HHsearch alignment of GI: 254780791 and MMDB domain: 1v1q_A_
>1v1q_A (A:) Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli}
Probab=95.05 E-value=0.38 Score=29.76 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=57.2
Q ss_pred CCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 71899999705---43568886--2799987------489------4799999735210586681459889999996675
Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF 95 (529)
Q Consensus 33 ~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y 95 (529)
..|-+.|.|+. ++. -.+| .+-|+|. |.+ -.|+|++|...+..+.-.++.|+.|.|.|++..+
T Consensus 20 N~v~L~G~l~~dpelR~-Tp~G~~v~~f~La~~s~~~e~g~~r~~~~~i~vv~~G~~Ae~~~~~l~KG~~V~V~G~L~~~ 98 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH 98 (134)
T ss_dssp EEEEEEEEEEEEEEEEE-CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEEEEEEEEEEE
T ss_conf 08999999777864569-99997699999841120035655213579999999959999998752889999999998860
Q ss_pred CC---CCEEEEEEEEEEECC
Q ss_conf 28---843799999710168
Q gi|254780791|r 96 PG---SSKYQIIIESLIPSG 112 (529)
Q Consensus 96 ~~---~g~~ql~v~~i~~~g 112 (529)
.- .+++-|.|+.|+.-+
T Consensus 99 ~~kn~~~k~vl~a~~iefLd 118 (134)
T 1v1q_A 99 KAKNGLSKMVLHAEQIELID 118 (134)
T ss_dssp CTTTTSCEEEEEEEEEEETT
T ss_pred ECCCCCCEEEEEEEEEEECC
T ss_conf 05289967999998999901