RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780789|ref|YP_003065202.1| hypothetical protein
CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>gnl|CDD|178857 PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.
          Length = 154

 Score =  128 bits (325), Expect = 7e-31
 Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 8/156 (5%)

Query: 20  GLAGDISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVERDDGNMTLRDCEELSQAISP 78
            L   ++ +I+PV+E + +  V +  + E ++  L+I+++++ G   L DCEE+S+ IS 
Sbjct: 4   PLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGI-DLDDCEEVSRQISA 62

Query: 79  ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138
           +LDVE+ I G Y LEVSSPG+DRP+ +  DF R+ G  V  ++      ++K  G ++  
Sbjct: 63  VLDVEDPIPGAYTLEVSSPGLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAV 122

Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174
                 LE E +      E ++ I  D++  ARL+V
Sbjct: 123 DGETVTLEVEGK------EKEVEIPLDNIAKARLVV 152


>gnl|CDD|184775 PRK14636, PRK14636, hypothetical protein; Provisional.
          Length = 176

 Score =  101 bits (252), Expect = 2e-22
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 25  ISSVIQPVIEEMSFRSVQISLLE-EKNLLLQIFVER-DDGNMTLRDCEELSQAISPILDV 82
           ++++I+P  + +    V++++   + +  LQI  ER D   + + DC  LS+ +S + D 
Sbjct: 7   LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDE 66

Query: 83  ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142
            + IE  YRLEVSSPGIDRP+ R  DF  W GH     +      +++  G++ G     
Sbjct: 67  LDPIEDAYRLEVSSPGIDRPLTRPKDFADWAGHEARIALSEPLDGRKQFRGELKGIDGDT 126

Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARLIVTDELLRAS 182
             +   K GE         + F ++ SA+LI+TD L+ A+
Sbjct: 127 VTIADNKAGEV-------ILPFAAIESAKLILTDALIAAT 159


>gnl|CDD|173110 PRK14647, PRK14647, hypothetical protein; Provisional.
          Length = 159

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 33/94 (35%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 25  ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDVE 83
           ++ + + V+  +    V++    E + ++L++F++++ G + L DC E+S+ +S ILDVE
Sbjct: 10  VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGG-VNLDDCAEVSRELSEILDVE 68

Query: 84  NIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117
           + I   Y LEVSSPG+DRP+ +++D+ R+ G +V
Sbjct: 69  DFIPERYTLEVSSPGLDRPLKKEADYERYAGRLV 102


>gnl|CDD|173103 PRK14640, PRK14640, hypothetical protein; Provisional.
          Length = 152

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 1/83 (1%)

Query: 53  LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRW 112
           L+++++ ++G +++ +C E+S  +  I+DVE+ I   Y LEVSSPG+DRP+ + + F ++
Sbjct: 37  LRVYIDGENG-VSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKY 95

Query: 113 NGHVVACEIVLSSGDKQKLIGKI 135
            G   A  + +++ +++K  G I
Sbjct: 96  VGQEAAVTLRMATNNRRKFKGVI 118


>gnl|CDD|184777 PRK14638, PRK14638, hypothetical protein; Provisional.
          Length = 150

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 12/126 (9%)

Query: 47  EEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRK 106
           E +  +L+I ++   G +++RDCE  S+ I   LD E++IE  Y LEVSSPG+DRP+   
Sbjct: 33  ESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGP 92

Query: 107 SDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDS 166
            D++R+ G +   +IV   G  +  IG+I    +    +  EK         +  I+ D 
Sbjct: 93  KDYVRFTGKLA--KIVTKDG--KTFIGRIESFVDGTITISDEKE--------KYEINIDD 140

Query: 167 LLSARL 172
           +  A L
Sbjct: 141 VKRANL 146


>gnl|CDD|173102 PRK14639, PRK14639, hypothetical protein; Provisional.
          Length = 140

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 10/111 (9%)

Query: 61  DGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACE 120
           +G + L DCE LS+ +SPI DVE  + G Y LEVSSPG++R + +   F +  G +V   
Sbjct: 35  EGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHFAKSIGELVK-- 92

Query: 121 IVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKDMNELQIAISFDSLLSAR 171
             +++ +K+K  GKI+   +    LE  +  EK        I+F+ +  A+
Sbjct: 93  --ITTNEKEKFEGKIVSVDDENITLENLENKEK------TTINFNDIKKAK 135


>gnl|CDD|184780 PRK14645, PRK14645, hypothetical protein; Provisional.
          Length = 154

