Query gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 192
No_of_seqs 121 out of 1003
Neff 5.7
Searched_HMMs 13730
Date Wed Jun 1 06:28:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780789.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ib8a2 d.52.4.1 (A:1-90) Hypo 99.9 3.2E-23 2.3E-27 162.6 10.4 80 19-100 8-90 (90)
2 d1ib8a1 b.38.2.1 (A:91-164) Hy 99.5 7.2E-15 5.3E-19 110.4 6.4 71 101-175 1-71 (74)
3 d1ycya1 b.38.1.4 (A:5-70) Hypo 84.4 0.77 5.6E-05 22.9 4.8 58 106-168 4-61 (66)
4 d1n9ra_ b.38.1.1 (A:) Small nu 78.4 1.1 7.9E-05 22.0 3.8 35 110-147 2-37 (68)
5 d1mgqa_ b.38.1.1 (A:) Archaeal 78.0 1.9 0.00014 20.4 5.0 42 99-147 4-46 (74)
6 d1h641_ b.38.1.1 (1:) Archaeal 77.0 1 7.5E-05 22.1 3.3 41 100-147 1-42 (71)
7 d1nz9a_ b.34.5.4 (A:) N-utiliz 73.9 2.2 0.00016 20.1 4.3 50 113-170 7-58 (58)
8 d1ljoa_ b.38.1.1 (A:) Archaeal 73.8 1.7 0.00012 20.7 3.8 38 108-148 9-47 (75)
9 d1i4k1_ b.38.1.1 (1:) Archaeal 72.8 2 0.00015 20.3 3.9 37 107-147 6-43 (72)
10 d1i8fa_ b.38.1.1 (A:) Archaeal 71.1 2.3 0.00017 19.9 3.9 38 107-148 5-43 (71)
11 d1biaa2 b.34.1.1 (A:271-317) B 70.6 3.2 0.00023 19.1 4.5 35 112-151 1-35 (47)
12 d1d3bb_ b.38.1.1 (B:) B core S 69.1 2.6 0.00019 19.6 3.8 35 109-147 3-38 (81)
13 d1d3ba_ b.38.1.1 (A:) D3 core 68.3 2.7 0.0002 19.4 3.8 35 109-147 7-42 (72)
14 d1m5q1_ b.38.1.1 (1:) Sm-Like 63.9 3.5 0.00026 18.8 3.7 61 107-172 3-64 (127)
15 d1th7a1 b.38.1.1 (A:3-78) Arch 61.5 4.7 0.00035 17.9 6.3 37 107-147 10-47 (76)
16 d1b34a_ b.38.1.1 (A:) D1 core 57.1 4.6 0.00034 18.0 3.3 37 107-147 4-41 (80)
17 d2fwka1 b.38.1.1 (A:24-115) U6 54.2 3.5 0.00025 18.8 2.3 34 109-146 10-44 (92)
18 d1nppa2 b.34.5.4 (A:191-248) N 39.6 11 0.00077 15.8 3.5 49 113-169 7-57 (58)
19 d1zq1a1 b.38.3.1 (A:2-75) Glut 34.0 13 0.00095 15.2 5.6 54 112-173 12-69 (74)
20 d2f5ga1 d.58.57.1 (A:2-131) Pu 26.0 18 0.0013 14.4 8.4 102 6-115 17-126 (130)
21 d1r5pa_ c.47.1.15 (A:) Circadi 24.4 19 0.0014 14.2 3.7 43 51-100 2-44 (90)
22 d2bu1a1 d.85.1.1 (A:1-129) MS2 23.7 13 0.00095 15.2 1.1 26 64-89 96-121 (129)
23 d1h9aa1 c.2.1.3 (A:1-181,A:413 22.9 20 0.0015 14.0 3.9 34 52-86 141-174 (195)
24 d1b24a2 d.95.2.1 (A:100-179) D 22.9 11 0.00083 15.6 0.7 35 65-99 32-71 (80)
25 d1utya_ b.147.1.1 (A:) Nonstru 22.3 8.4 0.00061 16.4 -0.1 36 68-103 15-62 (153)
26 d1vlfn1 b.3.5.1 (N:196-274) Tr 21.6 17 0.0012 14.5 1.4 21 80-100 40-60 (79)
27 d3pmga4 d.129.2.1 (A:421-561) 21.0 22 0.0016 13.7 4.0 17 64-80 12-28 (141)
28 d1ynha1 d.126.1.7 (A:3-441) Su 20.8 14 0.001 15.0 0.9 14 179-192 351-364 (439)
29 d2vjva1 d.58.57.1 (A:6-130) IS 20.5 23 0.0017 13.7 8.9 98 6-111 17-124 (125)
No 1
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.89 E-value=3.2e-23 Score=162.61 Aligned_cols=80 Identities=35% Similarity=0.680 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEE
Q ss_conf 12799999999999974797799999954-99868999996587787899999999998752021--1356765079997
Q gi|254780789|r 19 MGLAGDISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVERDDGNMTLRDCEELSQAISPILDV--ENIIEGHYRLEVS 95 (192)
Q Consensus 19 ~~i~~~i~~li~p~v~~lG~eLv~v~~~~-~~~~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~--~d~i~~~Y~LEVS 95 (192)
