query: 277 VVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 + S D F+ N + PA V + + + V + +AIGR GQN+ A Sbjct: 70 IEHSNDPVEFIKNLMAPAKVRSIRILQKENGEKIATVETDPKNKRIAIGRGGQNIERARL 129 Query: 334 L 334 L Sbjct: 130 L 130 >gi|159163264|pdb|1WCL|A Chain A, Nmr Structure Of The Carboxyterminal Domains Of Escherichia Coli Nusa Length = 76 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 3 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 62 Query: 416 YLEGIDITLQKKI 428 L I ++ + Sbjct: 63 ALATIAQAQEESL 75 >gi|307256659|ref|ZP_07538438.1| hypothetical protein appser10_6620 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864707|gb|EFM96611.1| hypothetical protein appser10_6620 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 47 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 19/35 (54%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L A+AV+ EK + ++ + + ++ + + Sbjct: 4 EILLAAEAVSNEKLLPKEAIFEALETALAISTKKK 38 >gi|304315189|ref|YP_003850336.1| transcription termination factor [Methanothermobacter marburgensis str. Marburg] gi|302588648|gb|ADL59023.1| transcription termination factor [Methanothermobacter marburgensis str. Marburg] Length = 143 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEK-IDI 276 E G + + D + V D +G +G +GS V V L +K +++ Sbjct: 17 ESMTGAMVKDCIVDDENGKVTFLVKKGD-----MGLAIGKKGSTVAKVQKAL--DKGVEV 69 Query: 277 VVWSPDSATFVINALRPAIVTKVVLDED---VGRIEVIVPKEQLSLAIGRRGQNVRLASQ 333 + S D F+ N + PA + + + + V + +AIGR GQN+ A Sbjct: 70 IEHSSDPVEFIKNLMAPAKIRSIRILQKENGEKIATVETDPKNKRIAIGRGGQNIERARL 129 Query: 334 L 334 L Sbjct: 130 L 130 >gi|327401229|ref|YP_004342068.1| NusA family KH domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316737|gb|AEA47353.1| NusA family KH domain protein [Archaeoglobus veneficus SNP6] Length = 139 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IE 309 +GA +G G ++ EL ++I+++ S D A F++N +P V ++++ + + Sbjct: 43 MGAAIGKGGINIER-ARELMGKRIEVIEHSDDPAEFIVNIFKPIKVKVKLIEKGGKKIAQ 101 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQL 334 V V + LAIG+ G+N+ A +L Sbjct: 102 VGVDPQYKGLAIGKGGKNINKAKEL 126 >gi|19915104|gb|AAM04679.1| transcription termination factor NusA [Methanosarcina acetivorans C2A] Length = 149 Score = 51.5 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-- 307 +G +G G + V L +K I++V +S D TF+ NA P V+ V L G+ Sbjct: 52 MGLAIGKNGENINRVKKAL--DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRL 109 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 110 AYVEVPNKEKGLAIGRNGKNIEKVKML 136 >gi|21228370|ref|NP_634292.1| transcription elongation factor NusA-like protein [Methanosarcina mazei Go1] gi|20906840|gb|AAM31964.1| NusA protein homolog [Methanosarcina mazei Go1] Length = 141 Score = 51.1 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308 +G +G G + V L I++V +S D TF+ NA P V+ V L G+ Sbjct: 44 MGLAIGKNGENINRVKKALDK-PIELVEYSEDPVTFIKNAFGPVSVSSVNLTNKNGKRLA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKML 128 >gi|161484938|ref|NP_616199.2| transcription elongation factor NusA-like protein [Methanosarcina acetivorans C2A] Length = 141 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-- 307 +G +G G + V L +K I++V +S D TF+ NA P V+ V L G+ Sbjct: 44 MGLAIGKNGENINRVKKAL--DKPIELVEYSEDPVTFIKNAFGPVSVSSVNLTTKNGKRL 101 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 102 AYVEVPNKEKGLAIGRNGKNIEKVKML 128 >gi|254172398|ref|ZP_04879073.1| NusA family KH domain protein, archaeal [Thermococcus sp. AM4] gi|214033327|gb|EEB74154.1| NusA family KH domain protein, archaeal [Thermococcus sp. AM4] Length = 145 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G +G+ V+ V + E I+++ S + F+ N + V K+ + E Sbjct: 45 MGLALGKKGANVKRVQNMIGKE-IELIEHSENPEEFLRNIYKSLGVKVKKIHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + + + AIGR GQN+ L QL Sbjct: 104 KVALLDISPREKPRAIGRGGQNINLVKQLMERH 136 >gi|116753357|ref|YP_842475.1| NusA family protein [Methanosaeta thermophila PT] gi|116664808|gb|ABK13835.1| NusA family KH domain protein [Methanosaeta thermophila PT] Length = 143 Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G + + + R + D +GA +G +GS + V + +I+IV +S Sbjct: 22 GGMARDCIVDEENDRIIFVIQKGD-----MGAAIGRKGSNINRVKKSIGK-QIEIVEYSD 75 Query: 282 DSATFVINALRPAIVTKVVLDEDVGR--IEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 D F+ N +PA V +++ + V V + +AIGR G+N+ A L Sbjct: 76 DVKEFLQNLFQPADVKNIMVVNKNNKRLAYVEVANKDKGIAIGRDGRNILKAKMLAQRH 134 >gi|213581727|ref|ZP_03363553.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 36 Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 20/35 (57%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAAR 40 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATK 36 >gi|88601374|ref|YP_501552.1| NusA family protein [Methanospirillum hungatei JF-1] gi|88186836|gb|ABD39833.1| NusA family KH domain protein [Methanospirillum hungatei JF-1] Length = 142 Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRIEVIV 312 +G +G ++ +I+ V +S D A F+ N PA V +V + V++ Sbjct: 49 IGKKGVNIKKASESFGK-RIEAVEYSDDPAQFIRNCFHPAQVKEVQFSDYHGEQIAHVVI 107 Query: 313 PKEQLSLAIGRRGQNVRLASQL 334 E AIG+ G+N+ L Sbjct: 108 RDEDRGRAIGKAGKNLNRTKML 129 >gi|288561065|ref|YP_003424551.1| transcription elongation factor NusA-like protein [Methanobrevibacter ruminantium M1] gi|288543775|gb|ADC47659.1| transcription elongation factor NusA-like protein [Methanobrevibacter ruminantium M1] Length = 134 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 9/120 (7%) Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 E G + + D S+ V + D +G + G+ V V + ++I+ Sbjct: 8 ESMTGAMVKDCIIDDENSKVTFVVKNGD-----MGLAIAKGGTTVTKVKKAVGR-GVEII 61 Query: 278 VWSPDSATFVINALRPAIVTKVVL---DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 ++ D F+ N L PA + + + + D V +AIG+ G N+ A L Sbjct: 62 EYNEDPEQFIKNILSPAELKSIKIVTKNNDEKIAFVNTDSSNKRIAIGKGGINIERAKLL 121 >gi|240103979|ref|YP_002960288.1| transcription elongation factor NusA-like protein [Thermococcus gammatolerans EJ3] gi|239911533|gb|ACS34424.1| Transcription termination-antitermination factor, NusA-like protein (nusA) [Thermococcus gammatolerans EJ3] Length = 145 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G +G+ V+ V + + I+++ S + F+ N + V K+ + E Sbjct: 45 MGLALGKKGANVKRVQNMIGKD-IELIEHSENPEEFLRNIYKSLGVKVKKIHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + + + AIGR GQN+ L QL Sbjct: 104 KVALLDISPREKPRAIGRGGQNINLVKQLMERH 136 >gi|332203718|gb|EGJ17785.1| nusA N-terminal domain protein [Streptococcus pneumoniae GA47368] Length = 76 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 26/49 (53%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPE 56 E+L+ + +K I ++ ++ + +S++ A R YG + ++ N + Sbjct: 4 EMLEAFRILEEDKGIKKEDIIDAVVESLRSAYRRRYGQSDSVAIDFNEK 52 >gi|282163891|ref|YP_003356276.1| NusA protein homolog [Methanocella paludicola SANAE] gi|282156205|dbj|BAI61293.1| NusA protein homolog [Methanocella paludicola SANAE] Length = 147 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%) Query: 236 RAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAI 295 R V S D +G +G G+ + V ++ ++++ ++ D F+ N +PA Sbjct: 37 RIVFVVKSGD-----MGLAIGKNGNNINRVKKQIGR-HVEVIEYNEDPKEFIKNLFQPAT 90 Query: 296 VTKVVLDEDVGR--IEVIVPKEQLSLAIGRRGQNV 328 V +V+ R V V + LAIG+ G+N+ Sbjct: 91 VKNIVISTKGERTLAIVDVATKDKGLAIGKNGRNI 125 >gi|315230009|ref|YP_004070445.1| NusA-like protein [Thermococcus barophilus MP] gi|315183037|gb|ADT83222.1| NusA-like protein [Thermococcus barophilus MP] Length = 145 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDEDV--- 305 +G +G RG V+ + + L E ID++ S + F+ N + V KV + E Sbjct: 45 MGLALGKRGMNVRRIQSMLGKE-IDLIEHSENPEEFLRNIYKTMGVRVKKVHITEKKNGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V + AIGR G N+ L +L Sbjct: 104 KVALLDVNQRDKPRAIGRGGHNINLVKELMERH 136 >gi|305663639|ref|YP_003859927.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230] gi|304378208|gb|ADM28047.1| NusA family KH domain protein [Ignisphaera aggregans DSM 17230] Length = 146 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DV 305 D +G +G +G V+ + + + ++IV W + FV N PA V ++ L E D Sbjct: 46 SDKLGQAIGRKGINVKYLSKLIGKD-VEIVGWGNNLEDFVKNIFMPARVQRIQLVEGRDK 104 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 + V V +AIG+ G+NV A L Sbjct: 105 KIVYVYVDPRDKGIAIGKNGRNVAKARLLLNRYF 138 >gi|312136872|ref|YP_004004209.1| nusa family kh domain protein [Methanothermus fervidus DSM 2088] gi|311224591|gb|ADP77447.1| NusA family KH domain protein [Methanothermus fervidus DSM 2088] Length = 143 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDED---VG 306 +G +G RGS + V L +K ++++ S D F+ N L PA + + + + Sbjct: 45 MGLAIGRRGSTIAKVRKTL--DKGVEVLEHSDDPVEFISNILSPAKLKSIRILQKENGEK 102 Query: 307 RIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V + IG+ GQN++ A L Sbjct: 103 IATVKADARNKRIIIGKGGQNIKRAKILAKRH 134 >gi|57641014|ref|YP_183492.1| transcription elongation factor NusA-like protein [Thermococcus kodakarensis KOD1] gi|57159338|dbj|BAD85268.1| transcription termination-antitermination factor, NusA homolog [Thermococcus kodakarensis KOD1] Length = 145 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G +G+ V+ V L E I+++ S + F+ N + V KV + E Sbjct: 45 MGLALGKKGANVKRVQGMLGKE-IELIEHSENPEEFLRNIYKSLGVKVKKVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V AIGR GQN+ L +L Sbjct: 104 KVALLDVGPRDKPRAIGRGGQNINLVKELMERH 136 >gi|212223367|ref|YP_002306603.1| transcription elongation factor NusA-like protein [Thermococcus onnurineus NA1] gi|212008324|gb|ACJ15706.1| transcription termination-antitermination factor [Thermococcus onnurineus NA1] Length = 145 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G +G+ V+ V L E I+++ S + F+ N + V KV + E Sbjct: 45 MGLALGKKGANVKRVQNMLGKE-IELIEHSENPEEFLRNIYKSLGVKVKKVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 + + + AIGR GQN+ L +L I Sbjct: 104 KVALLDIGPREKPRAIGRGGQNINLVKELMERHHGIHD 141 >gi|289825802|ref|ZP_06544970.1| transcription elongation factor NusA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 39 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 20/37 (54%) Query: 6 RLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSL 42 E+L + +AV+ EK++ R+ + + ++ A + Sbjct: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKEK 38 >gi|52696033|pdb|1U9L|A Chain A, Structural Basis For A Nusa- Protein N Interaction gi|52696034|pdb|1U9L|B Chain B, Structural Basis For A Nusa- Protein N Interaction Length = 70 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%) Query: 356 NERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRARE 415 + F + +++DE A +LV EGF+ +EELA V + E+ IEG DE T ++ RA+ Sbjct: 2 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61 Query: 416 YLEGIDITL 424 L I Sbjct: 62 ALATIAQAQ 70 >gi|288931143|ref|YP_003435203.1| NusA family KH domain protein [Ferroglobus placidus DSM 10642] gi|288893391|gb|ADC64928.1| NusA family KH domain protein [Ferroglobus placidus DSM 10642] Length = 139 Score = 49.2 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IE 309 +G +G G V+ E+ +KI+IV S D F+ N +P V ++++ + Sbjct: 43 MGLAIGKGGINVEK-AKEIIGKKIEIVEHSEDPEEFIKNIFKPINVRVKIINKGGKKVAH 101 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V P + IG+ G+N+ A +L Sbjct: 102 VYAPLQYKGFVIGKGGKNINKAKELVRRH 130 >gi|73671117|ref|YP_307132.1| transcription elongation factor NusA-like protein [Methanosarcina barkeri str. Fusaro] gi|72398279|gb|AAZ72552.1| transcription termination factor NusA [Methanosarcina barkeri str. Fusaro] Length = 141 Score = 48.8 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR--I 308 +G +G G + V L I++V +S + TF+ NA P V+ V + G+ Sbjct: 44 MGLAIGRNGENINRVKKALDK-PIELVEYSDEPVTFLKNAFGPVSVSSVNIINKNGKRLA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334 V VP ++ LAIGR G+N+ L Sbjct: 103 YVEVPNKEKGLAIGRNGKNIEKVKML 128 >gi|242398383|ref|YP_002993807.1| NusA like protein [Thermococcus sibiricus MM 739] gi|242264776|gb|ACS89458.1| NusA like protein [Thermococcus sibiricus MM 739] Length = 145 Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDEDV--- 305 +G +G RGS V+ V + + + I+++ S + F+ N + V KV + E Sbjct: 45 MGLALGKRGSNVKRVQSMIGKD-IELIEHSENPEEFIKNIYKTMGVRVKKVHITEKKNGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V + AIG+ GQN+ L +L Sbjct: 104 KVALLDVNQRDKPRAIGKGGQNINLVKELMERH 136 >gi|322369997|ref|ZP_08044559.1| transcription elongation factor NusA-like protein [Haladaptatus paucihalophilus DX253] gi|320550333|gb|EFW91985.1| transcription elongation factor NusA-like protein [Haladaptatus paucihalophilus DX253] Length = 142 Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 11/132 (8%) Query: 211 LFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELR 270 LF E V + G K +F +G +G G V++V +L Sbjct: 15 LFEDETGATARDCVVL-------GDDDKRVIFVVKPG--EMGQAIGPGGKHVRSVEEQLG 65 Query: 271 DEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVPKEQLSLAIGRRGQNVR 329 + +++V + + FV+NAL PA V V + E D V ++ +AIG G+N+ Sbjct: 66 AD-VELVEDADEPDRFVVNALAPAEVRHVTISENDDTVAYAEVAQQDTGVAIGTDGRNIE 124 Query: 330 LASQLTGWTIDI 341 A L D+ Sbjct: 125 AAKLLVSRHFDV 136 >gi|14520834|ref|NP_126309.1| transcription elongation factor NusA-like protein [Pyrococcus abyssi GE5] gi|5458050|emb|CAB49540.1| nusA transcription termination-antitermination factor nusA, putative [Pyrococcus abyssi GE5] Length = 145 Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G RG V+ V L E ID+V S + F+ N + V +V + E Sbjct: 45 MGLALGKRGINVRRVENLLGKE-IDLVEHSENPEEFIKNIYKTMGVKVKRVHITEKKDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V AIGR G N+ + QL Sbjct: 104 KVALLDVNPRDKPKAIGRGGHNINIVRQLMERH 136 >gi|154151469|ref|YP_001405087.1| NusA family protein [Candidatus Methanoregula boonei 6A8] gi|154000021|gb|ABS56444.1| NusA family KH domain protein [Methanoregula boonei 6A8] Length = 154 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRI 308 +G +G +G+ ++ +E +KI++V ++ +S F+ N PA VT +V + D Sbjct: 46 MGLAIGKKGASIKK-ASEAMGKKIEVVEYNSNSEQFLKNCFLPAQVTSIVFSGEPDAQSA 104 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQL 334 V V E +AIG+ G+N+ A +L Sbjct: 105 TVEVRDEDRGIAIGKDGKNIFKAKKL 130 >gi|237757008|ref|ZP_04585463.1| putative N utilization substance protein A [Sulfurihydrogenibium yellowstonense SS-5] gi|237690826|gb|EEP59979.1| putative N utilization substance protein A [Sulfurihydrogenibium yellowstonense SS-5] Length = 75 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYG--TMSDIRVEINPETGDISLFRLL 66 L + + ++ E++I DV+ + D I A + + +++ + E ++ + Sbjct: 5 LKNVIETISRERNIPEDVIEKALKDGILTAVKKEFKLREKGAVKIIFDKEKDELKVLIKK 64 Query: 67 EVVEEVENYTC 77 +V VE+ T Sbjct: 65 KVTPFVEDETK 75 >gi|88602084|ref|YP_502262.1| NusA family protein [Methanospirillum hungatei JF-1] gi|88187546|gb|ABD40543.1| NusA family KH domain protein [Methanospirillum hungatei JF-1] Length = 147 Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPK 314 +G +G ++ + + K+++V ++ D F+ N +PA V + D+ ++ + V Sbjct: 49 IGKKGDNIRRL-QGVTGRKVEMVEYAEDLQEFLSNIFKPAQVIRFACDDQTKKMNIYVSD 107 Query: 315 -EQLSLAIGRRGQNVRLASQLT 335 + +AIG+ G + A L Sbjct: 108 KNDVGIAIGKGGCTIEKARILI 129 >gi|14591325|ref|NP_143403.1| transcription elongation factor NusA-like protein [Pyrococcus horikoshii OT3] gi|3257970|dbj|BAA30653.1| 145aa long hypothetical transcription termination-antitermination factor nusA [Pyrococcus horikoshii OT3] Length = 145 Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G RG V+ V + L E ID++ S + F+ N R V +V + E Sbjct: 45 MGLALGKRGINVRRVESLLGKE-IDLIEHSENPEEFIKNIYRTMGVKVKRVHITEKKDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V AIGR G N+ + QL Sbjct: 104 KVALLDVNPRDKPRAIGRGGHNINIVRQLMERH 136 >gi|330507368|ref|YP_004383796.1| NusA protein-like protein [Methanosaeta concilii GP-6] gi|328928176|gb|AEB67978.1| NusA protein-like protein [Methanosaeta concilii GP-6] Length = 143 Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G + V + R + D +GA +G +GS + V + +I+IV +S Sbjct: 22 GGMARDCVVDEENERIIFVIKKGD-----MGAAIGRKGSNINRVKKSVGK-QIEIVEYSE 75 Query: 282 DSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 D F+ N +PA + V++ V V + +AIGR G+N+ A L Sbjct: 76 DVKEFLENLFQPAAIKNVMVVNKNSKRLAYVEVANKDKGIAIGRDGRNILKAKMLAQRH 134 >gi|332157771|ref|YP_004423050.1| transcription elongation factor NusA-like protein [Pyrococcus sp. NA2] gi|331033234|gb|AEC51046.1| transcription elongation factor NusA-like protein [Pyrococcus sp. NA2] Length = 145 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G RG V+ V + E ID+V S + F+ N + V +V + E Sbjct: 45 MGLALGKRGINVRRVENLIGKE-IDLVEHSDNPEEFIKNIYKTMGVKVKRVHITEKKDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V AIGR G N+ + QL Sbjct: 104 KVALLDVNPRDKPRAIGRGGHNINIVKQLMERH 136 >gi|141393|sp|P29157|NUSA_THECE RecName: Full=NusA protein homolog gi|48144|emb|CAA47726.1| ORF-X [Thermococcus celer] gi|58411|emb|CAA42848.1| unnamed protein product [Thermococcus celer] Length = 145 Score = 47.3 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G +G+ V+ V + E I+++ S + F+ N + V +V + E Sbjct: 45 MGLALGKKGANVKRVQNMIGKE-IEVIEHSENPEEFLRNIYKSLGVKVKRVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + + + AIGR GQN+ L +L Sbjct: 104 RVALLDIGPREKPRAIGRGGQNINLVKELMERH 136 >gi|296121473|ref|YP_003629251.1| type I site-specific deoxyribonuclease, HsdR family [Planctomyces limnophilus DSM 3776] gi|296013813|gb|ADG67052.1| type I site-specific deoxyribonuclease, HsdR family [Planctomyces