Query gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 518
No_of_seqs 208 out of 3436
Neff 9.1
Searched_HMMs 39220
Date Tue May 31 14:36:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780793.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01695 mviN integral membra 100.0 0 0 596.8 39.2 511 2-513 1-538 (538)
2 COG0728 MviN Uncharacterized m 100.0 0 0 592.6 37.8 501 1-507 7-511 (518)
3 pfam03023 MVIN MviN-like prote 100.0 0 0 556.1 31.2 440 28-473 1-441 (452)
4 TIGR02900 spore_V_B stage V sp 100.0 0 0 366.0 31.7 468 3-498 1-492 (493)
5 PRK10459 colanic acid exporter 100.0 0 0 307.5 31.8 475 2-518 6-482 (492)
6 PRK09575 vmrA multidrug efflux 100.0 0 0 264.5 27.4 417 3-434 17-438 (456)
7 COG2244 RfbX Membrane protein 100.0 1.3E-44 0 252.1 34.3 400 1-434 6-409 (480)
8 PRK01766 multidrug efflux prot 100.0 2.8E-44 0 250.2 28.8 422 2-437 10-441 (452)
9 COG0534 NorM Na+-driven multid 100.0 3.3E-43 0 244.6 27.6 420 2-436 18-444 (455)
10 PRK10189 hypothetical protein; 100.0 3.6E-43 0 244.4 27.3 422 2-435 33-465 (481)
11 PRK00187 multidrug efflux prot 100.0 3.5E-40 8.4E-45 228.6 28.0 422 2-434 11-443 (462)
12 PRK10367 DNA-damage-inducible 100.0 1.1E-39 2.8E-44 226.0 26.7 419 2-437 10-433 (439)
13 TIGR00797 matE MATE efflux fam 100.0 1.5E-35 3.9E-40 204.1 23.4 391 10-414 2-412 (412)
14 PRK10189 hypothetical protein; 100.0 4.4E-29 1.1E-33 170.0 19.9 233 228-463 29-279 (481)
15 PRK01766 multidrug efflux prot 100.0 3.2E-29 8.1E-34 170.8 18.5 232 225-461 3-251 (452)
16 COG0534 NorM Na+-driven multid 100.0 4.3E-29 1.1E-33 170.1 17.1 237 226-467 12-262 (455)
17 PRK09575 vmrA multidrug efflux 100.0 1.7E-28 4.4E-33 166.9 18.6 238 224-466 8-257 (456)
18 TIGR00797 matE MATE efflux fam 100.0 2.6E-27 6.7E-32 160.6 18.9 234 239-477 1-253 (412)
19 PRK00187 multidrug efflux prot 100.0 2.6E-26 6.7E-31 155.4 20.1 233 226-464 5-254 (462)
20 PRK10367 DNA-damage-inducible 99.9 4.2E-26 1.1E-30 154.3 18.7 229 228-461 6-247 (439)
21 pfam01943 Polysacc_synt Polysa 99.9 6E-22 1.5E-26 132.4 16.4 269 3-297 1-271 (272)
22 pfam03023 MVIN MviN-like prote 99.8 7.6E-17 1.9E-21 105.5 18.7 204 4-216 201-404 (452)
23 pfam01554 MatE MatE. The MatE 99.8 1.3E-19 3.4E-24 120.0 4.6 160 239-403 1-161 (161)
24 pfam04506 Rft-1 Rft protein. 99.7 2.9E-13 7.4E-18 86.5 24.0 269 231-517 238-528 (533)
25 KOG2864 consensus 99.7 1.3E-12 3.2E-17 83.2 26.7 417 1-437 8-451 (530)
26 PRK10459 colanic acid exporter 99.6 4.8E-13 1.2E-17 85.4 19.0 195 4-214 210-404 (492)
27 pfam01554 MatE MatE. The MatE 99.6 2.8E-13 7.3E-18 86.6 17.1 156 10-174 2-157 (161)
28 COG0728 MviN Uncharacterized m 99.6 1.3E-12 3.4E-17 83.0 19.0 202 7-217 238-439 (518)
29 TIGR02900 spore_V_B stage V sp 99.6 1.2E-12 3E-17 83.3 17.9 225 234-466 2-246 (493)
30 TIGR01695 mviN integral membra 99.5 1.9E-12 4.7E-17 82.3 16.1 206 2-216 245-457 (538)
31 KOG1347 consensus 99.5 5.8E-14 1.5E-18 90.2 5.5 409 3-432 30-449 (473)
32 KOG1347 consensus 99.5 3E-13 7.7E-18 86.4 8.8 229 227-461 24-262 (473)
33 COG2244 RfbX Membrane protein 99.4 1.6E-10 4.2E-15 72.0 16.6 42 222-263 208-250 (480)
34 pfam01943 Polysacc_synt Polysa 98.1 0.00034 8.6E-09 38.7 18.3 211 235-461 3-219 (272)
35 COG4267 Predicted membrane pro 97.3 0.0064 1.6E-07 31.9 24.0 348 37-424 58-435 (467)
36 pfam04506 Rft-1 Rft protein. 97.2 0.0093 2.4E-07 31.1 12.2 38 1-38 1-38 (533)
37 KOG2864 consensus 96.7 0.015 3.7E-07 30.1 8.2 20 59-78 97-116 (530)
38 TIGR01478 STEVOR variant surfa 90.3 0.81 2.1E-05 20.9 6.8 125 304-439 178-304 (315)
39 PRK11017 codB cytosine permeas 89.8 0.9 2.3E-05 20.6 12.0 89 405-511 300-389 (394)
40 pfam07260 ANKH Progressive ank 88.8 0.79 2E-05 20.9 4.5 163 131-298 131-307 (345)
41 PRK11281 potassium efflux prot 71.6 4.9 0.00013 16.7 16.9 20 411-430 873-892 (1107)
42 PTZ00042 stevor; Provisional 63.0 7.5 0.00019 15.8 3.7 34 407-440 261-294 (304)
43 TIGR01129 secD protein-export 53.5 11 0.00028 14.9 6.7 52 344-396 330-382 (522)
44 pfam04138 GtrA GtrA-like prote 48.7 13 0.00034 14.4 12.6 68 388-457 4-72 (116)
45 cd01118 ArsB_permease Anion pe 32.7 25 0.00063 13.0 10.1 51 403-462 360-410 (416)
46 TIGR02121 Na_Pro_sym sodium/pr 26.6 32 0.00081 12.4 1.5 200 231-468 238-460 (517)
47 TIGR02493 PFLA pyruvate format 25.8 32 0.0008 12.5 1.1 26 100-125 158-183 (243)
No 1
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=596.83 Aligned_cols=511 Identities=31% Similarity=0.524 Sum_probs=460.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 1368899999999999999999999999995777578999999997899999997--57789999999999984489789
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAA--EGIFHNSFIPLFSQEKENNGSES 79 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~--~G~~~~a~ip~~~~~~~~~~~~~ 79 (518)
|++|++.+++.+|+.||++||+||..+|+.||||..+|||++|+.+||.++.+++ ||+++++++|.+.|+++++++|+
T Consensus 1 sl~k~~~~v~~~TL~SRi~GfvR~~i~a~~fGag~~~DAF~vA~~~Pn~~RrlfaGiEGA~~~aFvP~f~~~~~~~g~~~ 80 (538)
T TIGR01695 1 SLLKSTLIVSLGTLFSRILGFVRDAIIASAFGAGLVADAFNVAFKIPNLLRRLFAGIEGAFSSAFVPVFKKAKKKEGEKE 80 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 92899999999999999999999999998836770799999999988999999852302477889999999996155578
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999-99999999999999999999996534344457887-541011-112456554443321246888765688998842
Q gi|254780793|r 80 AQR-LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPG-FADQSD-KYFLTIQLSRVMFPSIIFISLASLVTGMLFALG 156 (518)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g-~~~~~~-~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~ 156 (518)
+++ +.+.+...........+++..+++ +++..+.+|| +.+|++ ++.+|++++|+++|+++++++.++..|+||+++
T Consensus 81 ~~~~f~~~~~~l~~~~~~l~~~~~~~~a-~~~~~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl~l~sL~~~~~~~Ln~~~ 159 (538)
T TIGR01695 81 ARRAFAEKVLTLLILVLLLVVLLGIFFA-PIVISLLAPGLFADDAANKFSLAVSLLRITFPYLLLISLAAVFGAILNARE 159 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999999999999978-889973176435740245899999999999999999999999999997755
Q ss_pred CHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHH-------HHHHHHHHHHHCCCCCHHHCCC---CCCCCCCCCC
Q ss_conf 22799999985401034677776235686544320001-------2211101110002310121036---5444567754
Q gi|254780793|r 157 RYFIASIAPIVINVFPIFALTYALWHPSSPQETTYLLA-------WGVFLSNVVHFWIVYCCAKNDG---VKLRFQYPRL 226 (518)
Q Consensus 157 ~f~~~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a-------~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~ 226 (518)
||..|+++|++.|+..|+.+.+.............-.+ +|+++|+++|++.+++..+|.+ .+++|++++.