..+.++++++++|+++ +||+||+|++.+ +++++||||||+++| |++|||+.+||.|++.||+ +|+++++|+||||
T Consensus 8 ~~i~e~i~~li~pvv~-~G~eL~~ve~~~~~~~~~l~I~ID~~~g-v~iddC~~vSr~is~~LD~~e~d~i~~~Y~LEVS 85 (90)
T d1ib8a2 8 ATIVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTIKPDPFPEQYFLEIT 85 (90)
T ss_dssp HHHHHHHHHHHHHHHC-SSSEEEEEEEEEETTEEEEEEEEECSSC-CCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEEEEECCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
T ss_conf 9999999999999986-7988999999918997799999978999-6799999999999998654555678988499964
Q ss_pred ECCCC
Q ss_conf 27887
Q gi|254780789|r 96 SPGID 100 (192)
Q Consensus 96 SPGid 100 (192)
|||+|
T Consensus 86 SPGld 90 (90)
T d1ib8a2 86 SPGLE 90 (90)
T ss_dssp CCSSS
T ss_pred CCCCC
T ss_conf 89999
No 2
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.52 E-value=7.2e-15 Score=110.43 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEECC
Q ss_conf 744578999987105688987226688078999985126975999963554567777269976887651725046
Q gi|254780789|r 101 RPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIVT 175 (192)
Q Consensus 101 RpL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv~~ 175 (192)
|||++++||.+|+|+.|+|+|+.|++|+++|+|.|.+++++.++|.++++. .+.+++|||++|++|||++.
T Consensus 1 RpL~~~~~f~r~~G~~v~v~l~~p~~g~k~f~G~L~~~~~~~i~l~~~~~~----~~~~~~i~~~~I~kArL~ve 71 (74)
T d1ib8a1 1 RPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKT----RKKTVQIPYSLVSKARLAVK 71 (74)
T ss_dssp SCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSS----CEEEEEECSSCCSSCEEECS
T ss_pred CCCCCHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCC----CCEEEEECHHHHEEEEEEEE
T ss_conf 996878999985799899999643399517999997462875999991576----42899982899102899999
No 3
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=84.43 E-value=0.77 Score=22.89 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=38.7
Q ss_pred HHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEHHHHH
Q ss_conf 899998710568898722668807899998512697599996355456777726997688765
Q gi|254780789|r 106 KSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLL 168 (192)
Q Consensus 106 ~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~ 168 (192)
.+-.++|.|++|.|. +++...|.|+|..++++.+.+..--... ....+.+-+..++|.
T Consensus 4 dktL~~WKg~kvAv~----vgsehSFtGiledFDeEviLL~dV~D~~-GNk~k~llv~idD~n 61 (66)
T d1ycya1 4 EKVLKEWKGHKVAVS----VGGDHSFTGTLEDFDEEVILLKDVVDVI-GNRGKQMLIGLEDIN 61 (66)
T ss_dssp HHHHHHHTTSEEEEE----EC----CEEEEEEECSSEEEEEEEEETT-EEEEEEEEEEGGGEE
T ss_pred HHHHHHHCCCEEEEE----ECCCCEEEEEHHHCCCCEEEEHHHHHHH-CCCCCEEEEEECCCE
T ss_conf 879998479579999----6684136777544586368600467884-643041388853621
No 4
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=78.38 E-value=1.1 Score=21.95 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=27.2
Q ss_pred HHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 98710568898722668807899998512697-599996
Q gi|254780789|r 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 110 ~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
+.++|+.|.|+|+ +|...|.|+|.++|+. .++|..
