BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] (526 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/526 (100%), Positives = 526/526 (100%) Query: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI Sbjct: 1 MVSANRLELLQIADAVAYEKSIDRDVVLSVMADSIQKAARSLYGTMSDIRVEINPETGDI 60 Query: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ Sbjct: 61 SLFRLLEVVEEVENYTCQISLKVARDRDPSIDIGGVVSDPLPPMDFGRVAVQSAKQVIIQ 120 Query: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD Sbjct: 121 KVREAERDRQYLEFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRPGD 180 Query: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA Sbjct: 181 RVKSYIYDVRREQRGPQVLLSRTHPQFMVKLFHMEVPEIYNGIVQVKAVSRDPGSRAKLA 240 Query: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV Sbjct: 241 VFSSDSSIDPVGACVGMRGSRVQAVVTELRDEKIDIVVWSPDSATFVINALRPAIVTKVV 300 Query: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ Sbjct: 301 LDEDVGRIEVIVPKEQLSLAIGRRGQNVRLASQLTGWTIDIITEEEDSINRQKDFNERTQ 360 Query: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI Sbjct: 361 FFMQAINVDEIIAHLLVAEGFADVEELACVKISEIASIEGFDEETAVEIQGRAREYLEGI 420 Query: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN Sbjct: 421 DITLQKKIRELGVSEELCSIPGIDSKIKVALGENGIKTMEDLAGCSVDDLLGWSENKGGN 480 Query: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS Sbjct: 481 IEKFDGFLSSLGTPKDQVESMIIHARYKMGWIEKEKVADEEVQDAS 526 >gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] Length = 576 Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 18/126 (14%) Query: 77 CQISLKVARDRDPSIDIGGVVSDP----LPPMDFGRVAVQSAKQVIIQKVREAERDRQYL 132 QI ++ RD P ++ +P + MD R + +++ ++++ R +R Sbjct: 140 SQIDIRPVRDVTP------LMHEPQLFEILKMDKRRGNIVVSRRAVLEESRAEQRSEIVQ 193 Query: 133 EFKDKVGEIISGTVKRVEYGNVIVDLGNSDGVIRRDETISRENLRP------GDRVKSYI 186 + ++ G++I GTVK + V VDL DG++ + L P G +VK I Sbjct: 194 KLEE--GQVIEGTVKNITDYGVFVDLSGVDGLLHVTDIAWHRILHPSKVLSIGQQVKVKI 251 Query: 187 YDVRRE 192 + +E Sbjct: 252 IRINQE 257 >gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62] Length = 397 Score = 24.3 bits (51), Expect = 5.3, Method: Compositional matrix adjust. Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 417 LEGIDITLQKKIRELGVSEELCSIPGI 443 L +D L+K++ + EE+C++ G Sbjct: 189 LNPVDFLLEKQLDTASLGEEICNLKGF 215 >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Query: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI--------------PGIDSKIKV 449 ++ V +QG E LE +L+ + E G+ E+ ++ PGI S + Sbjct: 277 QSNVNLQGITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVI 336 Query: 450 ALGENGIKTMEDLAG 464 L ++ ++M L+ Sbjct: 337 GLADDIARSMSSLSA 351 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.136 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,874 Number of Sequences: 1233 Number of extensions: 13332 Number of successful extensions: 49 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 13 length of query: 526 length of database: 328,796 effective HSP length: 78 effective length of query: 448 effective length of database: 232,622 effective search space: 104214656 effective search space used: 104214656 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)