BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780790|ref|YP_003065203.1| hypothetical protein
CLIBASIA_03405 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 129

 Score =  251 bits (641), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MKQCIIFIINIVVVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLR 60
           MKQCIIFIINIVVVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLR
Sbjct: 1   MKQCIIFIINIVVVFFIDVMGFFILMKCGADPFYSRIFSIAVAFLVTWIPSRLFIFLKLR 60

Query: 61  RKSFLETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFM 120
           RKSFLETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFM
Sbjct: 61  RKSFLETVRYGVMYFMLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYIRFM 120

Query: 121 TRRVYFIKK 129
           TRRVYFIKK
Sbjct: 121 TRRVYFIKK 129


>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 185

 Score = 26.9 bits (58), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 64  FLETVRYGVMYF------MLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYI 117
           F+ET +    Y+      + + + + + + L+LT QGL PL       V+S+        
Sbjct: 67  FIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEA 126

Query: 118 RFMTRRV 124
             + RR+
Sbjct: 127 ELIQRRI 133


>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 186

 Score = 26.9 bits (58), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 64  FLETVRYGVMYF------MLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYI 117
           F+ET +    Y+      + + + + + + L+LT QGL PL       V+S+        
Sbjct: 67  FIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEA 126

Query: 118 RFMTRRV 124
             + RR+
Sbjct: 127 ELIQRRI 133


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 702

 Score = 23.1 bits (48), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 48 WIPSRLFIFLK 58
          W P RLF++LK
Sbjct: 47 WTPHRLFLYLK 57


>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 418

 Score = 21.9 bits (45), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 11 IVVVFFIDVMGFFILMKCGADPFYSRI 37
          +V VF+ D     +L K GAD  + R+
Sbjct: 62 LVSVFYKDSEATLMLYKYGADYAFDRV 88


>gi|254781174|ref|YP_003065587.1| outer membrane assembly lipoprotein YfiO [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 271

 Score = 21.6 bits (44), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 9/11 (81%), Positives = 9/11 (81%)

Query: 38 FSIAVAFLVTW 48
          FSIAV FLV W
Sbjct: 28 FSIAVCFLVGW 38


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.345    0.153    0.464 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,893
Number of Sequences: 1233
Number of extensions: 2734
Number of successful extensions: 21
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 16
length of query: 129
length of database: 328,796
effective HSP length: 65
effective length of query: 64
effective length of database: 248,651
effective search space: 15913664
effective search space used: 15913664
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 33 (17.3 bits)