HHsearch alignment for GI: 254780791 and conserved domain: pfam01442
>pfam01442 Apolipoprotein Apolipoprotein A1/A4/E domain. These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I, Apolipoprotein A-IV, and Apolipoprotein E.
Probab=94.39 E-value=0.62 Score=28.51 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=48.4
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76332346777669999988877899888999985567765304-97889867888788865456899999987568899
Q gi|254780791|r 272 EMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALP-NSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHF 350 (529)
Q Consensus 272 Elavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~-~~~~~L~~~~QrLd~~~~rL~~~l~~~l~~~~~~l 350 (529)
T Consensus 19 ~~l~P~t~~~~~~l~~~~~~lr~~l~~dleelr~~l~p~~~el~~~~~~~~eelr~~l~p~~~el~~~~~~~~eeLr~~l 98 (191)
T pfam01442 19 EQLGPYAQEFWAQLSKETEALREELQKDLEEVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRERLNRDAEELRRKL 98 (191)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77051689999888899999999998589999998789999999999989999999877789999998886599999999
Q ss_pred HHHHHHH
Q ss_conf 9998410
Q gi|254780791|r 351 NHIINRI 357 (529)
Q Consensus 351 ~~~~~rL 357 (529)
T Consensus 99 ~~~~eel 105 (191)
T pfam01442 99 APYAEEL 105 (191)
T ss_pred HHHHHHH
T ss_conf 9999999