limnophilus DSM 3776] Length = 1065 Score = 47.3 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 30/226 (13%) Query: 8 ELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE 67 E + A A + + + V+ +S KAA + + VE E Sbjct: 730 EAIAEARAFCDSRGVSLERVIDANPESFHKAA--ELAQAAHLLVE-------------AE 774 Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPL----PPMDFGRVAVQSAKQVIIQKVR 123 VVE V++ +I L + + VV P A+++ V+ +K+R Sbjct: 775 VVEAVDDAVEKIILNDDLKKQFLFHVAQVVKLYKAILPDPRANEFAAIKTCLVVLAEKIR 834 Query: 124 EAERDRQYLEFKDKVGEI------ISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLR 177 + D+VGE+ G V ++DL D + Sbjct: 835 NLTDKANIDDLLDQVGELLDESISTVGYVIHATEETSLIDLSEVDFEALKAHFSKGRKHT 894 Query: 178 PGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 +++K+ + ++ R Q+ SR ++ F + E G+ Sbjct: 895 EAEKLKALV--SQKLTRMVQLNKSRIE---LLDKFKTLIEEYNKGM 935 >gi|298674724|ref|YP_003726474.1| NusA family KH domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287712|gb|ADI73678.1| NusA family KH domain protein [Methanohalobium evestigatum Z-7303] Length = 141 Score = 46.9 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRI 308 +GA +G G + V + +++V +S D + F+ NA P V+ V L +D Sbjct: 44 MGAAIGKNGEHINKVKENVDK-HVELVEYSEDPSEFIKNAFGPVAVSSVNLVNKDDKQYA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V V LAIG G+N+ + Sbjct: 103 YVQVSNNSKGLAIGSNGKNIDKVKMIANRH 132 >gi|307353872|ref|YP_003894923.1| NusA family KH domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157105|gb|ADN36485.1| NusA family KH domain protein [Methanoplanus petrolearius DSM 11571] Length = 156 Score = 46.9 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG---RIEVI 311 +G G ++ EL KI++V +S D F+ N PA V V + E+ V Sbjct: 50 IGKSGVSIKKASDELGK-KIEVVEFSNDPVQFIKNCFLPARVISVDIRENAEGEFEAFVD 108 Query: 312 VPKEQLSLAIGRRGQNVRLASQL 334 V +E + +AIG+ G+N+ A++L Sbjct: 109 VEEEDMGIAIGKGGKNIFKANKL 131 >gi|147921531|ref|YP_684653.1| transcription termination factor NusA [uncultured methanogenic archaeon RC-I] gi|110620049|emb|CAJ35327.1| transcription termination factor NusA [uncultured methanogenic archaeon RC-I] Length = 146 Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDVGRI 308 +G +G G+ + V ++ I+++ +S D F+ N +PA V V + D Sbjct: 46 MGLAIGKNGNNINRVKKQIGR-LIEVIEYSEDPKEFIRNLFQPAAVKNVTISTRGDRSIA 104 Query: 309 EVIVPKEQLSLAIGRRGQNV 328 V + + LAIG+ G+N+ Sbjct: 105 IVDIATKDKGLAIGKNGRNI 124 >gi|15621245|dbj|BAB65240.1| 130aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 130 Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308 +G +G GS V+ + L + I+IV +S + V N + PA V V + + + Sbjct: 33 MGTAIGKNGSNVKRLEK-LIGKSIEIVGYSDNLEDLVRNLMAPAKVRSVKVVQSNSKKTV 91 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + LAIG+ G+NV A + +DI Sbjct: 92 YINVDPQDKGLAIGKNGRNVTRAKLILKRYMDI 124 >gi|170591398|ref|XP_001900457.1| KH domain containing protein [Brugia malayi] gi|158592069|gb|EDP30671.1| KH domain containing protein [Brugia malayi] Length = 634 Score = 46.9 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 12/163 (7%) Query: 284 ATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIIT 343 A +V N + A+ + V + + VP + IG +G ++R A +LTG + I Sbjct: 355 AQYVRNTVGTAVAITGQ--QQVRTVHMWVPNNMVGALIGAKGAHIRSAIRLTGAQLRIEG 412 Query: 344 EEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDE 403 + ++ + + V E++ LV A +++E+ E + Sbjct: 413 GGTNKDKKESRGEGNNEKSDKDNAVTELVKKELVE---------ADERVNELDKNENNSD 463 Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 E + E + ++ K +++ E L +I G D + Sbjct: 464 EKQNGKKEENVEKVASPKLSKDKD-KDVHAEERLVTITGNDPQ 505 >gi|325960112|ref|YP_004291578.1| NusA family KH domain-containing protein [Methanobacterium sp. AL-21] gi|325331544|gb|ADZ10606.1| NusA family KH domain protein [Methanobacterium sp. AL-21] Length = 143 Score = 46.5 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%) Query: 218 EIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIV 277 E G + + + + V D +G +G RGS V V + ++++ Sbjct: 17 ESMTGAMVKDLLVDEENGKLTFLVKKGD-----MGLAIGKRGSTVTKVQKTVDK-GVEVI 70 Query: 278 VWSPDSATFVINALRPAIVTKVVLDEDV---GRIEVIVPKEQLSLAIGRRGQNVRLASQL 334 S D F+ N + PA + + + + + AIG+ GQN+ A L Sbjct: 71 EHSDDPVEFITNLMAPAKLRSIRILQKENGEKIATIEADSRNKRTAIGKAGQNIERARLL 130 >gi|161751102|ref|NP_376131.2| transcription elongation factor NusA-like protein [Sulfolobus tokodaii str. 7] Length = 143 Score = 46.1 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308 +G +G GS V+ + L + I+IV +S + V N + PA V V + + + Sbjct: 46 MGTAIGKNGSNVKRLEK-LIGKSIEIVGYSDNLEDLVRNLMAPAKVRSVKVVQSNSKKTV 104 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + LAIG+ G+NV A + +DI Sbjct: 105 YINVDPQDKGLAIGKNGRNVTRAKLILKRYMDI 137 >gi|207109128|ref|ZP_03243290.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 129 Score = 46.1 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 22/116 (18%) Query: 267 TELRDEKIDIVVWSPDSATFVINALRPAIVTK----------------------VVLDED 304 EL E ID + +S ++ AL PA + +++ Sbjct: 1 NELNKENIDCIEYSNVPEIYITLALAPAKILSVEIKKIPIEELNAEEKESIQERFIVNNH 60 Query: 305 VGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 + + +V + + S AIG+ G NV LAS LTG+ I+ T N + + + TQ Sbjct: 61 LQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGYHIEFETIPSVKENAENESEKETQ 116 >gi|126178254|ref|YP_001046219.1| NusA family protein [Methanoculleus marisnigri JR1] gi|126178267|ref|YP_001046232.1| NusA family protein [Methanoculleus marisnigri JR1] gi|125861048|gb|ABN56237.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] gi|125861061|gb|ABN56250.1| NusA family KH domain protein [Methanoculleus marisnigri JR1] Length = 149 Score = 46.1 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307 +G +G GS ++ +++ ++I++V +S D + F+ N PA VT + D ED Sbjct: 46 MGLAIGKSGSSIKK-ASDVMGKRIEVVEYSADPSQFLRNCFLPAQVTGIDFDTDEEDQQI 104 Query: 308 IEVIVPKEQLSLAIGRRGQNV 328 + V E LAIG+ G+N+ Sbjct: 105 ALIDVRDEDRGLAIGKAGKNI 125 >gi|159040907|ref|YP_001540159.1| transcription elongation factor NusA-like protein [Caldivirga maquilingensis IC-167] gi|157919742|gb|ABW01169.1| NusA family KH domain protein [Caldivirga maquilingensis IC-167] Length = 148 Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD-- 302 D + P+ VG G V+ + L + ++IV + D + NAL PA V + ++ Sbjct: 46 DKNFAPLA--VGKGGINVKKLKNLLGKD-VEIVEYGDDPEELLRNALYPAKVVNITINKL 102 Query: 303 -EDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + V + + +A+G+ +N++ A+ L DI Sbjct: 103 PNNGKVAIIRVEEGEKGIALGKYHRNLKRAALLAKRYFDI 142 >gi|219852753|ref|YP_002467185.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c] gi|219547012|gb|ACL17462.1| NusA family KH domain protein [Methanosphaerula palustris E1-9c] Length = 148 Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 +G +G +G+ ++ +++ ++I++V +S D F+ N PA V V +E Sbjct: 46 MGLAIGKKGASIKK-ASDVMGKRIEVVEYSDDPEQFIKNCFLPAQVVSVEFEESEEGPVA 104 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V V +E +AIG+ G+N+ A +L+ Sbjct: 105 HVEVREEDRGIAIGKEGKNIFKAKRLSQRQ 134 >gi|312075410|ref|XP_003140404.1| KH domain-containing protein [Loa loa] gi|307764432|gb|EFO23666.1| KH domain-containing protein [Loa loa] Length = 642 Score = 45.0 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%) Query: 283 SATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDII 342 A +V N + T + V + + VP + IG +G ++R A +LTG + I Sbjct: 343 PAHYVRNTVG--TTTTAASQQQVRTVHMWVPNNMVGALIGAKGAHIRSAIRLTGAQLRIE 400 Query: 343 TEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFD 402 + ++ +E E + A +++E E Sbjct: 401 GGGMNKDKKENRGE----------GNNEKSDKENSTESVKEETVAANERVNEPGKDENNS 450 Query: 403 EETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 +E +E + E + K +++ E L +I G D + Sbjct: 451 DEKQIEKKEENVEKTTSPKLAKDKD-KDVHAEERLVTIIGNDPQ 493 >gi|303244441|ref|ZP_07330776.1| NusA family KH domain protein [Methanothermococcus okinawensis IH1] gi|302485139|gb|EFL48068.1| NusA family KH domain protein [Methanothermococcus okinawensis IH1] Length = 188 Score = 44.6 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 5/149 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 +GA +G G V+ + + KID++ +S D FV N P + V + + D + Sbjct: 43 IGAAIGKGGENVKNAMEKFGK-KIDVIEYSSDLKKFVRNVFAPLKLEDVWIKKFGDDVVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 + V + IG RG+N+ A + G DI + S R+ + + F + Sbjct: 102 YIRVHPKLRRTIIGNRGKNIDRAVNIVGRLSDIKNIKVVSEPRKNPKGKYHKKFEKT--E 159 Query: 369 DEIIAHLLVAEGFADVEELACVKISEIAS 397 + + + E+L +SE Sbjct: 160 KPKTENKVAENKNIEAEKLKEEVVSESNE 188 >gi|307595334|ref|YP_003901651.1| NusA family KH domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550535|gb|ADN50600.1| NusA family KH domain protein [Vulcanisaeta distributa DSM 14429] Length = 150 Score = 44.6 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--- 301 D + P+ VG G ++ + EL + +++V + + N+L PA V V + Sbjct: 42 DKNFAPLA--VGKNGINIRKL-KELTGKDVEVVEYGETPEELIKNSLYPARVISVKITKL 98 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V E ++AIG++G+N+ A L DI Sbjct: 99 PNNGSIAIATVHNEDKAIAIGKQGRNINRAKLLAKRYFDI 138 >gi|229579770|ref|YP_002838169.1| KH type 2 domain protein [Sulfolobus islandicus Y.G.57.14] gi|229581561|ref|YP_002839960.1| NusA family KH domain protein [Sulfolobus islandicus Y.N.15.51] gi|238620367|ref|YP_002915193.1| KH type 2 domain protein [Sulfolobus islandicus M.16.4] gi|284998391|ref|YP_003420159.1| KH, type 2 domain protein [Sulfolobus islandicus L.D.8.5] gi|228010485|gb|ACP46247.1| KH type 2 domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012277|gb|ACP48038.1| NusA family KH domain protein [Sulfolobus islandicus Y.N.15.51] gi|238381437|gb|ACR42525.1| KH type 2 domain protein [Sulfolobus islandicus M.16.4] gi|284446287|gb|ADB87789.1| KH, type 2 domain protein [Sulfolobus islandicus L.D.8.5] Length = 98 Score = 44.6 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 +G +G G V+ + + + I++V +S + V N + PA V V + + Sbjct: 1 MGVAIGKSGINVKKLRKIIGKD-IELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSV 59 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + + LAIG+ G+NV A + +DI Sbjct: 60 YISIDPQDKGLAIGKNGRNVARAKLILKRYMDI 92 >gi|323475230|gb|ADX85836.1| KH type 2 domain protein [Sulfolobus islandicus REY15A] gi|323477962|gb|ADX83200.1| KH type 2 domain protein [Sulfolobus islandicus HVE10/4] Length = 98 Score = 44.2 bits (103), Expect = 0.047, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE--DVGRI 308 +G +G G V+ + + + I++V +S + V N + PA V V + + Sbjct: 1 MGVAIGKSGINVKKLRKIIGKD-IELVAYSDNLEELVKNLMSPARVRSVKVVNTSSKKSV 59 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + + + LAIG+ G+NV A + +DI Sbjct: 60 YINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 92 >gi|297619372|ref|YP_003707477.1| DNA repair and recombination protein RadA [Methanococcus voltae A3] gi|297378349|gb|ADI36504.1| DNA repair and recombination protein RadA [Methanococcus voltae A3] Length = 322 Score = 44.2 bits (103), Expect = 0.047, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 17/74 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +S+ L +PG+ L E G +A +V +L G Sbjct: 1 MSDNLTDLPGVGPSTAEKLAEGGYIDFMKIATATVGELTDIE-----------------G 43 Query: 493 TPKDQVESMIIHAR 506 + MI+ AR Sbjct: 44 ISEKAAAKMIMGAR 57 >gi|156937041|ref|YP_001434837.1| NusA family protein [Ignicoccus hospitalis KIN4/I] gi|156566025|gb|ABU81430.1| NusA family KH domain protein [Ignicoccus hospitalis KIN4/I] Length = 143 Score = 44.2 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD--EDVGRI 308 VG +G RG V+ + E+ ++I+IV +S + V NAL PA V V + + Sbjct: 46 VGRAIGKRGFMVRKL-KEILKKQIEIVPYSDNIEEMVKNALAPARVIGVRVSKTPKGKVV 104 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + +AIG+ G+NV A + D+ Sbjct: 105 YARVNPKDKGVAIGKEGRNVAKARLILKRHFDV 137 >gi|76800714|ref|YP_325722.1| transcription elongation factor NusA-like protein [Natronomonas pharaonis DSM 2160] gi|76556579|emb|CAI48150.1| transcription elongation factor nusA [Natronomonas pharaonis DSM 2160] Length = 141 Score = 44.2 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVP 313 +G G V V +++ + + ++ + +A FV NAL PA V V + E D V Sbjct: 49 IGPGGDHVATVESKVGRD-VTVIEGAETAADFVANALAPAAVYNVTISENDTTVAYAEVD 107 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +AIG G+N+ LA +L DI Sbjct: 108 ENDRGVAIGADGRNIDLARRLADRHFDI 135 >gi|196230414|ref|ZP_03129276.1| amino acid adenylation domain protein [Chthoniobacter flavus Ellin428] gi|196225344|gb|EDY19852.1| amino acid adenylation domain protein [Chthoniobacter flavus Ellin428] Length = 619 Score = 44.2 bits (103), Expect = 0.052, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%) Query: 29 SVMADSIQKAAR----SLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVA 84 M +++KAAR L G D I+P + ++ L VVE VEN +I ++A Sbjct: 148 EAMLAALRKAARGATGELVGAARDSGAGIDPTSDEVKLSAKFRVVETVENEENEIGFELA 207 Query: 85 RDRDPSIDIGGVVSDPLPPMDFGR----VAVQSAKQV 117 I +G + L P +FGR +A ++ K+ Sbjct: 208 TTLKADIQVGEDLELLLSPQEFGRVLGLIAAEAMKRR 244 >gi|254169028|ref|ZP_04875866.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|254169225|ref|ZP_04876059.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|289596762|ref|YP_003483458.1| NusA family KH domain protein [Aciduliprofundum boonei T469] gi|197621821|gb|EDY34402.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|197621998|gb|EDY34575.1| NusA family KH domain protein, archaeal [Aciduliprofundum boonei T469] gi|289534549|gb|ADD08896.1| NusA family KH domain protein [Aciduliprofundum boonei T469] Length = 141 Score = 44.2 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RIEVIVPKE 315 GS++Q V ++ + +V +SPD F N V + ++ I V V Sbjct: 51 NGSKIQTVRNLIKK-NVMVVEYSPDIVVFTKNIFHRFHVKNIKVENVDNQFSITVFVDPR 109 Query: 316 QLSLAIGRRGQNVRLASQLTGWTI 339 + AIG+ G+N++LA ++ Sbjct: 110 DKARAIGKEGRNLKLAKEIISRHF 133 >gi|325969569|ref|YP_004245761.1| NusA family KH domain protein [Vulcanisaeta moutnovskia 768-28] gi|323708772|gb|ADY02259.1| NusA family KH domain protein [Vulcanisaeta moutnovskia 768-28] Length = 150 Score = 43.8 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL--- 301 D + P+ VG G ++ + EL + +++V + + N+L PA V + + Sbjct: 42 DKNFAPLA--VGKNGINIRKL-KELTGKDVEVVEYGETPEELIKNSLYPARVLSIKITKL 98 Query: 302 DEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V E ++AIG++G+N+ A L DI Sbjct: 99 PNNGSIAIATVHNEDKAIAIGKQGRNINRAKLLAKRYFDI 138 >gi|18977932|ref|NP_579289.1| transcription elongation factor NusA-like protein [Pyrococcus furiosus DSM 3638] gi|18893702|gb|AAL81684.1| transcription termination-antitermination factor nusa [Pyrococcus furiosus DSM 3638] Length = 145 Score = 43.8 bits (102), Expect = 0.065, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP--AIVTKVVLDED---V 305 +G +G G V+ + + E ID+V S + F+ N R V KV + E Sbjct: 45 MGLALGRGGINVRRIEGLIGKE-IDLVEHSENPEEFIKNIYRTMGVKVKKVHITEKRDGK 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 + V AIGR G+N+ + QL Sbjct: 104 KVALLDVNPRDKPRAIGRGGRNINIVKQLMERH 136 >gi|84490157|ref|YP_448389.1| transcription elongation factor NusA-like protein [Methanosphaera stadtmanae DSM 3091] gi|84373476|gb|ABC57746.1| NusA [Methanosphaera stadtmanae DSM 3091] Length = 143 Score = 43.8 bits (102), Expect = 0.070, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED---VGR 307 +G +G RGS + + ++ I+I+ S D F+ N L A V + + Sbjct: 45 MGLAIGKRGSTIAKMQNKVDK-SIEIIEHSDDPGEFIKNLLSVAKVNSIEFSTNAKGNKI 103 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V + IG+ GQN+R A Q DI Sbjct: 104 ATLDVDSKTKRSTIGKNGQNIRRARQFAKRQFDI 137 >gi|303244732|ref|ZP_07331062.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] gi|302484866|gb|EFL47800.1| DNA repair and recombination protein RadA [Methanothermococcus okinawensis IH1] Length = 322 Score = 43.8 bits (102), Expect = 0.072, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 17/75 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +++ L +PG+ L E G +A ++ +L G Sbjct: 1 MADNLTDLPGVGPSTAEKLIEAGYIDFMKIATATIGELTDIE-----------------G 43 Query: 493 TPKDQVESMIIHARY 507 + MI+ AR Sbjct: 44 ISEKAAAKMIMGARE 58 >gi|119719200|ref|YP_919695.1| NusA family protein [Thermofilum pendens Hrk 5] gi|119524320|gb|ABL77692.1| NusA family KH domain protein [Thermofilum pendens Hrk 5] Length = 149 Score = 43.8 bits (102), Expect = 0.073, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%) Query: 245 DSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED 304 D P+ VG GS+++ + LR + +++V FV + PA V +V + E+ Sbjct: 45 DKGFAPLA--VGKNGSKIRMIKELLRKD-VEVVEDGSSLEDFVKSVFFPARVVEVKVREE 101 Query: 305 VGRIEV--IVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 R V +VP +QL LAIGR G+NV+ A L Sbjct: 102 NNRKVVIAVVPPDQLGLAIGRNGRNVQRAKILLKRYYGA 140 >gi|118575641|ref|YP_875384.1| transcription elongation factor [Cenarchaeum symbiosum A] gi|118194162|gb|ABK77080.1| transcription elongation factor [Cenarchaeum symbiosum A] Length = 154 Score = 43.4 bits (101), Expect = 0.088, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDV 305 + +G +G GS ++++ ++ +++V + D A F+ + L +V++V L+ + Sbjct: 45 NKMGLAIGRGGSNIKSLQNIIKK-NVELVEYHEDPAEFLKHMLDSKLVSEVKLNKRSDGT 103 Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + VIV ++ + IGR G+NV A L +I Sbjct: 104 TQAIVIVDPQKKGIVIGRDGRNVEKARMLAKRYFEI 139 >gi|88603707|ref|YP_503885.1| ski2-like helicase [Methanospirillum hungatei JF-1] gi|88189169|gb|ABD42166.