HHsearch alignment for GI: 254780791 and conserved domain: COG1570
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair].
Probab=97.04 E-value=0.061 Score=37.47 Aligned_cols=340 Identities=18% Similarity=0.204 Sum_probs=176.0
Q ss_pred CCCCCCCCC-EEEEEEEEEEE--CCCCEEEEEEEEEEECCCCHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCC---EE
Q ss_conf 866814598-89999996675--28843799999710168007999-9999999765401226100163102652---89
Q gi|254780791|r 76 IEFLPEEGI-EFLVIGKITTF--PGSSKYQIIIESLIPSGSGTLLT-ALEKRKKKLLEEGLFSDQHKNPIPFIPK---II 148 (529)
Q Consensus 76 ~~~~~~~G~-~v~~~g~~~~y--~~~g~~ql~v~~i~~~g~G~l~~-~~e~lk~~L~~eGlfd~~~k~~lP~~p~---~i 148 (529)
T Consensus 15 ik~llE~~~~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~f~-p~eG~~V~v~G-~is~Y~~rG~YQ 92 (440)
T COG1570 15 IKRLLERDLGQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLKFR-PEEGMQVLVRG-KISLYEPRGDYQ 92 (440)
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCC-CCCCCEEEEEE-EEEEECCCCCEE
T ss_conf 9999984078599999963776688860799971677168999974700026878-66798899997-788876988569
Q ss_pred EEEECCCHHHHHHHHHHHH---H-----------C------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9984784258999999863---0-----------5------975899972100111103679999999974100357677
Q gi|254780791|r 149 AVITSPTGAVIRDILQRIS---C-----------R------FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPR 208 (529)
Q Consensus 149 ~vits~~~a~~~D~~~~~~---~-----------r------~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~ 208 (529)
T Consensus 93 i~~~~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~--tgAairDI---l~~~~rR~-----P~ 162 (440)
T COG1570 93 IVAESMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSP--TGAALRDI---LHTLSRRF-----PS 162 (440)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCC--CHHHHHHH---HHHHHHHC-----CC
T ss_conf 9983278287258999999999999867786832269999998868998187--05899999---99987538-----88
Q ss_pred CCEEEE---ECCCCCHHHHHHCCHHHHHHHHHHCC-----CEEEEEECC---C-----CCCHHHHHHHCCCCCCCHHHHH
Q ss_conf 758999---51688844422007699999997489-----048852057---7-----7525898864123777214567
Q gi|254780791|r 209 PDIIIL---ARGGGSIEDLWHFNDEMIVRAIANSS-----IPIISAIGH---E-----TDWTLADYAADLRAPTPTGAAE 272 (529)
Q Consensus 209 ~D~iii---~RGGGS~eDL~~FN~e~laraI~~~~-----iPVisgIGH---E-----~D~Tl~D~VAD~Ra~TPTaAAE 272 (529)
T Consensus 163 ~~viv~pt~VQG~~A~~--------eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVG- 233 (440)
T COG1570 163 VEVIVYPTLVQGEGAAE--------EIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVG- 233 (440)
T ss_pred CEEEEEECCCCCCCCHH--------HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCEEEECC-
T ss_conf 72999821441787099--------999999986345899889991686348888615809999999807998584066-
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63323467776699999888778998889999855677653049788986788878886545689999998756889999
Q gi|254780791|r 273 MAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNH 352 (529)
Q Consensus 273 lavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~~~~~~L~~~~QrLd~~~~rL~~~l~~~l~~~~~~l~~ 352 (529)
T Consensus 234 ------HEtD~tL~DfVAD~RApTPT-----------aAAE~~vP~--~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~ 294 (440)
T COG1570 234 ------HETDFTLADFVADLRAPTPT-----------AAAELVVPD--SAELLQQLDQLQRRLHRALRRLLDQKKQRLEH 294 (440)
T ss_pred ------CCCCCCHHHHHHHCCCCCCH-----------HHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------67775287764313479966-----------878885878--99999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98410113468899999999999999999887655567888877677777887502688999999999999999999999
Q gi|254780791|r 353 IINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILS 432 (529)
Q Consensus 353 ~~~rL~~~~~~~~l~~~r~~L~~~q~~L~q~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~l~~l~~rL~~~~~ 432 (529)
T Consensus 295 l~~~l~~~~p~~~l~~~~q~ld~~~~rL~~~l~~~~~~~~~~~~~-----------l~~rl~~~---~~~~~~~~~~~~~ 360 (440)
T COG1570 295 LARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLER-----------LTQRLNPQ---IQRQQQRLQQLER 360 (440)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH---HHHHHHHHHHHHH
T ss_conf 998776449788998999999999999999999999998888877-----------77777788---9888888888998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCC
Q ss_conf 999999999999999887169677731461999848988
Q gi|254780791|r 433 HKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNN 471 (529)
Q Consensus 433 ~~L~~~~~rL~~l~~~L~slsP~~~L~RGYaiv~~~~Gk 471 (529)
T Consensus 361 ~l~~~~~~~l~~~~~~l~~l~-~~L~~Lsp~~~L-~RGy 397 (440)
T COG1570 361 RLDKALRRQLKRKRERLEALV-EQLESLSPLATL-ARGY 397 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHH-HCCE
T ss_conf 888999999999999999999-999717914566-4744