T Consensus 2 ~~~~~~~V~V~Lk---~~~~~~~G~L~~~D~~mNlvL~~ 37 (68)
T d1n9ra_ 2 KGLVNHRVGVKLK---FNSTEYRGTLVSTDNYFNLQLNE 37 (68)
T ss_dssp GGGTTSEEEEEES---STTEEEEEEEEECCTTTCEEEEE
T ss_pred HHHCCCEEEEEEE---CCCEEEEEEEEEECCCCCEEEEE
T ss_conf 2477987999997---49999999999997757369961
No 5
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=78.03 E-value=1.9 Score=20.38 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 8774457899998710568898722668807899998512697-599996
Q gi|254780789|r 99 IDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 99 idRpL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
+.+|+.. .++++|+.|.|++++ .+.|.|+|.++|.. .+.|..
T Consensus 4 ~~~Pl~~---L~~~~~k~V~V~lk~----g~~~~G~L~~~D~~mNl~L~~ 46 (74)
T d1mgqa_ 4 VQRPLDA---LGNSLNSPVIIKLKG----DREFRGVLKSFDLHMNLVLND 46 (74)
T ss_dssp TTCTTHH---HHHTTTSEEEEEETT----TEEEEEEEEEECTTCCEEEEE
T ss_pred CCCCHHH---HHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf 2075899---998589869999879----999999999997999859934
No 6
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=77.02 E-value=1 Score=22.10 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 774457899998710568898722668807899998512697-599996
Q gi|254780789|r 100 DRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 100 dRpL~~~~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
++||.. .+.++|+.|.|++++ | +.+.|+|.++|.. .+.|..
T Consensus 1 ~~Pl~~---L~~~~~~~V~V~lk~---g-~~~~G~L~~~D~~mNlvL~~ 42 (71)
T d1h641_ 1 ERPLDV---IHRSLDKDVLVILKK---G-FEFRGRLIGYDIHLNVVLAD 42 (71)
T ss_dssp CCHHHH---HHTTTTSEEEEEETT---S-EEEEEEEEEECTTCCEEEEE
T ss_pred CCCHHH---HHHHCCCEEEEEECC---C-CEEEEEEEEECCCCCEEEEE
T ss_conf 986689---998689979999969---9-99999999998999949925
No 7
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=73.86 E-value=2.2 Score=20.06 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=37.0
Q ss_pred HCCEEEEEEECCCCCEEEEEEEEEECCCC--EEEEEECCCCCCCCCCCEEEEEHHHHHHC
Q ss_conf 10568898722668807899998512697--59999635545677772699768876517
Q gi|254780789|r 113 NGHVVACEIVLSSGDKQKLIGKIMGTSET--GFFLEKEKRGEKDMNELQIAISFDSLLSA 170 (192)
Q Consensus 113 ~G~~VkV~l~~~~~g~k~~~G~L~~v~~~--~i~l~~~~~~~k~~~~~~v~ip~~~I~kA 170 (192)
.|..|+| +..|..| |.|++.+++.+ .+.+.++--++ ...+++++++|.||
T Consensus 7 ~Gd~V~I-~~GpF~g---~~g~V~~i~~~k~rv~V~v~ifGr----~t~vel~~~~ieKa 58 (58)
T d1nz9a_ 7 EGDQVRV-VSGPFAD---FTGTVTEINPERGKVKVMVTIFGR----ETPVELDFSQVVKA 58 (58)
T ss_dssp TTCEEEE-CSGGGTT---CEEEEEEEETTTTEEEEEEESSSS----EEEEEECGGGEEEC
T ss_pred CCCEEEE-ECCCCCC---CEEEEEEECCCCCEEEEEEEECCC----CCEEEECHHHEECC
T ss_conf 9999999-0058999---889999992889999999995399----84585699998709
No 8
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=73.78 E-value=1.7 Score=20.73 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=28.3
Q ss_pred HHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEEC
Q ss_conf 9998710568898722668807899998512697-5999963
Q gi|254780789|r 108 DFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKE 148 (192)
Q Consensus 108 ~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~ 148 (192)
-.+.++|+.|.|+++ +|.+.+.|+|.++|+. .++|...