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei JF-1] Length = 799 Score = 43.4 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 9/105 (8%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASI--EGFDEETAVEIQGRAREYLEGIDITL 424 N+ + A L G+ D E +A +S IA I EG + EI G R + D Sbjct: 650 NIGRVRARTLYNAGYPDPEAVARAGLSTIARIIGEGIARQVIDEITGVKRSGIHSSDDDY 709 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 Q+K EL L IPGI K+ L GI T+ DL + D+ Sbjct: 710 QQKTPEL-----LTDIPGIGKKMAEKLQNAGIITVSDL--LTADE 747 >gi|110669266|ref|YP_659077.1| transcription elongation factor NusA-like protein [Haloquadratum walsbyi DSM 16790] gi|109627013|emb|CAJ53489.1| transcription elongation factor nusA [Haloquadratum walsbyi DSM 16790] Length = 140 Score = 43.4 bits (101), Expect = 0.091, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRI 308 +G +G G V+AV ++ +++V + + FV NAL PA V V + E Sbjct: 43 MGTAIGPGGKHVRAVEDDIGT-TVELVEDAETARAFVENALAPAAVRHVTISEQGGECVA 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V +P +AIG G+N+ A +L +I Sbjct: 102 YVEIPDPDRGIAIGADGKNIHTARKLVRRHYEI 134 >gi|294495213|ref|YP_003541706.1| NusA family KH domain protein [Methanohalophilus mahii DSM 5219] gi|292666212|gb|ADE36061.1| NusA family KH domain protein [Methanohalophilus mahii DSM 5219] Length = 141 Score = 43.4 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRI 308 +GA +G G + + +D++ +S D TF+ NA V + + Sbjct: 44 MGAAIGKHGDNINRFKKAVDK-HVDLIEYSDDPITFIKNAFGTIPTKSVEISDKNGKKVA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 V V LAIG+ G+N+ ++ Sbjct: 103 YVEVSSMNKGLAIGKSGRNIDKIKRIVNRH 132 >gi|13878668|sp|O73948|RADA_METVO RecName: Full=DNA repair and recombination protein radA gi|3219351|gb|AAC23499.1| RadA [Methanococcus voltae PS] Length = 322 Score = 43.4 bits (101), Expect = 0.093, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 17/74 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +S+ L +PG+ L E G +A +V +L G Sbjct: 1 MSDNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE-----------------G 43 Query: 493 TPKDQVESMIIHAR 506 + MI+ AR Sbjct: 44 ISEKAAAKMIMGAR 57 >gi|15897168|ref|NP_341773.1| transcription elongation factor NusA [Sulfolobus solfataricus P2] gi|13813357|gb|AAK40563.1| Transcription termination factor nusA homolog, putative (nusA) [Sulfolobus solfataricus P2] Length = 124 Score = 43.4 bits (101), Expect = 0.097, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 +R V S D +G +G G V+ + + + I++V +S + V N + P Sbjct: 15 NNRIIFLVDSKD-----MGVAIGKSGINVKKLKKIIGKD-IELVAYSDNLEELVKNLMSP 68 Query: 294 AIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V + + + + + LAIG+ G+NV A + +DI Sbjct: 69 ARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 118 >gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis JCM 11548] gi|166218766|sp|A3MXX9|RADA_PYRCJ RecName: Full=DNA repair and recombination protein radA gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis JCM 11548] Length = 332 Score = 43.4 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 18/93 (19%) Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + Q ++ + GI L E G T+ D+A SV +L Sbjct: 7 KADAEVAQAATVAASPDIDVEELEGIGRVTGAKLKEKGYYTVRDVAYASVKELAEIVG-- 64 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 +++ + ++ AR +G Sbjct: 65 ----------------SEERAQQIVEAARKMLG 81 >gi|167043882|gb|ABZ08571.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_APKG3E18] Length = 154 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307 +G +G GS ++++ L+ + +++V + D F+ N L P V +V LD + + Sbjct: 47 MGLAIGKGGSTIKSLQNILKRD-VELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +IV + L +GR G+N A DI Sbjct: 106 ATIIVDHGKKGLVVGRDGRNAEKARLFAKRYFDI 139 >gi|150402535|ref|YP_001329829.1| transcription elongation factor NusA-like protein [Methanococcus maripaludis C7] gi|150033565|gb|ABR65678.1| NusA family KH domain protein [Methanococcus maripaludis C7] Length = 173 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308 +GA +G G V++ + KID++ +S D F+ N P + D + Sbjct: 43 IGAAIGKGGENVKSATEKFGK-KIDLIEYSEDVKQFIKNIFAPVELEDVWTKKFSDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V V IG +G+N+ A + G + + + R+ + + Q + Sbjct: 102 YVRVHPRLRRAVIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDNDKKPKQDEIPEKAA 161 Query: 369 DEIIA 373 + Sbjct: 162 ESSTN 166 >gi|34558836|gb|AAQ75180.1| 30S ribosomal protein S1 [Alvinella pompejana epibiont 7G3] Length = 556 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 29/204 (14%) Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIR---VEINPETGDISLFRLLEVVEEVENYTCQIS 80 DV M ++++ + + V+IN + VV+ +S Sbjct: 11 EDVDFEAM---LEESFKKRDTNNDLVEGTIVKINEAENQV-------VVDIGRKNEAIMS 60 Query: 81 LKVARDRDPSI--DIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKV 138 L RD D +I +IG + + + RV++ + E E+ D+ Sbjct: 61 LDQIRDEDGNIMFNIGDTIPVVITKRNGERVSISYELAEKRIALSE-----FIDEYDDEE 115 Query: 139 GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP-GDRVKSYIYDVRREQRGPQ 197 I+ G + R G +VD+ + + + + + P G RVK+ I V ++++ Sbjct: 116 EYIVEGVIVRKNRGGFVVDVSGLEFFMPKTLSYISPKINPIGKRVKALIVKVDKDKQS-- 173 Query: 198 VLLSRTHPQFMVKLFHMEVPEIYN 221 V++SR L E EI Sbjct: 174 VIVSR------KDLIEREKKEIQE 191 >gi|284174414|ref|ZP_06388383.1| transcription elongation factor NusA [Sulfolobus solfataricus 98/2] Length = 119 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 +R V S D +G +G G V+ + + + I++V +S + V N + P Sbjct: 10 NNRIIFLVDSKD-----MGVAIGKSGINVKKLKKIIGKD-IELVAYSDNLEELVKNLMSP 63 Query: 294 AIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V + + + + + LAIG+ G+NV A + +DI Sbjct: 64 ARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 113 >gi|134045257|ref|YP_001096743.1| transcription elongation factor NusA-like protein [Methanococcus maripaludis C5] gi|132662882|gb|ABO34528.1| NusA family KH domain protein [Methanococcus maripaludis C5] Length = 173 Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308 +GA +G G V+ + KID++ +S D+ F+ N P + D + Sbjct: 43 IGAAIGKGGENVRNATEKFGK-KIDLIEYSEDAKQFIKNIFAPIELEDVWTKKFSDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V V IG +G+N+ A + G + + + ++ + + Q + Sbjct: 102 YVRVHPRLRRAVIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLKKDNDKKPKQEEIPEKAA 161 Query: 369 DEIIA 373 + Sbjct: 162 ESSTN 166 >gi|302348977|ref|YP_003816615.1| transcription elongation factor NusA-like protein [Acidilobus saccharovorans 345-15] gi|302329389|gb|ADL19584.1| transcription elongation factor NusA-like protein [Acidilobus saccharovorans 345-15] Length = 150 Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%) Query: 222 GIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSP 281 G + +A+ G+R V +D +G +G G V+ + L +++V +S Sbjct: 29 GAMVYRAIEDAEGNRIFYLVDKND-----IGKAIGKDGRNVKTLSRILNK-NVEVVEYSA 82 Query: 282 DSATFVINALRPAIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTI 339 D + V N V KV + + D + V V ++ AIGR G+NV+ A + Sbjct: 83 DLESMVRNLFPGVTVLKVDVVDKNDGKVVYVKVKDDEKGKAIGRDGRNVKRARIILTKLF 142 Query: 340 DI 341 ++ Sbjct: 143 NV 144 >gi|268323375|emb|CBH36963.1| putative NusA protein homolog [uncultured archaeon] Length = 139 Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVL---DEDVGR 307 +G +G GS + V +R + I++V S D+ F+ N RPA + V L D Sbjct: 41 MGLAIGKGGSNITKVKNMVRKD-IEVVEHSTDAKEFIENLFRPAEIKSVELLTDDNGKSC 99 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V V +Q +AIG+ G+ ++ L + I Sbjct: 100 AYVAVLTKQKGIAIGKNGERIKKVKLLVKRNLGI 133 >gi|76803074|ref|YP_331169.1| 50S ribosomal protein L32e [Natronomonas pharaonis DSM 2160] gi|76558939|emb|CAI50535.1| ribosomal protein L32.eR [Natronomonas pharaonis DSM 2160] Length = 240 Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 EEL I G+ L E GI+T++DL S D+L + + L Sbjct: 10 EELTDISGVGEAKAETLREAGIETVDDLREKSQDELADIDGVGNALAARIKADVGDLEVD 69 Query: 495 KDQ 497 + Sbjct: 70 AET 72 >gi|315425376|dbj|BAJ47042.1| N utilization substance protein A [Candidatus Caldiarchaeum subterraneum] gi|315426557|dbj|BAJ48187.1| N utilization substance protein A [Candidatus Caldiarchaeum subterraneum] gi|315426615|dbj|BAJ48243.1| N utilization substance protein A [Candidatus Caldiarchaeum subterraneum] Length = 144 Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 249 DPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--- 305 D A +G G++++ +V R +I +V +S D++ F+ N L PA V + V + Sbjct: 44 DLKKALMG-HGAKIKELVRIFRK-RIKVVEYSTDASVFIKNLLYPAEVIEPVRVAEKPDG 101 Query: 306 -GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V V +AIG+ G+N+ LA L +I Sbjct: 102 KKIMVVNVNPRDKGVAIGKDGKNINLARLLVKRHFNI 138 >gi|257051865|ref|YP_003129698.1| transcription elongation factor NusA-like protein [Halorhabdus utahensis DSM 12940] gi|256690628|gb|ACV10965.1| NusA family KH domain protein [Halorhabdus utahensis DSM 12940] Length = 142 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDED--VGRI 308 VG +G G V + L + + +V +P FV NAL PA V V ++E Sbjct: 45 VGKAIGRDGETVARIEDRLGRD-VTLVEDAPTPEGFVANALAPAAVYDVTIEERDGERVA 103 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V + AIG G+ + LA +L G +I Sbjct: 104 FADVDEADTGAAIGTEGRTIELARRLAGRHFEI 136 >gi|45358929|ref|NP_988486.1| transcription elongation factor NusA [Methanococcus maripaludis S2] gi|45047795|emb|CAF30922.1| KH domain:KH domain, type 1 [Methanococcus maripaludis S2] Length = 173 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 3/125 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308 +GA +G G V+ + KID++ +S D F+ N P V D + Sbjct: 43 IGAAIGKGGENVRNATEKFGK-KIDLIEYSEDVKQFIKNIFAPIEVEDVWTKKFGDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 + V IG +G+N+ A + G + + + R+ + + Q + Sbjct: 102 YIRVHPRFRRAIIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDNDKKPKQEEVPEKAA 161 Query: 369 DEIIA 373 + Sbjct: 162 ESSKN 166 >gi|163753432|ref|ZP_02160556.1| 50S ribosomal protein L21 [Kordia algicida OT-1] gi|161327164|gb|EDP98489.1| 50S ribosomal protein L21 [Kordia algicida OT-1] Length = 215 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%) Query: 395 IASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 + +I + A + A++ + K + G +++L I GI KI L E Sbjct: 98 VENIVASGAKKAAPKKEEAKKEVAKPAEKPAAK-KATGKADDLKKIEGIGPKIASTLVEA 156 Query: 455 GIKTMEDLAGCSVDDLLGWSENKGGNIEKF 484 GI T A + + SE G Sbjct: 157 GIAT---FAELAKTEPAKISEIISGVRGNH 183 >gi|189237154|ref|XP_973939.2| PREDICTED: similar to igf2 mRNA binding protein, putative [Tribolium castaneum] Length = 1116 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 20/113 (17%) Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E ++E+ +V SP+ A ++I Sbjct: 359 NAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPEAQWKAQYLI 418 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ +E++VP Q+ IG+ GQNVR ++TG I + Sbjct: 419 FEKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGSVIKL 471 >gi|261601835|gb|ACX91438.1| NusA family KH domain protein [Sulfolobus solfataricus 98/2] Length = 143 Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 234 GSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRP 293 +R V S D +G +G G V+ + + + I++V +S + V N + P Sbjct: 34 NNRIIFLVDSKD-----MGVAIGKSGINVKKLKKIIGKD-IELVAYSDNLEELVKNLMSP 87 Query: 294 AIVTKVVLDE--DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 A V V + + + + + LAIG+ G+NV A + +DI Sbjct: 88 ARVRSVKVVNTSSKKSVYINIDPQDKGLAIGKNGRNVARAKLILKRYMDI 137 >gi|284163650|ref|YP_003401929.1| NusA family KH domain protein [Haloterrigena turkmenica DSM 5511] gi|284013305|gb|ADB59256.1| NusA family KH domain protein [Haloterrigena turkmenica DSM 5511] Length = 146 Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVP 313 +G G V+ + + +V + D FV NAL PA V V + E D V V Sbjct: 54 IGPEGRTVRQYEERVGK-PVRLVEDADDPEAFVANALSPAAVYNVTISENDDTVAYVEVA 112 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 E +AIG G+ + A L I Sbjct: 113 DEDRGVAIGSNGRTIEAARTLAQRHFGI 140 >gi|159905690|ref|YP_001549352.1| transcription elongation factor NusA-like protein [Methanococcus maripaludis C6] gi|159887183|gb|ABX02120.1| NusA family KH domain protein [Methanococcus maripaludis C6] Length = 173 Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308 +GA +G G V++ + KID++ +S D F+ N P + D + Sbjct: 43 IGAAIGKGGENVKSATEKFGK-KIDLIEYSEDVKQFIKNIFAPIELEDVWTKKFSDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V V IG +G+N+ A + G + + + R+ + + Q + Sbjct: 102 YVRVHPRLRRAVIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDNDKKPKQEEIPEKAA 161 Query: 369 DEIIA 373 + Sbjct: 162 ESSKN 166 >gi|150399427|ref|YP_001323194.1| transcription elongation factor NusA-like protein [Methanococcus vannielii SB] gi|141390|sp|P14026|NUSA_METVS RecName: Full=NusA protein homolog gi|44783|emb|CAA34088.1| unnamed protein product [Methanococcus vannielii] gi|150012130|gb|ABR54582.1| NusA family KH domain protein [Methanococcus vannielii SB] Length = 173 Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 +GA +G G V+ + KID++ +S D F+ N P + V + + + Sbjct: 43 IGAAIGKGGENVKNATDKFGK-KIDLIEYSEDLKQFIKNIFAPIELEDVWVKKFGNDLVV 101 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 V V IG +G+N+ A + G + + + R+ N + + Sbjct: 102 YVRVHPRLRRAIIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDADNRPKKDEIPEKAA 161 Query: 369 DEIIA 373 + Sbjct: 162 ESSEN 166 >gi|167042228|gb|ABZ06960.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_ANIW93I24] Length = 154 Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307 +G +G GS ++++ L+ +++V + D F+ N L P V +V LD + + Sbjct: 47 MGLAIGKGGSNIKSLQNILKR-NVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +IV + L +GR G+N A +I Sbjct: 106 ATIIVDHGKKGLVVGRDGRNAEKARLFAKRYFNI 139 >gi|270007202|gb|EFA03650.1| hypothetical protein TcasGA2_TC013744 [Tribolium castaneum] Length = 710 Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 20/113 (17%) Query: 249 DPVGACVGMRGSRVQAVV-----------------TELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E ++E+ +V SP+ A ++I Sbjct: 510 NAVGAIIGTKGSHIRNIIRFSGASVKIAPIDETKPQETQNERRVTIVGSPEAQWKAQYLI 569 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ +E++VP Q+ IG+ GQNVR ++TG I + Sbjct: 570 FEKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGSVIKL 622 >gi|154151612|ref|YP_001405230.1| NusA family protein [Candidatus Methanoregula boonei 6A8] gi|154000164|gb|ABS56587.1| NusA family KH domain protein [Methanoregula boonei 6A8] Length = 147 Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +G +G +G ++ + L +I++V ++ D F+ N +PA V + + G + V Sbjct: 45 MGLAIGKKGENIKRLQNVLGR-RIEMVEYAEDPVLFITNIFKPAEVIGIERGAEEGPVNV 103 Query: 311 IV-PKEQLSLAIGRRGQNVRLASQLT 335 +V K L +AIG+ G N+ A L Sbjct: 104 LVNKKSDLGIAIGKAGCNIEKARILC 129 >gi|313679748|ref|YP_004057487.1| hypothetical protein Ocepr_0857 [Oceanithermus profundus DSM 14977] gi|313152463|gb|ADR36314.1| hypothetical protein Ocepr_0857 [Oceanithermus profundus DSM 14977] Length = 192 Score = 42.3 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%) Query: 330 LASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELAC 389 L L GW ++ + + R + + Q ++ DE L+ +EE A Sbjct: 7 LIGFLIGWVVEWLIDVAYWRPRLRSARAELETCRQQLD-DERERAKLLQAKIEALEEEAK 65 Query: 390 VKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKV 449 + + +EG + + + A L + + ++L I GI KI+ Sbjct: 66 GLRARLQRLEG-ERDRYRNERDAALAELRSFATEADRPGEAVSPGDDLKRIEGIGPKIER 124 Query: 450 ALGENGIKTMEDLA 463 L G++T E+LA Sbjct: 125 LLQRAGVRTFEELA 138 >gi|300779764|ref|ZP_07089620.1| chaperonin GroEL [Corynebacterium genitalium ATCC 33030] gi|300533874|gb|EFK54933.1| chaperonin GroEL [Corynebacterium genitalium ATCC 33030] Length = 535 Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 12/131 (9%) Query: 374 HLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGV 433 LV EG +V A I I E+ E++ RA + +I + Sbjct: 96 QALVNEGLRNVAAGAN-PIELNKGISAATEKVVEELKARATDVSSSEEIANVATVSSRDP 154 Query: 434 SEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGT 493 + + S +G++G+ T+E+ S+D + +E GFLS Sbjct: 155 E-----VGEMVSGAMDKVGKDGVLTVEE--SQSIDSYVDVTEGISFEK----GFLSPYFM 203 Query: 494 PKDQVESMIIH 504 + ++ Sbjct: 204 TDPEAGQAVLE 214 >gi|109157521|pdb|2F1H|A Chain A, Recombinase In Complex With Amp-Pnp And Potassium gi|109157522|pdb|2F1I|A Chain A, Recombinase In Complex With Amp-Pnp gi|109157523|pdb|2F1J|A Chain A, Recombinase In Complex With Adp Length = 322 Score = 42.3 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 17/72 (23%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L +PG+ L E G +A +V +L G Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE-----------------GIS 45 Query: 495 KDQVESMIIHAR 506 + MI+ AR Sbjct: 46 EKAAAKMIMGAR 57 >gi|52695616|pdb|1T4G|A Chain A, Atpase In Complex With Amp-Pnp gi|56967254|pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium Co-F gi|88193103|pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp gi|88193104|pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low Concentration Of K+ gi|88193105|pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High Concentration Of K+ gi|114793501|pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0 gi|118138042|pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium gi|257097225|pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate Length = 322 Score = 41.9 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 17/72 (23%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L +PG+ L E G +A +V +L G Sbjct: 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIE-----------------GIS 45 Query: 495 KDQVESMIIHAR 506 + MI+ AR Sbjct: 46 EKAAAKMIMGAR 57 >gi|315427207|dbj|BAJ48820.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum] gi|315427272|dbj|BAJ48884.