HHSEARCH alignment of GI: 254780791 and SCOP domain: d1v1qa_

Alignment
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]}
Probab=95.28  E-value=0.14  Score=30.28  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=58.2

Q ss_pred             CCEEEEEEEC---CCCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             7189999970---543568886--2799987------489------4799999735210586681459889999996675
Q gi|254780791|r   33 SHVCVRGEIS---GYRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF   95 (529)
Q Consensus        33 ~~~~v~gEis---~~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y   95 (529)
                      ..|-+.|.|.   .++.. .+|  .+-|+|.      +.+      -.++|++|...+..+.-.++.|++|.|.|++...
T Consensus         7 N~v~L~G~l~~dpelr~T-~~G~~v~~f~la~~~~~~e~~~~r~~~~~i~vv~~g~~Ae~~~~~l~kG~~v~v~G~L~~~   85 (111)
T d1v1qa_           7 NRLVLSGTVCRAPLRKVS-PSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH   85 (111)
T ss_dssp             EEEEEEEEEEEEEEEEEC-TTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCCEEEC-CCCCEEEEEEEEECCEEECCCCEEEEEEEEEEEEECHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf             799999996688646788-9997899999981307731665078889997899689999999872589999999998770


Q ss_pred             --C-CCCEEEEEEEEEEECCCC
Q ss_conf             --2-884379999971016800
Q gi|254780791|r   96 --P-GSSKYQIIIESLIPSGSG  114 (529)
Q Consensus        96 --~-~~g~~ql~v~~i~~~g~G  114 (529)
                        . ..+++.|.++.|+.-+-|
T Consensus        86 ~~~~~~~r~v~~a~~ie~l~s~  107 (111)
T d1v1qa_          86 KAKNGLSKMVLHAEQIELIDSV  107 (111)
T ss_dssp             CTTTTSCEEEEEEEEEEETTSC
T ss_pred             CCCCCCCEEEEEEEEEEEECCC
T ss_conf             2628997799999999995177


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Primosomal replication protein N, PriB
species: Escherichia coli [TaxId: 562]