T Consensus 9 ~L~~~~~~~V~V~lk---~~~~~~~G~L~~~D~~mNlvL~~~ 47 (75)
T d1ljoa_ 9 MVKSMVGKIIRVEMK---GEENQLVGKLEGVDDYMNLYLTNA 47 (75)
T ss_dssp HHHHTTTSEEEEEET---TCSSEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHCCCEEEEEEE---CCCEEEEEEEEEECCCCCEEEEEE
T ss_conf 999866989999997---899999999999869884799679
No 9
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=72.84 E-value=2 Score=20.27 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.3
Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 99998710568898722668807899998512697-599996
Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
.-.+.++|+.|.|++++ | +.+.|+|.++|.. .+.|..
T Consensus 6 ~~L~~~~~~~V~V~lk~---g-~~~~G~L~~~D~~mNlvL~~ 43 (72)
T d1i4k1_ 6 DVLNRSLKSPVIVRLKG---G-REFRGTLDGYDIHMNLVLLD 43 (72)
T ss_dssp HHHHTTTTSEEEEEEGG---G-CEEEEEEEEECTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECC---C-CEEEEEEEEECCCCCEEEEE
T ss_conf 99998689879999889---9-99999999995999859934
No 10
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=71.08 E-value=2.3 Score=19.94 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEEC
Q ss_conf 99998710568898722668807899998512697-5999963
Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKE 148 (192)
Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~ 148 (192)
.-.+.++|+.|.|+|++ .+.+.|+|.++|+. .+.|...
T Consensus 5 ~~L~~~~~k~V~V~Lk~----g~~~~G~L~~~D~~mNivL~~~ 43 (71)
T d1i8fa_ 5 ATLQDSIGKQVLVKLRD----SHEIRGILRSFDQHVNLLLEDA 43 (71)
T ss_dssp HHHHTTTTSEEEEEEGG----GEEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEECCE
T ss_conf 87887579879999979----9999999999978700499109
No 11
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=70.60 E-value=3.2 Score=19.05 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCC
Q ss_conf 7105688987226688078999985126975999963554
Q gi|254780789|r 112 WNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRG 151 (192)
Q Consensus 112 ~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~~i~l~~~~~~ 151 (192)
|+|+.|+|.. +.+.+.|+-.++++++-.+-....+
T Consensus 1 f~gk~V~v~~-----g~~~i~G~a~gId~~G~Lll~t~~g 35 (47)
T d1biaa2 1 FINRPVKLII-----GDKEIFGISRGIDKQGALLLEQDGI 35 (47)
T ss_dssp TTTSEEEEEE-----TTEEEEEEEEEECTTSCEEEEETTE
T ss_pred CCCCEEEEEE-----CCEEEEEEEEEECCCCCEEEEECCC
T ss_conf 9898999997-----9969999995399997499997998
No 12
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.15 E-value=2.6 Score=19.60 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 998710568898722668807899998512697-599996
Q gi|254780789|r 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
..+|+|+.|.|++. +.+.|.|+|.++|.. .+.|..
T Consensus 3 L~~~l~~rv~V~l~----dgR~~~G~L~~~D~~~NlvL~~ 38 (81)
T d1d3bb_ 3 MLQHIDYRMRCILQ----DGRIFIGTFKAFDKHMNLILCD 38 (81)
T ss_dssp CGGGTTSEEEEEET----TCCEEEEEEEECCTTCCEEEEE
T ss_pred HHHHCCCEEEEEEC----CCCEEEEEEEEECCCCCEEECC
T ss_conf 49878997999984----9989999999987866889858
No 13
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.25 E-value=2.7 Score=19.42 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=26.9
Q ss_pred HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 998710568898722668807899998512697-599996
Q gi|254780789|r 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
.+.++|+.|.|+|++ | ..+.|+|.++|+. .+.|..