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum] Length = 320 Score = 41.9 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 20/87 (22%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 ++ +PG+ +K+ L E G T+E +A +V +L+ + G Sbjct: 6 NDIEELPGVSAKLAEKLRELGYSTVESIATATVSELV------------------AAGVD 47 Query: 495 KDQVESMIIHARY--KMGWIEKEKVAD 519 ++ +I AR ++ W+ +++A+ Sbjct: 48 EEHASRIISAAREGIEIAWVTAKELAE 74 >gi|161527861|ref|YP_001581687.1| NusA family protein [Nitrosopumilus maritimus SCM1] gi|160339162|gb|ABX12249.1| NusA family KH domain protein [Nitrosopumilus maritimus SCM1] Length = 154 Score = 41.9 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---E 303 + +G +G G ++++ ++ +++V + D A F+ N L +V++V ++ + Sbjct: 43 NTGKMGLAIGKGGMHIKSLQNIVKR-NVELVEFDEDPAKFLSNLLNSKLVSEVKINTRAD 101 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V+V + + +GR G+N A L DI Sbjct: 102 GTKQAIVMVDPRKKGIVVGREGRNAEKARMLAKRYFDI 139 >gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941] Length = 388 Score = 41.9 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + +D R + +++ Q+ R+A++ R E + G+I++G V ++ Sbjct: 169 VGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP--GDILTGRVNQLTNF 226 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 +DLG +DG+ E RE L PG V+ + ++ E+ + L R P Sbjct: 227 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLRRLQPN 286 >gi|126459376|ref|YP_001055654.1| Fis family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249097|gb|ABO08188.1| transcriptional regulator, Fis family [Pyrobaculum calidifontis JCM 11548] Length = 312 Score = 41.9 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L + G+ K L E G+ ++E LA +V++L+ ++ + +GT Sbjct: 8 DPLEGLEGVGPKTLERLRELGVTSVEHLAEFTVEELVEAGVEYDRAVKILQQAIQRVGTT 67 Query: 495 KDQVESMIIHARY 507 + + AR Sbjct: 68 RP------MTARE 74 >gi|291532985|emb|CBL06098.1| hypothetical protein MHY_11450 [Megamonas hypermegale ART12/1] Length = 65 Score = 41.9 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 VIVP QLSLAIG+ GQN RLA++LTGW IDI +E + + + + + Sbjct: 3 RVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSETQAAEEGFDSDDMNMVNVVSEESF 62 Query: 369 D 369 Sbjct: 63 S 63 >gi|91773155|ref|YP_565847.1| transcription elongation factor NusA-like protein [Methanococcoides burtonii DSM 6242] gi|91712170|gb|ABE52097.1| Transcription termination factor NusA [Methanococcoides burtonii DSM 6242] Length = 141 Score = 41.9 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDE-- 303 + +GA +G G + V +L +K I+++ +S + TF+ NA V V + Sbjct: 40 NTGDMGAAIGKCGDNLNRV--KLSVDKHIELIEYSAEPVTFIKNAFGTVSVRSVRISSKG 97 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWT 338 D V V + LAIGR G N+ ++ G Sbjct: 98 DKNIAYVDVAANEKGLAIGRNGSNIDKIKRVVGRH 132 >gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1] gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1] Length = 393 Score = 41.5 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 +G + + +D R + +++ Q+ R+A++ R E + G+I++G V ++ Sbjct: 169 VGQTIPLKVIEVDRDRNRLVLSERSATQEWRKAQKQRLLTELQP--GDILTGRVNQLTNF 226 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 +DLG +DG+ E RE L PG V+ + ++ E+ + L R P Sbjct: 227 GAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLRRLQPN 286 >gi|18313927|ref|NP_560594.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] gi|18161497|gb|AAL64776.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] Length = 311 Score = 41.5 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 E+L SI G+ K L E G+ ++E LA +V++L+ ++ L +G Sbjct: 6 EDLQSIEGVGPKTLEKLRELGVTSVEHLAEFTVEELVEAGIEYDRAVKLLQQALQRVG 63 >gi|156742613|ref|YP_001432742.1| hypothetical protein Rcas_2652 [Roseiflexus castenholzii DSM 13941] gi|156233941|gb|ABU58724.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941] Length = 437 Score = 41.5 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +++L IPGI I L GI T LA CS DL W+ I + + Sbjct: 106 PADDLQQIPGIGPAIARRLRTAGITTFAALAACSPSDLAAWTGRSAEQIVRMGWIERARD 165 Query: 493 TP 494 Sbjct: 166 LT 167 >gi|218961954|ref|YP_001741729.1| putative Ribosomal protein S1 [Candidatus Cloacamonas acidaminovorans] gi|167730611|emb|CAO81523.1| putative Ribosomal protein S1 [Candidatus Cloacamonas acidaminovorans] Length = 503 Score = 41.5 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 18/160 (11%) Query: 114 AKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI-- 171 ++++RE ER L K KVG+I+ G V R+ +DLG +G++ E Sbjct: 183 VSHRQLEEMREQERKETALA-KLKVGDIVKGKVLRMTTFGAFIDLGGIEGLMHVSEISWQ 241 Query: 172 ----SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVK 227 ++ L+ G ++ I D+ +G ++ LSR + F + + E++ G + Sbjct: 242 HIVRPQDELKKGQEIEVKILDI----KGEKIALSRK--VLLEDPFEVAMKELHEGDIINC 295 Query: 228 AVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVT 267 V R A + + P+ SR + + Sbjct: 296 RVLRLHNFGAFAELKPGVEGLIPISEM-----SRNRNISH 330 >gi|14601671|ref|NP_148212.1| transcription elongation factor NusA-like protein [Aeropyrum pernix K1] gi|85544478|pdb|2CXC|A Chain A, Crystal Structure Of Archaeal Transcription Termination Factor Nusa gi|88192683|pdb|2CY1|A Chain A, Crystal Structure Of Ape1850 gi|5105541|dbj|BAA80854.1| NusA protein homolog [Aeropyrum pernix K1] Length = 144 Score = 41.5 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 258 RGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKE 315 RG R+ ++ E + I++V +S D V N + + + E ++ + V ++ Sbjct: 53 RGGRLIKLLREALGKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVVIKVSED 112 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDI 341 AIG+ G+NV+ A + + Sbjct: 113 DKGAAIGKGGKNVKRARLVLSKLFGV 138 >gi|167044139|gb|ABZ08822.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_APKG5C13] Length = 154 Score = 41.5 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307 +G +G GS ++++ L+ +++V + D F+ N L P V +V LD + + Sbjct: 47 MGLAIGKGGSNIKSLQNILKR-NVELVEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + +IV + L +GR G+N A DI Sbjct: 106 VTIIVDHGKKGLVVGRDGRNAEKARLFAKRYFDI 139 >gi|15791386|ref|NP_281210.1| transcription elongation factor NusA-like protein [Halobacterium sp. NRC-1] gi|169237147|ref|YP_001690347.1| transcription elongation factor NusA-like protein [Halobacterium salinarum R1] gi|139955|sp|P15739|NUSA_HALSA RecName: Full=NusA protein homolog gi|43544|emb|CAA40428.1| ORF 139 [Halobacterium salinarum] gi|10582041|gb|AAG20690.1| transcription termination-antitermination factor [Halobacterium sp. NRC-1] gi|167728213|emb|CAP15001.1| putative transcription termination factor nusA [Halobacterium salinarum R1] Length = 139 Score = 41.1 bits (95), Expect = 0.41, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIE 309 +GA +G GSRV A+ L + +V +P + FV NAL PA V V + E D Sbjct: 43 MGAAIGDGGSRVDALEATLGR-SVVLVEDAPTAEGFVANALSPAAVYNVTVSENDTTVAY 101 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V E +AIG G N+ A +L DI Sbjct: 102 AEVAHEDKGVAIGADGTNIETAKELAARHFDI 133 >gi|145591606|ref|YP_001153608.1| Fis family transcriptional regulator [Pyrobaculum arsenaticum DSM 13514] gi|145283374|gb|ABP50956.1| transcriptional regulator, Fis family [Pyrobaculum arsenaticum DSM 13514] Length = 312 Score = 41.1 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 ++L S+ G+ K L E G+ ++E LA +V++L+ ++ L+ G Sbjct: 9 DDLSSLEGVGPKTLERLRELGVVSVEHLAEFTVEELVEAGVEYDRAVKIIQQALAKAG 66 >gi|222445203|ref|ZP_03607718.1| hypothetical protein METSMIALI_00826 [Methanobrevibacter smithii DSM 2375] gi|261350235|ref|ZP_05975652.1| transcription termination factor NusA [Methanobrevibacter smithii DSM 2374] gi|222434768|gb|EEE41933.1| hypothetical protein METSMIALI_00826 [Methanobrevibacter smithii DSM 2375] gi|288861021|gb|EFC93319.1| transcription termination factor NusA [Methanobrevibacter smithii DSM 2374] Length = 143 Score = 41.1 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDED---VG 306 +G +G GS V V + +K I+IV S D F+ N L PA V V + + Sbjct: 45 MGLAIGKGGSTVSKVQRAV--DKGIEIVELSDDPIQFIKNLLSPAEVQGVKVLQKESGEK 102 Query: 307 RIEVIVPKEQLSLAIGRRGQNV 328 V +AIG+ G N+ Sbjct: 103 IATVTADNTNKRIAIGKNGVNI 124 >gi|124515665|gb|EAY57174.1| ribosomal protein S1 [Leptospirillum rubarum] Length = 475 Score = 41.1 bits (95), Expect = 0.44, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 10/138 (7%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L+ R D IG + + M+ R + +++V++++ R+ + Sbjct: 40 PGSQIDLRPVR--DMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 97 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K+ GEI+ G VK + +DLG DG++ + +E + GD+V + Sbjct: 98 KE--GEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLK 155 Query: 189 VRREQRGPQVLLSRTHPQ 206 +E + L + P Sbjct: 156 HDKETGRVSLGLKQLTPD 173 >gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum str. IM2] gi|20139514|sp|Q8ZYR9|RADA_PYRAE RecName: Full=DNA repair and recombination protein radA gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2] gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum] Length = 333 Score = 41.1 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 22/101 (21%) Query: 410 QGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDD 469 + + + + ++ V E + GI L E G T+ D+A SV + Sbjct: 4 KKKKADAEVSQTQATVEVRADVDVEE----LEGIGRVTGAKLKERGYYTVRDIAFASVKE 59 Query: 470 LLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 L +D+ + +I AR +G Sbjct: 60 LAEIIG------------------NEDRAQQIIEAARKMLG 82 >gi|150401406|ref|YP_001325172.1| DNA repair and recombination protein RadA [Methanococcus aeolicus Nankai-3] gi|150014109|gb|ABR56560.1| DNA repair and recombination protein RadA [Methanococcus aeolicus Nankai-3] Length = 322 Score = 41.1 bits (95), Expect = 0.46, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 17/74 (22%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +++ L +PG+ L E G +A ++ +L+ G Sbjct: 1 MTDNLTDLPGVGPSTAEKLIEGGYIDFMKIATATIGELVDIE-----------------G 43 Query: 493 TPKDQVESMIIHAR 506 + MI+ AR Sbjct: 44 ISEKAAAKMIMGAR 57 >gi|150401215|ref|YP_001324981.1| transcription elongation factor NusA-like protein [Methanococcus aeolicus Nankai-3] gi|150013918|gb|ABR56369.1| NusA family KH domain protein [Methanococcus aeolicus Nankai-3] Length = 184 Score = 41.1 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 10/163 (6%) Query: 220 YNGIVQVKAVSRDPGSRAKLAVFSSDSSI------DPVGACVGMRGSRVQAVVTELRDEK 273 +GI+++ + + + S D I +GA +G G V+ + + Sbjct: 7 KDGIMKMALFEKITNAEVMDCI-SDDERIIFIVKEGDIGAAIGKGGENVRNATEKFGK-R 64 Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 ID+V +S D FV N L P + V + D + V V + +G RG+N+ Sbjct: 65 IDVVEYSTDLKQFVRNLLAPLKLDDVWVKKYNDDLVVYVRVHPKLRKSIVGDRGKNINRT 124 Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAH 374 + D + S +R + + Sbjct: 125 VDIIKRLTDATNIKVISDSRPPKKFNSNKPKTDKPAEKQSTDK 167 >gi|71024351|ref|XP_762405.1| hypothetical protein UM06258.1 [Ustilago maydis 521] gi|46101905|gb|EAK87138.1| hypothetical protein UM06258.1 [Ustilago maydis 521] Length = 950 Score = 41.1 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 14/114 (12%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAA--RSLYGTMSDIRVEINPETGDISLF-RLLEVVEEV 72 + EKS++ + +L+ + ++ A + G + IRV I G I + R + Sbjct: 610 LEQEKSLEPESILAAIETALASGAPLENTEGQVKGIRVAI-RRDGLIRVTERNITAFPST 668 Query: 73 ENYTCQISLKVARDRDPSIDIGGVV----SDPLPPMDFGRVAVQSAKQVIIQKV 122 + + PS+ + + + L P+ F + + + Q+V Sbjct: 669 LDKGIE------AAPPPSVRLDSIATRVRTLDLEPIVFNKTDARGFYEAAKQRV 716 >gi|124485200|ref|YP_001029816.1| aminotransferase, class I and II [Methanocorpusculum labreanum Z] gi|124362741|gb|ABN06549.1| NusA family KH domain protein [Methanocorpusculum labreanum Z] Length = 157 Score = 40.7 bits (94), Expect = 0.54, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RD K + + +G +G +G+ ++ K+++V ++PD F+ N Sbjct: 25 ARDCVVDDKFSRILFVINPGEMGLAIGKKGASIKKASDAFGK-KVEVVEYNPDKVQFIRN 83 Query: 290 ALRPAIVTKVVLDEDVGR----IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 P V V +ED + V LAIG+ G+N+ A +L DI Sbjct: 84 CFLPVHVQTVTFEEDEEENTEVAYIEVADTDRGLAIGKEGRNIIKAKKLAFRQFDI 139 >gi|257387054|ref|YP_003176827.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Halomicrobium mukohataei DSM 12286] gi|257169361|gb|ACV47120.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Halomicrobium mukohataei DSM 12286] Length = 464 Score = 40.7 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 48/156 (30%) Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 QL G +I E + +E + + E + Sbjct: 309 QLMGEYDHLIPPEASKPFNEVVGSEDVTTMEFSTGHIGLSVSSSTHENLWPDVCDWYKER 368 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 + A D + AV I + + + ++ S+ GI L Sbjct: 369 NRQAEASDDDSDEAVPIDVESPADDAAESDDGEAAHESAADAPDVASVDGIGPTYADRLR 428 Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFL 488 E GI+T++DLAG +L +E + + L Sbjct: 429 EAGIETVDDLAGHDAAELAEIAETTESRVRDWLDQL 464 >gi|118579437|ref|YP_900687.1| HNH nuclease [Pelobacter propionicus DSM 2379] gi|118502147|gb|ABK98629.1| HNH nuclease [Pelobacter propionicus DSM 2379] Length = 326 Score = 40.7 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 12/134 (8%) Query: 173 RENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKA---V 229 RE LR + + ++ + R + ++R + L + IV+ V Sbjct: 143 REVLREALLLSCFSEELAAQLREQSI-INREAFDYSRVLEEQAHLPLVKEIVEEYNYRLV 201 Query: 230 SRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVIN 289 +RD G R ++ V + D C G R+ + IV WS + N Sbjct: 202 ARDQGFR-RIVVTTYDHR---CALC----GVRIVTPEGHTAVDAAHIVPWSKSRNDDIRN 253 Query: 290 ALRPAIVTKVVLDE 303 + + DE Sbjct: 254 GMALCKLCHWAFDE 267 >gi|206602279|gb|EDZ38761.1| Ribosomal protein S1 [Leptospirillum sp. Group II '5-way CG'] Length = 591 Score = 40.7 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 24/198 (12%) Query: 16 VAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRV-EINPETGDISLFRLLEVVEEVEN 74 ++ EK+ DR V + + + I I+ G +++ +V + Sbjct: 109 LSKEKA-DRMKVWDAIEE--------QFNRSDVIEGRIISRIKGGMTV----DVGLKAFL 155 Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 QI L+ R D IG + + M+ R + +++V++++ R+ + Sbjct: 156 PGSQIDLRPVR--DMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 213 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYD 188 K+ GEI+ G VK + +DLG DG++ + +E + GD+V + Sbjct: 214 KE--GEILEGIVKNITDYGAFIDLGGIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLK 271 Query: 189 VRREQRGPQVLLSRTHPQ 206 +E + L + P Sbjct: 272 HDKETGRVSLGLKQLTPD 289 >gi|207109156|ref|ZP_03243318.1| transcription elongation factor NusA [Helicobacter pylori HPKX_438_CA4C1] Length = 93 Score = 40.7 bits (94), Expect = 0.58, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 23 DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEE-----VENYTC 77 ++++ V+ + K A++ ++ V E + L +L+EV+E+ + + + Sbjct: 2 PKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLVEVLEDNDERLINDPSK 59 Query: 78 QISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAV 111 ISL A++ DPS+ I +S L + + A+ Sbjct: 60 YISLSKAKEMDPSVKIKDELSYSLSLENMKQGAI 93 >gi|302348720|ref|YP_003816358.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] gi|302329132|gb|ADL19327.1| Putative ski2-type helicase [Acidilobus saccharovorans 345-15] Length = 724 Score = 40.7 bits (94), Expect = 0.61, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 46/136 (33%), Gaps = 13/136 (9%) Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREY----LEGIDITLQKKIRELGVSEEL 437 + E V ++ASI + A + A + L K E GV EL Sbjct: 587 DKIAETYDVGPGDVASIIDTAKWIASSLAEVAPAAGLPEEVSEKLRLLSKRIEEGVKPEL 646 Query: 438 CSI---PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + PG+ L G KT+E LA S +LL G L G Sbjct: 647 LQLVEIPGVGRVRARRLYNAGFKTLESLATASPQELLRI---PGIGPATVASILEFFG-R 702 Query: 495 KDQVESMIIHARYKMG 510 K++ S+ R G Sbjct: 703 KEEAASI--KGRGHEG 716 >gi|123456065|ref|XP_001315771.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] gi|121898458|gb|EAY03548.