T Consensus 160 ~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l~~~G~R~~~~~prf~~~ 239 (538)
T TIGR01695 160 RFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPALRKAGIRGLLLKPRFNFR 239 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 55256799999999999999999863012466667899999999999999999999999999710673035531010335
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHC---CCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32410001346888764320120233320---2556-5566305777753321100000011123221002344443322
Q gi|254780793|r 227 THNVKFFLKLTFPLMVTGGIIQISNIVGR---AIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKN 302 (518)
Q Consensus 227 ~~~~k~~l~~~~p~~l~~~~~~i~~~i~~---~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d 302 (518)
++.+|+.++...|.+++.++.|++.++|+ .+|| .+.|++|+++||++++++|.|+|+.|++++.+|++||+..+||
T Consensus 240 ~~~l~~~l~~~~p~~lg~s~~q~~~l~~t~L~~~AS~l~~Gs~s~~~yA~r~~~LP~gif~vsl~~v~lP~~s~~~~~~~ 319 (538)
T TIGR01695 240 DPGLKRFLKLMLPTTLGVSASQITLLINTRLLALASFLEIGSVSALYYASRLYQLPLGIFGVSLATVLLPKLSKHASEGN 319 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 45899999999999999999999999999999873155268999999999999989999999999999999998850268
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 36789998975411344215899999852572311121047864455456666555420105677531232023544331
Q gi|254780793|r 303 KQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQND 382 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~ 382 (518)
++++++..++++|.++++.+|.++++.++++||++++|+||+||+||+.+++.+|.+|++|++++++..++.+.|||.+|
T Consensus 320 ~~~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g~F~~~~~~~ta~~L~~y~lGl~~~~l~~vL~~~fYA~~d 399 (538)
T TIGR01695 320 WNELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERGAFSEEDALMTATILAAYALGLIFYSLQKVLLRAFYARKD 399 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999999998899999885378888889999999999999989999999999877875530
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---H
Q ss_conf 0134677788868999998----75202112004999999999999999999999711578898899999999999---9
Q gi|254780793|r 383 MKAPMKFTIVSIAINLTIA----IGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSIS---A 455 (518)
Q Consensus 383 ~~~~~~~~~~~~~vni~l~----~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~---~ 455 (518)
+|+|++++.++.++|+.++ ..+++.+|..|++.|++++.+++..++++.++||.+...+.+...+..|...+ +
T Consensus 400 ~~tP~~~~~~~~~~n~~l~GlCy~~l~~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~v~as~~~ 479 (538)
T TIGR01695 400 TKTPFIVSVISVVLNVLLSGLCYLLLIFPLGLSGIALATSLAAIVSAVLLYLRLKKRLKGILDIGVLKKLLKLVIASILA 479 (538)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 20489999999999999988999988888736899999999999999999999865204776135789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999999986553100-02799999999999999999999999960078999999
Q gi|254780793|r 456 GLMGFFIILFRPYFNQFSSA-TTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQ 513 (518)
Q Consensus 456 ~im~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~vY~~~l~l~~~~~~~~~l~ 513 (518)
.+|+.+++.......+..+. .....+...+.....++..+|+....+.+.+|....+|
T Consensus 480 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~~~~~~~~~~r 538 (538)
T TIGR01695 480 AIIGVVLYLLVSVLAWSLGGKKFLVKNLLGLLALGLIGLLVYFLALALLKIEELELLLR 538 (538)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998865203344312456689999999999999999999962999987409
No 2
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=0 Score=592.65 Aligned_cols=501 Identities=31% Similarity=0.558 Sum_probs=453.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 91368899999999999999999999999995777578999999997899999997577899999999999844897899
Q gi|254780793|r 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESA 80 (518)
Q Consensus 1 m~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~ 80 (518)
||++|++..++.+|++||++|++||+.+|+.||++..+|||++|+.+||+++.+++||+++++++|++.|+++++++|++
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 88999999999999999999999999999996776688999999972899999984636766666789999870605579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999965343444578875410111124565544433212468887656889988422279
Q gi|254780793|r 81 QRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFI 160 (518)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~ 160 (518)
+++.+.+...+......+++++.+++|++++.+.+||+ +++++. +++.++||++|++++.++.+++.++||+.++|..
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~-~~~~~~-~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~ 164 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF-DETDKF-LAVLLTRILFPYLLFISLSALFGAILNSRNRFFI 164 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECH
T ss_conf 99999999999999999999999988999999717897-515689-9999999999999999999999999840372120
Q ss_pred HHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999854010346777762356865443200012211101110002310121036544456775432410001346888
Q gi|254780793|r 161 ASIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPL 240 (518)
Q Consensus 161 ~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~ 240 (518)
|+++|++.|++.|....+ .........++++||+++|++.|++++++..+|.+...+++++++++.+|++++...|.
T Consensus 165 ~a~aPvl~Nv~~I~~~l~---~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~ 241 (518)
T COG0728 165 PAFAPVLLNVSVIGLALF---LGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPA 241 (518)
T ss_pred HHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 446499999999999998---54100047899999999999999999999999836544787888715599999999999
Q ss_pred HHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7643201202333202556-556630577775332110000001112322100234444332236789998975411344
Q gi|254780793|r 241 MVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISF 319 (518)
Q Consensus 241 ~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~ 319 (518)
+++.++.|++.++|+.++| ..+|++++++||+|++|+|.|+++.+++|+++|++||+.+++|+++.++..++++|.+++
T Consensus 242 ~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 242 LLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999986013509999999999971589999999999879999975067659899999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21589999985257231112104786445545666655542010567753123202354433101346777888689999
Q gi|254780793|r 320 FGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLT 399 (518)
Q Consensus 320 i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~ 399 (518)
+++|+++++.++++|+++++|+||+|+++|+.+++.++.+|++|++++.+..++.+.|||++|+|+|+++++++.++|+.
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~ 401 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999899999999535899857799999999999874489999999999999803877376999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98752021120049999999999999999999997115788--9889999999999999999999999998655310002
Q gi|254780793|r 400 IAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINL--PFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATT 477 (518)
Q Consensus 400 l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~--~~~~~~~~~~~~~~~~im~~~~~~~~~~~~~~~~~~~ 477 (518)
+|..+.+.+|..|+|++++++.++++.++++.++|+..... .|..+. ..|..+++.+|+...+...+..........
T Consensus 402 l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~-~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~ 480 (518)
T COG0728 402 LNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL-ILKLLLASAIMAAALLALLHLAQREWLLGG 480 (518)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999786135229999999999999999999999843778620035999-999999999999999999999999999868
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 799-999999999999999999999960078
Q gi|254780793|r 478 FFD-PFKNLVIMLSGAMLVYLFSIFLFLGKD 507 (518)
Q Consensus 478 ~~~-~~~~l~~~i~~~~~vY~~~l~l~~~~~ 507 (518)
... ....+......+..+|.....+.+.+.
T Consensus 481 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~ 511 (518)
T COG0728 481 LLLIRLGVLLLLVLLGAGVYFAMLLLLGFRV 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999988775
No 3
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=100.00 E-value=0 Score=556.07 Aligned_cols=440 Identities=32% Similarity=0.543 Sum_probs=414.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99995777578999999997899999997577899999999999844897899999999999999999999999999653
Q gi|254780793|r 28 VAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILP 107 (518)
Q Consensus 28 ~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 107 (518)
+|+.||++..+|||++|+++||+++.++++|+++++++|.++|+++ +|+|+++++.++++++......++++++.+++|
T Consensus 1 iA~~fGa~~~~DAf~~A~~iPn~l~~l~~~Gals~afIP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~fap 79 (452)
T pfam03023 1 IAAYFGAGPLADAFNVAFRIPNLLRRLFAEGAFSSAFVPVFAELKQ-ADKDEAAEFVRRVSTLLIGVLLLVTLLGILAAP 79 (452)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9499787848699999999899999999999999999999999985-396999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC
Q ss_conf 43444578875410111124565544433212468887656889988422279999998540103467777623568654
Q gi|254780793|r 108 LLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYALWHPSSPQ 187 (518)
Q Consensus 108 ~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~vi~ni~~i~~~~~~~~~~~~~~ 187 (518)
+++. +.+||+. +|+.+++++++|+++|+++|.++++++++++|+++||..|+.+|++.|++.|.+..+.... ...
T Consensus 80 ~lv~-l~a~Gf~--~~~~~la~~l~ri~~p~i~f~~l~a~~~~~Lna~~~F~~~a~~pi~~N~~~I~~ll~~~~~--~g~ 154 (452)
T pfam03023 80 WVIR-LLAPGFD--AETFSLTVSLLRITFPYLLLVSLSAVFGAVLNARKKFFAPAFSPVLLNIGVILTLLFLANY--FGR 154 (452)
T ss_pred HHHH-HHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCH
T ss_conf 9999-9858875--4689999999999999999999999999999883885557875898999999999999985--561
Q ss_pred CCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHH
Q ss_conf 432000122111011100023101210365444567754324100013468887643201202333202556-5566305
Q gi|254780793|r 188 ETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIIS 266 (518)
Q Consensus 188 ~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs 266 (518)
..++++++|+++|.++|.+++++..+|.+.+++++++++++.+|++++...|.+++.++.|++.++|+.++| .++|+++
T Consensus 155 ~~i~~la~g~~~G~~~q~l~~~~~l~k~g~~~~~~~~~~~~~lk~~~~l~~P~~l~~~~~qin~lvd~~~AS~l~~G~vs 234 (452)
T pfam03023 155 EPIYGLAIGVLIGGVLQLLVQLPFLRKAGLLLKPRFNFRDKGVKRFLALALPTLLGVSVSQLNLLIDTALASFLAEGSIS 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 89999999999999999999999999829964554354543688999999999999999999999999998735432799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf 77775332110000001112322100234444332236789998975411344215899999852572311121047864
Q gi|254780793|r 267 AIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFS 346 (518)
Q Consensus 267 ~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~ 346 (518)
+++||+|++++|+++++.+++++++|.+||+.++||++++++.++++++...++++|++++++++++|+++++|+||+||
T Consensus 235 ~l~yA~rl~~lP~gi~~vai~tv~~P~lS~~~~~~d~~~~~~~l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG~F~ 314 (452)
T pfam03023 235 YLYYADRIYQLPLGIFGVSVSTVLLPRLSRHAKDGDWDEFLDLLDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERGAFS 314 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999888787899999855998889999998768999999999999999999999999999997899999998048999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 45545666655542010567753123202354433101346777888689999987520211200499999999999999
Q gi|254780793|r 347 SQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTI 426 (518)
Q Consensus 347 ~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~l~~~li~~~G~~G~a~at~i~~~~~~~ 426 (518)
++|+..++.++.+|+++++++++.+++.+.|||.||+|+|+++++++.++|+++|+.+++++|..|+|+||+++.++++.
