HHsearch alignment for GI: 254780791 and conserved domain: cd04317

>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=91.00  E-value=1.6  Score=24.85  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC--CCCCCCCEEEEEEEEEE--------ECCCCEEE
Q ss_conf             718999997054356888627999874894799999735210586--68145988999999667--------52884379
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE--FLPEEGIEFLVIGKITT--------FPGSSKYQ  102 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~--~~~~~G~~v~~~g~~~~--------y~~~g~~q  102 (529)
T Consensus        15 ~~V~v~GwV~~~R~--~gki~Fi~LRD~tg~iQ~v~~~~~~~~~~~~~~l~~EsvV~V~G~V~~r~~~~~n~~~~tGeiE   92 (135)
T cd04317          15 QEVTLCGWVQRRRD--HGGLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGTVNPKLPTGEIE   92 (135)
T ss_pred             CEEEEEEEEEEEEE--CCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf             99999999999971--7979999985288358899957651678999718976799999999967976605665689779


Q ss_pred             EEEEEEEEC
Q ss_conf             999971016
Q gi|254780791|r  103 IIIESLIPS  111 (529)
Q Consensus       103 l~v~~i~~~  111 (529)
T Consensus        93 i~v~~i~il  101 (135)
T cd04317          93 VVASELEVL  101 (135)
T ss_pred             EEEEEEEEE
T ss_conf             999799997