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] Length = 876 Score = 40.7 bits (94), Expect = 0.63, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 75/214 (35%), Gaps = 20/214 (9%) Query: 288 INALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEED 347 I+ + ++V K+ L +D+ + V PK + S + + ++ ++ ++ + Sbjct: 635 ISKIVSSMVNKICLTDDLHILLVCCPKNENSQIL-IPKISSQIFERVIRNHLNCVMIILG 693 Query: 348 SINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV--EELACVKISEIASIEGFDEET 405 + + + +LL + + + + + +EIA D T Sbjct: 694 KTKEEIEKMIVLNAAGFENKTTKEEENLLKRIYISSILCDLVNEISFTEIAEKYKIDRGT 753 Query: 406 AVEIQGRAREY--------------LEGIDITLQKKIRELGVSEELCSI---PGIDSKIK 448 +Q + L +++ +K V +EL + PG+ + Sbjct: 754 VQSLQTSSAAVAGMATRFCESMGYSLVAAQLSIMRKRLSFCVKQELLELVSIPGVTPENA 813 Query: 449 VALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 L +NGI E L+ S+ +L N Sbjct: 814 RILFDNGISNAERLSTMSIGELNEIIPNVHWKKI 847 >gi|326436744|gb|EGD82314.1| hypothetical protein PTSG_02981 [Salpingoeca sp. ATCC 50818] Length = 1435 Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%) Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 + ++ AL E+ I T++DL V ++L L+ G + Sbjct: 1363 LDHHSLLPQVAPALAEHDIDTLDDLVELVVGEMLTVQ------------VLTDAGVTMGK 1410 Query: 498 VESMIIHARYK 508 +I A+ Sbjct: 1411 ANKLIRLAKKH 1421 >gi|289581819|ref|YP_003480285.1| NusA family KH domain protein [Natrialba magadii ATCC 43099] gi|289531372|gb|ADD05723.1| NusA family KH domain protein [Natrialba magadii ATCC 43099] Length = 166 Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR-IEVIVP 313 +G G ++ + + +V + D TFV N L PA V V + E+ V V Sbjct: 74 IGPEGRTIKRFEDRVDL-PVRLVENAADPETFVANTLAPAAVYNVTISENNDTVAYVEVA 132 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +AIG G+ + A L +I Sbjct: 133 DADRGIAIGSNGRTIEAARTLAQRHFEI 160 >gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum DSM 4184] gi|143811446|sp|Q9UWR5|RADA_PYRIL RecName: Full=DNA repair and recombination protein radA gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum DSM 4184] Length = 330 Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 18/93 (19%) Query: 418 EGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENK 477 + D + + E+ ++ + G+ L E G T+ D+A SV +L Sbjct: 5 KRKDAEVAQARVEITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-- 62 Query: 478 GGNIEKFDGFLSSLGTPKDQVESMIIHARYKMG 510 +++ + ++ AR +G Sbjct: 63 ----------------NEERAQQIVEAARKMLG 79 >gi|261403642|ref|YP_003247866.1| NusA family KH domain protein [Methanocaldococcus vulcanius M7] gi|261370635|gb|ACX73384.1| NusA family KH domain protein [Methanocaldococcus vulcanius M7] Length = 174 Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 3/132 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ E +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKT-AEEKFGKKVDIIEYSDDWRKFIRNIFAPIHLEDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 + V G +G+N+ A ++ I + + + F + Sbjct: 103 FIKVSPRSRKAIFGEKGKNLERALEILKRHTKITKIKVIVEKPKPKKRRPRRSFKEQKEE 162 Query: 369 DEIIAHLLVAEG 380 + V Sbjct: 163 TQENETKQVDGQ 174 >gi|322695791|gb|EFY87593.1| AAA family ATPase, putative [Metarhizium acridum CQMa 102] Length = 2123 Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 98/297 (32%), Gaps = 35/297 (11%) Query: 191 REQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAV--------- 241 ++ G +++ P ++ + V +G+V+ S DP R ++ Sbjct: 490 KQDDGFEIIGKNNKPMRASEILELWVQGGDSGVVRALLASMDPACRPVWSIPLCSRREFF 549 Query: 242 --FSSDSSIDPVG--ACVGMRGSRVQAVVTELRDEKIDIVVWSPDS-------ATFVINA 290 + S D AC+ SR+Q + L +E V+ S A + Sbjct: 550 NQWCSKVRHDQTEEFACLAEMSSRIQREIDSLYNESKRKVLQSKRIIGCTTTAAAMYQSI 609 Query: 291 LRPAIVTKVVLDE-----DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEE 345 + A V+++E + I + + + IG Q L ++ +T+ + E Sbjct: 610 IESAQPDMVLVEEAGEILEAHIITALSSSVKQLVLIGDHKQ---LRPKVNNYTLTVEKGE 666 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 ++N Q ++ +H E V LA + + + + + E Sbjct: 667 GFNLNMSLFERLIHQGHSYTTLREQHRSHP---EISHFVRRLAYEHLED--NPKTLEREK 721 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IP-GIDSKIKVALGENGIKTME 460 ++GR + + E + + K+ L + G K+ Sbjct: 722 VRGLKGRVIFVHHEHQEEKLADVADRRPGESKRNAFEAEMVLKMVRYLSQQGYKSKN 778 >gi|163734022|ref|ZP_02141463.1| dehydrogenase, putative [Roseobacter litoralis Och 149] gi|161392558|gb|EDQ16886.1| dehydrogenase, putative [Roseobacter litoralis Och 149] Length = 765 Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 19/118 (16%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAAR-----SLYGTMSDI-RVEINPETGDISL 62 +L++A+ +A EK RD + + AAR + + V I+P+TG +S+ Sbjct: 583 MLEVAE-LAREKG--RDDL-------LSHAARATLPARSFPNGCHVSEVVIDPDTGVVSV 632 Query: 63 FRLLEVVEEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVII 119 R VV++ N + L + IG +S+ + + G++ S + Sbjct: 633 DRY-TVVDDFGNLINPM-LAEGQVHGGVAQGIGQAISEHVVFDEQGQLLTASFMDYAM 688 >gi|225848130|ref|YP_002728293.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644676|gb|ACN99726.1| ribosomal protein S01 [Sulfurihydrogenibium azorense Az-Fu1] Length = 573 Score = 40.0 bits (92), Expect = 0.97, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 63/147 (42%), Gaps = 16/147 (10%) Query: 75 YTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEF 134 +IS +R + + +G V + ++ K ++ K+ E + +F Sbjct: 213 PKSEISWDKSRKVEEVLKVGDEVEVVVK-------EIKDKKPILSLKLLE---GNPWDKF 262 Query: 135 KDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETIS------RENLRPGDRVKSYIYD 188 +G+++ +K + G ++VDLG +G I E ++NL+ GD V + I++ Sbjct: 263 DKNIGDVVEVKIKDINKGGLVVDLGLLEGFIPNSEISHFDYVKAKKNLKVGDTVVAKIFE 322 Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHME 215 + +E+ ++ + + + K Sbjct: 323 IDKEKGKVKLSIKQAQENPLEKFLKEN 349 >gi|326436787|gb|EGD82357.1| hypothetical protein PTSG_03021 [Salpingoeca sp. ATCC 50818] Length = 420 Score = 40.0 bits (92), Expect = 0.98, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%) Query: 438 CSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 + ++ AL E+ I T++DL V ++L L+ G + Sbjct: 348 LDHHSLLPQVAPALAEHDIDTLDDLVELVVGEMLTVQ------------VLTDAGVTMGK 395 Query: 498 VESMIIHARYK 508 +I A+ Sbjct: 396 ANKLIRLAKQH 406 >gi|167389716|ref|XP_001739057.1| hypothetical protein [Entamoeba dispar SAW760] gi|165897408|gb|EDR24579.1| hypothetical protein EDI_082040 [Entamoeba dispar SAW760] Length = 500 Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 15/133 (11%) Query: 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL--------QKKIRE 430 E + + +++ + +I + + +Q A+EY + + +K +E Sbjct: 298 EQITVNVKYSHARVTSLPTILVLNPGSWKALQQTAKEYEDFDWLEKNSVVLQTKEKLFKE 357 Query: 431 LGVSEELCS----IPGIDSKIKVALGENGI---KTMEDLAGCSVDDLLGWSENKGGNIEK 483 + EL G+D K+ L EN + ++D+ ++D+L G E Sbjct: 358 PPPNPELMQDKSKYEGLDPKLVEMLLENEVEEDLILDDMGDDTIDELDGAVEQLEQESLP 417 Query: 484 FDGFLSSLGTPKD 496 L ++ Sbjct: 418 PPLQLEQPIIDEE 430 >gi|119357530|ref|YP_912174.1| ferredoxin [Chlorobium phaeobacteroides DSM 266] gi|119354879|gb|ABL65750.1| ferredoxin [Chlorobium phaeobacteroides DSM 266] Length = 355 Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 12/70 (17%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495 +L ++ GI + L + G+KT++ L LL ++ KG + + + Sbjct: 224 DLAALEGISEAQAIKLIKAGVKTLDML-------LLKGADRKGRKLLADET-----ALSE 271 Query: 496 DQVESMIIHA 505 ++V +++ A Sbjct: 272 EEVLTLVNRA 281 >gi|256811207|ref|YP_003128576.1| NusA family KH domain protein [Methanocaldococcus fervens AG86] gi|256794407|gb|ACV25076.1| NusA family KH domain protein [Methanocaldococcus fervens AG86] Length = 174 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ E +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKK-AEEKFGKKVDIIEYSDDWRKFIRNIFAPIQLEDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 + + G +G+N+ A Q+ I + N++ + + + Sbjct: 103 FIRINPRVRRAVFGEKGKNLERALQILKRHTKITKIKVIIDNQKFKRKKARKPVNEEQQQ 162 Query: 369 DEIIAHLLVAEG 380 ++ A V Sbjct: 163 EQAEAKQEVKNE 174 >gi|332667958|ref|YP_004450746.1| hypothetical protein Halhy_6050 [Haliscomenobacter hydrossis DSM 1100] gi|332336772|gb|AEE53873.1| hypothetical protein Halhy_6050 [Haliscomenobacter hydrossis DSM 1100] Length = 581 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELG---VSEELCSIPGIDSKIKVALGENGIKTME 460 + E + + G + L I GI K++ L ENGI++ + Sbjct: 239 DFVNEAKIEKMAAKVAELRSAGSARGGYGRIFLDNNLQLIEGIGPKVEAVLQENGIRSWD 298 Query: 461 DLAGCSVDDLLGW 473 DLAG S D+L Sbjct: 299 DLAGKSSDELKAI 311 >gi|297583772|ref|YP_003699552.1| methyl-accepting chemotaxis sensory transducer [Bacillus selenitireducens MLS10] gi|297142229|gb|ADH98986.1| methyl-accepting chemotaxis sensory transducer [Bacillus selenitireducens MLS10] Length = 492 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 4/162 (2%) Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRR---GQNVRLASQLTGWTIDIITEE 345 N L + + G+ V+V E LA GQ R+ +LT +I E Sbjct: 326 NLLALNASIEAARAGEHGKGFVVVADEVRKLAESSHESTGQIGRILEELTAMIQEIRLES 385 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEET 405 E + + ++ M+ + E A V E++A V+ I+ EE Sbjct: 386 EKNYTSVSESYRTSEQAMKHFHDIEAFAETSVTHMIDLNEKVAEVE-EVFERIQSRTEEV 444 Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKI 447 + A + ++ +S ++ + + +++ Sbjct: 445 TSFTEEAAASVEAIQQLVDEQGGHMNELSRDVKDLEEMTNRL 486 >gi|332816911|ref|XP_003309859.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit beta-2-like [Pan troglodytes] Length = 1792 Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ +++REL S ++ + G D + + Sbjct: 1478 ASEAQQRAQAALDKANASRGQVEQANQELRELIQSVKDFLNQEGADPDSIEMVATRVLEL 1537 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1538 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1596 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1597 KAETVQAA 1604 >gi|331248967|ref|XP_003337104.1| hypothetical protein PGTG_18200 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316094|gb|EFP92685.1| hypothetical protein PGTG_18200 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1084 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 39/116 (33%) Query: 322 GRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF 381 G + R +L ++I E E S ++ + + + + AE F Sbjct: 74 GDEVEAERSGKELRNDDVEINEEIEQSNITADTIDQEKEKHAHQLRHALDLISAMTAEDF 133 Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEEL 437 D +E + + ++ EE Q RA + + ++ E + L Sbjct: 134 FDPKETSPHAPEDYNRMDWLYEEMDANYQERAGDTDRAGEELNEQADEEDANWDSL 189 >gi|223937467|ref|ZP_03629371.1| hypothetical protein Cflav_PD2971 [bacterium Ellin514] gi|223893818|gb|EEF60275.1| hypothetical protein Cflav_PD2971 [bacterium Ellin514] Length = 215 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 189 VRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGS-RAKLAVFSSDSS 247 R Q QV LSR + +L+ + + + ++ + + DP + V S Sbjct: 56 TERRQEQSQV-LSR---EVHKELWEPRLAVMKSNQIRTRGTALDPHWNLVLVGVDSPLPD 111 Query: 248 IDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGR 307 +DP+ G + VV +++D ++ ++ W PD V + LD + Sbjct: 112 VDPLNMLFGPLQTETSHVVRQVKDCEVHVIHWHPDPKQHVRHLFEAFPQAGASLDLENKL 171 Query: 308 IEVIVP 313 + V Sbjct: 172 LFVEAE 177 >gi|283779540|ref|YP_003370295.1| hypothetical protein Psta_1760 [Pirellula staleyi DSM 6068] gi|283437993|gb|ADB16435.1| hypothetical protein Psta_1760 [Pirellula staleyi DSM 6068] Length = 775 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 18/164 (10%) Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 L +E S K R A ++ E + L G V +L Sbjct: 613 LLKSERSAESERPASSGSDKFKLHRKDAVKDAPSIGEKTSQRLHVVGVRTVGDLLETNPV 672 Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGE 453 ++AS TA I+ +E C +PGI L Sbjct: 673 QLASKLKMSHITADTIRQWQKESTLC------------------CRMPGIAGHDAQILVA 714 Query: 454 NGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 +GI+T EDLA D++L E + E SS +++ Sbjct: 715 SGIETPEDLAELPADEVLQLIEPLIESSEGKRILRSSAPPDREE 758 >gi|15669234|ref|NP_248039.1| transcription elongation factor NusA [Methanocaldococcus jannaschii DSM 2661] gi|2499339|sp|Q58447|NUSA_METJA RecName: Full=NusA protein homolog gi|1591699|gb|AAB99049.1| putative transcription termination-antitermination factor (NusA) [Methanocaldococcus jannaschii DSM 2661] Length = 183 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 3/117 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ E +K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKT-AEEKFGKKVDIIEYSDDWRKFIRNIFAPIQLDDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQA 365 + + + G +G+N+ A ++ I + N++ + ++ Sbjct: 103 FIKINPKVRRAVFGEKGKNLERALKILKRHTKITKIKVIVENQKFKRKRAKRPVVKD 159 >gi|119703755|ref|NP_002283.3| laminin subunit beta-2 precursor [Homo sapiens] gi|156630892|sp|P55268|LAMB2_HUMAN RecName: Full=Laminin subunit beta-2; AltName: Full=Laminin B1s chain; AltName: Full=Laminin-11 subunit beta; AltName: Full=Laminin-14 subunit beta; AltName: Full=Laminin-15 subunit beta; AltName: Full=Laminin-3 subunit beta; AltName: Full=Laminin-4 subunit beta; AltName: Full=Laminin-7 subunit beta; AltName: Full=Laminin-9 subunit beta; AltName: Full=S-laminin subunit beta; Short=S-LAM beta; Flags: Precursor gi|119585362|gb|EAW64958.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens] gi|119585363|gb|EAW64959.1| laminin, beta 2 (laminin S), isoform CRA_a [Homo sapiens] gi|225000494|gb|AAI72384.1| Laminin, beta 2 (laminin S) [synthetic construct] Length = 1798 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++++EL S ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|8170714|gb|AAB34682.2| laminin beta 2 chain [Homo sapiens] Length = 1798 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++++EL S ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|1335202|emb|CAA56130.1| beta2/S laminin chain [Homo sapiens] Length = 1798 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++++EL S ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|1103585|emb|CAA92279.1| laminin beta 2 chain [Homo sapiens] Length = 1798 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 406 AVEIQGRAREYLEG------IDITLQKKIRELGVS-EELCSIPGIDSKIKVALGENGI-K 457 A E Q RA+ L+ ++++EL S ++ + G D + + Sbjct: 1484 ASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATRVLEL 1543 Query: 458 TMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKV 517 ++ A + L G + ++ D L+ + E ++ AR W E EK Sbjct: 1544 SIPASAEQ-IQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQDARRARSWAEDEKQ 1602 Query: 518 ADEEVQDA 525 E VQ A Sbjct: 1603 KAETVQAA 1610 >gi|167044064|gb|ABZ08749.1| putative KH domain protein [uncultured marine crenarchaeote HF4000_APKG4H17] Length = 154 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---EDVGR 307 +G +G GS ++++ ++ I+++ + D F+ N L P V +V LD + + Sbjct: 47 MGLAIGKGGSNIKSLKNIIKR-NIELIEYFDDPIKFLKNILNPKFVNEVKLDTKPDGSSQ 105 Query: 308 IEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 +IV + L +GR G N A +I Sbjct: 106 ATIIVDHGKKGLVVGRAGCNAEKARLFAKKYFNI 139 >gi|304312281|ref|YP_003811879.1| hypothetical protein HDN1F_26530 [gamma proteobacterium HdN1] gi|301798014|emb|CBL46236.1| Hypothetical protein HDN1F_26530 [gamma proteobacterium HdN1] Length = 4563 Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 13/185 (7%) Query: 324 RGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFAD 383 +G + +L S+L+ ++ +T ++ T M + V + + Sbjct: 1793 KGLSEKLVSELSTAQVNALTSDQTQSLSATQIKGMTTEQMSKLTVADAKEFVAEQMAGFS 1852 Query: 384 VEELACVKISEI-----ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC 438 ++L + ++ +I + + + + L + G++ + Sbjct: 1853 ADQLNALGSDQLGGMSSDNINALSAKQVSGLTSGSIKALSTDQMAGMSDKVLAGLTSD-- 1910 Query: 439 SIPGIDSKIKVALGENGIKTMED--LAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKD 496 +I G+++ L IK + D + S D + + ++ + G D Sbjct: 1911 NIKGLETADIAKLATGAIKGLSDKLIGDLSTDQVKAMTSDQVQQLSAK----QVQGLSTD 1966 Query: 497 QVESM 501 Q++SM Sbjct: 1967 QIKSM 1971 Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 28/190 (14%) Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKIS 393 LT I + + + + + + D++ A +L + Sbjct: 1096 LTSDNIKGLETADLAKISTAALKGLSGAQIGQMGTDQLNALTSDQAQSLSATQLKGITTE 1155 Query: 394 EIASIEGFDEETAVEIQGRAREYLEGIDI------------TLQKKIRELGVSEELCSIP 441 +++ + D + E Q A + + + G++ + +I Sbjct: 1156 QMSKLGTADVKDLTEKQAAALSADQLNALGTNISALTTDSVAALTATQVKGLASD--AIK 1213 Query: 442 GIDSKIKVALG--------ENGIKTME--DLAGCSVDDLLGWSENKGGNIEKFDGFLSSL 491 + + AL + IK +E DLA S D L G S+ + K G Sbjct: 1214 ALTTDQAAALTNTQISGLTSDNIKGLETADLAKLSTDALKGLSD----KLIKDMGTDQFN 1269 Query: 492 GTPKDQVESM 501 DQV+S+ Sbjct: 1270 ALGSDQVQSL 1279 >gi|126460634|ref|YP_001056912.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548] gi|126250355|gb|ABO09446.1| Rad51-like protein [Pyrobaculum calidifontis JCM 11548] Length = 314 Score = 39.6 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 435 EELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L + G+ K L E G+ ++E LA +V++L+ ++ + +GT Sbjct: 10 DPLEELEGVGPKTLERLRELGVTSVEHLAEFTVEELVEAGVEYDRAVKILQQAIQRVGTT 69 Query: 495 KDQVESMIIHARY 507 + + AR Sbjct: 70 RP------LTARE 76 >gi|289193128|ref|YP_003459069.1| NusA family KH domain protein [Methanocaldococcus sp. FS406-22] gi|288939578|gb|ADC70333.1| NusA family KH domain protein [Methanocaldococcus sp. FS406-22] Length = 187 Score = 39.6 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 3/145 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVG--RI 308 VGA +G G V+ + K+DI+ +S D F+ N P + V + Sbjct: 44 VGAAIGKGGENVKTAEEKFGK-KVDIIEYSDDWRKFIRNIFAPIQLEDVWVKRVGKDVVA 102 Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINV 368 + + + G +G+N+ A ++ I + N++ + + Sbjct: 103 FIKINPKVRRAVFGEKGKNLERALKILKRHTKITKIKVIVENQRFKRRGARKPVAKEQQQ 162 Query: 369 DEIIAHLLVAEGFADVEELACVKIS 393 ++ A+ +++ Sbjct: 163 EQAEKQPEAAQEVEAQQDVKETTNE 187 >gi|313888064|ref|ZP_07821742.