T Consensus 315 ~~~~~~ta~~L~~y~~gl~~~~l~~il~r~fyA~~dtktP~~~s~i~~~~ni~l~~~l~~~~g~~GlAlatsis~~v~~~ 394 (452)
T pfam03023 315 PEDVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTKTPFKISLISAVLNILLSLLLLPPLGVVGLALATSLSAWINLV 394 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998899999999998858657858899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997115788988999999999999999999999999865531
Q gi|254780793|r 427 CLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFS 473 (518)
Q Consensus 427 ~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~im~~~~~~~~~~~~~~~ 473 (518)
++++.++||......++......|...++.+|+.++++.+.+.....
T Consensus 395 ll~~~l~k~~~~~~~~~~~~~~~k~~~as~~m~~~~~~~~~~~~~~~ 441 (452)
T pfam03023 395 FLYYILRKRLGGHSLRGWKTFLASLVVPTALMGGVILLLSSLTQGLW 441 (452)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998658776059999999999999999999999999860254
No 4
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=100.00 E-value=0 Score=366.02 Aligned_cols=468 Identities=16% Similarity=0.278 Sum_probs=389.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 36889999999999999999999999999577757899999999789999999757789999999999984489789999
Q gi|254780793|r 3 IIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQR 82 (518)
Q Consensus 3 ~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~ 82 (518)
..|||++++++++++|++||+.++++||.+|+++ .+.|+.+..+++++..+...| +++|+.+..+|+.++||+++.+|
T Consensus 1 Flkg~fiL~~a~~iTr~LGFifri~ls~~LGaEG-vGLY~l~~P~y~L~itL~~~G-l~~AISk~~Ae~~a~~D~~n~~k 78 (493)
T TIGR02900 1 FLKGTFILTIANLITRILGFIFRIVLSRILGAEG-VGLYGLAMPIYFLFITLTTGG-LPVAISKFVAEASAKNDKKNIKK 78 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9048999999988846778988998865423663-117888999999999998653-99999999999871377446689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999996534344457887541011112456554443321246888765688998842227999
Q gi|254780793|r 83 LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIAS 162 (518)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a 162 (518)
...-...+..+++.+++.+.++.+|.+.+.+.. |+ .+..-+.+.+|.+|+.+++++++||+||..|+++||
T Consensus 79 il~~S~~f~~~~s~~v~~~~f~~~p~Ia~~ll~-----D~----R~~~~l~~i~P~~~~iA~SsvLkGYFqG~~~~~~~A 149 (493)
T TIGR02900 79 ILKVSLIFTLIWSLIVTAIVFLLAPFIASTLLK-----DE----RSLYSLLVICPAVPIIALSSVLKGYFQGISNMKPPA 149 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999999999999999999999998999985167-----60----789999998328999999888888755355054678
Q ss_pred HHHHHHHCHHHHHHHHH--HCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC-CCCCCCCCCCCC-----CCCHHH
Q ss_conf 99985401034677776--2356865443200012211101110002310121036-544456775432-----410001
Q gi|254780793|r 163 IAPIVINVFPIFALTYA--LWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG-VKLRFQYPRLTH-----NVKFFL 234 (518)
Q Consensus 163 ~~~vi~ni~~i~~~~~~--~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~k~~l 234 (518)
++|++|++++|...... .+...+.+..+.++..+..+|+++++++++...+|++ .+.|.++...++ ..++++
T Consensus 150 ~~qv~Eq~vRI~~~~~li~~F~~~~~e~ava~A~~~~~lGE~~SLl~l~~~f~~~~~~~~r~~~~~~~~egk~q~l~~l~ 229 (493)
T TIGR02900 150 YIQVIEQIVRISVVALLISLFLPYGVEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSISIRKPFFDYKSEGKAQLLFDLL 229 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999999999998841368899999999999999999999999988860025315634555332899999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCC--C---C---CCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3468887643201202333202556--5---5---663057----77753321100000011123221002344443322
Q gi|254780793|r 235 KLTFPLMVTGGIIQISNIVGRAIAS--R---E---TGIISA----IQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKN 302 (518)
Q Consensus 235 ~~~~p~~l~~~~~~i~~~i~~~~as--~---~---~g~vs~----~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d 302 (518)
..++|.+++..+..+...+|+.+.- + | ..|.+- -++|..+..+|. +++.|++|++.|.+||..++||
T Consensus 230 ~~S~P~t~srf~~s~l~~~~~llvp~rL~~AGv~~~~A~~~yG~lsGmA~~l~~~P~-vIt~SlST~LvP~iSEa~~kk~ 308 (493)
T TIGR02900 230 SVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTLPA-VITSSLSTALVPDISEAMAKKN 308 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 998648888999999999868899999998779999999985588607999987689-9999999987788998755354
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHH
Q ss_conf 36789998975411344215899999852572311121-04786445545666655542010567753123202354433
Q gi|254780793|r 303 KQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLY-ERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQN 381 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf-~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g 381 (518)
++-++++++|++|++++.+.|.++.+.++++|+-+++| ++ +..+..+++.+++.||...+....+++||+|
T Consensus 309 y~~~~~Ri~qa~risll~G~~~~~I~l~~p~~l~~L~yP~~--------~~~g~fi~~~a~~~pf~Y~~~~~~siL~gLg 380 (493)
T TIGR02900 309 YSLVEKRINQALRISLLLGLITTVILLVIPDELGKLFYPGR--------PDAGNFIRVLAPSFPFLYLSAPLQSILQGLG 380 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68999999999999999999999999997667764158998--------5388899999988999998899999997315
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHH
Q ss_conf 101346777888689999987520--2112004999999999999999999999711578898899-9999999999999
Q gi|254780793|r 382 DMKAPMKFTIVSIAINLTIAIGSF--PFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTI-YRILSVSISAGLM 458 (518)
Q Consensus 382 ~~~~~~~~~~~~~~vni~l~~~li--~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~-~~~~~~~~~~~im 458 (518)
|+|.++++++++.++++.+-+.|. |.+|++|.|++-.+.....+.+++..++|+.....+.+++ .|.....+ ++.
T Consensus 381 ~~~~~l~NSlI~~iv~~~~lf~Lt~~P~i~I~G~a~~~~~~~~l~~~Ln~~~~~K~~~i~i~~~~~v~kP~~~l~--~~l 458 (493)
T TIGR02900 381 KQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYALTIIITSVLVLVLNLAEIKKNIRITIDLSEFVLKPIFALL--GIL 458 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHH--HHH
T ss_conf 446999999999999999999998530467899999999999999998699876552215115676873799999--999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998655310002799999999999999999999
Q gi|254780793|r 459 GFFIILFRPYFNQFSSATTFFDPFKNLVIMLSGAMLVYLF 498 (518)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vY~~ 498 (518)
+..+........ .....+......+..+..+|..
T Consensus 459 ~~~~l~~~~~~~------~~~~~~~~~~~~i~~~~~~Y~~ 492 (493)
T TIGR02900 459 VYLILSLLKYII------FNVNILINLLLIIILGFSIYIL 492 (493)
T ss_pred HHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999888740------4534679999999999999982
No 5
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=0 Score=307.51 Aligned_cols=475 Identities=13% Similarity=0.085 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
|.+||..+.+..+...++++++-.+.+||.+++++.+ .+..+..+..+...+...| ++++++ ++ ++++ +
T Consensus 6 k~~~G~~W~~~~~~~~~~i~~v~~iiLARlL~P~dfG-l~a~a~~i~~~~~~~~d~G-~~~ali----q~--~~~~---~ 74 (492)
T PRK10459 6 KTISGAKWTAISTVIIIGLQLVQMTVLARIIDNHQFG-LLTMSLVIIAFADTLSDFG-IGASII----QR--KDIS---H 74 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCC-HHHHHH----CC--CCCC---H
T ss_conf 9881447999999999999999999999975999999-9999999999999999758-469996----68--8898---7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+..++.++...+.+..+.++.+..+|.+..+. ++++ ....++++++..++.++....++.+|.+.||+..
T Consensus 75 ~~~~t~f~l~l~~g~~l~~ll~~~a~~ia~~y------~~p~----l~~ll~~l~l~~~i~~~~~~~~a~l~r~l~Fk~~ 144 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY------HNPE----LAPLIKTLSLAFVIIPIGQQFRYLLQKDLEFNKL 144 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89959999999999999999999999999984------8757----9999999999999999889999999998532999
Q ss_pred HHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99998540103467777623568654432000122111011100023101210365444567754324100013468887
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLM 241 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~ 241 (518)
+..++..+++.....+...+ ...++++++++.+++..+.....+...++ ++++.+.+..++.|++++++.|..
