Query gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 107 out of 1040 Neff 7.8 Searched_HMMs 39220 Date Sun May 29 19:58:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780790.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 pfam04138 GtrA GtrA-like prote 99.9 5E-25 1.3E-29 146.4 10.8 115 6-121 1-116 (116) 2 COG2246 Predicted membrane pro 99.9 9.9E-24 2.5E-28 139.7 13.0 123 2-125 11-138 (139) 3 pfam04138 GtrA GtrA-like prote 98.4 1.2E-06 3.1E-11 52.0 7.4 55 2-56 61-116 (116) 4 COG2246 Predicted membrane pro 98.3 1.8E-06 4.7E-11 51.1 5.8 63 61-124 7-69 (139) 5 pfam03818 MadM Malonate/sodium 65.2 6.2 0.00016 17.6 2.8 23 35-57 15-37 (60) 6 COG4818 Predicted membrane pro 37.7 25 0.00064 14.5 5.6 52 67-118 30-81 (105) 7 PRK10621 hypothetical protein; 37.5 25 0.00065 14.4 10.3 70 10-81 25-97 (269) 8 PRK09917 hypothetical protein; 32.3 31 0.0008 14.0 7.3 47 10-56 37-83 (157) 9 TIGR01116 ATPase-IIA1_Ca calci 29.4 35 0.0009 13.7 2.7 25 1-25 605-629 (800) 10 pfam06570 DUF1129 Protein of u 25.1 43 0.0011 13.3 13.1 85 34-119 113-201 (206) 11 pfam05957 DUF883 Bacterial pro 23.9 45 0.0011 13.2 2.7 29 90-118 66-94 (94) 12 pfam07301 DUF1453 Protein of u 21.8 50 0.0013 12.9 7.3 90 33-123 58-148 (149) 13 pfam08566 Pam17 Mitochondrial 21.0 52 0.0013 12.9 5.0 64 50-115 27-95 (174) No 1 >pfam04138 GtrA GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosyla Probab=99.92 E-value=5e-25 Score=146.35 Aligned_cols=115 Identities=23% Similarity=0.378 Sum_probs=106.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999-571138999999999999999998867205788067999999999999999999999 Q gi|254780790|r 6 IFIINIVVVFFIDVMGFFILMK-CGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSILNYAF 84 (129) Q Consensus 6 rF~ivG~~~~~vd~~i~~ll~~-~g~~~~~A~~ia~~~a~~~nf~lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (129) ||+++|++++++|+++++++.+ .+.++..|+.+|+.+|++.||.+||+|||++++++.++|..+|..+...+..++.++ T Consensus 1 rf~ivG~~~~~v~~~~~~~l~~~~~~~~~~A~~ia~~~~~~~~f~~n~~~tF~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 80 (116) T pfam04138 1 RFLLVGVLGTLVDLGVFLLLLNLLGLSYLLANAIAFLVAILFNYLLNRRWTFRSRGRGSLRQFLRFFLVSLLGLLLNLLL 80 (116) T ss_pred CEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 96876399999999999999999788899999999999999999977502657999634999999999999999999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999962123008999999999999999999767998 Q gi|254780790|r 85 YVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFMT 121 (129) Q Consensus 85 ~~~l~~~~~~~~~~~a~~i~~~~~~~~nf~~~k~~vF 121 (129) . ..+.+..+.++.+|+++++++.+++||.++|+||| T Consensus 81 ~-~~~~~~l~~~~~ia~ii~~~~~~~~ny~~~k~~vF 116 (116) T pfam04138 81 L-YLLVDLLGLDPLLAKLIGIAVVTVVNFLLSKFWVF 116 (116) T ss_pred H-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEC T ss_conf 9-99999828558999999999999999998840329 No 2 >COG2246 Predicted membrane protein [Function unknown] Probab=99.91 E-value=9.9e-24 Score=139.70 Aligned_cols=123 Identities=19% Similarity=0.256 Sum_probs=99.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHHHH Q ss_conf 789999999999999999999999995-711389999999999999999988672057880679999----999999999 Q gi|254780790|r 2 KQCIIFIINIVVVFFIDVMGFFILMKC-GADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLET----VRYGVMYFM 76 (129) Q Consensus 2 rql~rF~ivG~~~~~vd~~i~~ll~~~-g~~~~~A~~ia~~~a~~~nf~lnr~~tF~~~~~~~~~~~----~~~~~~~~~ 76 (129) +|+.