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846019|gb|EFR33402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 696 Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + D + + +++ ++QK + RD Y + K+ G+II GTV+R+ Sbjct: 421 IGEEFETEIIDFDKRKRRIVLSRKNVLQKELDKVRDEVYDKLKE--GDIIEGTVQRLTNF 478 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRT 203 VD+G DG+I E + + PGD VK + +V +E+ + L +T Sbjct: 479 GAFVDVGGVDGLIHISELSWNRVKHPSDVVAPGDVVKVQVLNVDKEKNRIALGLKQT 535 >gi|159045090|ref|YP_001533884.1| hypothetical protein Dshi_2550 [Dinoroseobacter shibae DFL 12] gi|157912850|gb|ABV94283.1| hypothetical protein Dshi_2550 [Dinoroseobacter shibae DFL 12] Length = 1471 Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 19/207 (9%) Query: 266 VTELRDEKIDIVVWSPDSAT--FVINALRPAIVT---KVVLDEDVGRIEVIVPKEQLSLA 320 + E E I++ + P A + A P+ + K+++ E G+ + + ++ Sbjct: 1252 LQEAGIENIEVRPYDPKLADRYLLDFARTPSRLDPSAKIIVYERDGKAAFVAEERITTVT 1311 Query: 321 IGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEG 380 A +LT I E S + + + + ++ V Sbjct: 1312 --------TPAPKLTPAEEARIVELT-SRIEKAKDTSAAEEALANLKLETAKIETEVDA- 1361 Query: 381 FADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440 V A + E IE +T +E + + + ++ + L + + Sbjct: 1362 -LRVMREAEAQSLEALKIERDSLKTELEGLRSGLDAVGEMQRKMKVDVDSLRP---VTEL 1417 Query: 441 PGIDSKIKVALGENGIKTMEDLAGCSV 467 G+ ++ L G++T+ DLA S Sbjct: 1418 EGVSREVAARLERAGVRTIGDLATAST 1444 >gi|205372598|ref|ZP_03225409.1| glutamate-1-semialdehyde aminotransferase [Bacillus coahuilensis m4-4] Length = 430 Score = 39.2 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 18 YEKSI--DRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLE-VV--EEV 72 EK I D + +V+ + I KAA + + IN G ++++ E VV E+ Sbjct: 319 KEKGIYEKLDQLGAVLEEGILKAAEKHHTP-----ITINRLKGALTVYFTKEKVVNYEQA 373 Query: 73 ENYTCQI 79 EN ++ Sbjct: 374 ENTDGEM 380 >gi|329765749|ref|ZP_08257318.1| NusA family protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137815|gb|EGG42082.1| NusA family protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 154 Score = 39.2 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLD---E 303 + +G +G G ++++ ++ +++V + D A F++N L +V++V L+ + Sbjct: 43 NTGKMGLAIGKGGIHIKSLQNIVKK-TVELVEFDEDPAKFLMNLLNSKLVSEVKLNTRAD 101 Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 + V+V + + +GR G+N A L DI Sbjct: 102 GSKQAIVMVDPRKKGIVVGREGRNAEKARLLAKRYFDI 139 >gi|110679057|ref|YP_682064.1| dehydrogenase, putative [Roseobacter denitrificans OCh 114] gi|109455173|gb|ABG31378.1| dehydrogenase, putative [Roseobacter denitrificans OCh 114] Length = 765 Score = 38.8 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%) Query: 9 LLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDI-RVEINPETGDISLFRLLE 67 +L++A+ +A EK RD +LS ++ + I V I+P+TG + + R Sbjct: 583 MLEVAE-MAREKG--RDDLLS--HEARATLPARSFPNGCHISEVVIDPDTGVVRVDRY-T 636 Query: 68 VVEEVENYTCQISLKVARDRDPSID-IGGVVSDPLPPMDFGRVAVQSAKQVII 119 VV++ N + L + IG +S+ + + G++ S + Sbjct: 637 VVDDFGNLINPM-LAEGQVHGGVAQGIGQAISEHVVFDEQGQLLTASFMDYAM 688 >gi|332292388|ref|YP_004430997.1| ribosomal protein L21 [Krokinobacter diaphorus 4H-3-7-5] gi|332170474|gb|AEE19729.1| ribosomal protein L21 [Krokinobacter diaphorus 4H-3-7-5] Length = 220 Score = 38.8 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIE 482 + ++ +++L + GI KI L E GI T A + D SE G Sbjct: 130 APKATAKKSSKADDLKKVEGIGPKIAETLVEAGIST---FAELAKTDAAKISEIIAGVRG 186 Query: 483 KF 484 Sbjct: 187 NH 188 >gi|229816427|ref|ZP_04446728.1| hypothetical protein COLINT_03480 [Collinsella intestinalis DSM 13280] gi|229807969|gb|EEP43770.1| hypothetical protein COLINT_03480 [Collinsella intestinalis DSM 13280] Length = 736 Score = 38.8 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 13/136 (9%) Query: 379 EGFADVEELACVKISEIASIEGFDEETAVEIQGR-----AREYLEGIDITLQKKIRELGV 433 E F+ +E A I ++ + A I R A + ID T K I ++G+ Sbjct: 116 ENFSSRMMTVFSSDAEHAEIVYYENQKANAIAPRVTDKAASTVRQQIDETFAKTISDVGL 175 Query: 434 SEELCSIPGIDSKIKVALGEN-------GIKTMEDLAGCSVDDLLGWSENKGGNIEKFDG 486 + + +D A N I T+ D A SVD+ G ++ G ++ Sbjct: 176 ATTSSLLEFMDGDQIAAYAGNLSGTLAGAITTLRD-ASGSVDEFAGLLQSSTGLLDSTSD 234 Query: 487 FLSSLGTPKDQVESMI 502 L+S GT E+++ Sbjct: 235 LLASAGTASKDAEALV 250 >gi|116617929|ref|YP_818300.1| glutamate synthase subunit beta [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096776|gb|ABJ61927.1| glutamate synthase (NADH) small subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 484 Score = 38.8 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 42/123 (34%), Gaps = 4/123 (3%) Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLS----LAIGRRGQNVRL 330 +++ + + F+ N+ + VL + ++ K+ + +A+G G N ++ Sbjct: 362 ELIPYQTQTVEFLGNSFGEVTGVRTVLIDANKQVISNSEKDYSADLVLVAVGFTGLNTKI 421 Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390 + L ++++ + D + LV + V Sbjct: 422 LNDLDITRLNVMGTTNQENYMVAGDANTGANLVITAIHDARLVAELVDAKLQSFADRFSV 481 Query: 391 KIS 393 K++ Sbjct: 482 KVN 484 >gi|291276334|ref|YP_003516106.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198] gi|290963528|emb|CBG39359.1| 30S ribosomal protein S1 [Helicobacter mustelae 12198] Length = 529 Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Query: 91 IDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVE 150 G ++ + R +V K + QK++E + ++I + R Sbjct: 53 FQEGDKITVYVSRGGHDRFSVSHKKVLRHQKIQEKIQSLGED----YKDKVIEAKIIRKN 108 Query: 151 YGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVL-------LSRT 203 G VI++ + + + ++E+ G RV+ I +V+ E+ V ++R Sbjct: 109 KGGVILEADGVEYFMPKFHASAKED--KGKRVEVCIINVKPEENSIIVSRKRFFDLVNRN 166 Query: 204 HPQFMVKLFHMEVPEIYNGIVQ 225 H + K+ ++ P +G+V+ Sbjct: 167 HSESAKKIMEIQSP--LDGVVK 186 >gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis 768-20] gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis 768-20] Length = 337 Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 18/81 (22%) Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 E ++ + GI L E G T+ DLA SV ++ Sbjct: 24 EKQAELDVEELEGIGKVTGQKLKERGYYTVRDLAFASVKEIADIIG-------------- 69 Query: 490 SLGTPKDQVESMIIHARYKMG 510 +++ +I AR +G Sbjct: 70 ----NEERAAQIIEAARSMLG 86 >gi|332796428|ref|YP_004457928.1| transcription elongation factor NusA-like protein [Acidianus hospitalis W1] gi|332694163|gb|AEE93630.1| transcription elongation factor NusA-like protein [Acidianus hospitalis W1] Length = 130 Score = 38.8 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 274 IDIVVWSPDSATFVINALRPAIVTKVVL--DEDVGRIEVIVPKEQLSLAIGRRGQNVRLA 331 I+IV +S + V N + PA V V + ++ + + V + +AIG+ G+NV A Sbjct: 55 IEIVAYSDNLEDMVKNLMSPARVRSVKVIDNDSKKTVYITVDPQDKGIAIGKSGKNVVRA 114 Query: 332 SQLTGWTIDI 341 + +DI Sbjct: 115 KLILKRYMDI 124 >gi|124486202|ref|YP_001030818.1| hypothetical protein Mlab_1385 [Methanocorpusculum labreanum Z] gi|124363743|gb|ABN07551.1| NusA family KH domain protein [Methanocorpusculum labreanum Z] Length = 151 Score = 38.4 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 +G +G G ++ + L +I++V + D F+ N +PA V V + + Sbjct: 48 MGIAIGKGGDNIKKMSRVLGK-RIEMVEFDEDREVFIANMFKPAEVASVSYGGRDEPVMI 106 Query: 311 IVPKE-QLSLAIGRRGQNVRLASQL 334 VP+ LAIG+ G + A L Sbjct: 107 TVPERGDFGLAIGKGGSTIEKARIL 131 >gi|229829150|ref|ZP_04455219.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] gi|229792313|gb|EEP28427.1| hypothetical protein GCWU000342_01235 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 38.4 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 12/129 (9%) Query: 81 LKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGE 140 + +RD + +G + + + R + +++I+ + + + + K VG+ Sbjct: 135 VSDRYERDLNKYLGQEIEFKITEFNPRRRRIIGNRKMILVERKSEIQKDLLEKLK--VGD 192 Query: 141 IISGTVKRVEYGNVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQR 194 II GT+K + VDLG DG++ E R+ D+V+ +I ++ Sbjct: 193 IIEGTIKNITDFGAFVDLGGIDGLLHISEMSWGRVENPRKVFNVDDKVRVFIKEIN---- 248 Query: 195 GPQVLLSRT 203 G ++ LSR Sbjct: 249 GTKIALSRK 257 >gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 687 Score = 38.4 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 83/212 (39%), Gaps = 19/212 (8%) Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83 ++ ++ + DS++K + I V+ + +F ++ + +++ + Sbjct: 279 KEEFMNSLEDSLKKIYPKEIVKGTVIDVKDD------EVFVDIQFRADGIIKLDEMTEEE 332 Query: 84 ARDRDPSIDIGGVVS-DPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEII 142 A+D S ++G + + D S ++V KV + + + E++ Sbjct: 333 AKDPKNSFNVGDEIDVFVIKLDDGEGNVALSTRRVEGMKVWQELAQKAEND------ELV 386 Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYIYDVR---REQRGPQVL 199 G V G + V++ +G + I+ ++ + +D++ ++R +++ Sbjct: 387 HGEVVSFNKGGLTVNVNGVNGFVPAS-QIATYFVKNFKKFVGEQWDLKIISIDERKNRLV 445 Query: 200 LSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 LSR + + E+ G V V+R Sbjct: 446 LSRKD--VVEEELDNLWDELEEGQVVKGKVAR 475 >gi|330752238|emb|CBL87195.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] gi|330752261|emb|CBL87217.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] Length = 740 Score = 38.4 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKI--RELGVSEELCSIPGIDSKIKVALGENGI 456 + + + + +A+ T K + + G ++L I GI KI L NGI Sbjct: 621 QQMEADNPAPAKSKAKVESSVKVETKSKSLAKKAEGKPDDLKKIEGIGPKIAELLTTNGI 680 Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + E LA V+++ G + D Sbjct: 681 PSFEALASTEVEEIKEILAEAGSRYKTRD 709 >gi|73669895|ref|YP_305910.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro] gi|72397057|gb|AAZ71330.1| DNA topoisomerase I [Methanosarcina barkeri str. Fusaro] Length = 771 Score = 38.4 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 E+ + ++ ++ + + + G+ L E GI ++E LA +L Sbjct: 672 EWQKTQQEEQAQQPKKEKP-KSIKDLEGVGKATAGKLEEAGITSVEALAEADPVELA 727 >gi|330752193|emb|CBL87151.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] Length = 740 Score = 38.4 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKI--RELGVSEELCSIPGIDSKIKVALGENGI 456 + + + + +A+ T K + + G ++L I GI KI L NGI Sbjct: 621 QQMEADNPAPAKSKAKVESSVKVETKSKSLAKKAEGKPDDLKKIEGIGPKIAELLTTNGI 680 Query: 457 KTMEDLAGCSVDDLLGWSENKGGNIEKFD 485 + E LA V+++ G + D Sbjct: 681 PSFEALASTEVEEIKEILAEAGSRYKTRD 709 >gi|297491200|ref|XP_002707836.1| PREDICTED: FAT tumor suppressor homolog 1-like [Bos taurus] gi|296472443|gb|DAA14558.1| FAT tumor suppressor homolog 1-like [Bos taurus] Length = 4588 Score = 38.4 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 33/235 (14%) Query: 2 VSANRLELLQ---IADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 + N E LQ + V+ +K I+ +++ +A G +R I +T Sbjct: 815 ANDNPPEFLQESYFVE-VSEDKEINSEIIQ-------VEATDKDLGPNGHVRYSILTDTD 866 Query: 59 DISLFRLLEVVE-----EVENYTCQISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQ 112 S+ + VV+ + E ARD+ + V + D + Sbjct: 867 KFSIDSVTGVVKILNPLDREEQQVHYLKVEARDQAREEPQLLSTVILKVSLDDVNDNPPK 926 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKV----GEIISGTVKRVEYGNVIVDLGNSDGVIRRD 168 KVRE + + + + G+ +++G D+ G +R Sbjct: 927 FIPPNYRVKVREDLPEGTIIMWLEAHDPDLGQSSQVRYSLLDHGEGNFDVDKLSGAVRII 986 Query: 169 ETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGI 223 + + E + + Y VR + +G + LS T +EV ++ + Sbjct: 987 QQLDFE------KKQVYNLTVRAKDKGKPISLSSTCY------VEVEVIDVNENL 1029 >gi|148642966|ref|YP_001273479.1| transcription elongation factor NusA-like protein [Methanobrevibacter smithii ATCC 35061] gi|148551983|gb|ABQ87111.1| transcription termination factor, NusA [Methanobrevibacter smithii ATCC 35061] Length = 143 Score = 38.4 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%) Query: 251 VGACVGMRGSRVQAVVTELRDEK-IDIVVWSPDSATFVINALRPAIVTKVVLDED---VG 306 +G +G GS V V + +K I+IV S DS F+ N L PA V V + + Sbjct: 45 MGLAIGKGGSTVSKVQRAV--DKGIEIVELSDDSIQFIKNLLSPAEVQGVKVLQKESGEK 102 Query: 307 RIEVIVPKEQLSLAIGRRGQNV 328 V +AIG+ G N+ Sbjct: 103 IATVTADNTNKRIAIGKNGVNI 124 >gi|297619549|ref|YP_003707654.1| NusA family KH domain-containing protein [Methanococcus voltae A3] gi|297378526|gb|ADI36681.1| NusA family KH domain protein [Methanococcus voltae A3] Length = 189 Score = 38.4 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIV--TKVVLDEDVGRI 308 +GA +G G V+ + KID++ +S D F+ N P + D + Sbjct: 43 IGAAIGKGGENVRNATEKFGR-KIDLIEYSDDVKQFIRNIFAPVELEDVWTKKFGDDLVV 101 Query: 309 EVIVPKEQLSLAIGRRG----QNVRLASQLTGWT 338 + + + IG +G V L S+L+G Sbjct: 102 YLRIHPKLRRAIIGDKGKKIDSAVDLVSRLSGVK 135 >gi|300765878|ref|ZP_07075852.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017] gi|300513455|gb|EFK40528.1| phage tail tape measure protein [Listeria monocytogenes FSL N1-017] Length = 1678 Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 9/167 (5%) Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 ++ + +A G ++V A + T I + + N ++ Sbjct: 798 VNATDKKSAKANNDWDRLVASGAVSKDVASAKKHTNNETASINKADIKKNTEELKRLEKS 857 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 F + ++E A ++ ++ + E A IE +++ IQ Y + Sbjct: 858 RFEEQRKIEENAAGAILKIKENAKKKGVKLSKEEKAEIEQINKDKVTAIQVSESTYSKKS 917 Query: 421 DITLQKKIRELGVSEE---------LCSIPGIDSKIKVALGENGIKT 458 +K+ +E ++ L ++ S++ + +K Sbjct: 918 AEIQKKQRKEATIALSKSAKEQKIILGNLENSKSEMSAKAAASVVKN 964 >gi|330752286|emb|CBL87241.1| ribosomal protein S1 [uncultured Sphingobacteria bacterium] Length = 740 Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%) Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 D + + + ++ + + G ++L I GI KI L NGI T E Sbjct: 626 DNSVPAKAKVKVESSVKVETKSKSLAKKAEGKPDDLKKIEGIGPKIAELLTTNGISTFEA 685 Query: 462 LAGCSVDDLLGWSENKGGNIEKFD 485 LA VD + G + D Sbjct: 686 LASTEVDKIKEILAEAGSRYKTRD 709 >gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Candidatus Methanoregula boonei 6A8] gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei 6A8] Length = 325 Score = 38.1 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 17/74 (22%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495 E+ +PG+ L E G ++E +A S +L +E + Sbjct: 7 EIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEITE-----------------ISE 49 Query: 496 DQVESMIIHARYKM 509 + +I AR Sbjct: 50 STAKKIIKAARESA 63 >gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum cryptofilum OPF8] Length = 336 Score = 38.1 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 17/74 (22%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495 +L + G+ L E G ++E +A + +L ++ G + Sbjct: 28 DLTELEGVGPATAKRLAEAGFTSLESIAMSTPSELAVYA-----------------GISE 70 Query: 496 DQVESMIIHARYKM 509 + +I AR K+ Sbjct: 71 AVAQKIIQAARSKL 84 >gi|222478542|ref|YP_002564779.1| NusA family KH domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451444|gb|ACM55709.1| NusA family KH domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 139 Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDV-GRIE 309 + A +G G V+ L I++V + FV +AL PA V V + E Sbjct: 43 MAAAIGQAGETVEEAERRLAK-SIELVEDADTPEAFVASALAPAAVNAVTISEQNDRVAY 101 Query: 310 VIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 V VP+ +AIG G N+ A L DI Sbjct: 102 VEVPEPDRGVAIGADGANIETARTLAKRHYDI 133 >gi|328869849|gb|EGG18224.1| small MutS related family protein [Dictyostelium fasciculatum] Length = 329 Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 40/205 (19%) Query: 309 EVIVPKEQLSLAIGRRGQNVRLASQLTG-----------------------WTIDIITEE 345 V+V +E IG +G V+ TG I +I + Sbjct: 89 TVVVDRELHKYIIGTKGATVKDIKDKTGATAIDLPDSGDKVSVSGTPDACDRAIAMINDI 148 Query: 346 EDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV----KISEIASIEGF 401 + Q ++ + + L + A+V++LA A+ E Sbjct: 149 KGQHKTQSQKDQDHKDLKDEHEKESQRTDALYKKYQAEVDKLADERTKLNAEADAAFESG 208 Query: 402 DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMED 461 D+ E++ RA++ ++ +K RE+ +++ ++ + +G+KT + Sbjct: 209 DKGKGHELKERAKQLTVQMEQANKKASREI-FADKNKNLDKFTVDL------HGLKTKDA 261 Query: 462 LAGCSVDDLLGWSENKGGNIEKFDG 486 L +L+ + G Sbjct: 262 L------ELMDERMEELKKDSSNKG 280 >gi|171689886|ref|XP_001909882.1| hypothetical protein [Podospora anserina S mat+] gi|170944905|emb|CAP71016.1| unnamed protein product [Podospora anserina S mat+] Length = 1341 Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 12/105 (11%) Query: 399 EGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKT 458 + E E R R+ + + L+ +I+ G+ E+L + + T Sbjct: 462 MERNNERLKEALIRLRDLSQEQEEELKDQIK--GLEEDLREFETMKEQFAA--------T 511 Query: 459 MEDLA--GCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESM 501 E LA +V+DL N G + + ++++ + Sbjct: 512 KEKLAQAEVAVEDLREQLNNALGAEDLIEKITEENMNQAEEIKEL 556 >gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239] Length = 710 Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 9/112 (8%) Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENG-IKTMEDLAGCSVDDLL---GWSENKG 478 ++ E + I G+ + L E G ++++ DL +VDDL GW E Sbjct: 468 AQLERAVEHWARRDALDIEGLGPERVQQLREAGLVESLPDLYDLAVDDLAALEGWGETSA 527 Query: 479 GNIEKFDGFLSSLGTPKDQVESMI-----IHARYKMGWIEKEKVADEEVQDA 525 N+ I AR + +DA Sbjct: 528 ENLIAELAATRDPPLDDFLAGLGIPDVGATTARALAAHFGDLDAILDADEDA 579 >gi|257456491|ref|ZP_05621687.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC 35580] gi|257446151|gb|EEV21198.1| cytidylate kinase/ribosomal protein S1 [Treponema vincentii ATCC 35580] Length = 801 Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 79 ISLKVARDRD-PSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDK 137 IS A+ D P +G S + M F R + V +K E ++ F + Sbjct: 369 ISQAAAQKVDKPESLLGQKGSFYIEKMVFDRKGNRDNIVVNRRKYLEDTVEKNREAFFEN 428 Query: 138 V--GEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVK----SYIYDVRR 191 G+++ G VK +DLG DG++ ++ RP D VK + +R Sbjct: 429 TNIGDVVKGAVKSFTSFGAFIDLGGFDGLLHINDMSWGHVTRPKDFVKKGQEIDLKVIRL 488 Query: 192 EQRGPQVLLSRTH 204 + ++ LS H Sbjct: 489 DPAEKRINLSLKH 501 >gi|256420494|ref|YP_003121147.1| beta-ketoacyl synthase [Chitinophaga pinensis DSM 2588] gi|256035402|gb|ACU58946.1| Beta-ketoacyl synthase [Chitinophaga pinensis DSM 2588] Length = 1413 Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 23/192 (11%) Query: 273 KIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLAS 332 KI V++ D + + D + I+ ++ + AI R QN RL Sbjct: 1131 KIQEVLFYEDMED--QQGVFECTCQLTEMTADTATADFILRRDNRTWAIIRGWQNARL-- 1186 Query: 333 QLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKI 392 I E ++ N ++ I + +V+ F + Sbjct: 1187 --------EIDEPLWKVSMSPLHNSLSEEIAPGIFLFRNSYQRVVSWDFIMKRYFNQAEK 1238 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIR-----ELGVSEELCSIP----GI 443 +++ ++ + I R + Q+K E + + P + Sbjct: 1239 ADLRAM--LPNKRKERIISRVAAKDAVRALLKQEKQEAYYPIEFEIRNDALGKPFPEGSM 1296 Query: 444 DSKIKVALGENG 455 + ++L Sbjct: 1297 TKDLHISLAHKD 1308 >gi|157114471|ref|XP_001652287.1| igf2 mRNA binding protein, putative [Aedes aegypti] gi|108877277|gb|EAT41502.1| igf2 mRNA binding protein, putative [Aedes aegypti] Length = 541 Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 20/113 (17%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E + E+ +V +P+ A ++I Sbjct: 354 NAVGAIIGTKGSHIRNIIRFSGASVKIAPLEADKPLEQQTERKVTIVGTPEAQWKAQYLI 413 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ +E++VP Q+ IG+ GQNVR ++TG I + Sbjct: 414 FEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSIIKL 466 >gi|209732042|gb|ACI66890.1| Mitochondrial 28S ribosomal protein S28 [Salmo salar] Length = 192 Score = 37.7 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186 R+ ++ +++ G V R+ ++ +D G + + T+ E + G RV+ + Sbjct: 95 RNSPLMQMGPAKDKMVIGKVFRIIKDDLYIDFGAKFHCVCKRPTVDGEKYQRGSRVRLRL 154 Query: 187 YDVRREQRGPQVLLSRT---HPQFMVKLFHMEVPEIYN 221 D+ R T F++ L + +I Sbjct: 155 EDLELTSRFLGANTDTTLLEADAFLLGLIESKDAKIKE 192 >gi|329765876|ref|ZP_08257442.