HHsearch alignment of GI: 254780791 and MMDB domain: 3dm3_A_

>3dm3_A (A:) Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=94.05  E-value=0.47  Score=29.01  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CEEEEEEECCCCC----CCCCC---E-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEE
Q ss_conf             1899999705435----68886---2-79998748947999997352105866814598899999-96675288437999
Q gi|254780791|r   34 HVCVRGEISGYRG----IHSSG---H-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQII  104 (529)
Q Consensus        34 ~~~v~gEis~~~~----~~~sG---H-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~  104 (529)
                      .+-|.|.|-.+..    ..+.|   + +-+.|-|+.+.|.+++|...+.   ..++.|+-|.+.| +++.|  +|.+||.
T Consensus        16 ~v~v~g~V~~~~~~~~~~~~~g~~~~~~~~~i~D~Tg~i~~t~w~~~~~---~~l~~g~~v~i~g~~v~~~--~g~~~l~   90 (105)
T 3dm3_A           16 TATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD---IDVGRGDYVRVRGYIREGY--YGGLECT   90 (105)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG---SCCCTTCEEEEEEEEEECT--TSSEEEE
T ss_pred             EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCC---CCCCCCCEEEEEEEEECCC--CCCEEEE
T ss_conf             5899999998258747992699888999999984998199999635222---5589999999970897368--8968999


Q ss_pred             EEEEEEC
Q ss_conf             9971016
Q gi|254780791|r  105 IESLIPS  111 (529)
Q Consensus       105 v~~i~~~  111 (529)
                      +.....-
T Consensus        91 ~~~~~~i   97 (105)
T 3dm3_A           91 ANYVEIL   97 (105)
T ss_dssp             EEEEEEE
T ss_pred             ECCCEEE
T ss_conf             5995397