||++||+.|+++|+++++++.+. +.+|.+|+++|+++|+++||++||+|||+++++++..+. ..+...+.+ T Consensus 11 ~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~~~~ii~sf~~N~~wTF~~~~~~~~~~~~~~~~~~~~~~~l 90 (139) T COG2246 11 SRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAYEAAIIFSFVLNRRWTFRDRSTSRLHEFLRRLVKFNVAVLL 90 (139) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999964342999999999999998145658899999999999999999741267527887699999999999999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999621230089999999999999999997679986767 Q gi|254780790|r 77 LSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFMTRRVY 125 (129) Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~a~~i~~~~~~~~nf~~~k~~vFrk~~ 125 (129) +..++.+....+.......+..+|+++++++++++||+.+|+ +|+|+. T Consensus 91 g~~~~~~~~~~l~~~~~~~~~~~a~~i~~~~~~i~nfi~s~~-v~~~~~ 138 (139) T COG2246 91 GLAVLLLVLYILTLGLLLVAYLIANLIGIVAAFIINFLLSKR-VFWRVR 138 (139) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEECC T ss_conf 999999999999875100899999999999999999998872-464167 No 3 >pfam04138 GtrA GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosyla Probab=98.41 E-value=1.2e-06 Score=52.02 Aligned_cols=55 Identities=22% Similarity=0.600 Sum_probs=51.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 7899999999999999999999999-957113899999999999999999886720 Q gi|254780790|r 2 KQCIIFIINIVVVFFIDVMGFFILM-KCGADPFYSRIFSIAVAFLVTWIPSRLFIF 56 (129) Q Consensus 2 rql~rF~ivG~~~~~vd~~i~~ll~-~~g~~~~~A~~ia~~~a~~~nf~lnr~~tF 56 (129) ||+.||.++...+.++|.++.+.+. .++.++.+|+.++-.++...||.+||+||| T Consensus 61 ~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~ii~~~~~~~~ny~~~k~~vF 116 (116) T pfam04138 61 RQFLRFFLVSLLGLLLNLLLLYLLVDLLGLDPLLAKLIGIAVVTVVNFLLSKFWVF 116 (116) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEC T ss_conf 99999999999999999999999999828558999999999999999998840329 No 4 >COG2246 Predicted membrane protein [Function unknown] Probab=98.28 E-value=1.8e-06 Score=51.10 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=54.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0679999999999999999999999999962123008999999999999999999767998676 Q gi|254780790|r 61 RKSFLETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFMTRRV 124 (129) Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~i~~~~~~~~nf~~~k~~vFrk~ 124 (129) .....|..||..+...+.+++.++.. ++.+..+.++.+|++++..++.+.||+.||+|+||.- T Consensus 7 ~~~~~~~lrF~~VG~~~t~V~~~~~~-ll~~~~~~~~~~A~~~a~~~~ii~sf~~N~~wTF~~~ 69 (139) T COG2246 7 KFTLSRLLRFAIVGGLGTLVDFAVLW-LLVKALGVPYALANAIAYEAAIIFSFVLNRRWTFRDR 69 (139) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEEEC T ss_conf 56899999996434299999999999-9998145658899999999999999999741267527 No 5 >pfam03818 MadM Malonate/sodium symporter MadM subunit. Probab=65.21 E-value=6.2 Score=17.59 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999998867205 Q gi|254780790|r 35 SRIFSIAVAFLVTWIPSRLFIFL 57 (129) Q Consensus 35 A~~ia~~~a~~~nf~lnr~~tF~ 57 (129) +...-.-+-+-.+|++.++.|++ T Consensus 15 tAFa~VG~~m~~S~~lS~~LT~G 37 (60) T pfam03818 15 TAFAVVGVTMYVSYLLSKYLTKG 37 (60) T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999888579 No 6 >COG4818 Predicted membrane protein [Function unknown] Probab=37.66 E-value=25 Score=14.46 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999962123008999999999999999999767 Q gi|254780790|r 67 TVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIR 118 (129) Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~i~~~~~~~~nf~~~k~ 118 (129) +.