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137719|gb|EGG41989.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 709 Score = 37.7 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 406 AVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI---PGIDSKIKVALGENGIKTMEDL 462 EI ++ ++ G+ EEL + GI L ++GIKT++DL Sbjct: 619 LREISKHVERIDLLDELDNLRRRITYGIREELLDLVKVKGIGRIRARMLYKHGIKTLDDL 678 Query: 463 AGCSVDDLLGWSENKGGNIEKFDGFLSSL 491 A V+ L + + L + Sbjct: 679 ANIPVNKLAEIDKIGSTIADNIKSELRKV 707 >gi|126179861|ref|YP_001047826.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] gi|166218763|sp|A3CWU4|RADA_METMJ RecName: Full=DNA repair and recombination protein radA gi|125862655|gb|ABN57844.1| DNA repair and recombination protein RadA [Methanoculleus marisnigri JR1] Length = 324 Score = 37.7 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 17/74 (22%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK 495 +L +PG+ + L E G T+E +A + DL +E + Sbjct: 5 DLEDLPGVGATTAEKLREAGYGTVESVATATTSDLAEAAE-----------------IGE 47 Query: 496 DQVESMIIHARYKM 509 + +I+ AR Sbjct: 48 ATAKKVILAARKMA 61 >gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum] Length = 277 Score = 37.7 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 3 SANRLELLQIADAVAYEK----SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 SA+ L Q +++ K + S + ++ S YG + + RV ++ +TG Sbjct: 24 SASNASLFQAIRSMSSSKLFVGGLSYGTDESSLKEAF-----SQYGDVIEARVIMDRDTG 78 >gi|21229178|ref|NP_635100.1| DNA topoisomerase I [Methanosarcina mazei Go1] gi|20907743|gb|AAM32772.1| DNA topoisomerase I [Methanosarcina mazei Go1] Length = 752 Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 415 EYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 E+ + ++ ++ + + + G+ L E GI ++E LA +L Sbjct: 672 EWQKTQKEEQAQQPKKEKP-KSIKDLEGVGKATAGKLEEAGITSVEALAEADPVELA 727 >gi|21227760|ref|NP_633682.1| methyl-accepting chemotaxis protein [Methanosarcina mazei Go1] gi|20906162|gb|AAM31354.1| methyl-accepting chemotaxis protein [Methanosarcina mazei Go1] Length = 665 Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 2/168 (1%) Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 N L + + GR +V E LA R + +T + + Sbjct: 469 NLLALNAAIEAARAGEYGRGFAVVADEVRKLAADSRKSTDEINEIVTNVQKETRKVTDAI 528 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGF--ADVEELACVKISEIASIEGFDEETA 406 ++ QA+N I + F A+++ LA + +I +IE ETA Sbjct: 529 NTADSQAKNGSKNIKQALNKSHEIVDAVATINFMLAELDRLAEEGLIKIENIEKSISETA 588 Query: 407 VEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALGEN 454 + A E ++ VS + ++ G+ + L EN Sbjct: 589 STAEENAASSEETSAAIEEQTAAMQQVSTSVQNVSGLARRTVDTLFEN 636 >gi|313127538|ref|YP_004037808.1| nusa family kh domain protein [Halogeometricum borinquense DSM 11551] gi|312293903|gb|ADQ68363.1| NusA family KH domain protein [Halogeometricum borinquense DSM 11551] Length = 139 Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 255 VGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE-DVGRIEVIVP 313 +G RG V AV ++ +++V + + FV + L PA V V + E D V V Sbjct: 47 IGPRGQHVHAVEEKIGR-SVELVEDADTTEAFVESMLAPAAVRHVTISEQDDRVAYVEVE 105 Query: 314 KEQLSLAIGRRGQNVRLASQLTGWT 338 +AIG+ G+N+ A L Sbjct: 106 NADRGVAIGKEGRNIETARTLAERH 130 >gi|167390223|ref|XP_001739253.1| coatomer beta subunit [Entamoeba dispar SAW760] gi|165897104|gb|EDR24370.1| coatomer beta subunit, putative [Entamoeba dispar SAW760] Length = 910 Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Query: 55 PETGDISLFRLLEVVEEVENYTCQ--ISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQ 112 G+I E+ ++ + + I+L+ ++ + ++I V+ + L + + A++ Sbjct: 342 RNAGEIVTALRKEIGKDDNEFVVEVLIALRKCKEINEGVEIDDVMFEALTTPELAKEAIE 401 Query: 113 SAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRV 149 + + + RE +R ++ V + Sbjct: 402 YIEYRLQGEQRENTVERLIDFIEEVSDNKTLRNVIWM 438 >gi|307189125|gb|EFN73581.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Camponotus floridanus] Length = 587 Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 20/149 (13%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E + E+ ++ SP+ A ++I Sbjct: 374 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIIGSPESQWKAQYLI 433 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 ++ IE++VP Q+ IG+ GQNVR ++TG I + ++ Sbjct: 434 FEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATP 493 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLV 377 + +++ ++ + +V Sbjct: 494 PSAEEETTVHIIGPFFSVQSAQRRIRAMV 522 >gi|170036665|ref|XP_001846183.1| igf2 mRNA binding protein [Culex quinquefasciatus] gi|167879496|gb|EDS42879.1| igf2 mRNA binding protein [Culex quinquefasciatus] Length = 520 Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 20/113 (17%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E + E+ +V +P+ A ++I Sbjct: 353 NAVGAIIGTKGSHIRNIIRFSGASVKIAPLEADKPLEQQTERKVTIVGTPEAQWKAQYLI 412 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDI 341 D+ +E++VP Q+ IG+ GQNVR ++TG I + Sbjct: 413 FEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSIIKL 465 >gi|91774093|ref|YP_566785.1| DNA-directed DNA polymerase [Methanococcoides burtonii DSM 6242] gi|91713108|gb|ABE53035.1| UmuC like DNA polymerase [Methanococcoides burtonii DSM 6242] Length = 364 Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 59/212 (27%), Gaps = 22/212 (10%) Query: 304 DVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFM 363 + G I RLA + D + + + Sbjct: 40 EEGGAVSTCNYVARDAGI-HSAMPCRLAKAV---KPDAVFLPVRKTFYSEVSERIMEIIR 95 Query: 364 QAINVDEIIAHLL-VAEGFADVEELACVKISEIASIEGFDEETAVEI------------Q 410 + D + L + E F +V + I + I ++ E+ + Sbjct: 96 SYADNDGELFEKLGIDEAFLEVTATSRGDIDKAQQIAQSIKDDVKELEGLTCSVGIGPNK 155 Query: 411 GRAREYLEGIDITLQKKIRELGVSEELCSIP-----GIDSKIKVALGENGIKTMEDLAGC 465 A+ IRE V L +P GI + L GI +EDLAG Sbjct: 156 IIAKMASSRQKPDGITVIREDEVDGFLRKMPVAKLWGIGKVTEEKLANMGIDIVEDLAGH 215 Query: 466 SVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQ 497 V +L+ G K K++ Sbjct: 216 DVQELISAFGKTRGTWLKMAASGIDDDPVKEK 247 >gi|284165727|ref|YP_003404006.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Haloterrigena turkmenica DSM 5511] gi|284015382|gb|ADB61333.1| poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit [Haloterrigena turkmenica DSM 5511] Length = 530 Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 14/119 (11%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREY------LEGI 420 D L + + + + S+ + DEE + +E + Sbjct: 392 PEDLADGSGLETDAESSTQAELDAETSDRHGEDRSDEEIVERGEDDVQEEPAEPGEMNVD 451 Query: 421 DITLQKKIRE--------LGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLL 471 +++ E +++L + G+ L E GI+T E L V +L Sbjct: 452 ADVVEEVTDEDVDAGSAIESETDDLTDLDGVGQAYADTLAEAGIETFEQLVDADVAELA 510 >gi|325286743|ref|YP_004262533.1| 30S ribosomal protein S2 [Cellulophaga lytica DSM 7489] gi|324322197|gb|ADY29662.1| ribosomal protein S2 [Cellulophaga lytica DSM 7489] Length = 340 Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 46/148 (31%) Query: 331 ASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACV 390 ++L G + T E ++ F M N D ++ + + V Sbjct: 155 MTRLPGALFIVDTMREHIAVKEALKLNIPIFAMVDTNSDPRPIDYIIPSNDDASKSIEAV 214 Query: 391 KISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVA 450 +I + + Q K +++L + GI KI Sbjct: 215 LSHVSEAIIEGLADRKSDKQAEKEGKDSTPKAKAAPKAEAKTATDDLTKVEGIGPKIAEI 274 Query: 451 LGENGIKTMEDLAGCSVDDLLGWSENKG 478 GIKT DLA SV+DL G Sbjct: 275 FQNEGIKTYADLAAKSVEDLSAILTAAG 302 >gi|257388970|ref|YP_003178743.1| hypothetical protein Hmuk_2931 [Halomicrobium mukohataei DSM 12286] gi|257171277|gb|ACV49036.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286] Length = 157 Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 10/119 (8%) Query: 367 NVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQ- 425 + V + E A S +D +TA E + + + D + Sbjct: 23 GNTPQDVDVTVEREPSTESEDAVKGTETDTSGATYDADTATESESASEQADADTDDESET 82 Query: 426 -------KKIRELGVSEE--LCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSE 475 + E V + + I G+ L GI T+ +LA D+L ++ Sbjct: 83 TVAAATPEPTDEPSVDNDAPVTEIKGVGPAYAERLENAGISTVSELAAADADELGEVTD 141 >gi|168007773|ref|XP_001756582.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692178|gb|EDQ78536.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1158 Score = 37.3 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 22/284 (7%) Query: 251 VGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEV 310 + A + R +R+Q++ L +K I+ D V +L L+ + G + V Sbjct: 495 LEAALADREARIQSLEKGLNGKKKFIIEMENDFKE-VRKSLFVMEGRVKDLEANEGALHV 553 Query: 311 IVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDE 370 + ++ L RG RL + +E + Q E Q + ++ Sbjct: 554 NMKDKEQEL----RGLFQRLEKMQSDCAAKDGKIKELQSSLQDAKRENQQLKAWRVEHEQ 609 Query: 371 II------AHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITL 424 L ++ ++ + ++ E+T IQ +++ + + Sbjct: 610 QREAQAVAMDQLNSKVLELTTANGQLESKKQQMMKQVKEQT-QRIQDLSQQASKQEQLVA 668 Query: 425 QKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLA---GCSVDDLLGWSENKGGNI 481 K++ G+ +L K+ E I M++L +L E Sbjct: 669 AKELEAQGLQNQLRGEQEKTLKLSEE-VEEKISQMDELIVYVEQLEQELAALQERVRSTE 727 Query: 482 EKFDGFLSSLGTPKD------QVESMIIHARYKMGWIEKEKVAD 519 L + + +VE + AR + W K K+ D Sbjct: 728 SDEHEQLKLHCSTLEEKIESHEVEMQNLRARLREEWETKSKLND 771 >gi|221058871|ref|XP_002260081.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193810154|emb|CAQ41348.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 703 Score = 37.3 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 364 QAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGR-AREYLEGIDI 422 ++++ + +LL E + +++ EI+ A E Sbjct: 398 DNNDMEKALPNLLFNENCESCRMNRAYSRRSLQKESRHEKKETEEIRNNVAEEEDLMKTY 457 Query: 423 TLQKKIRELGVSEELCSIPGIDSKIKVALGENG 455 ++K+++ V E L + I + I + L +N Sbjct: 458 EIEKELKVDSVEELLSNFVHISNAILLHLKKNK 490 >gi|56963113|ref|YP_174840.1| phage-related tail protein [Bacillus clausii KSM-K16] gi|56909352|dbj|BAD63879.1| phage-related tail protein [Bacillus clausii KSM-K16] Length = 1554 Score = 37.3 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 27/218 (12%) Query: 322 GRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGF 381 G + +AS LTG ++ T +D +N+ ++ + Q + + E+I AE Sbjct: 736 GSQEVTDEMASNLTGKFSEMGTMIKDELNK--NYTQSQQDLEKFLGQSEVITAEHQAEIQ 793 Query: 382 ADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI- 440 E+ ++S +EG + R + + +I++ + + ++ Sbjct: 794 KRYEDHYNARVSHTEEMEGRINDIVQTAADENRSITDAERAEIN-RIKDSMMEANVRAVA 852 Query: 441 PGIDSK--IKVAL-GENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG----- 492 G + I L ++ + A + D + E + G I+ + Sbjct: 853 EGSTEQKAILEQLKADSSVIN----AEQAADTVKKSIEARDGAIKAANERYDETVQWAIT 908 Query: 493 -------TPKDQVESMIIHARYKMGWIEKEKVADEEVQ 523 D+ + +I AR + E + E Sbjct: 909 QRDETGLITADEADQIIKEARRQR----DESITAAEDA 942 >gi|325336774|gb|ADZ13048.1| Ribosomal protein S1 [Riemerella anatipestifer RA-GD] Length = 603 Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+ ISL R +P++ +G V + R Q+ +K R + Sbjct: 82 IVDIDFKSEGVISLNEFR-YNPNLKVGDEVEVMVD----RREDKTGQLQLSHKKARTLKA 136 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE 169 + ++ + GE+++G VK G +IVD+ + + + Sbjct: 137 WDKVNQYHE-SGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQ 177 >gi|237737742|ref|ZP_04568223.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419622|gb|EEO34669.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 322 Score = 37.3 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 24/254 (9%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIG 94 + + + I+ +T V + V N + LK P + + Sbjct: 47 LIAVYQDKLAVRIPFEINIDKDT---------TVRDLVANKNEEEVLKTINKLLP-VQVN 96 Query: 95 GVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYGNV 154 ++ + ++ + + R Y + E K N+ Sbjct: 97 NYMTVKFGQVKLNVKNAKNIPETTVDNKRYIITSSLYSMYDSLYNE---QQNKNEVNENI 153 Query: 155 IVDL---GNSDGVIRRDETISRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKL 211 IVD+ +G RR + EN++ +K + + ++L ++ Sbjct: 154 IVDVLNANGINGYARR----TGENIKNKLGMKYNAANYEKNLEESYIIL----NDISIEK 205 Query: 212 FHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDSSIDPVGACVGMRGSRVQAVVTELRD 271 V ++ +++ V P + V + +ID G + VQ++ EL+ Sbjct: 206 AQDIVMQLNEKYFKIQQVPTIPTLANIVVVLGQEKNIDFTIEVAGENNATVQSISNELKR 265 Query: 272 EKIDIVVWSPDSAT 285 E V D Sbjct: 266 EGYRKVESEKDKIK 279 >gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum DSM 13514] gi|166218765|sp|A4WN87|RADA_PYRAR RecName: Full=DNA repair and recombination protein radA gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum DSM 13514] Length = 333 Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 18/79 (22%) Query: 432 GVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSL 491 ++ + G+ L E G T++D+A SV +L Sbjct: 22 SPDLDVEELEGVGKVTGAKLKEKGFYTVKDVAFASVKELAEIIG---------------- 65 Query: 492 GTPKDQVESMIIHARYKMG 510 +++ +I AR +G Sbjct: 66 --NEERALQIIESARKMLG 82 >gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134] gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134] Length = 1282 Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 19/143 (13%) Query: 376 LVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE 435 L +E +A + + +E D E + AR + +KI L Sbjct: 92 LRENSIDRIENIAHLTNLQYLDLEENDIEVIENLDHLARLEYLNLRGNAIEKIGNLNALT 151 Query: 436 ELC-------------SIPGIDSKIKVALGENGIKTMEDLAGCSV----DDLLGWSENKG 478 +L ++ + + L EN IK +E+LAG + D LG++ Sbjct: 152 QLVHLELSSNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLD--LGYNGFGK 209 Query: 479 GNIEKFDGFLSSLGTPKDQVESM 501 L L ++ ++ + Sbjct: 210 IEGLHNLPRLKQLELEENDIKKI 232 >gi|313205786|ref|YP_004044963.1| SSU ribosomal protein s1p [Riemerella anatipestifer DSM 15868] gi|312445102|gb|ADQ81457.1| SSU ribosomal protein S1P [Riemerella anatipestifer DSM 15868] gi|315022816|gb|EFT35840.1| 30S ribosomal protein S1 [Riemerella anatipestifer RA-YM] Length = 593 Score = 37.3 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 68 VVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAER 127 +V+ ISL R +P++ +G V + R Q+ +K R + Sbjct: 72 IVDIDFKSEGVISLNEFR-YNPNLKVGDEVEVMVD----RREDKTGQLQLSHKKARTLKA 126 Query: 128 DRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDE 169 + ++ + GE+++G VK G +IVD+ + + + Sbjct: 127 WDKVNQYHE-SGEVVNGFVKSRTKGGMIVDVFGIEAFLPGSQ 167 >gi|260893017|ref|YP_003239114.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii KC4] gi|260865158|gb|ACX52264.1| hydroxymethylbutenyl pyrophosphate reductase [Ammonifex degensii KC4] Length = 654 Score = 37.3 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 24/184 (13%) Query: 114 AKQVIIQKVREAERDRQYLEFKD------KVGEIISGTVKRVEYGNVIVDLG-NSDGVIR 166 + + +++RE + + + GEI+ GTV + G V+VD+G ++GVI Sbjct: 266 IIEEVEKRMREIGEMSAAEQMEAVGVKTFRGGEIVRGTVVEINQGEVLVDIGAKTEGVIP 325 Query: 167 RDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIY 220 E E ++ GD + ++ + + +R K Sbjct: 326 LRELCCCEVSSPHEVVKVGDEIDVFVVKAEDAEGRIILSKARADAIAAWKKLAE---AFA 382 Query: 221 NGIVQVKAVSRD---PGSRAKLAVFSSDS----SIDPVGACVGMRGSRVQAVVTELRDEK 273 NG V+ + R+ G + V + I V G +V+A V EL + Sbjct: 383 NGT-PVEGIVREVVKGGLIVDVGVRAFLPASLVDISYVENLSTYLGQKVRAKVIELDRSR 441 Query: 274 IDIV 277 +V Sbjct: 442 KKVV 445 >gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum] Length = 315 Score = 37.3 bits (85), Expect = 6.5, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 18/81 (22%) Query: 430 ELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLS 489 E+ ++ + G+ L E G T+ D+A SV +L Sbjct: 2 EITPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEIVG-------------- 47 Query: 490 SLGTPKDQVESMIIHARYKMG 510 +++ + ++ AR +G Sbjct: 48 ----NEERAQQIVEAARKMLG 64 >gi|300711894|ref|YP_003737708.1| hypothetical protein HacjB3_12675 [Halalkalicoccus jeotgali B3] gi|299125577|gb|ADJ15916.1| hypothetical protein HacjB3_12675 [Halalkalicoccus jeotgali B3] Length = 213 Score = 37.3 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 25/79 (31%) Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVAL 451 SE +E + E E + E E L I GI L Sbjct: 114 DSESEPMETVESEPVDETGTETEDADRDSHTGTDAAGPEAAEQEALREIKGIGPSYATKL 173 Query: 452 GENGIKTMEDLAGCSVDDL 470 E G+ ++ DLA +L Sbjct: 174 SEAGVDSVADLAAADAGEL 192 >gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus prevotii ACS-065-V-Col13] Length = 687 Score = 37.3 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 78/211 (36%), Gaps = 17/211 (8%) Query: 24 RDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKV 83 ++ ++ + DS++K + I V+ + +F ++ + +++ + Sbjct: 279 KEEFMNSLEDSLKKVYPKEIVKGTVIDVKDD------EIFVDIQFRADGIIKLDEMTEEE 332 Query: 84 ARDRDPSIDIGGVVSDP-LPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEII 142 +D S +IG + + D S ++V +V K + E++ Sbjct: 333 RKDPKSSFNIGDEIDVYVIKLDDGEGNVALSTRRVEGMRV----WKDLAE--KAENDELV 386 Query: 143 SGTVKRVEYGNVIVDLGNSDGVIRRDETISR--ENLRPGDRVKSYIYDVRREQRGPQVLL 200 G V G + V++ +G + + + +N + + V ++R +++L Sbjct: 387 HGEVTGFNKGGLTVNVDGVNGFVPASQIATYFVKNFKKFVGEDWDLKIVSIDERKNRLVL 446 Query: 201 SRTHPQFMVKLFHMEVPEIYNGIVQVKAVSR 231 SR + E+ G V V+R Sbjct: 447 SRKD--VVEGQLDELWDELEEGQVVTGKVAR 475 >gi|167630001|ref|YP_001680500.