T Consensus 7 L~~~~g~~V~VeLkn---g-~~~~G~L~~~D~~mNi~L~~ 42 (72)
T d1d3ba_ 7 LHEAEGHIVTCETNT---G-EVYRGKLIEAEDNMNCQMSN 42 (72)
T ss_dssp HHHTTTSEEEEEETT---S-CEEEEEEEEECTTCCEEEEE
T ss_pred HHHCCCCEEEEEECC---C-EEEEEEEEEECCCEEEEEEE
T ss_conf 986089999999899---8-39999899994872589979
No 14
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=63.93 E-value=3.5 Score=18.76 Aligned_cols=61 Identities=8% Similarity=0.118 Sum_probs=37.3
Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEECCCCCCCCCCCEEEEEHHHHHHCCE
Q ss_conf 99998710568898722668807899998512697-5999963554567777269976887651725
Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEKEKRGEKDMNELQIAISFDSLLSARL 172 (192)
Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkL 172 (192)
..+..++|+.|.|+|++ | +.+.|+|.++|+. .++|......... .-..+-|-=+.|..-.+
T Consensus 3 ~~L~~~~gk~V~VeLkn---g-~~~~G~L~~~D~~mNivL~da~~~~~~-k~~~v~IRG~~I~~I~~ 64 (127)
T d1m5q1_ 3 AELNNLLGREVQVVLSN---G-EVYKGVLHAVDNQLNIVLANASNKAGE-KFNRVFIMYRYIVHIDS 64 (127)
T ss_dssp HHHHTTTTSEEEEEETT---S-CEEEEEEEEECTTCCEEEEEEEETTCC-EEEEEEECGGGEEEEEE
T ss_pred HHHHHHCCCEEEEEECC---C-CEEEEEEEEECCCCEEEEEEEEECCCC-CCCEEEEECCEEEEEEC
T ss_conf 68887379889999899---9-899999999878855899587987888-06679994885999982
No 15
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=61.45 E-value=4.7 Score=17.94 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 99998710568898722668807899998512697-599996
Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
+-...++|+.|.|++++ .+.+.|+|.++|.. .+.|..
T Consensus 10 ~~L~~~~~~~V~V~lk~----g~~~~G~L~~~D~~mNlvL~~ 47 (76)
T d1th7a1 10 KVLAESLNNLVLVKLKG----NKEVRGMLRSYDQHMNLVLSD 47 (76)
T ss_dssp HHHHHHTTSEEEEEETT----TEEEEEEEEEECTTCCEEEEE
T ss_pred HHHHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEEE
T ss_conf 99998679879999889----999999999997999879857
No 16
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.10 E-value=4.6 Score=18.02 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=27.3
Q ss_pred HHHHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEEE
Q ss_conf 99998710568898722668807899998512697-599996
Q gi|254780789|r 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLEK 147 (192)
Q Consensus 107 ~~f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~~ 147 (192)
+=.+...|+.|.|+|+. | ..++|+|.++|+. .+.|..
T Consensus 4 ~fL~~~~g~~V~VeLkn---g-~~~~G~L~~~D~~MNl~L~~ 41 (80)
T d1b34a_ 4 RFLMKLSHETVTIELKN---G-TQVHGTITGVDVSMNTHLKA 41 (80)
T ss_dssp HHHHTCTTCEEEEEETT---C-CEEEEEEEEECTTCCEEEEE
T ss_pred HHHHHCCCCEEEEEECC---C-CEEEEEEEEECCCCEEEEEE
T ss_conf 98887499889999989---9-89999999983895899979
No 17
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=54.18 E-value=3.5 Score=18.77 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHCCEEEEEEECCCCCEEEEEEEEEECCCC-EEEEE
Q ss_conf 998710568898722668807899998512697-59999
Q gi|254780789|r 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET-GFFLE 146 (192)
Q Consensus 109 f~r~~G~~VkV~l~~~~~g~k~~~G~L~~v~~~-~i~l~ 146 (192)
.++++|+.|.|.++. .+.|.|+|.++|.. .+.|.
T Consensus 10 L~~~l~k~V~V~l~~----gr~~~G~L~~~D~~~NlvL~ 44 (92)
T d2fwka1 10 IDKCIGNRIYVVMKG----DKEFSGVLRGFDEYVNMVLD 44 (92)
T ss_dssp HHHTBTSBCEEEETT----TEEECCEEEEECTTCCEEEE
T ss_pred HHHHCCCEEEEEECC----CCEEEEEEEEECCCCCEEEE
T ss_conf 998769879999869----99999999999589997981
No 18
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=39.57 E-value=11 Score=15.76 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=34.6
Q ss_pred HCCEEEEEEECCCCCEEEEEEEEEECCC--CEEEEEECCCCCCCCCCCEEEEEHHHHHH
Q ss_conf 1056889872266880789999851269--75999963554567777269976887651
Q gi|254780789|r 113 NGHVVACEIVLSSGDKQKLIGKIMGTSE--TGFFLEKEKRGEKDMNELQIAISFDSLLS 169 (192)
Q Consensus 113 ~G~~VkV~l~~~~~g~k~~~G~L~~v~~--~~i~l~~~~~~~k~~~~~~v~ip~~~I~k 169 (192)
.|..|+| +..|..| |.|++..++. ..+.+.++--++ ...+++++++|.|
T Consensus 7 ~Gd~V~I-~~GpF~g---~~g~V~~i~~~~~rv~V~v~~fGr----~t~vel~~~~vek 57 (58)
T d1nppa2 7 KGDQVRV-IEGPFMN---FTGTVEEVHPEKRKLTVMISIFGR----MTPVELDFDQVEK 57 (58)
T ss_dssp TTCEEEE-CSSTTTT---CEEEEEEEEGGGTEEEEEEEETTE----EEEEEEEGGGEEE
T ss_pred CCCEEEE-CCCCCCC---CEEEEEEECCCCCEEEEEEEECCC----CCEEEECHHHEEE
T ss_conf 9999999-1268999---899999982889999999960099----8358668899894
No 19
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=34.05 E-value=13 Score=15.21 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHCCEEEEEEECCCCCEEEEEEEEEE----CCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCEE
Q ss_conf 71056889872266880789999851----269759999635545677772699768876517250
Q gi|254780789|r 112 WNGHVVACEIVLSSGDKQKLIGKIMG----TSETGFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173 (192)
Q Consensus 112 ~~G~~VkV~l~~~~~g~k~~~G~L~~----v~~~~i~l~~~~~~~k~~~~~~v~ip~~~I~kAkLv 173 (192)
..|..|+|..... .+...|.|+|.- .+++.++|.++.. =.+.++.+.|.+..+.