||+.+..........+...++...+.+...++..++...-..|-+-++|- T Consensus 30 FVrFHAmQS~ltF~~l~~l~ill~~iP~Ig~lls~~v~l~a~iLwlv~mykA 81 (105) T COG4818 30 FVRFHAMQSFLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMYKA 81 (105) T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1320369899999999999999998321599998089999999999999999 No 7 >PRK10621 hypothetical protein; Provisional Probab=37.49 E-value=25 Score=14.44 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=40.1 Q ss_pred HHHHHHHHHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999---9999571138999999999999999998867205788067999999999999999999 Q gi|254780790|r 10 NIVVVFFIDVMGFF---ILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSILN 81 (129) Q Consensus 10 vG~~~~~vd~~i~~---ll~~~g~~~~~A~~ia~~~a~~~nf~lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129) .|.++++..=+.+. .+...|.||..|+.-....+..-+.... +.|.++++..+++..+....+..+..+. T Consensus 25 AG~inaiAGGGglIt~PaLl~~Glpp~~AnaTNk~a~~~g~~~a~--~~~~r~~~~~~~~~~~~~~~~~iGa~~G 97 (269) T PRK10621 25 AGFIDSIAGGGGLLTIPALMAAGMSPAQALATNKLQACGGSFSAS--LYFIRRKVVNLKDQKLNIAMTFVGSMSG 97 (269) T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 998887706618999999998799889998874899997789999--9998614676889999999999999999 No 8 >PRK09917 hypothetical protein; Provisional Probab=32.31 E-value=31 Score=13.99 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999957113899999999999999999886720 Q gi|254780790|r 10 NIVVVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIF 56 (129) Q Consensus 10 vG~~~~~vd~~i~~ll~~~g~~~~~A~~ia~~~a~~~nf~lnr~~tF 56 (129) .-++...+.+++++++.+.|.+...|+.+|-.+-...+-.+-|++.. T Consensus 37 ~~al~Gaig~~~r~~l~~~g~~i~~atf~aA~~vg~i~~~~ar~~~~ 83 (157) T PRK09917 37 WCALLGAIGHGSRMLMMTSGLNIEWSTFMASMLVGTIGIQWSRWYLA 83 (157) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999839839999999999999999999998649 No 9 >TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane. Probab=29.43 E-value=35 Score=13.72 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9789999999999999999999999 Q gi|254780790|r 1 MKQCIIFIINIVVVFFIDVMGFFIL 25 (129) Q Consensus 1 lrql~rF~ivG~~~~~vd~~i~~ll 25 (129) ||||+||.|+.=+|=++-......| T Consensus 605 mKqFIRYmISSNIGEVv~IFlt~aL 629 (800) T TIGR01116 605 MKQFIRYMISSNIGEVVSIFLTSAL 629 (800) T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 3246566552222899999999987 No 10 >pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function. Probab=25.10 E-value=43 Score=13.29 Aligned_cols=85 Identities=8% Similarity=0.070 Sum_probs=38.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999999999886720578806799999999999999999---999999999-62123008999999999999 Q gi|254780790|r 34 YSRIFSIAVAFLVTWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSIL---NYAFYVKLL-LTFQGLQPLLATVLSAVSSM 109 (129) Q Consensus 34 ~A~~ia~~~a~~~nf~lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~-~~~~~~~~~~a~~i~~~~~~ 109 (129) ++-++...+|...-+..++..+=..++++....+.++..+..++..+ -..+...+. .-.+.++|+.