HHsearch alignment for GI: 254780791 and conserved domain: TIGR00237
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit; InterPro: IPR003753 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones . Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N-terminus.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex.
Probab=100.00 E-value=0 Score=563.32 Aligned_cols=434 Identities=34% Similarity=0.594 Sum_probs=395.6
Q ss_pred CHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 2999999999997400--17189999970543568886279998748947999997352105866814598899999966
Q gi|254780791|r 16 SVSELSYHLKHIVESN--LSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT 93 (529)
Q Consensus 16 svs~l~~~i~~~l~~~--~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~ 93 (529)
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~w~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (441)
T TIGR00237 1 TVSELNAYIKALLEGDPHFLQVWLKGELSNLTIQPVSGHWYFTLKDEKAQVRCVLFRGNNERLPFRPENGQEVLVRGGIS 80 (441)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEE
T ss_conf 90146799998750586300146510002115654045068875033103455544211223310224673566651604
Q ss_pred EECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-E
Q ss_conf 752884379999971016800799999999997654012261001631026528999847842589999998630597-5
Q gi|254780791|r 94 TFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-L 172 (529)
Q Consensus 94 ~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-~ 172 (529)
T Consensus 81 ~~~p~g~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~g~~~~~~g~~~~d~~~~~~~~~p~~ 160 (441)
T TIGR00237 81 LYEPRGDYQLIAEELEPAGEGLLQLAYEELKEKLAAEGLFDEEYKKPLPHFPKAVGVITSPTGAALADVLHILKRRDPLL 160 (441)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 64137761477630265420478999999998765302001231135765200112332453046899999875115542
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 89997210011110367999999997410035767775899951688844422007699999997489048852057775
Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETD 252 (529)
Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D 252 (529)
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~g~ggg~~~~~w~~~~~~~~~~~~~~~~~~~~~~g~~~d 238 (441)
T TIGR00237 161 KVVILPTLVQGEGAPGSIVESIELANSFHDEK--NECDVLIVGRGGGSLEDLWSFNDEKVARALFLSKLPIISAVGHETD 238 (441)
T ss_pred EEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 00121001225540689999888642100011--1000557605786324554022467777777531002210144210
Q ss_pred CHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHH
Q ss_conf 258988641237772145676332346777669999988877899888999985567765304--978898678887888
Q gi|254780791|r 253 WTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALP--NSDQTLSCSRYRLDR 330 (529)
Q Consensus 253 ~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~--~~~~~L~~~~QrLd~ 330 (529)
T Consensus 239 ~~~~d~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (441)
T TIGR00237 239 FTLSDFVADLRAPTPSGAAELLLPNSDELLERLDGAEVRLDRAFDTLLGQKKGRLEQLAASLKRLHPENKLALKELKLEK 318 (441)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04666666530357420033321444789987523567888899988644467899999998752056778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65456899999987568899999841011346889999999999999999988765556788887767777788750268
Q gi|254780791|r 331 LPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTK 410 (529)
Q Consensus 331 ~~~rL~~~l~~~l~~~~~~l~~~~~rL~~~~~~~~l~~~r~~L~~~q~~L~q~~~~~l~~~~~~~~~~~~~l~~l~~~~~ 410 (529)
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~ 351 (441)
T TIGR00237 319 LEKRLQAALNKLLERTGQKLTRLTKRLEQL-----------------------------------------------NPS 351 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------CCC
T ss_conf 999999999888765556788888887640-----------------------------------------------653
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEE-CCCCCEECCHHHCCCCCEEEEE
Q ss_conf 8-9999999999999999999999999999999999998871696777314619998-4898895777892999869999
Q gi|254780791|r 411 N-RIFYLHTHIKKLITRIEFILSHKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQ-DTNNNFITQKRNLATKTRILIN 488 (529)
Q Consensus 411 ~-~l~~~~~~l~~l~~rL~~~~~~~L~~~~~rL~~l~~~L~slsP~~~L~RGYaiv~-~~~GkiI~s~~~l~~gd~i~i~ 488 (529)
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (441)
T TIGR00237 352 PYKLLRAQTRLEELNNRLNALLNAQLNLLLPQFGTLLGKLNALSPLEVLARGYSLALSNPEGKALKSVKQVDEGDRLTTK 431 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHEE
T ss_conf 14566776678888889988877777665677788775421001456763132000035310356666643111221001
Q ss_pred EECEEEEEEE
Q ss_conf 9110999999
Q gi|254780791|r 489 FFDGQANAIV 498 (529)
Q Consensus 489 l~DG~v~a~V 498 (529)
T Consensus 432 ~~dg~~~~~~ 441 (441)
T TIGR00237 432 LKDGWLTSEV 441 (441)
T ss_pred ECCCEEEECC
T ss_conf 0054112049