T Consensus 145 a~~~~~~~l~~~~v~i~lA~----~g~g~walv~~~l~~~~~~~il~~~~~~~---~~rp~~~f~~~~~k~~~~Fg~~l~ 217 (492)
T PRK10459 145 GKIEISSVLAGFTFTVVSAF----FWPLAMAAILGYLVNSSVKTLLFGYFGRK---IYRPGLHFSLASVSPNLSFGAFQT 217 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999----85589999999999999999999999830---579876627888999998879999
Q ss_pred HHHHHCCCHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 643201202333202556--556630577775332110000001112322100234444332236789998975411344
Q gi|254780793|r 242 VTGGIIQISNIVGRAIAS--RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISF 319 (518)
Q Consensus 242 l~~~~~~i~~~i~~~~as--~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~ 319 (518)
.++..++++..+|+.+.+ .++.+++.|+.|.++.++|...++.+++.+.+|.+|+. ++|+++.++.+.+..++..+
T Consensus 218 ~~~l~~~i~~n~d~liiG~~~g~~~lG~Y~~A~~l~~~p~~~i~~~i~~V~~P~~s~~--q~d~~~l~~~~~~~~~~~~~ 295 (492)
T PRK10459 218 ADRIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPLKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGI 295 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999859999999728988659999999999999999999987799999998--35689999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21589999985257231112104786445545666655542010567753123202354433101346777888689999
Q gi|254780793|r 320 FGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLT 399 (518)
Q Consensus 320 i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~ 399 (518)
+++|+.+++...++|++.++|| |++....+.++++++..++.++.....+.+.|.||++..++.+++...++++
T Consensus 296 i~~P~~~gla~~A~~~V~llfG------~kW~~av~~l~iL~l~~~~~~~~~~~~~ll~a~Gr~~~~~~~~~~~~~i~~~ 369 (492)
T PRK10459 296 INFPLLLGLMVVSNNFVPLVFG------EKWNSAIPVLQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIP 369 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999987999999607------2077689999999999999999999999998559744699999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98752021120049999999999999999999997115788988999999999999999999999999865531000279
Q gi|254780793|r 400 IAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFF 479 (518)
Q Consensus 400 l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~im~~~~~~~~~~~~~~~~~~~~~ 479 (518)
..+...+.+|..|++++.++++.+.+...++++.|+......+..++...++...+..|....+........ ..
T Consensus 370 ~i~~~~~~~G~~gva~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~------~~ 443 (492)
T PRK10459 370 AIVIGGQLAGLIGVALGFLLVSIINTILGYFLMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYGLGILLKG------QL 443 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CC
T ss_conf 999999871599999999999999999999999999957459999999999999999999999999998525------42
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999999999999999999996007899999975269
Q gi|254780793|r 480 DPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIRK 518 (518)
Q Consensus 480 ~~~~~l~~~i~~~~~vY~~~l~l~~~~~~~~~l~~~~rr 518 (518)
+....+.+.+.+|+.+|...+++++.+...|..+.++||
T Consensus 444 ~~~~~l~~~v~~g~~~y~~~~~~~~~~~~~e~~~~f~~~ 482 (492)
T PRK10459 444 ALVMLLAVQVAVGVLAFLLMIVLSRHALVVEVKRQFCRS 482 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 089999999999999999999995319999999999877
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=0 Score=264.49 Aligned_cols=417 Identities=12% Similarity=0.036 Sum_probs=338.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 36889999999999999999999999999577757899999999789999999757789999999999984489789999
Q gi|254780793|r 3 IIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQR 82 (518)
Q Consensus 3 ~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~ 82 (518)
+.|-+...+.+.+..-+.+.+....++++.|+++.+ |-..++.+.+++..+.. .++.+-....+++.+++|+|++++
T Consensus 17 ~~~laiP~i~~~l~~~ly~ivD~~fvG~~~G~~alA-Av~~~~pi~~~~~~~~~--~lg~G~~~lis~~~G~~~~~~a~~ 93 (456)
T PRK09575 17 FWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLA-GINMAWPVIGIILGIGL--MVGMGTGSLLSIYRGEGDLQKAKT 93 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999999999999999999944726898999-99999999999999999--999999999999976999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999996534344457887541011112456554443321246888765688998842227999
Q gi|254780793|r 83 LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIAS 162 (518)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a 162 (518)
..++.+....+.+.++++++++++|++...+++ +++..+++.+|+++.++..++..+....++++|+.+|.+.|.
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~~~~~il~~lga-----~~~v~~~a~~Yl~i~~~g~~~~~~~~~~~~~lra~G~~~~~~ 168 (456)
T PRK09575 94 ILTTGLLLLLLLGPIVSIILWLFADDFLLAQGA-----EGRTLELGLQYIQVLTWGCLFTIGAIALPMLVRNDESPNLAT 168 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999999999999999999999999988397-----899999999999999998899999999999998289983058
Q ss_pred HHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCC--CCCCC-CCCCCCCCCHHHHHHHH
Q ss_conf 9998540103467777623568654432000122111011100023101210365--44456-77543241000134688
Q gi|254780793|r 163 IAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGV--KLRFQ-YPRLTHNVKFFLKLTFP 239 (518)
Q Consensus 163 ~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~k~~l~~~~p 239 (518)
...++.++.+++...+.. ...+.|+.+.|++++++..+..++...+..+.+. +++++ ...+++..|++++.+.|
T Consensus 169 ~~~i~~~i~NiiLd~lfI---~~~~lGv~GAAlATvisq~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~i~~iG~p 245 (456)
T PRK09575 169 GLMVLGALINIVLDYLFI---GVLDWGLTGAAIATALAQLVVTILGLGYFFSSRANIKLSLKELLFNWSLAPQIVLLGSS 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHHHHH
T ss_conf 999997788998999997---20899864499999999999999999999906861475376311569999999998479
Q ss_pred HHHHHHHCCCHHH-HHCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8764320120233-32025565566-305777753321100000011123221002344443322367899989754113
Q gi|254780793|r 240 LMVTGGIIQISNI-VGRAIASRETG-IISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECI 317 (518)
Q Consensus 240 ~~l~~~~~~i~~~-i~~~~as~~~g-~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~ 317 (518)
..+.+........ .++.+..+++. ++++++.+.++.++.. ....+++.+..|..++++++||.|++|+..+.+++..
T Consensus 246 ~~i~~~~~s~~~~~~n~~~~~~g~~~~vAa~~i~~~i~~~~~-~~~~Gl~~a~~~lvg~n~GA~~~~rv~~~~~~~~~~~ 324 (456)
T PRK09575 246 SFFMYLYGSFVVALHNRLFMEYGSSLTVGAFAIVGYLMVLYY-LVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVS 324 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999776999999999999999999-9999998878999999856998899999999999999
Q ss_pred CCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44215899999852572311121047864455456666555420105677531232023544331013467778886899
Q gi|254780793|r 318 SFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAIN 397 (518)
Q Consensus 318 ~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vn 397 (518)
..++....+.+..++++++.+ |.. -|++....+...++++..+.++.+...+....+++.||++.++..++....+.
T Consensus 325 ~~~~~~~~~l~~~f~~~l~~l-F~~--~d~~vi~~~~~~l~i~~~~~~~~g~~~v~~~~f~a~g~~~~~~~~sl~~~~i~ 401 (456)
T PRK09575 325 VIAGIAWVLLLNLFPETMVSL-FNS--GDPELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQ 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999987-569--98899999999999999999999999999999988799499999999999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998752021120049999999999999999999997
Q gi|254780793|r 398 LTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLK 434 (518)
Q Consensus 398 i~l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k 434 (518)
+++.+++...+|..|+++|..+++...+++...+++|
T Consensus 402 lp~~~il~~~~G~~GiW~a~~is~~~~~~~~~~~~~r 438 (456)
T PRK09575 402 LPFLFILPKWLGIDGVWLAMPLSNIALSLVVAPMLWR 438 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999817599999999999999999999999
No 7
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=100.00 E-value=1.3e-44 Score=252.10 Aligned_cols=400 Identities=21% Similarity=0.299 Sum_probs=296.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 91368899999999999999999999999995777578999999997899999997577899999999999844897899
Q gi|254780793|r 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESA 80 (518)
Q Consensus 1 m~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~ 80 (518)
.|+.|++.+...+++.++++|++..++++|.+|+++ .+.|..++++..++..+...| ++.++++..++++++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~-~G~~~~~~~~~~~~~~~~~~G-~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEG-FGLYALALAIIGLFSILADFG-LPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCHHHHHH
T ss_conf 899998999999999999999999999999919999-999999999999999999948-209999998886010056899
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 999-9999999999999999999996534344457887541011112456554443321246888765688998842227
Q gi|254780793|r 81 QRL-SSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYF 159 (518)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~ 159 (518)
+.. .............+.........+. + +......++.....++.+..+..++++|++++++
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI-----------D-----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFG 147 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------C-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999984213-----------2-----0489999999999999999999999999999899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHH-CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 999999854010346777762356865443200012211101110002310121-0365444567754324100013468
Q gi|254780793|r 160 IASIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAK-NDGVKLRFQYPRLTHNVKFFLKLTF 238 (518)
Q Consensus 160 ~~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~l~~~~ 238 (518)
..+.+ .+.+ ..+....+.... .......|+...+......+...... +.+...++..+..++..|+.++.+.
