HHsearch alignment for GI: 254780791 and conserved domain: cd04484
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.93 E-value=0.092 Score=35.87 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=54.8
Q ss_pred CEEEEEEECCCCCC-CCCC-EEE-EEEECCCCEEEEEEECCCCCCCCCCC-CCCCEEEEEEEEEEECC-CCEEEEEEEEE
Q ss_conf 18999997054356-8886-279-99874894799999735210586681-45988999999667528-84379999971
Q gi|254780791|r 34 HVCVRGEISGYRGI-HSSG-HAY-FSLKDNHSRIDAIIWKGTLNKIEFLP-EEGIEFLVIGKITTFPG-SSKYQIIIESL 108 (529)
Q Consensus 34 ~~~v~gEis~~~~~-~~sG-H~Y-f~lkd~~a~i~~~~~~~~~~~~~~~~-~~G~~v~~~g~~~~y~~-~g~~ql~v~~i 108 (529)
T Consensus 1 nV~i~G~IF~~E~relk~gk~i~~~~iTD~t~Si~~K~F~~~~~~~~~~~~~~G~~v~v~G~v~-~D~f~~e~v~~~~~i 79 (82)
T cd04484 1 NVVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRKDEKDKEELKSKGDWVRVRGKVQ-YDTFSKELVLMINDI 79 (82)
T ss_pred CEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEE-ECCCCCCEEEECCEE
T ss_conf 9899999997898972489899999998088979999983585444566525897999999996-317877159981124
Q ss_pred EE
Q ss_conf 01
Q gi|254780791|r 109 IP 110 (529)
Q Consensus 109 ~~ 110 (529)
T Consensus 80 ~~ 81 (82)
T cd04484 80 EE 81 (82)
T ss_pred EE
T ss_conf 78