HHsearch alignment for GI: 254780791 and conserved domain: pfam01442

>pfam01442 Apolipoprotein Apolipoprotein A1/A4/E domain. These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I, Apolipoprotein A-IV, and Apolipoprotein E.
Probab=94.39  E-value=0.62  Score=28.51  Aligned_cols=86  Identities=19%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76332346777669999988877899888999985567765304-97889867888788865456899999987568899
Q gi|254780791|r  272 EMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALP-NSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHF  350 (529)
Q Consensus       272 Elavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~-~~~~~L~~~~QrLd~~~~rL~~~l~~~l~~~~~~l  350 (529)
T Consensus        19 ~~l~P~t~~~~~~l~~~~~~lr~~l~~dleelr~~l~p~~~el~~~~~~~~eelr~~l~p~~~el~~~~~~~~eeLr~~l   98 (191)
T pfam01442        19 EQLGPYAQEFWAQLSKETEALREELQKDLEEVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRERLNRDAEELRRKL   98 (191)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77051689999888899999999998589999998789999999999989999999877789999998886599999999


Q ss_pred             HHHHHHH
Q ss_conf             9998410
Q gi|254780791|r  351 NHIINRI  357 (529)
Q Consensus       351 ~~~~~rL  357 (529)
T Consensus        99 ~~~~eel  105 (191)
T pfam01442        99 APYAEEL  105 (191)
T ss_pred             HHHHHHH
T ss_conf             9999999