>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.

Probab=90.40 E-value=1.8 Score=24.44 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=56.4 Q ss_pred CCCEEEEEECC---CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 65289998478---425899999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 144 IPKIIAVITSP---TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 144 ~p~~i~vits~---~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) T Consensus 130 ~~k~igvlyn~~e~ns~~~~~~~~~~a~~~Gi~v~~~~v~-----~~~ei~~a~~~l~~--------~~Dal~~~~---- 192 (281) T cd06325 130 DAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVS-----SSNDVQQAAQSLAG--------KVDAIYVPT---- 192 (281) T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-----CHHHHHHHHHHHHH--------CCCEEEEEC---- T ss_conf 9858999957998656999999999999769889999459-----88899999997562--------589999918---- Q ss_pred HHHHHHC-CHHHHHHHHHHCCCEEEEE Q ss_conf 4442200-7699999997489048852 Q gi|254780791|r 221 IEDLWHF-NDEMIVRAIANSSIPIISA 246 (529) Q Consensus 221 ~eDL~~F-N~e~laraI~~~~iPVisg 246 (529) T Consensus 193 --d~~v~s~~~~i~~~a~~~~iPv~~~ 217 (281) T cd06325 193 --DNTVASAMEAVVKVANEAKIPVIAS 217 (281) T ss_pred --CCHHHHHHHHHHHHHHHCCCCEEEC T ss_conf --8127779999999998749988936

HHsearch alignment for GI: 254780791 and conserved domain: cd06325