RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780789|ref|YP_003065202.1| hypothetical protein
CLIBASIA_03400 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal
           protein, essential gene, structural genomics; NMR
           {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
          Length = 164

 Score = 95.7 bits (238), Expect = 5e-21
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 25  ISSVIQPVIEEMSFRSVQISLLEE-KNLLLQIFVERDDGNMTLRDCEELSQAISPILDV- 82
           +  V++PVIE   F  V I   +   +++L IFV++ +G +TL D  +L++ ISP+LD  
Sbjct: 14  VREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 71

Query: 83  -ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVACEIVLSSGDKQKLIGKIMGTSET 141
             +     Y LE++SPG++RP+  K       G  +   +  +   ++   G ++   E 
Sbjct: 72  KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131

Query: 142 GFFLEKEKRGEKDMNELQIAISFDSLLSARLIV 174
              +E   +  K      + I +  +  ARL V
Sbjct: 132 ELTMEYMDKTRKK----TVQIPYSLVSKARLAV 160


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 36/187 (19%)

Query: 31  PVIEEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRD-CEELSQAISPILDVENIIE-- 87
           P+   +S  S++  LL            ++  N  L +  E  +    P    E + +  
Sbjct: 8   PLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65

Query: 88  GH--YRLEVSSPGIDRPMVR------KSDFLRWNG-HVVACEIVLSSGDKQKLIGKIMGT 138
           G+    +E S  G    ++       ++ +L  N  H +A +++  +        +++  
Sbjct: 66  GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125

Query: 139 SETGFFLEKEKRGEKDMNELQIAISFDSLLS--ARLIVT-----------DELLRASLNN 185
               +   +         +   A+ F ++    A+L+             +EL    L  
Sbjct: 126 ----YITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEEL--RDL-- 176

Query: 186 YGSYAGL 192
           Y +Y  L
Sbjct: 177 YQTYHVL 183


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.1 bits (74), Expect = 0.044
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 24/54 (44%)

Query: 34 EEMSFRSVQISLLEEKNLLLQIFVERDDGNMTLRDCEELSQAISPILDVENIIE 87
          E+ + + +Q S        L+++   DD               +P L ++  +E
Sbjct: 18 EKQALKKLQAS--------LKLYA--DDS--------------APALAIKATME 47


>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
           transport, copper, transport, polymorphism,
           glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
           {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
           b.6.1.3 PDB: 1kcw_A*
          Length = 1065

 Score = 28.0 bits (61), Expect = 1.2
 Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 6/113 (5%)

Query: 4   THFLHSKYEPRIFGDMGLAGDISSVIQPVIEEMSFRSVQISLLEEKNLLLQIFVERDDGN 63
               +S  +P      GL G +   I      +     Q  + +E  L   +F E +   
Sbjct: 536 AKMYYSAVDPTKDIFTGLIGPM--KICK-KGSLHANGRQKDVDKEFYLFPTVFDENESLL 592

Query: 64  MTL---RDCEELSQAISPILDVENIIEGHYRLEVSSPGIDRPMVRKSDFLRWN 113
           +            Q      D +   + H              + K D + W 
Sbjct: 593 LEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWY 645


>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
           genomics consortium, SGC, transferase; 2.09A {Homo
           sapiens}
          Length = 214

 Score = 25.4 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 87  EGHYRLEVSSPGIDRPMVRKSDFLRWNGHVVAC 119
           E HYR E+ +P  D      SD  +W+   +A 
Sbjct: 59  ESHYRPELPAPRTDW---SLSDVDQWDTAALAD 88


>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328
           structure, structural genomics, PSI- 2, protein
           structure initiative; 2.50A {Bacillus subtilis}
          Length = 126

 Score = 25.3 bits (55), Expect = 9.1
 Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 83  ENIIEGHYRLEVSSPGIDRPMVRKSDFLRWNGHV 116
           +  +   + +       D   +R +D + W  H 
Sbjct: 65  DQTVYHSFLVHFP-LSAD---IRVNDKIIWENHK 94


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,616,772
Number of extensions: 73807
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 105
Effective length of database: 3,584,002
Effective search space: 376320210
Effective search space used: 376320210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)