T Consensus 12 ~~GD~Vri~~~~~-~~~~~~eGilmP~~e~s~~~~ivlKL~nG-------YNiGi~~~~i~~ievl 69 (74)
T d1zq1a1 12 NVGDFVRITKEED-GEEVTYEGYIMPPYELSAGDTLVLKLENG-------YNIGIALEKIRRIEVL 69 (74)
T ss_dssp CTTCEEEEEEESS-SSEEECCEEECCCCTTCCCSEEEEEETTS-------CEEEEEGGGEEEEEEE
T ss_pred CCCCEEEEEEECC-CCCEEEEEEECCCCCCCCCCEEEEEECCC-------EEECCCHHHEEEEEEE
T ss_conf 9999899999148-88558999984885458998799994486-------2241336670489997
No 20
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.96 E-value=18 Score=14.35 Aligned_cols=102 Identities=11% Similarity=0.180 Sum_probs=67.0
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHH-----HHHHHHHH
Q ss_conf 0113337610014127999999999999747977999999549986899999658778789999999-----99987520
Q gi|254780789|r 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEEL-----SQAISPIL 80 (192)
Q Consensus 6 ~~~~~~~~r~~~~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~v-----Sr~i~~~L 80 (192)
.++++|-...+.. .+.+++.+++..+++..|+++..+++.. + -+-+++.-+- .+++.+++.. ||.|-..+
T Consensus 17 V~~~KyR~~vl~~-~i~~~l~~~i~~~~~~~~~~i~~~~~~~--D-HVHllv~~~p-~~sis~~v~~lKg~SSr~i~~~f 91 (130)
T d2f5ga1 17 VWIPKHRRNTLVN-EIAEYTKEVLKSIAEELGCEIIALEVMP--D-HIHLFVNCPP-RYAPSYLANYFKGKSARLILKKF 91 (130)
T ss_dssp EECBSSCTTCSCH-HHHHHHHHHHHHHHHHHTCEEEEEEEET--T-EEEEEEECCT-TSCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHCCH-HHHHHHHHHHHHHHHHCCCCCCEECCCC--C-CCEEEEECCC-CCCHHHHHHHHCCHHHHHHHHHC
T ss_conf 9764552032377-7999999999999985487631104478--8-6204674487-54789984353031279999878
Q ss_pred C-CCC--CCCCCCEEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf 2-113--5676507999727887744578999987105
Q gi|254780789|r 81 D-VEN--IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGH 115 (192)
Q Consensus 81 D-~~d--~i~~~Y~LEVSSPGidRpL~~~~~f~r~~G~ 115 (192)
- ... .-...| =++|-| ...+-..++|..+.++
T Consensus 92 ~~l~~~~~W~~gY--~~~tvg-~~~~~~i~~YI~~Q~~ 126 (130)
T d2f5ga1 92 PQLNKGKLWTRSY--FVATAG-NVSSEVIKKYIEEQWR 126 (130)
T ss_dssp GGGCSSCSBCSCE--EEEEEB-CCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCE--EEEECC-CCCHHHHHHHHHHHCC
T ss_conf 6545788325886--899158-9999999999997371
No 21
>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}
Probab=24.39 E-value=19 Score=14.17 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=28.9
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 68999996587787899999999998752021135676507999727887
Q gi|254780789|r 51 LLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGID 100 (192)
Q Consensus 51 ~~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGid 100 (192)
.+|+.|+.+.. .-+.....++.+.+...| ++.|.|||--..-.