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 24  DISSVIQPVIEEMSFRSVQISLL-EEKNLLLQIFVER-DDGNMTLRDCEELSQAISPILD 81
           D+  + +  +E + +  +++ +       ++ + ++R D+  +T+ D E  S+A+   LD
Sbjct: 10  DLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELD 69

Query: 82  VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNG 114
             + IEG YRLEV SPG  RP+     F R+ G
Sbjct: 70  RLDPIEGEYRLEVESPGPKRPLFTARHFERFAG 102


>gnl|CDD|184773 PRK14631, PRK14631, hypothetical protein; Provisional.
          Length = 174

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)

Query: 52  LLQIFVER-----------DDGN------MTLRDCEELSQAISPILDVENIIEGHYRLEV 94
           LL+I+++R           +DG       + + DC  ++Q +  +LDV + I G Y LEV
Sbjct: 38  LLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDPISGEYALEV 97

Query: 95  SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKRGEKD 154
           SSPG DRP  +      + G  VA  ++ +  +++K   K++        LE E+   + 
Sbjct: 98  SSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLLAVD-----LENEEIQVEV 152

Query: 155 MNELQIAISFDSLLSARLIVTD 176
             +  + I  +++  A LI  D
Sbjct: 153 EGKHVLDIDSNNIDKANLIYQD 174


>gnl|CDD|173096 PRK14633, PRK14633, hypothetical protein; Provisional.
          Length = 150

 Score = 55.4 bits (133), Expect = 8e-09
 Identities = 26/81 (32%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 21  LAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPIL 80
           L  D+  +++P+  ++ +    I ++    L ++IF++ ++G +++ DC+ +S+ IS + 
Sbjct: 2   LLDDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDHENG-VSVDDCQIVSKEISAVF 60

Query: 81  DVENIIEGHYRLEVSSPGIDR 101
           DVE+ + G Y LEVSSPG++R
Sbjct: 61  DVEDPVSGKYILEVSSPGMNR 81


>gnl|CDD|173095 PRK14632, PRK14632, hypothetical protein; Provisional.
          Length = 172

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 25  ISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVEN 84
           I+ +  P +  +      I L      ++++FV+  +G +T+  C E+S+ +   L+VE+
Sbjct: 10  IADMAGPFLASLGLELWGIELSYGGRTVVRLFVDGPEG-VTIDQCAEVSRHVGLALEVED 68

Query: 85  IIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGD---KQKLIGKIMGTSET 141
           +I   Y LEVSSPG++RP  R      + G  +   ++  + +   ++K  G+++     
Sbjct: 69  VISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLIDPTPEWPGRRKFRGELLAVEGD 128

Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLI 173
              L  E     +  E  +  S+  +  A LI
Sbjct: 129 TVVLRPEGAPAPEAEEAVLRTSWQGVRKANLI 160


>gnl|CDD|184778 PRK14642, PRK14642, hypothetical protein; Provisional.
          Length = 197

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 2/54 (3%)

Query: 64  MTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVV 117
           +T+ DCE++++ +   L+V+ +   + RLEVSSPGIDRP+  + DF R+ G V+
Sbjct: 52  VTVEDCEKVTRQLQFALEVDGV--DYKRLEVSSPGIDRPLRHEQDFERFAGEVI 103


>gnl|CDD|184776 PRK14637, PRK14637, hypothetical protein; Provisional.
          Length = 151

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 20/150 (13%)

Query: 27  SVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISP----ILDV 82
           S  +PV+E +  + V +S   ++       V    G + L DC  + + + P    +  V
Sbjct: 12  SECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGV 71

Query: 83  ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETG 142
            ++      LEVSSPGI+R +   ++F  + G  V    V      Q  +G I    ET 
Sbjct: 72  RDVF-----LEVSSPGIERVIKNAAEFSIFVGETVK---VWFECTGQWQVGTIAEADETC 123

Query: 143 FFLEKEKRGEKDMNELQIAISFDSLLSARL 172
             L  +           + I +  +  A+L
Sbjct: 124 LVLTSDGV--------PVTIPYVQITKAQL 145


>gnl|CDD|173097 PRK14634, PRK14634, hypothetical protein; Provisional.
          Length = 155

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 24/159 (15%)

Query: 24  DISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDG-NMTLRDCEELSQAISPILD 81
           D+ ++      +  F    I +L     + LQ+ + R  G +++L DC   S  +   L+
Sbjct: 8   DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALE 67

