HHsearch alignment for GI: 254780793 and conserved domain: PRK00187
>PRK00187 multidrug efflux protein NorA; Provisional.
Probab=100.00 E-value=3.5e-40 Score=228.63 Aligned_cols=422 Identities=11% Similarity=0.015 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
T Consensus 11 ~ll~La~Pi~~~~l~~~l~~~vD~~~vG~-lg~~alA-av~~~~~~~~~~~~~~-~g-~~~g~~~lvaq~~Ga~~~~~~~ 86 (462)
T PRK00187 11 ALLRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALA-GGGLGAASYSFVSIFC-VG-VIAAVGTLVAIRHGAGDIEGAT 86 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999875-5899999-9999999999999999-99-9999999999997799989899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
T Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~-~~~~il~~~g-----~~~~~~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 160 (462)
T PRK00187 87 RLAQSGLWLAWLLALVAALLLW-NLEPLLLLFG-----QAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9999999999999999999999-9999999869-----899999999999999999999999999999999867997169
Q ss_pred HHHHHHHHCHHHHHHHHHHCC-CCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHC-CCCC-CCCC---CCCCCCCCCHHHH
Q ss_conf 999985401034677776235-68654432000122111011100023101210-3654-4456---7754324100013
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWH-PSSPQETTYLLAWGVFLSNVVHFWIVYCCAKN-DGVK-LRFQ---YPRLTHNVKFFLK 235 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~-~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~k~~l~ 235 (518)
T Consensus 161 ~~~~~~~~v~Ni~Ln~~lI~g~~g~p~lGv~Gaa~at~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 240 (462)
T PRK00187 161 MVISLAGAVANLALNYALIEGWFGLPKLGLMGIGLVTALVSNCMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWR 240 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999988861445655321689889999999999999999999905523011033124577999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 468887643201202333202-5565566305777753321100000011123221002344443322367899989754
Q gi|254780793|r 236 LTFPLMVTGGIIQISNIVGRA-IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAI 314 (518)
Q Consensus 236 ~~~p~~l~~~~~~i~~~i~~~-~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~ 314 (518)
T Consensus 241 ig~P~~~~~~~~~~~~~~~~~~~~~lG~~alAA~~i~~~i~~l~~-~~~~gi~~A~~~~vG~~lGa~~~~~a~~~~~~~~ 319 (462)
T PRK00187 241 LGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQAVSVAF-MVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGI 319 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 986799999999999999999998568099999999999999999-9999999999999999876899999999999999
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCHHHHCCC-CCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 113442158999998525723111210478-6445545666655542010567753123202354433101346777888
Q gi|254780793|r 315 ECISFFGIPSAVALFMLSKEIVQTLYERGA-FSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVS 393 (518)
Q Consensus 315 ~~~~~i~~p~~~~l~~~~~~ii~llf~~g~-F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~ 393 (518)
T Consensus 320 ~~~~~~~~~~~~~~~~f~~~i~~lFt~~~d~~~~evi~l~~~~l~i~~~~~~~~~~~~v~~g~lrg~G~~~~~~~~~~i~ 399 (462)
T PRK00187 320 GFGAVAMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLAC 399 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999999999999862889852399999999999999999999999999999999827439999999999
Q ss_pred H-HHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6-8999998752021--120049999999999999999999997
Q gi|254780793|r 394 I-AINLTIAIGSFPF--IGGYGIALAEVSSSWVNTICLAITLLK 434 (518)
Q Consensus 394 ~-~vni~l~~~li~~--~G~~G~a~at~i~~~~~~~~~~~~l~k 434 (518)
T Consensus 400 ~w~v~vPla~~l~~~~~~G~~GiW~g~~i~~~~~~i~~~~~~~w 443 (462)
T PRK00187 400 YWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (462)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999857992336898999999999999999999