HHsearch alignment for GI: 254780791 and conserved domain: cd04483
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=95.21 E-value=0.24 Score=32.11 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=49.4
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC--------------------CCCCCCCCEEEEEEEEEEEC
Q ss_conf 9999705435688862799987489479999973521058--------------------66814598899999966752
Q gi|254780791|r 37 VRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI--------------------EFLPEEGIEFLVIGKITTFP 96 (529)
Q Consensus 37 v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~--------------------~~~~~~G~~v~~~g~~~~y~ 96 (529)
T Consensus 2 IlG~VVs~~ere--~f~~y~vDDgTGcI~Cv~W~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~l~iG~llRVRG~I~~y- 78 (92)
T cd04483 2 ILGTVVSRRERE--TFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTY- 78 (92)
T ss_pred EEEEEEEEEEEC--CEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEE-
T ss_conf 379999997605--71699860898669989960457677666678445444457888761157752389994268887-
Q ss_pred CCCEEEEEEEEE
Q ss_conf 884379999971
Q gi|254780791|r 97 GSSKYQIIIESL 108 (529)
Q Consensus 97 ~~g~~ql~v~~i 108 (529)
T Consensus 79 -Rg~rei~as~~ 89 (92)
T cd04483 79 -RGEREINASVV 89 (92)
T ss_pred -ECEEEEEEEEE
T ss_conf -04489968999