T Consensus 148 ~~~~~-~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (480)
T COG2244 148 PLALS-IVSS-IFLLAAVFALLF-----AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGL 220 (480)
T ss_pred HHHHH-HHHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999-9999-999999999999-----9999999999999999999999999999731442266516789999999998
Q ss_pred HHHHHHHHCCCHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 887643201202333202556--556630577775332110000001112322100234444332236789998975411
Q gi|254780793|r 239 PLMVTGGIIQISNIVGRAIAS--RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 239 p~~l~~~~~~i~~~i~~~~as--~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
|...++....+...+|+.+.+ .++..++.|+.++++.+.+. .+..+++.+++|.+||.++++|+++.++..+++.++
T Consensus 221 p~~~~~~~~~l~~~~D~~~i~~~l~~~~~G~Y~~a~~i~~~~~-~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~ 299 (480)
T COG2244 221 PLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLL-IVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKL 299 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999857999999957879327999999999999-999999999999999987668767899999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34421589999985257231112104786445545666655542010567753123202354433101346777888689
Q gi|254780793|r 317 ISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAI 396 (518)
Q Consensus 317 ~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~v 396 (518)
...+++|..+++..+++|++.++|+ +++......+.+++++..+.++.......+++.||++..++.+.++.++
T Consensus 300 ~~~~~~p~~~~l~~~~~~~i~~~fg------~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~ 373 (480)
T COG2244 300 LLLISIPALLGLLLLAPPIITLLFG------EKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALL 373 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999999989999999828------6302169999999999999999999999999836017999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998752021120049999999999999999999997
Q gi|254780793|r 397 NLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLK 434 (518)
Q Consensus 397 ni~l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k 434 (518)
|.++|++++|.+|..|++.++ .+ .........+..+
T Consensus 374 ~~~l~~~li~~~g~~g~~~a~-~~-~~~~~~~~~~~~~ 409 (480)
T COG2244 374 NLILNLLLIPRFGLIGAAIAT-AS-VIALALLLFYILR 409 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHH
T ss_conf 999999999886699999999-99-9999999999999
No 8
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.8e-44 Score=250.22 Aligned_cols=422 Identities=12% Similarity=0.093 Sum_probs=343.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
++.|=+..++...+..-+.+++....+++ +|+++.+ |..++.++......+. . +++.+..+..+++.+++|+|+++
T Consensus 10 ~il~la~P~~~~~l~~~~~~~vD~~~vg~-lg~~alA-av~~~~~i~~~~~~~~-~-gl~~g~~~lvsq~~Ga~~~~~~~ 85 (452)
T PRK01766 10 QLLALALPILLAQVAQTAMGFVDTVMAGG-VSATDLA-AVAIGTSIWLPVILFG-H-GLLLALTPIVAQLNGAGRRERIA 85 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHH-HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999872-0899999-9999999999999999-9-99999999999997899889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+...+.+....+.+..+.++.+.+.|++...+. .|++..+.+.+|++++.+..++..+...+++++|+.+|.+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~g-----~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~t~~~ 160 (452)
T PRK01766 86 HQVRQGLWLALFLSVLIMLVLYNAVPPILNMMN-----LEPDVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 160 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999999999999999999819-----829999999999999998789999999999998847984999
Q ss_pred HHHHHHHHCHHHHHHHHHHC-CCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCC--CCCCCC---CCCCCCCCHHHH
Q ss_conf 99998540103467777623-568654432000122111011100023101210365--444567---754324100013
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALW-HPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGV--KLRFQY---PRLTHNVKFFLK 235 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~-~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~k~~l~ 235 (518)
....++.++.++....+..+ ....++.|+.+.++++.++..++......+.++.+. +.+... +..++..|++++
T Consensus 161 m~~~~~~~ilNi~l~~~lIfG~~g~p~lGv~GaA~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 240 (452)
T PRK01766 161 MVIGFLGLLVNIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 240 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHCCCCHHHHHHHHH
T ss_conf 99999999999988889876035763006889999999999999999999999845500200002103234999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46888764320120233320-25565566305777753321100000011123221002344443322367899989754
Q gi|254780793|r 236 LTFPLMVTGGIIQISNIVGR-AIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAI 314 (518)
Q Consensus 236 ~~~p~~l~~~~~~i~~~i~~-~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~ 314 (518)
.+.|..+..........+.+ ..+++++.++++++.+.++.++.. ++..+++.+.-|.++++.++||.++.++..++++
T Consensus 241 ig~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~i~~~i~~l~~-~~~~g~~~a~~~~vg~~~Ga~~~~~a~~~~~~~~ 319 (452)
T PRK01766 241 LGLPIGLAIFFEVSLFAVVALLVSPLGTVTVAAHQIALNFSSLLF-MLPMSVAMALTIRVGFELGAGRYLDARQAAYIGL 319 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 732899999999999999999997468799999999999999998-8888788889899999974999999999999999
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11344215899999852572311121047864455456666555420105677531232023544331013467778886
Q gi|254780793|r 315 ECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI 394 (518)
Q Consensus 315 ~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~ 394 (518)
+....++...+..++.+++++..+ |.. |++-.+.....+.+.++..++.+...+....+++.||+|.+++.++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~i~~l-ft~---d~~v~~~~~~~l~~~~~~~~~~~~~~v~~g~lrg~G~t~~~~~~~~~~~ 395 (452)
T PRK01766 320 AVGLAMALLTAILLVLFREQIALL-YTD---DPEVIALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAY 395 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999999977878774-599---8999999999999999999999999999999895564599999999999
Q ss_pred -HHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -899999875202--1120049999999999999999999997115
Q gi|254780793|r 395 -AINLTIAIGSFP--FIGGYGIALAEVSSSWVNTICLAITLLKRKQ 437 (518)
Q Consensus 395 -~vni~l~~~li~--~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~ 437 (518)
++.+++.+++.. .+|..|++++..+++.+...++.++++|..+
T Consensus 396 w~i~iPl~~ll~~~~~~G~~GiW~~~~~~~~~~~~~~~~r~r~~~~ 441 (452)
T PRK01766 396 WVIGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQR 441 (452)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999866875789999999999999999999999870
No 9
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.3e-43 Score=244.60 Aligned_cols=420 Identities=15% Similarity=0.143 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
.++|-+....+++++.-..+++....++++ | .+.-.+-.+++++.+.+..+.. .++.+..+..+++.+++|+|+++
T Consensus 18 ~l~~la~P~i~~~l~~~l~~~vD~~~vG~~-~-~~alaav~la~~i~~~~~~~~~--gl~~g~~~liaq~~Ga~~~~~~~ 93 (455)
T COG0534 18 LLLKLAIPIILGNLLQTLYGLVDTFMVGHL-G-AEALAAVGLANPIFFLIIAIFI--GLGTGTTVLVAQAIGAGDRKKAK 93 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999999999999999999999965-0-8999999999999999999999--99999999999997499889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+..++.+....+.+..+.++.+.+.+++...+.++ ++..+.+.+|+++.....++..+...+++.+|+.+|.+.|
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~-----~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 168 (455)
T COG0534 94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAP-----AEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTP 168 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999999999999699999985997-----6799999999999999999999999999999858991487
Q ss_pred HHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCC---CC-CCCCCCCCCCCCHHHHHH
Q ss_conf 99998540103467777623568654432000122111011100023101210365---44-456775432410001346
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGV---KL-RFQYPRLTHNVKFFLKLT 237 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~k~~l~~~ 237 (518)
...+++.|+.+++...+..+...+. .|+.+.++++.++..+..+....+.+|.+. .. ....+.+++..|++++.+
T Consensus 169 m~~~~~~~~lNi~Ln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG 247 (455)
T COG0534 169 MYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLG 247 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH-HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 9999999999999979999951312-122209999999999999999999996343003554201479999999999966
Q ss_pred HHHHHHHHHCCCHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8887643201202333-202556556630577775332110000001112322100234444332236789998975411
Q gi|254780793|r 238 FPLMVTGGIIQISNIV-GRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 238 ~p~~l~~~~~~i~~~i-~~~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
.|..+.+........+ ...++++++..+++++.+.++.++.. .+..+++++.-|..++++++||.|+.++..+.+...
T Consensus 248 ~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~ 326 (455)
T COG0534 248 LPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKL 326 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 4699999999999999999999759899999999999999999-999999999999999987799999999999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 344215899999852572311121047864455456666555420105677531232023544331013467778886-8
Q gi|254780793|r 317 ISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI-A 395 (518)
Q Consensus 317 ~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~-~ 395 (518)
...++......++.+++|+++++.. |++-.+.+...+.+.++..++.+........+++.||+|.|+..+..+. .
T Consensus 327 ~~~~~~~~~~i~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~~~~~~~~~~~~~~g~lrg~g~~~~~~~~~~~~~~~ 402 (455)
T COG0534 327 SLLIALLIALLLLLFREPIISLFTT----DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWG 402 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999989999999789----499999999999999999999999999999975258719989999999999
Q ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998752021-12004999999999999999999999711
Q gi|254780793|r 396 INLTIAIGSFPF-IGGYGIALAEVSSSWVNTICLAITLLKRK 436 (518)
Q Consensus 396 vni~l~~~li~~-~G~~G~a~at~i~~~~~~~~~~~~l~k~~ 436 (518)
+.+++.+++.+. +|..|++++...++.+......++.+|+.