T Consensus 2 y~L~LyVaG~t-p~S~~ai~nl~~i~e~~l------~~~y~LeVIDv~~q 44 (90)
T d1r5pa_ 2 YVLKLYVAGNT-PNSVRALKTLKNILEQEF------QGIYALKVIDVLKN 44 (90)
T ss_dssp EEEEEEESSCC-HHHHHHHHHHHHHHHHHH------TTSEEEEEEETTTS
T ss_pred EEEEEEECCCC-HHHHHHHHHHHHHHHHHC------CCCEEEEEEECCCC
T ss_conf 49999982898-448999999999999866------99679999872249
No 22
>d2bu1a1 d.85.1.1 (A:1-129) MS2 virus coat protein {Bacteriophage MS2 [TaxId: 12022]}
Probab=23.66 E-value=13 Score=15.21 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 78999999999987520211356765
Q gi|254780789|r 64 MTLRDCEELSQAISPILDVENIIEGH 89 (192)
Q Consensus 64 i~iddC~~vSr~i~~~LD~~d~i~~~ 89 (192)
-+-|||+-+++++...|..-+||+++
T Consensus 96 at~dd~~li~kal~glfk~gnpia~a 121 (129)
T d2bu1a1 96 ATNSDCELIVKAMQGLLKDGNPIPSA 121 (129)
T ss_dssp CCHHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 61886312799856675059863787
No 23
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=22.95 E-value=20 Score=13.99 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=29.6
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89999965877878999999999987520211356
Q gi|254780789|r 52 LLQIFVERDDGNMTLRDCEELSQAISPILDVENII 86 (192)
Q Consensus 52 ~LrI~ID~~dg~i~iddC~~vSr~i~~~LD~~d~i 86 (192)
.-||.+++|=| -+++-+..++..|...++++.++
T Consensus 141 ~~RvVvEKPfG-~Dl~SA~~Ln~~l~~~f~E~qiy 174 (195)
T d1h9aa1 141 YNRLMIEKPFG-TSYDTAAELQNDLENAFDDNQLF 174 (195)
T ss_dssp CEEEEECSCSC-SSHHHHHHHHHHHTTTCCGGGEE
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHHHCCHHHEE
T ss_conf 64799857865-77788999999998328997850
No 24
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=22.92 E-value=11 Score=15.55 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHC-----CCCCCCCCCEEEEEECCC
Q ss_conf 89999999999875202-----113567650799972788
Q gi|254780789|r 65 TLRDCEELSQAISPILD-----VENIIEGHYRLEVSSPGI 99 (192)
Q Consensus 65 ~iddC~~vSr~i~~~LD-----~~d~i~~~Y~LEVSSPGi 99 (192)
+.--.+-|++.+++.=- .+|--.+-|.|||+||--
T Consensus 32 N~rLLelV~~WL~e~GiestihLDDkRHGVYVLevp~~~R 71 (80)
T d1b24a2 32 NKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDR 71 (80)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGGH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCHHH
T ss_conf 3689999999999708601487426645279994586536
No 25
>d1utya_ b.147.1.1 (A:) Nonstructural protein NS2 {Bluetongue virus [TaxId: 40051]}
Probab=22.26 E-value=8.4 Score=16.39 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH-----------HC-CCCCCCCCCEEEEEECCCCCCC
Q ss_conf 999999998752-----------02-1135676507999727887744
Q gi|254780789|r 68 DCEELSQAISPI-----------LD-VENIIEGHYRLEVSSPGIDRPM 103 (192)
Q Consensus 68 dC~~vSr~i~~~-----------LD-~~d~i~~~Y~LEVSSPGidRpL 103 (192)
-|.+++++.+.. +. +..|.+..|.|||+-||.-|-+
T Consensus 15 ~~gkia~~~~~~Y~~vKiGr~~~~~~v~~P~Pk~yVleI~~~gA~riq 62 (153)
T d1utya_ 15 LCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQ 62 (153)
T ss_dssp HHHHHHHHTTCSEEEEEESSSCEEEEESSCCTTCEEEECSSSEEEEEE
T ss_pred HHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCEEEEE
T ss_conf 689999860896399996458986361899998599993688569987
No 26
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=21.60 E-value=17 Score=14.47 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=15.4
Q ss_pred HCCCCCCCCCCEEEEEECCCC
Q ss_conf 021135676507999727887
Q gi|254780789|r 80 LDVENIIEGHYRLEVSSPGID 100 (192)
Q Consensus 80 LD~~d~i~~~Y~LEVSSPGid 100 (192)
+-..++-++.|.|+||.+|-.
