HHsearch alignment of GI: 254780791 and MMDB domain: 1x54_A_1-108
>1x54_A (A:1-108) Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=94.15 E-value=0.27 Score=31.18 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=62.8
Q ss_pred HHCC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEEEEEEEEEEEC-CCCEEE
Q ss_conf 4001-7189999970543568886279998748947999997352105----866814598899999966752-884379
Q gi|254780791|r 29 ESNL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEFLVIGKITTFP-GSSKYQ 102 (529)
Q Consensus 29 ~~~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v~~~g~~~~y~-~~g~~q 102 (529)
+... ..|.|.|-|.+.|. .++..+++|.|..+.+.|++....... .--.+.-|+-|.|.|.+.--+ +.|++.
T Consensus 12 ~~~~gk~V~i~Gwv~~~R~--~g~~~Fi~lrD~s~~~Q~v~~~~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~E 89 (108)
T 1x54_A 12 PELDGKKVRLAGWVYTNMR--VGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAE 89 (108)
T ss_dssp GGGTTCEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEE
T ss_pred HHHCCCEEEEEEEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCC
T ss_conf 5879999999998661775--79929999980981489999589799999999964999569999999988988878754
Q ss_pred EEEEEEEECC
Q ss_conf 9999710168
Q gi|254780791|r 103 IIIESLIPSG 112 (529)
Q Consensus 103 l~v~~i~~~g 112 (529)
+.|++++.-+
T Consensus 90 i~v~~i~il~ 99 (108)
T 1x54_A 90 VHVEKLEVIQ 99 (108)
T ss_dssp EEEEEEEEEE
T ss_pred CCCCEEEECC
T ss_conf 4420046424