T Consensus 403 ~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 403 FRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999888417427669999999999999999999998
No 10
>PRK10189 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=244.40 Aligned_cols=422 Identities=12% Similarity=0.071 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
+++|=+..+...+++....|++....++ .+|+++.+ |--.+.++..++..+.. +++.+..+..+++.+++|+|+++
T Consensus 33 ~il~LA~Pi~l~~l~~~l~~~vDt~mvg-~lG~~alA-Avgl~~~i~~~~~~~~~--gl~~g~~~lvaq~~Ga~~~~~~~ 108 (481)
T PRK10189 33 EITPLAVPIFMENACVLLMGVLSTFLVS-WLGKEAMA-GVGLADSFNMVIMAFFA--AIDLGTTVVVAFSLGKRDRRRAR 108 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999999999999999999999997-63899999-99999999999999999--99999999999987399988799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+...+.+....+.+.+++.+..++.|++...+..+ .|++..+++..|+++..+..|+..+...+++++|+.+|.+.|
T Consensus 109 ~~~~~~l~l~~~~~~~~~~~~~~~~~~il~l~~~~---~~~~v~~~a~~Yl~i~~~~~p~~~~~~~~~~~lrg~G~tk~p 185 (481)
T PRK10189 109 VAARQSLVIMTLFAVLLAVLIHFFGEQIIDFVAGQ---ATPEVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTKIP 185 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999999999999999999987579---988999999999999999999999999999999877882889
Q ss_pred HHHHHHHHCHHHHHHHHHHCC-CCCCCCCCEEHHHHHHHHHHHHHCCCCC-HHHCCC--CCCCCC--C-CCCCCCCCHHH
Q ss_conf 999985401034677776235-6865443200012211101110002310-121036--544456--7-75432410001
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWH-PSSPQETTYLLAWGVFLSNVVHFWIVYC-CAKNDG--VKLRFQ--Y-PRLTHNVKFFL 234 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~-~~~~~~~~~~~a~~~~~g~~~~~~~~~~-~~~~~~--~~~~~~--~-~~~~~~~k~~l 234 (518)
....++.|+.+++......+. ...+..|+.+.|+|++++..++...... ..++.+ .+.+.+ + +.+.+..|+++
T Consensus 186 m~i~~~~~ilNivln~ilIfG~~g~P~lGv~GAAiAT~is~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il 265 (481)
T PRK10189 186 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAILWVLMIGFNPALRIPLKSYFKPLNFSIIWEVM 265 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCCCCCHHHHHHHH
T ss_conf 99999999999999999860247884003899999999999999999999999965743110187650668999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHH-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34688876432012023332-02556556630577775332110000001112322100234444332236789998975
Q gi|254780793|r 235 KLTFPLMVTGGIIQISNIVG-RAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQA 313 (518)
Q Consensus 235 ~~~~p~~l~~~~~~i~~~i~-~~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~ 313 (518)
+.+.|..+.....+....+. .+++++++.++++++.+.++.++.. ++..+++.+.-+.++++.++||.++.++..+++
T Consensus 266 ~iG~P~~~~~~~~~~~~~~~~~~i~~lG~~alAA~~I~~~i~~l~~-~~~~gl~~A~~~~VGq~lGa~~~~~a~~~~~~~ 344 (481)
T PRK10189 266 GIGIPASVESVLFNSGKLLTQMFVAGMGTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGRRLGKGQIAQAERQLRHV 344 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9738999999999999999999998358189999999999999999-999999999999999997799899999999999
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 41134421589999985257231112104786445545666655542010567753123202354433101346777888
Q gi|254780793|r 314 IECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVS 393 (518)
Q Consensus 314 ~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~ 393 (518)
......++...++.+..+++++.. +|.+ |+|-.+.....+.+.+...++.+...+....+++.||+|.|+..++++
T Consensus 345 ~~~~~~~~~~~~l~~~~~~~~i~~-lft~---d~ev~~~~~~~l~i~a~~~~~~~~~~v~~g~LrG~Gdt~~~~~i~~i~ 420 (481)
T PRK10189 345 FWLSTLGLTAIAWLTAPFAGFMAS-FYTQ---DPQVKHVVKILIWLNALFMPIWAASWVLPAGFKGARDARYAMWVSMLG 420 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999999999999999998-8499---899999999999999999999999999999976346229999999999
Q ss_pred H-HHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6-89999987520--211200499999999999999999999971
Q gi|254780793|r 394 I-AINLTIAIGSF--PFIGGYGIALAEVSSSWVNTICLAITLLKR 435 (518)
Q Consensus 394 ~-~vni~l~~~li--~~~G~~G~a~at~i~~~~~~~~~~~~l~k~ 435 (518)
. .+.+++.+++. ..+|..|++++..+.+.+.+++++++.++.
T Consensus 421 ~w~v~ipl~y~l~~~~~~G~~GiW~~~~~~~~v~~vl~~~r~~~g 465 (481)
T PRK10189 421 MWGCRVVAGYVLGIMLGWGVVGVWMGMFLDWAVRGVLFYWRMVTG 465 (481)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998479899933669999999999999999479
No 11
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.5e-40 Score=228.63 Aligned_cols=422 Identities=11% Similarity=0.015 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
+++|=+..+++..++.-..+++....+++ +|+++.+ +-.++.++.+++..+. .| +..+.-+..+++.+++|+|+++
T Consensus 11 ~ll~La~Pi~~~~l~~~l~~~vD~~~vG~-lg~~alA-av~~~~~~~~~~~~~~-~g-~~~g~~~lvaq~~Ga~~~~~~~ 86 (462)
T PRK00187 11 ALLRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALA-GGGLGAASYSFVSIFC-VG-VIAAVGTLVAIRHGAGDIEGAT 86 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999875-5899999-9999999999999999-99-9999999999997799989899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+..++.+......+.+.+++.+ +.+++...+. .+++..+.+.+++++..+.+++.......++++++.+|.+++
T Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~-~~~~il~~~g-----~~~~~~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 160 (462)
T PRK00187 87 RLAQSGLWLAWLLALVAALLLW-NLEPLLLLFG-----QAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9999999999999999999999-9999999869-----899999999999999999999999999999999867997169
Q ss_pred HHHHHHHHCHHHHHHHHHHCC-CCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHC-CCCC-CCCC---CCCCCCCCCHHHH
Q ss_conf 999985401034677776235-68654432000122111011100023101210-3654-4456---7754324100013
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWH-PSSPQETTYLLAWGVFLSNVVHFWIVYCCAKN-DGVK-LRFQ---YPRLTHNVKFFLK 235 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~-~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~k~~l~ 235 (518)
....++.++.+++......+. ...+..|+.+.++++.+...........+.++ .+.+ ++.+ .+..++..|++++
T Consensus 161 ~~~~~~~~v~Ni~Ln~~lI~g~~g~p~lGv~Gaa~at~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 240 (462)
T PRK00187 161 MVISLAGAVANLALNYALIEGWFGLPKLGLMGIGLVTALVSNCMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWR 240 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999988861445655321689889999999999999999999905523011033124577999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 468887643201202333202-5565566305777753321100000011123221002344443322367899989754
Q gi|254780793|r 236 LTFPLMVTGGIIQISNIVGRA-IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAI 314 (518)
Q Consensus 236 ~~~p~~l~~~~~~i~~~i~~~-~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~ 314 (518)
.+.|..+.....+....+... .+.+++.++++++.+.++.++.. .+..+++.+.-+.++++.++||.|+.++..+.++
T Consensus 241 ig~P~~~~~~~~~~~~~~~~~~~~~lG~~alAA~~i~~~i~~l~~-~~~~gi~~A~~~~vG~~lGa~~~~~a~~~~~~~~ 319 (462)
T PRK00187 241 LGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQAVSVAF-MVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGI 319 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 986799999999999999999998568099999999999999999-9999999999999999876899999999999999
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCHHHHCCC-CCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 113442158999998525723111210478-6445545666655542010567753123202354433101346777888
Q gi|254780793|r 315 ECISFFGIPSAVALFMLSKEIVQTLYERGA-FSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVS 393 (518)
Q Consensus 315 ~~~~~i~~p~~~~l~~~~~~ii~llf~~g~-F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~ 393 (518)
.....++...++.+..+++++..+.-...+ -+.|-.+.....+.+.+...++.+.+.+....+++.||+|.+++.++++
T Consensus 320 ~~~~~~~~~~~~~~~~f~~~i~~lFt~~~d~~~~evi~l~~~~l~i~~~~~~~~~~~~v~~g~lrg~G~~~~~~~~~~i~ 399 (462)
T PRK00187 320 GFGAVAMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLAC 399 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999999999999862889852399999999999999999999999999999999827439999999999
Q ss_pred H-HHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6-8999998752021--120049999999999999999999997
Q gi|254780793|r 394 I-AINLTIAIGSFPF--IGGYGIALAEVSSSWVNTICLAITLLK 434 (518)
Q Consensus 394 ~-~vni~l~~~li~~--~G~~G~a~at~i~~~~~~~~~~~~l~k 434 (518)
. ++.+++.+++... +|..|++++..++..+..+.++...+.
T Consensus 400 ~w~v~vPla~~l~~~~~~G~~GiW~g~~i~~~~~~i~~~~~~~w 443 (462)
T PRK00187 400 YWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (462)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999857992336898999999999999999999
No 12
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=226.03 Aligned_cols=419 Identities=11% Similarity=0.074 Sum_probs=322.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
++.|=+...+.+.+..-+.|++....+.+. |..+...+-.++.++.+.+..+.. .++.+..+..+|+.++||+|+++
T Consensus 10 ~l~~LA~P~i~~~l~~~l~~lvDt~~vG~l-g~~~~lAav~~~~~~~~~~~~~~~--~l~~g~~~lvAq~~Ga~~~~~~~ 86 (439)
T PRK10367 10 ALWHLALPMIFSNITVPLLGLVDTAVIGHL-DSPVYLGGVAVGATATSFLFMLLL--FLRMSTTGLTAQAYGAKNPQALA 86 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 399999999999999999999999996188-876999999999999999999999--99999999999998089999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+...+.+....+.+.++.++.+.+.+++...+.+ +++..+.+.+|+++..+..|+..+....++++|+.+|.+.|
T Consensus 87 ~~~~~~l~l~~~~g~~~~~~~~~~~~~~l~~~g~-----~~~v~~~a~~Yl~i~~~g~p~~~~~~~~~~~lrg~g~t~~p 161 (439)
T PRK10367 87 RALVQPLLLALGAGALIALLRTPIIDLALHIVGG-----SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAP 161 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999999999999999999999999998099-----86669999999999999989999999999999877870889
Q ss_pred HHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCC----CCCCCCCCCHHHHHH
Q ss_conf 9999854010346777762356865443200012211101110002310121036544456----775432410001346
Q gi|254780793|r 162 SIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQ----YPRLTHNVKFFLKLT 237 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~k~~l~~~ 237 (518)
....++.|+.+++...+..+. .+.++.+.|++++++..+...+.....+|.....+.+ ++..+++.|++++.+
T Consensus 162 m~~~~~~~vlNiiLd~~fI~g---~~lGv~GAA~AT~is~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig 238 (439)
T PRK10367 162 VILLVVGNILNIVLDVWLVMG---LHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISGEMLKTAWRGNFRRLLALN 238 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999987---07632899999999999999999999999860301567763141499999999835
Q ss_pred HHHHHHHHHCCCHHHH-HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8887643201202333-202556556630577775332110000001112322100234444332236789998975411
Q gi|254780793|r 238 FPLMVTGGIIQISNIV-GRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 238 ~p~~l~~~~~~i~~~i-~~~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
.|..+.+...+..... ....+++++.++++++.+.++.++.. .+..+++.+..|..++++++||.++.++..+++.+.
