HHsearch alignment for GI: 254780791 and conserved domain: cd04317
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=91.00 E-value=1.6 Score=24.85 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC--CCCCCCCEEEEEEEEEE--------ECCCCEEE
Q ss_conf 718999997054356888627999874894799999735210586--68145988999999667--------52884379
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE--FLPEEGIEFLVIGKITT--------FPGSSKYQ 102 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~--~~~~~G~~v~~~g~~~~--------y~~~g~~q 102 (529)
T Consensus 15 ~~V~v~GwV~~~R~--~gki~Fi~LRD~tg~iQ~v~~~~~~~~~~~~~~l~~EsvV~V~G~V~~r~~~~~n~~~~tGeiE 92 (135)
T cd04317 15 QEVTLCGWVQRRRD--HGGLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGTVNPKLPTGEIE 92 (135)
T ss_pred CEEEEEEEEEEEEE--CCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf 99999999999971--7979999985288358899957651678999718976799999999967976605665689779
Q ss_pred EEEEEEEEC
Q ss_conf 999971016
Q gi|254780791|r 103 IIIESLIPS 111 (529)
Q Consensus 103 l~v~~i~~~ 111 (529)
T Consensus 93 i~v~~i~il 101 (135)
T cd04317 93 VVASELEVL 101 (135)
T ss_pred EEEEEEEEE
T ss_conf 999799997