HHsearch alignment for GI: 254780793 and conserved domain: COG0534
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
Probab=100.00 E-value=3.3e-43 Score=244.60 Aligned_cols=420 Identities=15% Similarity=0.143 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
T Consensus 18 ~l~~la~P~i~~~l~~~l~~~vD~~~vG~~-~-~~alaav~la~~i~~~~~~~~~--gl~~g~~~liaq~~Ga~~~~~~~ 93 (455)
T COG0534 18 LLLKLAIPIILGNLLQTLYGLVDTFMVGHL-G-AEALAAVGLANPIFFLIIAIFI--GLGTGTTVLVAQAIGAGDRKKAK 93 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999999999999999999999965-0-8999999999999999999999--99999999999997499889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~-----~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 168 (455)
T COG0534 94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAP-----AEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTP 168 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999999999999699999985997-----6799999999999999999999999999999858991487
Q ss_pred HHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCC---CC-CCCCCCCCCCCCHHHHHH
Q ss_conf 99998540103467777623568654432000122111011100023101210365---44-456775432410001346
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGV---KL-RFQYPRLTHNVKFFLKLT 237 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~k~~l~~~ 237 (518)
T Consensus 169 m~~~~~~~~lNi~Ln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG 247 (455)
T COG0534 169 MYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLG 247 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH-HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 9999999999999979999951312-122209999999999999999999996343003554201479999999999966
Q ss_pred HHHHHHHHHCCCHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8887643201202333-202556556630577775332110000001112322100234444332236789998975411
Q gi|254780793|r 238 FPLMVTGGIIQISNIV-GRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 238 ~p~~l~~~~~~i~~~i-~~~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
T Consensus 248 ~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~ 326 (455)
T COG0534 248 LPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKL 326 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 4699999999999999999999759899999999999999999-999999999999999987799999999999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 344215899999852572311121047864455456666555420105677531232023544331013467778886-8
Q gi|254780793|r 317 ISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI-A 395 (518)
Q Consensus 317 ~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~-~ 395 (518)
T Consensus 327 ~~~~~~~~~~i~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~~~~~~~~~~~~~~g~lrg~g~~~~~~~~~~~~~~~ 402 (455)
T COG0534 327 SLLIALLIALLLLLFREPIISLFTT----DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWG 402 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999989999999789----499999999999999999999999999999975258719989999999999
Q ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998752021-12004999999999999999999999711
Q gi|254780793|r 396 INLTIAIGSFPF-IGGYGIALAEVSSSWVNTICLAITLLKRK 436 (518)
Q Consensus 396 vni~l~~~li~~-~G~~G~a~at~i~~~~~~~~~~~~l~k~~ 436 (518)
T Consensus 403 ~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 403 FRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999888417427669999999999999999999998