T Consensus 239 ~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~-~~~~g~a~a~~~lvGq~~GA~~~~~~~~~~~~~~~~ 317 (439)
T PRK10367 239 RDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQ 317 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 6399999999999999999998728899999999999999999-999999999999999987799899999999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34421589999985257231112104786445545666655542010567753123202354433101346777888689
Q gi|254780793|r 317 ISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAI 396 (518)
Q Consensus 317 ~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~v 396 (518)
...+++..++..+++++|++.+ |.. |+|-.......+.+....-+......++..++.+.+|++.. +.+.....+
T Consensus 318 ~~~~~~~~~~i~~lf~~~i~~l-Ft~---d~~v~~l~~~~l~~~~~~~~~~~~~~~l~Gv~~Ga~~~~~~-~~~~~~~~~ 392 (439)
T PRK10367 318 SGIVALLFSVVYLLAGEHIIAL-LTS---LPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEM-RNSMAVAAA 392 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHH
T ss_conf 9999999999999999999877-299---59999999999999999999999999998999932141779-999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998752021120049999999999999999999997115
Q gi|254780793|r 397 NLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQ 437 (518)
Q Consensus 397 ni~l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~ 437 (518)
...+.++..+.+|..|+|+|..+...+..+.+.+..+|+.+
T Consensus 393 ~~~~~l~~~~~lG~~GiW~a~~i~~~~r~i~l~~~~rr~~r 433 (439)
T PRK10367 393 GFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWR 433 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998758899999999999999999999999804
No 13
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=100.00 E-value=1.5e-35 Score=204.11 Aligned_cols=391 Identities=16% Similarity=0.150 Sum_probs=322.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999995777578999999-99789999999757789999999999984489789999999999
Q gi|254780793|r 10 VCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVA-FYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIF 88 (518)
Q Consensus 10 ~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a-~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~ 88 (518)
...+++...+.+++ |..+.=.+|+.+.+ +--++ ..+-...+. ..-| +..+..|..+|..+++|+|+.++...+.+
T Consensus 2 ~~~~~~~q~~~~l~-D~~~vG~lg~~~La-av~~g~~~~~~~~~~-~~~g-l~~a~~~~~aq~~Ga~~~~~~~~~~~~~~ 77 (412)
T TIGR00797 2 AILANILQPLLGLV-DTAFVGHLGPVDLA-AVGLGISSVFMLLIS-ILLG-LGTATTALVAQAVGAGNRQRLGRQAQQSL 77 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCCHHHHH-HHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 17899999888798-66300231189999-999999999999999-9999-99889999999883324899999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999999999996534344457887541011112456554443321246888765688998842227999999854
Q gi|254780793|r 89 SILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVI 168 (518)
Q Consensus 89 ~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~vi~ 168 (518)
....+.+..+.++.+.+.+.+..+..+ +++..+++.+|+|++.+..|.+.+....++.+|+.+|-++|.+..++-
T Consensus 78 ~la~~lg~~~~~~~~~~~~~l~~~~~~-----~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~ 152 (412)
T TIGR00797 78 LLALLLGLPVLLVGLFFIDPLLSLMGA-----DGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIG 152 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999888889984179-----888999899989999999999999999999974542258999999999
Q ss_pred HCHHHHHHHHHHC-CCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC----CCCC--CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0103467777623-56865443200012211101110002310121036----5444--567754324100013468887
Q gi|254780793|r 169 NVFPIFALTYALW-HPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG----VKLR--FQYPRLTHNVKFFLKLTFPLM 241 (518)
Q Consensus 169 ni~~i~~~~~~~~-~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~k~~l~~~~p~~ 241 (518)
|+.++....+..+ ....|+.|+.|.||+++++..+.+++...+.++.. .+.+ .....+++..|+++|++.|..
T Consensus 153 ~~~Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~ 232 (412)
T TIGR00797 153 NLLNIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLLKLGLPIA 232 (412)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999983898717888712477766899999999999999999997121243212244433025899999998708999
Q ss_pred HHHHHCCCHHHHH-CCCCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6432012023332-0255655-6630577775332110000001112322100234444332236789998975411344
Q gi|254780793|r 242 VTGGIIQISNIVG-RAIASRE-TGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISF 319 (518)
Q Consensus 242 l~~~~~~i~~~i~-~~~as~~-~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~ 319 (518)
+.....+....+- ...+..+ +..+++...+.++.++.. +...+++.+.--..+++.++||.|+.++..++..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~-m~~~G~~~A~~~~vG~~lGa~~~~~a~~~~~~~~~~~~~ 311 (412)
T TIGR00797 233 LRVILESLSFALVALLVARLGGSIALAAHQVALNVESLLF-MPAFGLGIAVSILVGQALGAGDPKRAKEVARVALKLSLL 311 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999873167324677899999999999-999899999999999985146878999999999999999
Q ss_pred CHHHHHHHHHHCCCC---CCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 215899999852572---311121047864455456666555420105677531232023544331013467778886-8
Q gi|254780793|r 320 FGIPSAVALFMLSKE---IVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI-A 395 (518)
Q Consensus 320 i~~p~~~~l~~~~~~---ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~-~ 395 (518)
++.-.++.+..++++ +.++ |- -|+|-.+.....+.+.++..+..++..++...+.+.||+|.++++++.+. +
T Consensus 312 ~~~~~~~~~~~~~~~g~Pi~~l-Ft---~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~G~lrG~G~~~~~~~~~~~~~~~ 387 (412)
T TIGR00797 312 LGLVLAIILILFREVGLPIARL-FT---NDPEVLELAASYLIFVALFQFSDGIQFVLSGVLRGAGDTKVILIITFISYWV 387 (412)
T ss_pred HHHHHHHHHHHHCCCCCCHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999830236424555-07---9576999999999999999987789999999998327257999999999999
Q ss_pred HHHHHHHHHC------CCCCCCHHH
Q ss_conf 9999987520------211200499
Q gi|254780793|r 396 INLTIAIGSF------PFIGGYGIA 414 (518)
Q Consensus 396 vni~l~~~li------~~~G~~G~a 414 (518)
+.+++.+++. +.+|..|.|
T Consensus 388 ~~lP~~~ll~~td~~~~~~g~~g~W 412 (412)
T TIGR00797 388 IGLPVGYLLGRTDLFYTGLGLNGLW 412 (412)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999996125665256520259
No 14
>PRK10189 hypothetical protein; Provisional
Probab=99.97 E-value=4.4e-29 Score=170.01 Aligned_cols=233 Identities=13% Similarity=0.196 Sum_probs=192.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 24100013468887643201202333202556-55663057777533211000000111232210023444433223678
Q gi|254780793|r 228 HNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKS 306 (518)
Q Consensus 228 ~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~ 306 (518)
.-.|+++++++|.++++...++..++|+.+.+ .++.++++...+.++..+...+ ...++...-+.+||++++||+++.
T Consensus 29 ~f~k~il~LA~Pi~l~~l~~~l~~~vDt~mvg~lG~~alAAvgl~~~i~~~~~~~-~~gl~~g~~~lvaq~~Ga~~~~~~ 107 (481)
T PRK10189 29 LFWREITPLAVPIFMENACVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAF-FAAIDLGTTVVVAFSLGKRDRRRA 107 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 8999999999999999999999999999999763899999999999999999999-999999999999998739998879
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99989754113442158999998525723111210478644554566665554201056775312320235443310134
Q gi|254780793|r 307 FELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAP 386 (518)
Q Consensus 307 ~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~ 386 (518)
++...+++.+..+++++.++.+..++++++.++-+ +-|++-......++++..+++|+..+.......+++.||+|.|
T Consensus 108 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~v~~~a~~Yl~i~~~~~p~~~~~~~~~~~lrg~G~tk~p 185 (481)
T PRK10189 108 RVAARQSLVIMTLFAVLLAVLIHFFGEQIIDFVAG--QATPEVKALALTYLELTVLSYPAAAITLIGSGALRGAGNTKIP 185 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999999999999999999998757--9988999999999999999999999999999999877882889
Q ss_pred HHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--C---------CCCCCHHHHHHHH
Q ss_conf 6777888689999987520------211200499999999999999999999971--1---------5788988999999
Q gi|254780793|r 387 MKFTIVSIAINLTIAIGSF------PFIGGYGIALAEVSSSWVNTICLAITLLKR--K---------QINLPFKTIYRIL 449 (518)
Q Consensus 387 ~~~~~~~~~vni~l~~~li------~~~G~~G~a~at~i~~~~~~~~~~~~l~k~--~---------~~~~~~~~~~~~~ 449 (518)
++.++.+.++|+++|++|+ |.+|+.|+|+||+++.++......+.+.++ . ..+.+++..++++
T Consensus 186 m~i~~~~~ilNivln~ilIfG~~g~P~lGv~GAAiAT~is~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il 265 (481)
T PRK10189 186 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAILWVLMIGFNPALRIPLKSYFKPLNFSIIWEVM 265 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCCCCCHHHHHHHH
T ss_conf 99999999999999999860247884003899999999999999999999999965743110187650668999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780793|r 450 SVSISAGLMGFFII 463 (518)
Q Consensus 450 ~~~~~~~im~~~~~ 463 (518)
+..+++.+......
