HHsearch alignment for GI: 254780789 and conserved domain: cd01734

>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.

Probab=99.89  E-value=3.8e-23  Score=164.95  Aligned_cols=82  Identities=29%  Similarity=0.502  Sum_probs=75.9

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHH
Q ss_conf             07999727887744578999987105688987226688078999985126975999963554567777269976887651
Q gi|254780789|r   90 YRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLS  169 (192)
Q Consensus        90 Y~LEVSSPGidRpL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~k  169 (192)
T Consensus         1 Y~LEVSSPGldRpL~~~~~f~~~~G~~v~v~l~~~~~g~k~f~G~L~~v~~~~i~l~~~~~~----~~~~~~i~~~~I~k   76 (83)
T cd01734           1 YFLEVSSPGAERPLKKEADFERAVGKYVHVKLYQPIDGQKEFEGTLLGVDDDTVTLEVDIKT----RGKTVEIPLDKIAK   76 (83)
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEECCC----CCEEEEEEHHHHCE
T ss_conf             98998489989867899999985798799999150189189999999883999999995277----87899974698214


Q ss_pred             CCEECC
Q ss_conf             725046
Q gi|254780789|r  170 ARLIVT  175 (192)
Q Consensus       170 AkLv~~  175 (192)
T Consensus        77 ArL~~~   82 (83)
T cd01734          77 ARLAPE   82 (83)
T ss_pred             EEEEEE
T ss_conf             789788