Query: 82  VENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141
              ++   Y LE+SSPGI   +    DF  + G  V        G +Q+L G ++     
Sbjct: 68  ASQLLTEAYVLEISSPGIGDQLSSDRDFQTFRGFPVEVSHRDDDGSEQRLEGLLL----- 122

Query: 142 GFFLEKEKRGEKDMNELQI-------AISFDSLLSARLI 173
                     E++ + LQI        I  DS++S RL 
Sbjct: 123 ----------ERNEDHLQINIRGRIKRIPRDSVISVRLT 151


>gnl|CDD|173109 PRK14646, PRK14646, hypothetical protein; Provisional.
          Length = 155

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 21/99 (21%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 25  ISSVIQPVIEEMSFRSVQISLLEEKN-LLLQIFVERDDGN-MTLRDCEELSQAISPILDV 82
           +  +++ V  E   +   +++   +N ++++I +++ +G+ ++L DC   +   S  ++ 
Sbjct: 9   LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68

Query: 83  ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEI 121
            N++   Y LE+SS G+   +  + DF  + G  V  E+
Sbjct: 69  SNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVEL 107


>gnl|CDD|179358 PRK02001, PRK02001, hypothetical protein; Validated.
          Length = 152

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 17/116 (14%)

Query: 45  LLEEKNLLL---------QIFVERD-DGNMTLRDCEELSQAISPILDVENIIEGHYRLEV 94
           LLE   L L         +I VE D D  + + DC ELS+AI   LD E   E  + LEV
Sbjct: 14  LLEGPELFLVDLTISPDNKIVVEIDGDEGVWIEDCVELSRAIEHNLDRE---EEDFELEV 70

Query: 95  SSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSETGFFLEKEKR 150
            S G+  P+     + +  G  +  E++  +G  +K+ G++    E    LE + R
Sbjct: 71  GSAGLTSPLKVPRQYKKNIGREL--EVLTKNG--KKIEGELKSADENDITLEVKAR 122


>gnl|CDD|184779 PRK14644, PRK14644, hypothetical protein; Provisional.
          Length = 136

 Score = 32.9 bits (75), Expect = 0.057
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 43  ISLLEEK--NLLLQIFVERDDGNMTLR---------DCEELSQAISPILDVENIIEGHYR 91
              L EK  N + +I + ++DG++ L          D EEL++ IS  +D  ++      
Sbjct: 4   KEKLLEKFGNKINEIKIVKEDGDLFLEVILNSRDLKDIEELTKEISDFIDNLSVEFDFDS 63

Query: 92  LEVSSPGID 100
           L++SSPG D
Sbjct: 64  LDISSPGFD 72


>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
          Length = 479

 Score = 30.8 bits (70), Expect = 0.25
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 11  YEPRIFGDMGLAGDISSVIQPVI 33
           Y P IF  +G + D  +++Q +I
Sbjct: 293 YAPEIFKTLGASTD-IALLQTII 314


>gnl|CDD|173106 PRK14643, PRK14643, hypothetical protein; Provisional.
          Length = 164

 Score = 30.2 bits (68), Expect = 0.33
 Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 24  DISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERD-------DGNMTLRDCEELSQA 75
            I+ ++   +E ++ +  +I+ L+E +N ++QI VE         D ++ ++  + +S  
Sbjct: 10  QINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNK 69

Query: 76  ISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLR 111
           I   +         Y LE+SS GI++ +  + + ++
Sbjct: 70  IDQFIKTSE----KYLLEISSSGIEKQIRSQEELVK 101


>gnl|CDD|184265 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
            Provisional.
          Length = 1747

 Score = 28.2 bits (63), Expect = 1.2
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 14/66 (21%)

Query: 57   VERDDGNMTLRDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN--- 113
            +++DDG +TLRD E  ++ ISP    E + EG   + + +P  D   V   D +R+    
Sbjct: 1296 IDKDDGLITLRDAEGNTRLISPR---EAVAEG---VTLYTP--DTIRVGTGDRMRFTKSD 1347

Query: 114  ---GHV 116
               G+V
Sbjct: 1348 RERGYV 1353


>gnl|CDD|173093 PRK14630, PRK14630, hypothetical protein; Provisional.
          Length = 143

 Score = 27.8 bits (62), Expect = 1.7
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 17/88 (19%)

