Query gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 107 out of 1040
Neff 7.8
Searched_HMMs 13730
Date Wed Jun 1 06:57:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780790.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bmfa1 c.37.1.14 (A:483-618) 3.2 83 0.006 9.5 -0.9 28 28-59 58-85 (136)
2 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.7 1.5E+02 0.011 8.1 3.2 19 63-81 20-38 (56)
3 d1ldda_ a.4.5.34 (A:) Anaphase 2.3 1.8E+02 0.013 7.7 2.2 14 35-48 7-20 (74)
4 d1t56a1 a.4.1.9 (A:22-94) Ethr 2.1 1.4E+02 0.01 8.2 -0.7 14 35-48 30-43 (73)
5 d1x2na1 a.4.1.1 (A:6-67) Homeo 1.9 2.3E+02 0.017 7.2 1.3 18 35-52 39-56 (62)
6 d1ui5a1 a.4.1.9 (A:5-75) A-fac 1.8 1.7E+02 0.012 7.8 -0.7 14 35-48 32-45 (71)
7 d1rh5b_ f.23.28.1 (B:) Preprot 1.8 2.4E+02 0.018 7.0 4.8 33 49-81 5-37 (56)
8 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 1.8 2E+02 0.015 7.5 -0.5 24 34-57 54-77 (80)
9 d2i10a1 a.4.1.9 (A:10-78) Puta 1.7 2.5E+02 0.018 7.0 -0.0 18 100-117 27-44 (69)
10 d2gfna1 a.4.1.9 (A:4-80) Proba 1.7 2E+02 0.014 7.5 -0.6 19 99-117 32-50 (77)
No 1
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=3.18 E-value=83 Score=9.46 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=14.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 57113899999999999999999886720578
Q gi|254780790|r 28 CGADPFYSRIFSIAVAFLVTWIPSRLFIFLKL 59 (129)
Q Consensus 28 ~g~~~~~A~~ia~~~a~~~nf~lnr~~tF~~~ 59 (129)
...++.+| +-+|....=+..|+|+|...
T Consensus 58 ~D~p~WLA----w~VA~~g~~~~DR~W~f~Gp 85 (136)
T d2bmfa1 58 GDLPVWLA----YRVAAEGINYADRRWCFDGV 85 (136)
T ss_dssp SCCCHHHH----HHHHHTTCCTTCGGGGTCSC
T ss_pred CCCCHHHH----HHHHHCCCCCCCCCEECCCC
T ss_conf 59956562----89887579755462010389
No 2
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.67 E-value=1.5e+02 Score=8.11 Aligned_cols=19 Identities=11% Similarity=-0.139 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999
Q gi|254780790|r 63 SFLETVRYGVMYFMLSILN 81 (129)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~ 81 (129)
..++.+.|+.+..++.+-.
T Consensus 20 ~~~r~fsY~mvGs~g~~~a 38 (56)
T d3cx5e2 20 DKGRSYAYFMVGAMGLLSS 38 (56)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEHHHHHHH
T ss_conf 6554678875402578999
No 3
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.33 E-value=1.8e+02 Score=7.75 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780790|r 35 SRIFSIAVAFLVTW 48 (129)
Q Consensus 35 A~~ia~~~a~~~nf 48 (129)
-...+|++|++.|+
T Consensus 7 q~~w~yI~gMLtN~ 20 (74)
T d1ldda_ 7 QRSLPFIEGMLTNL 20 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999667
No 4
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.14 E-value=1.4e+02 Score=8.23 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780790|r 35 SRIFSIAVAFLVTW 48 (129)
Q Consensus 35 A~~ia~~~a~~~nf 48 (129)
|...+..-+.+.+|
T Consensus 30 a~~agvs~~t~Y~~ 43 (73)
T d1t56a1 30 AKGAGISRPTFYFY 43 (73)
T ss_dssp HHHHTCCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
T ss_conf 99869888899888
No 5
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.90 E-value=2.3e+02 Score=7.21 Aligned_cols=18 Identities=6% Similarity=0.218 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999988
Q gi|254780790|r 35 SRIFSIAVAFLVTWIPSR 52 (129)
Q Consensus 35 A~~ia~~~a~~~nf~lnr 52 (129)
|..++....-+-+|+-|+
T Consensus 39 a~~~~l~~~qI~~WF~N~ 56 (62)
T d1x2na1 39 AAQTNLTLLQVNNWFINA 56 (62)
T ss_dssp HHHHTCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
T ss_conf 999890999937988998
No 6
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.85 E-value=1.7e+02 Score=7.84 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780790|r 35 SRIFSIAVAFLVTW 48 (129)
Q Consensus 35 A~~ia~~~a~~~nf 48 (129)
|...+..-+.+.+|
T Consensus 32 a~~agvs~~~~y~~ 45 (71)
T d1ui5a1 32 VAHAGVTKGALYFH 45 (71)
T ss_dssp HHHHTCCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
T ss_conf 99879487699989
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.79 E-value=2.4e+02 Score=7.05 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=18.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998867205788067999999999999999999
Q gi|254780790|r 49 IPSRLFIFLKLRRKSFLETVRYGVMYFMLSILN 81 (129)
Q Consensus 49 ~lnr~~tF~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
+-...=+.+..+++.++|+.+-..++.++..+-
T Consensus 5 ~~es~Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~ 37 (56)
T d1rh5b_ 5 IEECRRVWLVLKKPTKDEYLAVAKVTALGISLL 37 (56)
T ss_dssp HHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999965998899999999999999999
No 8
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=1.77 E-value=2e+02 Score=7.50 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999998867205
Q gi|254780790|r 34 YSRIFSIAVAFLVTWIPSRLFIFL 57 (129)
Q Consensus 34 ~A~~ia~~~a~~~nf~lnr~~tF~ 57 (129)
+|.-++.--..+-.|+=|++...+
T Consensus 54 la~~~gl~~~~i~vWFqN~R~~~k 77 (80)
T d1wh7a_ 54 FCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp HHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred HHHHHCCCHHHEEEECCCCCCCCC
T ss_conf 999978898895100303767788
No 9
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=1.75 E-value=2.5e+02 Score=6.99 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999976
Q gi|254780790|r 100 ATVLSAVSSMLFVFLLYI 117 (129)
Q Consensus 100 a~~i~~~~~~~~nf~~~k 117 (129)
|.-.++--+++++|+.+|
T Consensus 27 a~~agvs~~~~Y~~F~~K 44 (69)
T d2i10a1 27 TKALGINPPSLYAAFGSK 44 (69)
T ss_dssp HHHHTCCHHHHHHHHCSH
T ss_pred HHHHCCCHHHHHHHCCCH
T ss_conf 998687862998888599
No 10
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=1.74 E-value=2e+02 Score=7.54 Aligned_cols=19 Identities=11% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999976
Q gi|254780790|r 99 LATVLSAVSSMLFVFLLYI 117 (129)
Q Consensus 99 ~a~~i~~~~~~~~nf~~~k 117 (129)
+|+-.++.-+++++|+-+|
T Consensus 32 Ia~~agvs~~~lY~~F~~K 50 (77)
T d2gfna1 32 VAEESGWSTGVLNHYFGSR 50 (77)
T ss_dssp HHHHHSSCHHHHHHHTSSH
T ss_pred HHHHHCCCHHHHHHHCCCH
T ss_conf 9998788877998888399
Done!