RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62] (529 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 75.4 bits (185), Expect = 3e-14 Identities = 91/528 (17%), Positives = 165/528 (31%), Gaps = 247/528 (46%) Query: 22 YHLKHIVESNLSHVCVRGEISGYRGIHSSGHAYF-SLKDNHSRIDAIIWKGTLNKIE--F 78 + + + +S A F ++ + ++++ AI + G N + F Sbjct: 127 ITARIMAKRPFDK------------KSNS--ALFRAVGEGNAQLVAI-FGGQGN-TDDYF 170 Query: 79 LPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTL--LTALEKRKKKLLEEGLFSD- 135 EE + T Y +++ LI + TL L +K+ +GL + Sbjct: 171 --EELRDLY-----QT------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NI 215 Query: 136 ----QHKNPIP---FIPKIIAVITSPTGAVIRDILQRISCRFPLRVII-------FPV-- 179 ++ + P ++ ++ P ISC PL I + V Sbjct: 216 LEWLENPSNTPDKDYL------LSIP-----------ISC--PL---IGVIQLAHYVVTA 253 Query: 180 KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG---G-------SIEDLW-HFN 228 K+ G P E+ + + +G T G G + D W F Sbjct: 254 KLLGFT-PGELRSYL-------KGAT------------GHSQGLVTAVAIAETDSWESFF 293 Query: 229 D------EMI----VR---AIANSSIPIISAIGHETDWTLAD-YAADLRAPTP----TGA 270 ++ VR A N+S+P +I L D + P+P + Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLP--PSI-------LEDSLENNEGVPSPMLSISNL 344 Query: 271 AEMAV-----------PVKEHLQSSLINLEARLNNIIIRLIKYKINT--------LNSLL 311 + V P + ++ SL+N A+ N+++ + LN L Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVN-GAK--NLVV--------SGPPQSLYGLNLTL 393 Query: 312 ---KALPNSDQTLSCSRYRLDRLPRELEHNLEIIIF--RKYRHFNHIINR---IKSDFLI 363 KA DQ+ R+P F RK + NR + S F Sbjct: 394 RKAKAPSGLDQS---------RIP-----------FSERKLK----FSNRFLPVASPF-- 427 Query: 364 HNIQKNRQHILEKQQHIEQIVKQHLRY--IFLEKKE-KIAILHM-----LREQTKN---R 412 H+ H+L ++ + L + K+ +I + LR + + R Sbjct: 428 HS------HLLVP---ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478 Query: 413 IFYL------H---------THIKKLITRIEF---------ILSHKIK 436 I THI ++F +L+H+ K Sbjct: 479 IVDCIIRLPVKWETTTQFKATHI------LDFGPGGASGLGVLTHRNK 520 Score = 43.8 bits (103), Expect = 9e-05 Identities = 61/435 (14%), Positives = 110/435 (25%), Gaps = 194/435 (44%) Query: 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267 RP + L+ G S+E + +P S + L PT Sbjct: 7 RP--LTLSHG--SLEHVL--------------LVPTASFFIASQLQ--EQFNKILPEPTE 46 Query: 268 TGA--AEMAVPVKEHLQSSLINLEARLNNI--------IIRLI------KY-KINTLNSL 310 A E P L + + L ++ L Y + N +++L Sbjct: 47 GFAADDEPTTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104 Query: 311 LKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNR 370 L + T + + Y + R K Sbjct: 105 AAKLLQENDTTLVKTKE---------------LIKNYITARIMAKR--------PFDKKS 141 Query: 371 QHILEK---------------QQHIEQIVKQHLRYI------FLEKKEKIAIL-HMLRE- 407 L + Q + + ++ LR + + + I L E Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVG--DLIKFSAETLSEL 198 Query: 408 -QTKNRIFYLHTH-------IKKLITR--IEFILSHKIKSC---------HTSVSITTRI 448 +T + T ++ +++LS I SC H V T ++ Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVV--TAKL 255 Query: 449 L------------------Q---------------SFAYKNTLK----------RGY--- 462 L Q SF + + K R Y Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAY 314 Query: 463 --TSI-----QDTNNN---------------------FITQ-KRNLATKTRI---LINFF 490 TS+ +D+ N ++ + +L ++ L+N Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-- 372 Query: 491 DGQANAIVINKAPPK 505 G N +V PP+ Sbjct: 373 -GAKNLVV--SGPPQ 384 Score = 31.5 bits (71), Expect = 0.48 Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 60/152 (39%) Query: 3 PFSQKNSLDHPEYSVSELS----YHLKH------IVESNL--SHVCVRGE---ISGYRGI 47 PFS++ ++S L +H ++ +L ++V + I Y Sbjct: 408 PFSERK----LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY--- 460 Query: 48 HS-SGHAYFSLKDN--HSRIDAII-----WKGTLNKIEFLPEEGIEFLVIGKITTFPGSS 99 + G L + +D II W+ T I L G PG + Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ----FKATHI--LDFG-----PGGA 509 Query: 100 KYQIIIESLIPSGSGTLLTALEKRKKKLLEEG 131 SG G L R K +G Sbjct: 510 -----------SGLGVLT----HRNK----DG 522 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Length = 390 Score = 34.1 bits (77), Expect = 0.082 Identities = 26/205 (12%), Positives = 61/205 (29%), Gaps = 10/205 (4%) Query: 328 LDRLPRELEHNLEII---IFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIV 384 +D + ++ + + +F ++ K+ ++ ++ + +QI Sbjct: 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKN--IVELMRGDFAKANNNDNTFKQI- 114 Query: 385 KQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSVSI 444 + LR + K+ + + +K+L I+ KI+SC S S Sbjct: 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID----IKIRSCKGSCSR 170 Query: 445 TTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKAPP 504 ++ + N + L I + + +AP Sbjct: 171 ALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPL 230 Query: 505 KEQPTKKCQLHNNKREKQGTQGELF 529 + + + Q E G G Sbjct: 231 EWKALLEMQQTKMVLETFGGDGHAR 255 >2x3v_A Syndapin I, protein kinase C and casein kinase substrate in neurons protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Length = 337 Score = 33.3 bits (75), Expect = 0.13 Identities = 15/173 (8%), Positives = 53/173 (30%), Gaps = 3/173 (1%) Query: 270 AAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLD 329 + E +++ + + + K + K + L ++ Sbjct: 99 KNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYH 158 Query: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLR 389 +E + + K + K L+ + K RQ + + Q+ E++++ + Sbjct: 159 LACKEERLAMTREMNSKTEQSVTPEQQKK---LVDKVDKCRQDVQKTQEKYEKVLEDVGK 215 Query: 390 YIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSV 442 + + ++ + R+ +L + + + + + + Sbjct: 216 TTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYREL 268 >3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B Length = 525 Score = 33.2 bits (75), Expect = 0.16 Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 16/175 (9%) Query: 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQG-----DECPKEIANAILQLNT 199 P+ +AV + T +++D IS L V + P+++ + E A+++ Sbjct: 86 PQAMAVALTCTAELLQDDPNGISRALNLPVPVVPLELPSYSRKENYGADETFRALVRALA 145 Query: 200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 + RT P +L G ++ + + + +A I + Sbjct: 146 VPMERT-PEVTCNLL--GATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRKL 202 Query: 260 ADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKAL 314 A + E +S+ +LE +++ + L + Sbjct: 203 GQ--------AHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGATRDFLAEV 249 >1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 Length = 458 Score = 32.3 bits (73), Expect = 0.29 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 11/103 (10%) Query: 145 PKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKV---QGDECP--KEIANA 193 P IIAV T+ + D L + P ++ G + Sbjct: 97 PDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQG 156 Query: 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 I+ + G + ++I G + ++ + M + I Sbjct: 157 IVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYI 199 >2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Length = 264 Score = 30.3 bits (68), Expect = 1.2 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 12/132 (9%) Query: 151 ITSPTGAVIRDILQRISCRFPLR-VIIFPVKVQGDE--CPKEIANAILQL--NTLKEGRT 205 P G + ++ R+ + +R VI+ DE + I +A +L Sbjct: 2 NARPQGLHL-ELETRLQKMYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSLSAQ-- 58 Query: 206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAP 265 D I ++ +I + + A + ++ +G++ + L Sbjct: 59 ----DHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATL 114 Query: 266 TPTGAAEMAVPV 277 A + Sbjct: 115 LNCPAFLLPSQS 126 >2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Length = 686 Score = 30.0 bits (66), Expect = 1.3 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 7/83 (8%) Query: 43 GYRGIHSSGHAYFSLKDNHSRIDAI-IWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKY 101 G H ID I ++ ++ E + + + Y Sbjct: 178 GAVNREGKEHYLA-----KGSIDEISLFNKAISDQEVSTIPLSNPFQLIFQSGDSTQANY 232 Query: 102 QIIIESLIPSGSGTLLTALEKRK 124 I +L SG +L++++ R Sbjct: 233 -FRIPTLYTLSSGRVLSSIDARY 254 >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Length = 1220 Score = 29.8 bits (66), Expect = 1.6 Identities = 13/104 (12%), Positives = 40/104 (38%), Gaps = 12/104 (11%) Query: 53 AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSG 112 A F+L D ++ +++ + +E I LV+ ++ + +++ +++ Sbjct: 1066 ARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEK---GEELRVLAQAVWT-- 1120 Query: 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTG 156 L + + K L + D + ++ +++ G Sbjct: 1121 ----LEEVLEAPKALE---VEVDHALLDEKGVARLKSLLDEHPG 1157 >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A Length = 170 Score = 29.8 bits (66), Expect = 1.7 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 7/98 (7%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF-LIHNIQKNRQHILE 375 S T+ CS L +P + +++ + N I F + + + + Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTTQVLYL----YDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 Query: 376 KQQHIEQIVKQ--HLRYIFLEKKEKIAILHMLREQTKN 411 + + L + L + +I + K+ Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103 >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Length = 240 Score = 28.7 bits (64), Expect = 3.0 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 11/105 (10%) Query: 148 IAVITSPTGAVIRDILQRISCRFPL---RVIIFPVKVQG-DECPKEIANAILQLNTLKEG 203 I +I P ++ R+ P + + V +G D + + + +L Sbjct: 9 IGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQG-- 66 Query: 204 RTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG 248 ++ L S FN + V + +P + Sbjct: 67 -----AAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMST 106 >3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3lll_A 3hah_A 3hai_A Length = 312 Score = 28.3 bits (62), Expect = 4.1 Identities = 12/174 (6%), Positives = 54/174 (31%), Gaps = 5/174 (2%) Query: 270 AAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLD 329 A + E +++ + + K + K + + ++ Sbjct: 108 KASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHH 167 Query: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIK-SDFLIHNIQKNRQHILEKQQHIEQIVKQHL 388 +E + + K + K D + Q + + ++ ++++ + Sbjct: 168 AACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP 227 Query: 389 RYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSV 442 +Y+ + + ++ + R+ + + ++ ++ K+ + + Sbjct: 228 QYM----ENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDL 277 >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 Score = 28.5 bits (63), Expect = 4.3 Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 17/131 (12%) Query: 316 NSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF----------LIHN 365 + + C LD +P + + E + + + F L +N Sbjct: 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYN 69 Query: 366 IQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLRE--QTKNRIFYL-HTHIKK 422 + + + + L L + N++ L + Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129 Query: 423 LITRIEFILSH 433 L E L+ Sbjct: 130 LTKLKELRLNT 140 >3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A Length = 325 Score = 28.2 bits (62), Expect = 4.8 Identities = 13/173 (7%), Positives = 53/173 (30%), Gaps = 3/173 (1%) Query: 270 AAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLD 329 + E +++ + + + K + K + L ++ Sbjct: 102 KNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYH 161 Query: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLR 389 +E + + + K + + L + K +Q + + Q+ E++++ + Sbjct: 162 LACKEEKLAMTREMNSKT---EQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGK 218 Query: 390 YIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSV 442 + + ++ + R+ +L + + + + + + Sbjct: 219 TTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYREL 271 >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, polymorphism, splicing, glycoprotein, leucine-rich repeat; 1.80A {Homo sapiens} Length = 193 Score = 28.2 bits (61), Expect = 4.9 Identities = 6/36 (16%), Positives = 13/36 (36%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNH 352 D + CS L LP+ + ++ + + Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLV 46 >1xwd_C Follicle stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, cysteine- knot motif, hormone/growth factor complex; HET: NAG BMA; 2.92A {Homo sapiens} SCOP: c.10.2.7 Length = 252 Score = 27.9 bits (60), Expect = 5.2 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF 361 S++ C ++ +P +L N + F + K F Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAF 50 >2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Length = 559 Score = 27.5 bits (60), Expect = 7.4 Identities = 13/140 (9%), Positives = 41/140 (29%), Gaps = 8/140 (5%) Query: 289 EARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYR 348 E++ +I + L + + L + +L+ +I Sbjct: 397 ESQAARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALP--IEAVILSLQDLIGYFEP 454 Query: 349 HFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVK-QHLRYIFLEKKEKIAILHMLRE 407 + + K L +NRQ + +++ + ++ ++ E Sbjct: 455 PSEELQHEEKQSKLRSL--RNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEY---AGE 509 Query: 408 QTKNRIFYLHTHIKKLITRI 427 + + + +L+ + Sbjct: 510 EAAESWKEIVNLLYELLASL 529 >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Length = 315 Score = 27.7 bits (61), Expect = 7.5 Identities = 18/185 (9%), Positives = 56/185 (30%), Gaps = 27/185 (14%) Query: 226 HFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSL 285 ++ + + +++P+I+ + D P A + + E + Sbjct: 109 VYDHKDVEDLAKYATVPVINGLS------------DFSHPCQALA--DYMTIWEKKGT-- 152 Query: 286 INLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFR 345 + + + + N +SL+ A + + ++ E Sbjct: 153 ------IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAE 206 Query: 346 KYRHFNHIINRIK----SDFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEK-KEKIA 400 F + + +K +D + ++ + E ++ + + ++ K Sbjct: 207 SGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYM 266 Query: 401 ILHML 405 +H L Sbjct: 267 FMHCL 271 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409 Score = 27.4 bits (60), Expect = 8.5 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 1/124 (0%) Query: 360 DFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTH 419 DF +LE + ++Q I + I ++ I L Sbjct: 27 DFFNKYRLTTDGELLEIEGLLQQATNS-TGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQK 85 Query: 420 IKKLITRIEFILSHKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNL 479 KK+I I + + +T +T + + LK+ ++ + Sbjct: 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPCKDTAEI 145 Query: 480 ATKT 483 T Sbjct: 146 QETT 149 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0541 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,615,412 Number of extensions: 226354 Number of successful extensions: 770 Number of sequences better than 10.0: 1 Number of HSP's gapped: 766 Number of HSP's successfully gapped: 58 Length of query: 529 Length of database: 5,693,230 Length adjustment: 97 Effective length of query: 432 Effective length of database: 3,341,562 Effective search space: 1443554784 Effective search space used: 1443554784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.9 bits)