HHsearch alignment for GI: 254780791 and conserved domain: COG1571

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only].

Probab=94.00  E-value=0.33  Score=30.94  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC--CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             17189999970543568886279998748947999997352105--8668145988999999667528843799999710
Q gi|254780791|r   32 LSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK--IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLI  109 (529)
Q Consensus        32 ~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~--~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~  109 (529)
T Consensus       266 ~~~~~v~g~v~~~p~~ieGghv~v~i~d~~G~I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~---~---~n~ek~~  339 (421)
T COG1571         266 YSKYRVVGRVEAEPRAIEGGHVVVEITDGEGEIGAVAFEPTKEFRELARKLIPGDEITVYGSVKPG---T---LNLEKFQ  339 (421)
T ss_pred             CCCEEEEEEEECCCEEEECCEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCC---C---EEEEEEE
T ss_conf             343289999812318963887999961898169999963555225789856899989980574566---2---3689999


Q ss_pred             ECCCC
Q ss_conf             16800
Q gi|254780791|r  110 PSGSG  114 (529)
Q Consensus       110 ~~g~G  114 (529)
T Consensus       340 v~~l~  344 (421)
T COG1571         340 VLKLA  344 (421)
T ss_pred             EEEEE
T ss_conf             99866