- ++--+++. T Consensus 113 ~tlil~~~~gG~~m~~~~~~l~~~~~~k~kr~~~~k~i~~~~~~~v~w~~~~~~~~~lP~~INP~Lp~~v~-iiigaia~ 191 (206) T pfam06570 113 TTLLLTSLVGGLAMYYMYRYLYRYLKDKSKRPPWWKSLLILVLAVVVWMAVFTLTSMLPPVINPVLPPWVY-IIIGAIAF 191 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHHHH T ss_conf 99999999999999999999641335653242299999999999999999999999761225889866999-99999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999997679 Q gi|254780790|r 110 LFVFLLYIRF 119 (129) Q Consensus 110 ~~nf~~~k~~ 119 (129) ...|+..|++ T Consensus 192 ~~r~~lkkky 201 (206) T pfam06570 192 GVRYYLKKKY 201 (206) T ss_pred HHHHHHHHHH T ss_conf 9999999972 No 11 >pfam05957 DUF883 Bacterial protein of unknown function (DUF883). This family consists of several hypothetical bacterial proteins of unknown function. Probab=23.89 E-value=45 Score=13.17 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=23.2 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 62123008999999999999999999767 Q gi|254780790|r 90 LTFQGLQPLLATVLSAVSSMLFVFLLYIR 118 (129) Q Consensus 90 ~~~~~~~~~~a~~i~~~~~~~~nf~~~k~ 118 (129) ....+-+||-+..++.++++++.++++|+ T Consensus 66 d~yV~~~Pw~svgiAagvG~llG~Ll~RR 94 (94) T pfam05957 66 DDYVHENPWQAVGIAAGVGLLLGLLLARR 94 (94) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99998792999999999999999998259 No 12 >pfam07301 DUF1453 Protein of unknown function (DUF1453). This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales. Probab=21.83 E-value=50 Score=12.94 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=47.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 8999999999999999998867205788067-999999999999999999999999996212300899999999999999 Q gi|254780790|r 33 FYSRIFSIAVAFLVTWIPSRLFIFLKLRRKS-FLETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLF 111 (129) Q Consensus 33 ~~A~~ia~~~a~~~nf~lnr~~tF~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~i~~~~~~~~ 111 (129) ..--..|..+|.+++..+=+.-.|+.++++- .++--.|..+-.....+....- ....+..+.....+..--.+.+++. T Consensus 58 ~~e~~eA~~vG~lFSi~LI~Ts~fE~r~~~IY~kRSkAF~~ili~LlviR~~~k-~~i~~~id~~~~~gmF~lLAfgmIv 136 (149) T pfam07301 58 GWEVLEAAIVGLLFSIFLIKTSKFEIRDGDIYLKRSKAFIFILIGLLVIRIALK-IYLSNSIDPGELSGMFYLLAFGMIV 136 (149) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEECHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999981523897887898622219999999999999999-9997268898999999999999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999976799867 Q gi|254780790|r 112 VFLLYIRFMTRR 123 (129) Q Consensus 112 nf~~~k~~vFrk 123 (129) -+=..-+.-||| T Consensus 137 PWRIamy~kyrk 148 (149) T pfam07301 137 PWRIAMYIKYRK 148 (149) T ss_pred HHHHHHHHHHHC T ss_conf 999999999860 No 13 >pfam08566 Pam17 Mitochondrial import protein Pam17. The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins. Probab=21.03 E-value=52 Score=12.85 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=29.7 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9886720578806799999999999999999999999999-----62123008999999999999999999 Q gi|254780790|r 50 PSRLFIFLKLRRKSFLETVRYGVMYFMLSILNYAFYVKLL-----LTFQGLQPLLATVLSAVSSMLFVFLL 115 (129) Q Consensus 50 lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~~a~~i~~~~~~~~nf~~ 115 (129) ||.++..+.+++ ..+.......++.+.......+.... -..+|++|+....++.+....+.|++ T Consensus 27 W~~ff~LRk~rR--r~~~~~si~t~l~~~~~~~~yl~~~~~D~~~~~I~GlDP~~~~g~~~~a~~~~G~L~ 95 (174) T pfam08566 27 WNSFFKLRKQRR--RINTGSSVFTALGGAFAGLAYLSTLEIDSPTQQIMGLDPFMVLGLATIACGALGWLL 95 (174) T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 799999999866--785573899999987778998634333542030138588999999999974255751 Done!