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium modesticaldum Ice1] gi|167592741|gb|ABZ84489.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Heliobacterium modesticaldum Ice1] Length = 665 Score = 37.3 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%) Query: 93 IGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAERDRQYLEFKDKVGEIISGTVKRVEYG 152 IG + + +D R +++V++++ + R + + E ++ G+ GTV+R+ Sbjct: 448 IGQTLRMRIMEIDTRRNNAVLSQKVVLEEEYKEARAKTWEEIEE--GQTRRGTVRRLTDF 505 Query: 153 NVIVDLGNSDGVIRRDETI------SRENLRPGDRVKSYIYDVRREQRGPQVLLSRTHPQ 206 VDLG DG++ E E ++ GD + Y+ V RE+ + L + P Sbjct: 506 GAFVDLGGVDGLLHVSEMSWGRIKHPSEVVKEGDVIDVYVLKVDREKEKVSLGLKQVLPN 565 >gi|146302822|ref|YP_001190138.1| transcription elongation factor NusA-like protein [Metallosphaera sedula DSM 5348] gi|145701072|gb|ABP94214.1| NusA family KH domain protein [Metallosphaera sedula DSM 5348] Length = 143 Score = 37.3 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ++V +S + + N + PA V V + + V V + ++AIG+ G+NV A Sbjct: 69 EVVAYSENLEDLIKNLMSPARVKSVKTIDSNSRKTVHVTVDPQDKAIAIGKAGRNVSRAK 128 Query: 333 QLTGWTIDI 341 + +DI Sbjct: 129 IILKRYMDI 137 >gi|229170735|ref|ZP_04298366.1| DNA-damage repair protein [Bacillus cereus AH621] gi|228612740|gb|EEK69934.1| DNA-damage repair protein [Bacillus cereus AH621] Length = 421 Score = 37.3 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 19/195 (9%) Query: 287 VINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRL-----------ASQLT 335 + L P V+ + +++ A+G + RL + + Sbjct: 27 IKMGLDPLHTKLAVVGDVNRSGSIVLAATPPLKALGVKKM-ARLYEIPRRKDILVVNPIM 85 Query: 336 GWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEI 395 G I + + Q+ + +D + L A+ + +I + Sbjct: 86 GTYIKCSNYITKLALQYVPIEDFHQYSIDEFFMDITDSIHLFAQDPYEFAMKFKREIYDH 145 Query: 396 ASIEGFDEETAVEIQGR-AREYLEGIDITLQKKIRELGVSEELCSIP------GIDSKIK 448 +E + + A + + + V +L SI GI K + Sbjct: 146 TRVECTIGIAPNPLMSKVALDIDAKKNTDGIAFWKYEDVPTKLWSIRPLNKFWGISHKTE 205 Query: 449 VALGENGIKTMEDLA 463 L GI ++EDLA Sbjct: 206 EKLNRKGIHSIEDLA 220 >gi|260426251|ref|ZP_05780230.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Citreicella sp. SE45] gi|260420743|gb|EEX13994.1| xanthine dehydrogenase, molybdenum binding subunit apoprotein [Citreicella sp. SE45] Length = 763 Score = 37.3 bits (85), Expect = 7.3, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Query: 15 AVAYEKSIDRDVVLS-VMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVE 73 A+A EK R+ +L+ + D IQ ARS +EI+ ETG + + VV++ Sbjct: 586 ALAREKG--REDLLTWSVRDKIQ--ARSYPNGAHFAEIEIDRETGVAEVVKY-TVVDDFG 640 Query: 74 N 74 N Sbjct: 641 N 641 >gi|189201225|ref|XP_001936949.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187984048|gb|EDU49536.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1497 Score = 36.9 bits (84), Expect = 7.4, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 7/140 (5%) Query: 262 VQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDE------DVGRIEVIVPKE 315 + +V ++ + + V A P + L E ++V VP Sbjct: 360 INEIVRDINRRSKAKLEYKQAPGGLVFEATGPVEAVRQALKEVANEVGSKQSVDVPVPAS 419 Query: 316 QLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHL 375 + IGR+G ++ S+ TG I++ + E + N + + Sbjct: 420 VRAHIIGRQGSKIQEISKRTGARINV-PKPEAGEDEDTIINVHIEGNALTAEMARREIDA 478 Query: 376 LVAEGFADVEELACVKISEI 395 +V E + V +E Sbjct: 479 IVNERTSTVNLRLKDIPAEF 498 >gi|322792902|gb|EFZ16735.1| hypothetical protein SINV_14612 [Solenopsis invicta] Length = 555 Score = 36.9 bits (84), Expect = 7.7, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 20/149 (13%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E + E+ +V SP+ A ++I Sbjct: 339 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWKAQYLI 398 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 ++ IE++VP Q+ IG+ GQNVR ++TG I + ++ Sbjct: 399 FEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATP 458 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLV 377 + +++ ++ + +V Sbjct: 459 PSAEEETTVHIIGPFFSVQSAQRRIRAMV 487 >gi|299820982|ref|ZP_07052871.1| DNA-directed RNA polymerase subunit alpha [Listeria grayi DSM 20601] gi|299818003|gb|EFI85238.1| DNA-directed RNA polymerase subunit alpha [Listeria grayi DSM 20601] Length = 314 Score = 36.9 bits (84), Expect = 8.0, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 12/234 (5%) Query: 269 LRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNV 328 L +K+ + ++S D T I+ P +VT ++ D +E++ P ++ +V Sbjct: 80 LNIKKLALKIYSDDEKTLEIDVQGPGVVTAGDINYDSD-VEILNPDLHIATLSDNAKFHV 138 Query: 329 RLASQ----LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADV 384 RL + T ++ + + + + DV Sbjct: 139 RLNATRGRGYTPADLNKHENMPIGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLSFDV 198 Query: 385 EELACVKISEI----ASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI 440 + E A I V + A++ I+ K + L ++ E + Sbjct: 199 LTDGSISPEEAVSLGAKILSEHLSIFVNLTDEAQKAEIMIEKEESHKEKVLEMTIEELDL 258 Query: 441 PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 + L GI T+++LA S DD++ ++E+ L+ LG Sbjct: 259 ---SVRSYNCLKRAGINTVQELADKSEDDMMKVRNLGRKSLEEVKVKLADLGLS 309 >gi|119872000|ref|YP_930007.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184] gi|119673408|gb|ABL87664.1| Rad51-like protein [Pyrobaculum islandicum DSM 4184] Length = 311 Score = 36.9 bits (84), Expect = 8.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 436 ELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +L S+ G+ K L E GI ++E L+ + ++L ++ L +G Sbjct: 7 DLSSLEGVGPKTFEKLMELGITSLEHLSEFTAEELAEAGIEYERAVKLLQQVLQKVG 63 >gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis] gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis] Length = 267 Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 3 SANRLELLQIADAVAYEK----SIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETG 58 SA+R + Q ++ K I + + ++ YG + + RV I+ ETG Sbjct: 24 SASRPSMFQAIRFMSSSKVFVGGISYQTDDTSLREAFG-----KYGEVIEARVIIDRETG 78 >gi|149911156|ref|ZP_01899781.1| electron transfer flavoprotein beta-subunit [Moritella sp. PE36] gi|149805757|gb|EDM65754.1| electron transfer flavoprotein beta-subunit [Moritella sp. PE36] Length = 250 Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 35 IQKAARSLYGTMSDIRVEINPETGDISLFRLLEVVEEVENYTCQISLKVARDRDPSIDIG 94 I A + + ++RV+ + ETG I + V+ N C+I+++ A Sbjct: 3 ILVAVKRVVDHKVNVRVKTD-ETG-IETANVKMVI----NPFCEIAIEQAVRFKEQGSAD 56 Query: 95 GVVSDPLPPMD 105 VV + P + Sbjct: 57 EVVLVCIGPKE 67 >gi|322790963|gb|EFZ15611.1| hypothetical protein SINV_02512 [Solenopsis invicta] Length = 341 Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS-IPGIDSKIKVAL 451 E + G E+ A +I E+L+ + + E VS L + + GI L Sbjct: 59 KEAKKLPGIGEKIAKKI----DEFLQTGKLQKLEDKDETNVSISLLARVSGIGPAKAKEL 114 Query: 452 GENGIKTMEDL 462 E GIKT+EDL Sbjct: 115 VEAGIKTLEDL 125 >gi|161527751|ref|YP_001581577.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339052|gb|ABX12139.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus SCM1] Length = 709 Score = 36.9 bits (84), Expect = 8.3, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%) Query: 384 VEELACVKISEIASIEGFDEETAVE--------IQGRAR---EYLEGIDITLQKKIRELG 432 + E + +S+ IE D E ++ A+ ++ ++ G Sbjct: 586 ITESTELNLSDSLGIESGDMHRMTETGNWLCYCLREIAKHVERADLLEELGDLRRRISYG 645 Query: 433 VSEELCSI---PGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWS 474 + EEL + GI L ++GIK ++DLA V+ L Sbjct: 646 IREELLDLVRVKGIGRVRARILFKHGIKNLDDLAKIPVNKLAEID 690 >gi|198476743|ref|XP_001357465.2| GA17619 [Drosophila pseudoobscura pseudoobscura] gi|198137832|gb|EAL34535.2| GA17619 [Drosophila pseudoobscura pseudoobscura] Length = 5605 Score = 36.9 bits (84), Expect = 8.4, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 46/168 (27%), Gaps = 16/168 (9%) Query: 334 LTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVA-EGFADVEELACVKI 392 +T ++ + + + + + E ++ +A Sbjct: 3613 MTDESVIKKEATPATTPVKDEVKAEQESPEKKKETPESPTEASAKKSEESETASVAEETE 3672 Query: 393 SEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSKIKVALG 452 + + I+ D +T +A E ++ + + ++ + D Sbjct: 3673 EDTSKIKDEDTDTV-----KAESSPEKEVLSADAEEKSSEAEKDASAAEVTDES------ 3721 Query: 453 ENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVES 500 K+ EDLA VD+ + + + + E Sbjct: 3722 ----KSSEDLAKMEVDEPIAENGEEKEETTSPEVEAEDASIESTSAEE 3765 >gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5] gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5] Length = 315 Score = 36.9 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 17/79 (21%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 EEL GI L GI+T+EDL + ++L + G Sbjct: 4 PIEELGKEEGIGRVTISRLKSAGIETVEDLVLYNPEELEELA-----------------G 46 Query: 493 TPKDQVESMIIHARYKMGW 511 ++ ++ AR GW Sbjct: 47 IDFERALRLVRTARRLAGW 65 >gi|330833904|ref|YP_004408632.1| transcription elongation factor NusA-like protein [Metallosphaera cuprina Ar-4] gi|329566043|gb|AEB94148.1| transcription elongation factor NusA-like protein [Metallosphaera cuprina Ar-4] Length = 143 Score = 36.9 bits (84), Expect = 8.5, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 275 DIVVWSPDSATFVINALRPAIVTKVVLDEDV--GRIEVIVPKEQLSLAIGRRGQNVRLAS 332 ++V +S + V N + PA V V + + V V + ++AIG+ G+NV A Sbjct: 69 EVVAYSDNLEDLVKNLMSPARVRSVKTIDSNSRKTVHVSVDPQDKAIAIGKAGRNVSRAK 128 Query: 333 QLTGWTIDI 341 + +DI Sbjct: 129 IILKRYMDI 137 >gi|75911030|ref|YP_325326.1| beta-ketoacyl synthase [Anabaena variabilis ATCC 29413] gi|75704755|gb|ABA24431.1| Beta-ketoacyl synthase [Anabaena variabilis ATCC 29413] Length = 1646 Score = 36.9 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 30/166 (18%) Query: 327 NVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEE 386 +RLA +TG + I + T+ I Sbjct: 1285 AMRLARTITGRNLIAIFSGGYHGILDEVIVRGTKKLRSIPAAPGIPQE------------ 1332 Query: 387 LACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSIPGIDSK 446 K+ I I+ + ++ RA E + ++Q + E E L + + Sbjct: 1333 ----KVDNILVIDYDAPDALDILKSRADELAGVMVESVQSRRPEYQPREFLQQLRQFTEQ 1388 Query: 447 IKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 ED+A D+++ G + G + + Sbjct: 1389 -------------EDIA-LIFDEIVTGFRIHPGGAQAHFGIKADIA 1420 >gi|160944373|ref|ZP_02091601.1| hypothetical protein FAEPRAM212_01883 [Faecalibacterium prausnitzii M21/2] gi|158444155|gb|EDP21159.1| hypothetical protein FAEPRAM212_01883 [Faecalibacterium prausnitzii M21/2] Length = 1010 Score = 36.9 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 433 VSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLG 492 +S+ L + + ++ L N I T+ L CS +L GG Sbjct: 1 MSDLLLASTNLSTRAINILARNNILTLSQLKECSEKELRSMRGL-GGKTLDEIVTFRDNP 59 Query: 493 TPKDQVESMIIHA 505 ++ + ++A Sbjct: 60 LDEETADET-MNA 71 >gi|269216200|ref|ZP_06160054.1| DNA-directed RNA polymerase, beta subunit [Slackia exigua ATCC 700122] gi|269130459|gb|EEZ61537.1| DNA-directed RNA polymerase, beta subunit [Slackia exigua ATCC 700122] Length = 1458 Score = 36.9 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 5/115 (4%) Query: 385 EELACVKISEIASIEGF-----DEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCS 439 E+L +E+ IE D A + KK+ + L Sbjct: 1251 EDLPESAPAELREIEDLLPQPQDWALDEGYGAYANYFGANGYRGHGKKLSDEDARLYLYD 1310 Query: 440 IPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTP 494 G+ + E GI T+ DL G + D+LL +E+ L Sbjct: 1311 DLGVSQRWANKFSEAGIDTVGDLVGYTEDELLRIEGIGAKALEELKAGLEEHELS 1365 >gi|332025247|gb|EGI65421.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Acromyrmex echinatior] Length = 568 Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 20/149 (13%) Query: 249 DPVGACVGMRGSRVQAVVT-----------------ELRDEKIDIVVWSPD---SATFVI 288 + VGA +G +GS ++ ++ E + E+ +V SP+ A ++I Sbjct: 348 NSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWKAQYLI 407 Query: 289 NALRPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDS 348 ++ IE++VP Q+ IG+ GQNVR ++TG I + ++ Sbjct: 408 FEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATP 467 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLV 377 + +++ ++ + +V Sbjct: 468 PSAEEETTVHIIGPFFSVQSAQRRIRAMV 496 >gi|255084866|ref|XP_002504864.1| predicted protein [Micromonas sp. RCC299] gi|226520133|gb|ACO66122.1| predicted protein [Micromonas sp. RCC299] Length = 874 Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 15/84 (17%) Query: 442 GIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGG----NIEKFDGFLSSLGTPKDQ 497 G+ K L G EDL +D+L GW E + K +G+ +L +D+ Sbjct: 323 GMPKKTA--LARAG---REDLIE-RIDELGGWYEAAAQLGLRSNRKPNGYWENLDFLRDE 376 Query: 498 VESMIIHARYKMGWIEKEKVADEE 521 + +I W ++E E Sbjct: 377 LLQLI-----YAFWFQEEDEDTGE 395 >gi|225028131|ref|ZP_03717323.1| hypothetical protein EUBHAL_02401 [Eubacterium hallii DSM 3353] gi|224954601|gb|EEG35810.1| hypothetical protein EUBHAL_02401 [Eubacterium hallii DSM 3353] Length = 378 Score = 36.5 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 29/189 (15%) Query: 292 RPAIVTKVVLDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTG---WTIDIITEEEDS 348 P ++ +D G+ + ++ L + I + T+ Sbjct: 169 GPCTSYELADHDDSHVAFC-----------GKDIETLKYIKSLLETDYYHISLSTDVVGV 217 Query: 349 INRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVE 408 N A+ + E + ++ + L + E+ + Sbjct: 218 ECAVAMKNAYALGVSLAVGLAEKRDGKIGSQHYNSQAALFGQSVKEMTKLLELIGGKPEN 277 Query: 409 IQGRAREYLEGIDITLQKKI-----RELGVSEELCSIPGIDSKIKV----------ALGE 453 I A + I +KI R L E + + G+ + V L E Sbjct: 278 IIHGAGDLYVTIFGGRTRKIGTLLGRGLSFEEAMAELQGVTLESIVISTRTARAVRKLAE 337 Query: 454 NGIKTMEDL 462 GI ++ED Sbjct: 338 RGIVSLEDF 346 >gi|307354072|ref|YP_003895123.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571] gi|307157305|gb|ADN36685.1| DNA topoisomerase I [Methanoplanus petrolearius DSM 11571] Length = 932 Score = 36.5 bits (83), Expect = 9.8, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 13/212 (6%) Query: 260 SRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVVLDEDVGRIEVIVPKEQLSL 319 S+V + E + ++ + + + + ++ GR V Sbjct: 708 SKVTGISKE---DSEKLIREADEVLELLRKRSELKKFVRKIIPPKRGRSHAKVLNMFFDA 764 Query: 320 AIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAE 379 I R A + T + + EE +S++ + + ++ V + Sbjct: 765 GIVDMESLAR-ADKKTLEKMKLSAEEAESLSHEAR-LVYNKALLKEYGVPAVSLKKYFDA 822 Query: 380 GFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSE---E 436 GF E+ + + +++ G + +T A E + L +K+ + + E Sbjct: 823 GFVTPEDFCYIHPAYLSAKTGLNIDTV---YKHAAIVCEATGVRLPEKVSKKELESGRIE 879 Query: 437 LCSIPGIDSKIKVALGENGIKTMEDLAGCSVD 468 L SI G+ + L GI + + L CS D Sbjct: 880 LLSIEGLGEAMLEKLYMAGIVSRKKL--CSAD 909 >gi|154413466|ref|XP_001579763.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] gi|121913973|gb|EAY18777.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] Length = 857 Score = 36.5 bits (83), Expect = 9.8, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 20/182 (10%) Query: 340 DIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIE 399 +I D F + ++ E+ + G + + I EI S+ Sbjct: 655 HVINLITDKTQEDLRRMIIQSFNGKKLSQSEMSLFERIYAGCVLEKLIDEHSIVEIESMF 714 Query: 400 GFDEETAVEIQGRAREYLEGIDITLQK--------------KIRELGVSEELCSI---PG 442 D T +Q + Y ++ K E GV +EL + P Sbjct: 715 KIDRGTIQILQTSSGSYAGQATKFCEEMDYSILAAALVRFRKRLEFGVKDELIELMEIPS 774 Query: 443 IDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPK---DQVE 499 I +I L N IKT D+ S DL + G + + + Sbjct: 775 ITREIARDLYNNDIKTTIDICEMSRRDLYHIVKKAKGGFGSGLNDNDIKSISRSIKSEAK 834 Query: 500 SM 501 + Sbjct: 835 KL 836 >gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide synthase [NAD+] gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429] Length = 662 Score = 36.5 bits (83), Expect = 9.9, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 15/189 (7%) Query: 332 SQLTGWTIDIITEEEDSINRQKDFNERTQFFMQAINVDEIIAHLLVAEGFADVEELACVK 391 +Q++G I + + I + K I + ++AE F ++E+L+ Sbjct: 478 AQISGLGQKSIAKILEQIEKSKKTPLNRVIVGLGIPMVGEKTSKILAEKFKNIEKLSSAT 537 Query: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELGVSEELC---SIPGIDSKIK 448 E+ IE E A I + I KK +++ + G+ I Sbjct: 538 YDELIKIENIGPEIAKSIVTYFQNEKTKEIINKLKKAGVNLEEKDVKKSDKLKGLTFAIT 597 Query: 449 VALGENGIKTMEDLAGCSVDDLLGWSENKGGNIEKFDGFLSSLGTPKDQVESMIIHA-RY 507 L T E ++ E GG + ++ ++ S + A R Sbjct: 598 GKLKS---YTRE--------EIKKIIEENGGKVSNSVSSKTNFLIAGEEPGSKLEKAKRL 646 Query: 508 KMGWIEKEK 516 + I +E Sbjct: 647 NIKIISEED 655 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.141 0.387 Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,818,548,202 Number of Sequences: 14124377 Number of extensions: 260959840 Number of successful extensions: 1094481 Number of sequences better than 10.0: 4303 Number of HSP's better than 10.0 without gapping: 2446 Number of HSP's successfully gapped in prelim test: 1857 Number of HSP's that attempted gapping in prelim test: 1047211 Number of HSP's gapped (non-prelim): 30554 length of query: 526 length of database: 4,842,793,630 effective HSP length: 144 effective length of query: 382 effective length of database: 2,808,883,342 effective search space: 1072993436644 effective search space used: 1072993436644 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 84 (36.9 bits)