RPSBLAST alignment of GI: 254780788 and protein with PDBid: 1hh2
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A Length = 344
Score = 412 bits (1061), Expect = e-116
Identities = 141/341 (41%), Positives = 225/341 (65%), Gaps = 1/341 (0%)
Query: 7 LELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDISLFRLL 66
+ LL+ D + EK I ++ V+ ++ ++ A R +G ++ V I+ TG+I +++LL
Sbjct: 3 IGLLEALDQLEEEKGISKEEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLL 62
Query: 67 EVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQKVREAE 126
EVVEEVE+ QISL+ A+ DP ++G +V L +FGR+A Q+AKQV+IQ++RE E
Sbjct: 63 EVVEEVEDPATQISLEEAKKIDPLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELE 122
Query: 127 RDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGDRVKSYI 186
+++Q+ ++ + G + + V RV + +G + + + E I E ++ GD VK YI
Sbjct: 123 KEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPGEEIKAGDLVKVYI 182
Query: 187 YDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLAVFSSDS 246
DV + +GP++L+SR P+F++ L +E+PE+ NGIV++KA++R+PG R K+AV S+D
Sbjct: 183 IDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDP 242
Query: 247 SIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKV-VLDEDV 305
++DP+GAC+G GSR+ A++ EL+ EK+D++ WS D + NAL PA V +V +LD++
Sbjct: 243 NVDPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKEN 302
Query: 306 GRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEE 346
V+VP QLSLAIG+ GQN RLA++LTGW IDI
Sbjct: 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPIMN 343