HHsearch alignment for GI: 254780793 and conserved domain: PRK09575
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed.
Probab=99.97 E-value=1.7e-28 Score=166.89 Aligned_cols=238 Identities=14% Similarity=0.125 Sum_probs=196.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7543241000134688876432012023332025565--56630577775332110000001112322100234444332
Q gi|254780793|r 224 PRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASR--ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSK 301 (518)
Q Consensus 224 ~~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~--~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~ 301 (518)
T Consensus 8 ~~~~~I~k~~~~laiP~i~~~l~~~ly~ivD~~fvG~~~G~~alAAv~~~~pi~~~~~~~-~~~lg~G~~~lis~~~G~~ 86 (456)
T PRK09575 8 QMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGI-GLMVGMGTGSLLSIYRGEG 86 (456)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC
T ss_conf 048988999999999999999999999999999944726898999999999999999999-9999999999999997699
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHH
Q ss_conf 23678999897541134421589999985257231112104786445545666655542010567753123202354433
Q gi|254780793|r 302 NKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQN 381 (518)
Q Consensus 302 d~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g 381 (518)
T Consensus 87 ~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~-lg--a-~~~v~~~a~~Yl~i~~~g~~~~~~~~~~~~~lra~G 162 (456)
T PRK09575 87 DLQKAKTILTTGLLLLLLLGPIVSIILWLFADDFLLA-QG--A-EGRTLELGLQYIQVLTWGCLFTIGAIALPMLVRNDE 162 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999999999988-39--7-899999999999999998899999999999998289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHH
Q ss_conf 101346777888689999987520--2112004999999999999999999999711--------578898899999999
Q gi|254780793|r 382 DMKAPMKFTIVSIAINLTIAIGSF--PFIGGYGIALAEVSSSWVNTICLAITLLKRK--------QINLPFKTIYRILSV 451 (518)
Q Consensus 382 ~~~~~~~~~~~~~~vni~l~~~li--~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~--------~~~~~~~~~~~~~~~ 451 (518)
T Consensus 163 ~~~~~~~~~i~~~i~NiiLd~lfI~~~~lGv~GAAlATvisq~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~i~~i 242 (456)
T PRK09575 163 SPNLATGLMVLGALINIVLDYLFIGVLDWGLTGAAIATALAQLVVTILGLGYFFSSRANIKLSLKELLFNWSLAPQIVLL 242 (456)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHH
T ss_conf 98305899999778899899999720899864499999999999999999999906861475376311569999999998
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780793|r 452 SISAGLMGFFIILFR 466 (518)
Q Consensus 452 ~~~~~im~~~~~~~~ 466 (518)
T Consensus 243 G~p~~i~~~~~s~~~ 257 (456)
T PRK09575 243 GSSSFFMYLYGSFVV 257 (456)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 479999999999999