HHSEARCH alignment of GI: 254780791 and SCOP domain: d2fw2a1

Alignment
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.30  E-value=0.38  Score=26.28  Aligned_cols=78  Identities=19%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCC-----------------HHHHHHHHHHCCCE
Q ss_conf             11036799999999741003576777589995168884----4422007-----------------69999999748904
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFN-----------------DEMIVRAIANSSIP  242 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN-----------------~e~laraI~~~~iP  242 (529)
                      .....+|..+|..+...       ...+|| .+|.|..    -||-.|.                 -..+.+++..||.|
T Consensus        29 ~~~~~el~~al~~~~~d-------~~~~vv-l~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP  100 (258)
T d2fw2a1          29 TEVIKEMVNALNSAAAD-------DSKLVL-FSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKP  100 (258)
T ss_dssp             HHHHHHHHHHHHHHHHS-------SCSEEE-EEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHHHCC-------CCEEEE-EECCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             99999999999998719-------977999-9557421023432111110012211102467777889998763102101


Q ss_pred             EEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             88520-57775-25898864123777214
Q gi|254780791|r  243 IISAI-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       243 VisgI-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      ||++| ||-.- =.-.=+.+|.|..++.+
T Consensus       101 ~Iaav~G~a~GgG~~lal~~D~~ia~~~a  129 (258)
T d2fw2a1         101 IVVSVNGPAIGLGASILPLCDLVWANEKA  129 (258)
T ss_dssp             EEEEECSCEETHHHHTGGGSSEEEEETTC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             34200344545543323344400210133


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]