Query gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 107 out of 1040
Neff 7.8
Searched_HMMs 23785
Date Mon May 30 13:11:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780790.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0d_A CTSR; protein DNA compl 5.2 96 0.0041 10.4 -0.4 14 45-58 40-53 (155)
2 1rh5_B Preprotein translocase 4.7 1.3E+02 0.0055 9.7 3.6 25 57-81 24-48 (74)
3 3few_X Colicin S4; cell lysis, 4.3 1.5E+02 0.0062 9.4 5.4 20 101-120 468-487 (505)
4 2ksf_A Sensor protein KDPD; me 4.0 1.6E+02 0.0067 9.2 2.9 37 39-75 57-94 (107)
5 3mp7_B Preprotein translocase 3.6 1.8E+02 0.0077 8.9 3.5 25 56-80 19-43 (61)
6 2knc_A Integrin alpha-IIB; tra 3.4 2E+02 0.0083 8.8 3.6 27 98-124 16-42 (54)
7 2k1a_A Integrin alpha-IIB; sin 3.4 2E+02 0.0084 8.7 1.8 26 98-123 14-39 (42)
8 1ldd_A APC2WHB, anaphase promo 2.6 2.7E+02 0.011 8.0 2.2 14 35-48 7-20 (74)
9 2wwb_B SEC61gamma, protein tra 2.6 2.8E+02 0.012 8.0 2.8 34 47-80 13-46 (68)
10 1akh_A Protein (mating-type pr 2.5 2.9E+02 0.012 7.9 1.4 20 34-53 38-57 (61)
No 1
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=5.22 E-value=96 Score=10.36 Aligned_cols=14 Identities=7% Similarity=0.320 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999988672057
Q gi|254780790|r 45 LVTWIPSRLFIFLK 58 (129)
Q Consensus 45 ~~nf~lnr~~tF~~ 58 (129)
=.||+++-+||=.+
T Consensus 40 QINYVl~TRFT~e~ 53 (155)
T 3h0d_A 40 QINYVINTRFTLER 53 (155)
T ss_dssp HHHHHHHHHSSGGG
T ss_pred CCCEEECCCCCCCC
T ss_conf 27266546646988
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.71 E-value=1.3e+02 Score=9.67 Aligned_cols=25 Identities=16% Similarity=-0.010 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5788067999999999999999999
Q gi|254780790|r 57 LKLRRKSFLETVRYGVMYFMLSILN 81 (129)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
+.-+++.+.|+.+-.-++.++.++-
T Consensus 24 k~~~KP~~~Ef~~i~k~~~iG~~i~ 48 (74)
T 1rh5_B 24 LVLKKPTKDEYLAVAKVTALGISLL 48 (74)
T ss_dssp HSEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9944998999999999999999999
No 3
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=4.28 E-value=1.5e+02 Score=9.40 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999976799
Q gi|254780790|r 101 TVLSAVSSMLFVFLLYIRFM 120 (129)
Q Consensus 101 ~~i~~~~~~~~nf~~~k~~v 120 (129)
-+++.++...+..++...++
T Consensus 468 ~i~~~~~~~~~~~~i~~~~~ 487 (505)
T 3few_X 468 GIVGILLAAVVGALLDDKFA 487 (505)
T ss_dssp HHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHHHHHCHHHH
T ss_conf 99999999999998378999
No 4
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=4.02 E-value=1.6e+02 Score=9.23 Aligned_cols=37 Identities=3% Similarity=-0.170 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999-98867205788067999999999999
Q gi|254780790|r 39 SIAVAFLVTWI-PSRLFIFLKLRRKSFLETVRYGVMYF 75 (129)
Q Consensus 39 a~~~a~~~nf~-lnr~~tF~~~~~~~~~~~~~~~~~~~ 75 (129)
+...+...||+ .--+++|+-.+.+.+-...-|..+++
T Consensus 57 s~ls~l~~nyff~~P~~sf~v~~~~~~~~~~~f~~va~ 94 (107)
T 2ksf_A 57 TVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGL 94 (107)
T ss_dssp HHHHHHHHHHTTSCSSCTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 99999999975227766211358037999999999999
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=3.59 E-value=1.8e+02 Score=8.91 Aligned_cols=25 Identities=20% Similarity=0.184 Sum_probs=12.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0578806799999999999999999
Q gi|254780790|r 56 FLKLRRKSFLETVRYGVMYFMLSIL 80 (129)
Q Consensus 56 F~~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
.+.-+++.++|+.+-.-++.++..+
T Consensus 19 lk~~~KP~~~Ef~~i~k~~~iG~~i 43 (61)
T 3mp7_B 19 FLVTKKPNWATYKRAAKITGLGIIL 43 (61)
T ss_dssp HHHSCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9982699999999999999999999
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=3.39 E-value=2e+02 Score=8.76 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999767998676
Q gi|254780790|r 98 LLATVLSAVSSMLFVFLLYIRFMTRRV 124 (129)
Q Consensus 98 ~~a~~i~~~~~~~~nf~~~k~~vFrk~ 124 (129)
.+|-+.+..+.+++.|.+.|.==|||-
T Consensus 16 ivsv~~GlLlL~ll~~~LwK~GFFKR~ 42 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999982731267
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=3.36 E-value=2e+02 Score=8.74 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999976799867
Q gi|254780790|r 98 LLATVLSAVSSMLFVFLLYIRFMTRR 123 (129)
Q Consensus 98 ~~a~~i~~~~~~~~nf~~~k~~vFrk 123 (129)
.+|-+.+....+...|.+.|.==|||
T Consensus 14 ivsv~~Gll~L~ll~~~lwKcGFFKR 39 (42)
T 2k1a_A 14 LVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999998273246
No 8
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=2.58 E-value=2.7e+02 Score=8.02 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780790|r 35 SRIFSIAVAFLVTW 48 (129)
Q Consensus 35 A~~ia~~~a~~~nf 48 (129)
-...+|++|++.|+
T Consensus 7 q~~~~yI~GMLtN~ 20 (74)
T 1ldd_A 7 QRSLPFIEGMLTNL 20 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999767
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=2.56 E-value=2.8e+02 Score=8.00 Aligned_cols=34 Identities=3% Similarity=0.017 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999886720578806799999999999999999
Q gi|254780790|r 47 TWIPSRLFIFLKLRRKSFLETVRYGVMYFMLSIL 80 (129)
Q Consensus 47 nf~lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
.|.-+....-+.-+++..+|+.+-.-...++..+
T Consensus 13 ~F~kds~~~vkrC~KPdrkEf~ki~~a~~iGf~i 46 (68)
T 2wwb_B 13 QFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAI 46 (68)
T ss_dssp HHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999989999992499989999999999984999
No 10
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=2.46 E-value=2.9e+02 Score=7.89 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999886
Q gi|254780790|r 34 YSRIFSIAVAFLVTWIPSRL 53 (129)
Q Consensus 34 ~A~~ia~~~a~~~nf~lnr~ 53 (129)
+|..++....-+-+|+-|++
T Consensus 38 LA~~~gl~~~qV~~WF~NrR 57 (61)
T 1akh_A 38 VAKKCGITPLQVRVWFINKR 57 (61)
T ss_dssp HHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCC
T ss_conf 99997869888248304004
Done!