Query: 79  ILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGT 138
           +L +E +++ ++ LE+S+PGI+R +  KSD           E  +  G K KL+  +   
Sbjct: 62  LLILEAVLKYNFSLEISTPGINRKI--KSDR----------EFKIFEGKKIKLM--LDND 107

Query: 139 SETGFFLEKEKRG---EKDMNELQIAIS 163
            E GF LE +      + D  E+ +  S
Sbjct: 108 FEEGFILEAKADSFIFKTDSKEVNVLYS 135


>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
          Length = 484

 Score = 27.8 bits (62), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 110 LRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141
           L+ NGH+V   IV++ G  Q LI + M +S+ 
Sbjct: 303 LKENGHMV---IVVAEGAGQDLIAESMESSDL 331


>gnl|CDD|173104 PRK14641, PRK14641, hypothetical protein; Provisional.
          Length = 173

 Score = 27.0 bits (60), Expect = 3.0
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 53  LQIFVERDDGNMTLRDCEELSQAISPILDVENIIEG----HYRLEVSSPGIDRPMVRKSD 108
           +++ ++ D G + +  C   S+ I   L+ +  + G     + L VSSPG+  P++    
Sbjct: 40  IEVLLDADTG-IRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIILPRQ 98

Query: 109 FLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141
           + R  G ++        G + ++ G +   S T
Sbjct: 99  YGRHVGRLLRVTYRDEEGSEHEVTGHLQEVSLT 131


>gnl|CDD|152641 pfam12206, DUF3599, Domain of unknown function (DUF3599).  This
           family of proteins is found in bacteria. Proteins in
           this family are approximately 120 amino acids in length.
           This domain is the phage-like element pbsx protein xkdh.
          Length = 116

 Score = 27.0 bits (60), Expect = 3.0
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 4/34 (11%)

Query: 83  ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116
              I   + +     G D   +R +D + W+G V
Sbjct: 64  NQSIYQSFLVHFP-LGTD---IRVNDKVIWDGVV 93


>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
            alpha; Validated.
          Length = 1740

 Score = 26.7 bits (58), Expect = 4.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 164  FDSLLSARLIVTDELLRASLNNYGSYAGL 192
            F++ L  R + ++ELL+   +NYGS  GL
Sbjct: 1509 FEAELKKRGLYSEELLKKISDNYGSVQGL 1537


>gnl|CDD|185451 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
          Length = 1388

 Score = 26.2 bits (58), Expect = 5.1
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 35/140 (25%)

Query: 63   NMTLRDCEELSQAISPILDVENIIEGHY--RLE---------VSSPGIDRPMVRKSDFLR 111
            NM L D     +  S   D  +I++  Y  RL+         +    ++R + R S+ +R
Sbjct: 962  NMVLFDENGKIKKYS---DALDILKEFYLVRLDLYKKRKEYLLGK--LERELARLSNKVR 1016

Query: 112  WNGHVVACEIVLSSGDKQKLI-------------------GKIMGTSETGFFLEKEKRGE 152
            +  HV+  E+V+++  K+ L+                    KI    E G   + E   E
Sbjct: 1017 FIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDE 1076

Query: 153  KDMNELQIAISFDSLLSARL 172
             D  EL  A+S+D LLS  +
Sbjct: 1077 DDEEELGAAVSYDYLLSMPI 1096


>gnl|CDD|183380 PRK11916, PRK11916, electron transfer flavoprotein subunit YdiR;
           Provisional.
          Length = 312

 Score = 26.0 bits (57), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 16  FGDMGLAGDISSVIQPVIEEMS 37
           + D GL GDI  V+  +I ++S
Sbjct: 290 YADYGLVGDIYKVVPALISQLS 311


>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
          Length = 451

 Score = 25.7 bits (57), Expect = 8.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)

Query: 26  SSVIQPVIEEMSF 38
           S++IQP+I+ MSF
Sbjct: 408 STLIQPLIQAMSF 420


>gnl|CDD|162319 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
          family.  This model represents a distinct clade of
          orotate phosphoribosyltransferases. Members include the
          experimentally determined example from Thermus
          aquaticus and additional examples from Caulobacter
          crescentus, Helicobacter pylori, Mesorhizobium loti,
          and related species.
          Length = 187

 Score = 25.5 bits (56), Expect = 10.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 55 IFVERDDGNMTLR 67
          IF ER+ G M LR
Sbjct: 85 IFAEREGGGMKLR 97


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,098,055
Number of extensions: 193145
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 33
Length of query: 192
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,092,969
Effective search space: 425668776
Effective search space used: 425668776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)