HHSEARCH alignment of GI: 254780791 and SCOP domain: d1gm5a2

Alignment

Probab=90.74  E-value=0.14  Score=30.32  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=49.4

Q ss_pred             CEEEEEEECCCCCCC-CCCEE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             189999970543568-88627-99987489479999973521058668145988999999667528843799999710
Q gi|254780791|r   34 HVCVRGEISGYRGIH-SSGHA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLI  109 (529)
Q Consensus        34 ~~~v~gEis~~~~~~-~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~  109 (529)
                      .+.|.|.|...+... .+... .+.+.|+...|.|++|...+....++...|+.|++.|++..-.-++.+|+.--.+.
T Consensus        62 ~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~i~l~fFn~~~~~~~~k~~~G~~v~v~Gkvk~~~~~~~~q~~~p~~~  139 (180)
T d1gm5a2          62 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVT  139 (180)
T ss_dssp             CCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEEEEECSCCTTSSCCEEEEEEE
T ss_pred             EEEEEEEEEEECCCCCCCCCEEEEEEEECCCEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEECCCCEEC
T ss_conf             444423787632332235212578998524407788867389999875413956999987720221660115685465

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RecG "wedge" domain
domain: RecG "wedge" domain
species: Thermotoga maritima [TaxId: 2336]