T Consensus 40 F~f~~l~~G~Y~l~is~~Gy~ 60 (79)
T d1vlfn1 40 FKFDALDNGEYTVEIDADGKS 60 (79)
T ss_dssp EEEEEECSEEEEEEEEETTEE
T ss_pred EEEEECCCCCEEEEEEEECCC
T ss_conf 999726997789999985043
No 27
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.01 E-value=22 Score=13.75 Aligned_cols=17 Identities=0% Similarity=0.274 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 78999999999987520
Q gi|254780789|r 64 MTLRDCEELSQAISPIL 80 (192)
Q Consensus 64 i~iddC~~vSr~i~~~L 80 (192)
|.-+.+.++=..+...+
T Consensus 12 v~s~~A~~~m~~L~~~~ 28 (141)
T d3pmga4 12 VEAEGATKMMKDLEALM 28 (141)
T ss_dssp ECHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 88799999999999872
No 28
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase {Escherichia coli [TaxId: 562]}
Probab=20.85 E-value=14 Score=14.96 Aligned_cols=14 Identities=50% Similarity=0.513 Sum_probs=12.2
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99999607964689
Q gi|254780789|r 179 LRASLNNYGSYAGL 192 (192)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (192)
+|+||+|+|++|-|
T Consensus 351 lrQSM~NGGGPACL 364 (439)
T d1ynha1 351 LRESMANGGGPACL 364 (439)
T ss_dssp CHHHHTTTCCTTTT
T ss_pred HHHHHHCCCCCHHH
T ss_conf 78885558976222
No 29
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=20.53 E-value=23 Score=13.69 Aligned_cols=98 Identities=12% Similarity=0.237 Sum_probs=59.6
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHH-----HHHHHHHH
Q ss_conf 0113337610014127999999999999747977999999549986899999658778789999999-----99987520
Q gi|254780789|r 6 FLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEEL-----SQAISPIL 80 (192)
Q Consensus 6 ~~~~~~~~r~~~~~~i~~~i~~li~p~v~~lG~eLv~v~~~~~~~~~LrI~ID~~dg~i~iddC~~v-----Sr~i~~~L 80 (192)
.++++|-...+. ..+.+++.+++..+++..|+++..++..+. -+-++++-+- .+++-+.... ||.+-..+
T Consensus 17 V~~~KyR~~vl~-~~v~~~l~~~i~~~~~~~~~~i~~~~~~~D---HVHllv~~~p-~~sis~~v~~lKg~Ssr~i~~~f 91 (125)
T d2vjva1 17 VWCPKYRRKVLV-GAVEMRLKEIIQEVAKELRVEIIEMQTDKD---HIHILADIDP-SFGVMKFIKTAKGRSSRILRQEF 91 (125)
T ss_dssp EECBGGGCCCCS-HHHHHHHHHHHHHHHHHTTCEEEEEEEETT---EEEEEEECCT-TTCHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCHHHCC-HHHHHHHHHHHHHHHHHCCCEEEECCCCCC---CCEEEEEECC-CCCHHHHHCHHCCCCHHHHHHHH
T ss_conf 986355334447-799999999999987653866644144677---6258998354-36766763410362168899888
Q ss_pred CC-----CCCCCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 21-----13567650799972788774457899998
Q gi|254780789|r 81 DV-----ENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111 (192)
Q Consensus 81 D~-----~d~i~~~Y~LEVSSPGidRpL~~~~~f~r 111 (192)
.. ..+-...|. ++|-|- -++-..++|-+
T Consensus 92 ~~lk~~~~~fWs~gYf--~~TvG~-~~~~~i~~YIe 124 (125)
T d2vjva1 92 NHLKTKLPTLWTNSCF--ISTVGG-APLNVVKQYIE 124 (125)
T ss_dssp HHHHHSCSCSBCSCEE--EEEECS-SCHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCEE--EEECCC-CCHHHHHHHHC
T ss_conf 7888751475899788--882799-88999999843
Done!