HHsearch alignment for GI: 254780791 and conserved domain: TIGR00237

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit; InterPro: IPR003753 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones . Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N-terminus.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex.
Probab=100.00  E-value=0  Score=563.32  Aligned_cols=434  Identities=34%  Similarity=0.594  Sum_probs=395.6

Q ss_pred             CHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             2999999999997400--17189999970543568886279998748947999997352105866814598899999966
Q gi|254780791|r   16 SVSELSYHLKHIVESN--LSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT   93 (529)
Q Consensus        16 svs~l~~~i~~~l~~~--~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~   93 (529)
T Consensus         1 ~~~~~~~~~~~~~~~~p~~~~~w~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (441)
T TIGR00237         1 TVSELNAYIKALLEGDPHFLQVWLKGELSNLTIQPVSGHWYFTLKDEKAQVRCVLFRGNNERLPFRPENGQEVLVRGGIS   80 (441)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEE
T ss_conf             90146799998750586300146510002115654045068875033103455544211223310224673566651604


Q ss_pred             EECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-E
Q ss_conf             752884379999971016800799999999997654012261001631026528999847842589999998630597-5
Q gi|254780791|r   94 TFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-L  172 (529)
Q Consensus        94 ~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-~  172 (529)
T Consensus        81 ~~~p~g~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~g~~~~~~g~~~~d~~~~~~~~~p~~  160 (441)
T TIGR00237        81 LYEPRGDYQLIAEELEPAGEGLLQLAYEELKEKLAAEGLFDEEYKKPLPHFPKAVGVITSPTGAALADVLHILKRRDPLL  160 (441)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHEEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf             64137761477630265420478999999998765302001231135765200112332453046899999875115542


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             89997210011110367999999997410035767775899951688844422007699999997489048852057775
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETD  252 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D  252 (529)
T Consensus       161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~g~ggg~~~~~w~~~~~~~~~~~~~~~~~~~~~~g~~~d  238 (441)
T TIGR00237       161 KVVILPTLVQGEGAPGSIVESIELANSFHDEK--NECDVLIVGRGGGSLEDLWSFNDEKVARALFLSKLPIISAVGHETD  238 (441)
T ss_pred             EEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             00121001225540689999888642100011--1000557605786324554022467777777531002210144210


Q ss_pred             CHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHH
Q ss_conf             258988641237772145676332346777669999988877899888999985567765304--978898678887888
Q gi|254780791|r  253 WTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALP--NSDQTLSCSRYRLDR  330 (529)
Q Consensus       253 ~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~--~~~~~L~~~~QrLd~  330 (529)
T Consensus       239 ~~~~d~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (441)
T TIGR00237       239 FTLSDFVADLRAPTPSGAAELLLPNSDELLERLDGAEVRLDRAFDTLLGQKKGRLEQLAASLKRLHPENKLALKELKLEK  318 (441)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             04666666530357420033321444789987523567888899988644467899999998752056778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65456899999987568899999841011346889999999999999999988765556788887767777788750268
Q gi|254780791|r  331 LPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTK  410 (529)
Q Consensus       331 ~~~rL~~~l~~~l~~~~~~l~~~~~rL~~~~~~~~l~~~r~~L~~~q~~L~q~~~~~l~~~~~~~~~~~~~l~~l~~~~~  410 (529)
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~  351 (441)
T TIGR00237       319 LEKRLQAALNKLLERTGQKLTRLTKRLEQL-----------------------------------------------NPS  351 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------CCC
T ss_conf             999999999888765556788888887640-----------------------------------------------653


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEE-CCCCCEECCHHHCCCCCEEEEE
Q ss_conf             8-9999999999999999999999999999999999998871696777314619998-4898895777892999869999
Q gi|254780791|r  411 N-RIFYLHTHIKKLITRIEFILSHKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQ-DTNNNFITQKRNLATKTRILIN  488 (529)
Q Consensus       411 ~-~l~~~~~~l~~l~~rL~~~~~~~L~~~~~rL~~l~~~L~slsP~~~L~RGYaiv~-~~~GkiI~s~~~l~~gd~i~i~  488 (529)
T Consensus       352 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (441)
T TIGR00237       352 PYKLLRAQTRLEELNNRLNALLNAQLNLLLPQFGTLLGKLNALSPLEVLARGYSLALSNPEGKALKSVKQVDEGDRLTTK  431 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHEE
T ss_conf             14566776678888889988877777665677788775421001456763132000035310356666643111221001


Q ss_pred             EECEEEEEEE
Q ss_conf             9110999999
Q gi|254780791|r  489 FFDGQANAIV  498 (529)
Q Consensus       489 l~DG~v~a~V  498 (529)
T Consensus       432 ~~dg~~~~~~  441 (441)
T TIGR00237       432 LKDGWLTSEV  441 (441)
T ss_pred             ECCCEEEECC
T ss_conf             0054112049