RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) >1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Length = 164 Score = 95.7 bits (238), Expect = 5e-21 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 25 ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82 + V++PVIE F V I + +++L IFV++ +G +TL D +L++ ISP+LD Sbjct: 14 VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 71 Query: 83 -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141 + Y LE++SPG++RP+ K G + + + ++ G ++ E Sbjct: 72 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174 +E + K + I + + ARL V Sbjct: 132 ELTMEYMDKTRKK----TVQIPYSLVSKARLAV 160 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.2 bits (91), Expect = 6e-04 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 36/187 (19%) Query: 31 PVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD-CEELSQAISPILDVENIIE-- 87 P+ +S S++ LL ++ N L + E + P E + + Sbjct: 8 PLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65 Query: 88 GH--YRLEVSSPGIDRPMVR------KSDFLRWNG-HVVACEIVLSSGDKQKLIGKIMGT 138 G+ +E S G ++ ++ +L N H +A +++ + +++ Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125 Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLS--ARLIVT-----------DELLRASLNN 185 + + + A+ F ++ A+L+ +EL L Sbjct: 126 ----YITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEEL--RDL-- 176 Query: 186 YGSYAGL 192 Y +Y L Sbjct: 177 YQTYHVL 183 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 33.1 bits (74), Expect = 0.044 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 24/54 (44%) Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87 E+ + + +Q S L+++ DD +P L ++ +E Sbjct: 18 EKQALKKLQAS--------LKLYA--DDS--------------APALAIKATME 47 >2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065 Score = 28.0 bits (61), Expect = 1.2 Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 6/113 (5%) Query: 4 THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN 63 +S +P GL G + I + Q + +E L +F E + Sbjct: 536 AKMYYSAVDPTKDIFTGLIGPM--KICK-KGSLHANGRQKDVDKEFYLFPTVFDENESLL 592 Query: 64 MTL---RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113 + Q D + + H + K D + W Sbjct: 593 LEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWY 645 >2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Score = 25.4 bits (55), Expect = 8.7 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Query: 87 EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119 E HYR E+ +P D SD +W+ +A Sbjct: 59 ESHYRPELPAPRTDW---SLSDVDQWDTAALAD 88 >3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis} Length = 126 Score = 25.3 bits (55), Expect = 9.1 Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%) Query: 83 ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116 + + + + D +R +D + W H Sbjct: 65 DQTVYHSFLVHFP-LSAD---IRVNDKIIWENHK 94 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.137 0.382 Gapped Lambda K H 0.267 0.0596 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,616,772 Number of extensions: 73807 Number of successful extensions: 151 Number of sequences better than 10.0: 1 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 9 Length of query: 192 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 105 Effective length of database: 3,584,002 Effective search space: 376320210 Effective search space used: 376320210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (24.9 bits)