HHsearch results for GI: 254780791 and protein with PDBid: 1v1q_A
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=94.96 E-value=0.28 Score=29.57 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=57.6
Q ss_pred CCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 71899999705---43568886--2799987------489------4799999735210586681459889999996675
Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF 95 (529)
Q Consensus 33 ~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y 95 (529)
..|-+.|.|.. ++. ..+| .+-|+|. +.. -.|.|++|...+..+.-.++.|..|.|.|.+...
T Consensus 20 N~v~L~G~l~~dpelR~-Tp~G~~v~~f~La~~s~~~e~~~~r~~~~~i~vv~~G~~Ae~~~~~l~KG~~V~V~G~L~~r 98 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH 98 (134)
T ss_dssp EEEEEEEEEEEEEEEEE-CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCEECCCCEEEEEEEEEEEEECHHHHHHHHHCCCCCEEEEEEEEEEE
T ss_conf 08999999766864679-99998399999987352605896077789999999958999999753789999999995731
Q ss_pred C---CCCEEEEEEEEEEECCC
Q ss_conf 2---88437999997101680
Q gi|254780791|r 96 P---GSSKYQIIIESLIPSGS 113 (529)
Q Consensus 96 ~---~~g~~ql~v~~i~~~g~ 113 (529)
. ..+++-|.|+.|+.-..
T Consensus 99 s~kng~~r~vl~a~~IefLds 119 (134)
T 1v1q_A 99 KAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp CTTTTSCEEEEEEEEEEETTS
T ss_pred ECCCCCCEEEEEEEEEEEECC
T ss_conf 064899889999999998037