T Consensus 266 ~iG~P~~~~~~~~~ 279 (481)
T PRK10189 266 GIGIPASVESVLFN 279 (481)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 97389999999999
No 15
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.97 E-value=3.2e-29 Score=170.77 Aligned_cols=232 Identities=16% Similarity=0.294 Sum_probs=196.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 54324100013468887643201202333202556-55663057777533211000000111232210023444433223
Q gi|254780793|r 225 RLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNK 303 (518)
Q Consensus 225 ~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~ 303 (518)
+.+++.|+++++++|.++++...++...+|+.+.+ .++.++++.+.+..+..+... +...+++..-+.+||++++||+
T Consensus 3 ~~~~e~K~il~la~P~~~~~l~~~~~~~vD~~~vg~lg~~alAav~~~~~i~~~~~~-~~~gl~~g~~~lvsq~~Ga~~~ 81 (452)
T PRK01766 3 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVIL-FGHGLLLALTPIVAQLNGAGRR 81 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCH
T ss_conf 479999999999999999999999999999999872089999999999999999999-9999999999999999789988
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 67899989754113442158999998525723111210478644554566665554201056775312320235443310
Q gi|254780793|r 304 QKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDM 383 (518)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~ 383 (518)
++.++...+++.....+++|.++..+...+|+..++ + -|++-...+..++++..+++++..+.......+++.||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~-g---~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~t 157 (452)
T PRK01766 82 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMM-N---LEPDVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKT 157 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 999999999999999999999999999999999981-9---829999999999999998789999999999998847984
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCHHHHHH
Q ss_conf 1346777888689999987520------21120049999999999999999999997115----------7889889999
Q gi|254780793|r 384 KAPMKFTIVSIAINLTIAIGSF------PFIGGYGIALAEVSSSWVNTICLAITLLKRKQ----------INLPFKTIYR 447 (518)
Q Consensus 384 ~~~~~~~~~~~~vni~l~~~li------~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~----------~~~~~~~~~~ 447 (518)
|.|++.++++.++|+++|++++ |.+|+.|+|+||.++.++.+....+++.|+.. .+.+++.+++
T Consensus 158 ~~~m~~~~~~~ilNi~l~~~lIfG~~g~p~lGv~GaA~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (452)
T PRK01766 158 KPTMVIGFLGLLVNIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKR 237 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHCCCCHHHHHH
T ss_conf 99999999999999988889876035763006889999999999999999999999845500200002103234999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780793|r 448 ILSVSISAGLMGFF 461 (518)
Q Consensus 448 ~~~~~~~~~im~~~ 461 (518)
+++..+++.+....
T Consensus 238 i~~ig~P~~~~~~~ 251 (452)
T PRK01766 238 LLKLGLPIGLAIFF 251 (452)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99973289999999
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.97 E-value=4.3e-29 Score=170.06 Aligned_cols=237 Identities=19% Similarity=0.266 Sum_probs=206.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4324100013468887643201202333202556-556630577775332110000001112322100234444332236
Q gi|254780793|r 226 LTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQ 304 (518)
Q Consensus 226 ~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~ 304 (518)
.++..|++++++.|.++++...+....+|+++.+ +++.+.++.+.+.++..++..+ ...+++..-+.+||++++||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~-~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAI-FIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHH
T ss_conf 115799999999999999999999999999999965089999999999999999999-9999999999999997499889
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78999897541134421589999985257231112104786445545666655542010567753123202354433101
Q gi|254780793|r 305 KSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMK 384 (518)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~ 384 (518)
+.++..++++....+++++..+....+++|++.++-. ++|-.+.+..++++...+.++..+.....+.+++.||+|
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~----~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 166 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA----PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTK 166 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999999999999999999969999998599----767999999999999999999999999999998589914
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHH
Q ss_conf 34677788868999998752021----120049999999999999999999997115---------78898899999999
Q gi|254780793|r 385 APMKFTIVSIAINLTIAIGSFPF----IGGYGIALAEVSSSWVNTICLAITLLKRKQ---------INLPFKTIYRILSV 451 (518)
Q Consensus 385 ~~~~~~~~~~~vni~l~~~li~~----~G~~G~a~at~i~~~~~~~~~~~~l~k~~~---------~~~~~~~~~~~~~~ 451 (518)
.|++.++.+.++|+++|++++.- +|+.|+|+||.++.++.+....++++|+.+ .+.+++.++++++.
T Consensus 167 ~~m~~~~~~~~lNi~Ln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 246 (455)
T COG0534 167 TPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRL 246 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 87999999999999997999995131212220999999999999999999999634300355420147999999999996
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780793|r 452 SISAGLMGFFIILFRP 467 (518)
Q Consensus 452 ~~~~~im~~~~~~~~~ 467 (518)
..++.++.........
T Consensus 247 G~p~~~~~~~~~~~~~ 262 (455)
T COG0534 247 GLPIFLESLSESLGFL 262 (455)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 6469999999999999
No 17
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.97 E-value=1.7e-28 Score=166.89 Aligned_cols=238 Identities=14% Similarity=0.125 Sum_probs=196.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7543241000134688876432012023332025565--56630577775332110000001112322100234444332
Q gi|254780793|r 224 PRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASR--ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSK 301 (518)
Q Consensus 224 ~~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~--~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~ 301 (518)
....+..|.++++++|.++++..+.++..+|+++.+. ++.+.++.+.+..+..+..++ +..++...-..+||..++|
T Consensus 8 ~~~~~I~k~~~~laiP~i~~~l~~~ly~ivD~~fvG~~~G~~alAAv~~~~pi~~~~~~~-~~~lg~G~~~lis~~~G~~ 86 (456)
T PRK09575 8 QMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGI-GLMVGMGTGSLLSIYRGEG 86 (456)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC
T ss_conf 048988999999999999999999999999999944726898999999999999999999-9999999999999997699
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHH
Q ss_conf 23678999897541134421589999985257231112104786445545666655542010567753123202354433
Q gi|254780793|r 302 NKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQN 381 (518)
Q Consensus 302 d~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g 381 (518)
|+|+.++...+++.....+++..++....+++|++.+ ++ . ++|-.+.+..++++..++.++..+.......+++.|
T Consensus 87 ~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~-lg--a-~~~v~~~a~~Yl~i~~~g~~~~~~~~~~~~~lra~G 162 (456)
T PRK09575 87 DLQKAKTILTTGLLLLLLLGPIVSIILWLFADDFLLA-QG--A-EGRTLELGLQYIQVLTWGCLFTIGAIALPMLVRNDE 162 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999999999988-39--7-899999999999999998899999999999998289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHH
Q ss_conf 101346777888689999987520--2112004999999999999999999999711--------578898899999999
Q gi|254780793|r 382 DMKAPMKFTIVSIAINLTIAIGSF--PFIGGYGIALAEVSSSWVNTICLAITLLKRK--------QINLPFKTIYRILSV 451 (518)
Q Consensus 382 ~~~~~~~~~~~~~~vni~l~~~li--~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~--------~~~~~~~~~~~~~~~ 451 (518)
|+|.|++..+++.++|+++|++++ +.+|+.|+|+||.+++.+.+.+..+++.|+. ..+.+++..+++.+.
T Consensus 163 ~~~~~~~~~i~~~i~NiiLd~lfI~~~~lGv~GAAlATvisq~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~i~~i 242 (456)
T PRK09575 163 SPNLATGLMVLGALINIVLDYLFIGVLDWGLTGAAIATALAQLVVTILGLGYFFSSRANIKLSLKELLFNWSLAPQIVLL 242 (456)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHHHHHHHHH
T ss_conf 98305899999778899899999720899864499999999999999999999906861475376311569999999998
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780793|r 452 SISAGLMGFFIILFR 466 (518)
Q Consensus 452 ~~~~~im~~~~~~~~ 466 (518)
..++.++........
T Consensus 243 G~p~~i~~~~~s~~~ 257 (456)
T PRK09575 243 GSSSFFMYLYGSFVV 257 (456)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 479999999999999
No 18
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.96 E-value=2.6e-27 Score=160.64 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=197.1
Q ss_pred HHHHHHHHCCCHHHHHCCCCCC-CCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876432012023332025565-56630577775-332110000001112322100234444332236789998975411
Q gi|254780793|r 239 PLMVTGGIIQISNIVGRAIASR-ETGIISAIQYA-ERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 239 p~~l~~~~~~i~~~i~~~~as~-~~g~vs~~~~a-~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
|.++++...++..++|+.+.++ ++-..++...+ ..+..... .+...+++..-|.+||.+++||+++.++..++++-.
T Consensus 1 P~~~~~~~q~~~~l~D~~~vG~lg~~~Laav~~g~~~~~~~~~-~~~~gl~~a~~~~~aq~~Ga~~~~~~~~~~~~~~~l 79 (412)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVGLGISSVFMLLI-SILLGLGTATTALVAQAVGAGNRQRLGRQAQQSLLL 79 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9178999998887986630023118999999999999999999-999999988999999988332489999999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34421589999985257231112104786445545666655542010567753123202354433101346777888689
Q gi|254780793|r 317 ISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAI 396 (518)
Q Consensus 317 ~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~v 396 (518)
..++++|.++..+...++++++ .+ -+++-.+.+..++++..++.|.+.+.....+.+++.+|||.|+++++++.++
T Consensus 80 a~~lg~~~~~~~~~~~~~l~~~-~~---~~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~~~~ 155 (412)
T TIGR00797 80 ALLLGLPVLLVGLFFIDPLLSL-MG---ADGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIGNLL 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999888889984-17---9888999899989999999999999999999974542258999999999999
Q ss_pred HHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999875202------11200499999999999999999999971-----------157889889999999999999999
Q gi|254780793|r 397 NLTIAIGSFP------FIGGYGIALAEVSSSWVNTICLAITLLKR-----------KQINLPFKTIYRILSVSISAGLMG 459 (518)
Q Consensus 397 ni~l~~~li~------~~G~~G~a~at~i~~~~~~~~~~~~l~k~-----------~~~~~~~~~~~~~~~~~~~~~im~ 459 (518)
|++||++|+. .+|+.|+|+||.+++++.+.++.++.+|. ...+.+++..++.+|...+..++-
T Consensus 156 Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~ 235 (412)
T TIGR00797 156 NIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLLKLGLPIALRV 235 (412)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99983898717888712477766899999999999999999997121243212244433025899999998708999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999998655310002
Q gi|254780793|r 460 FFIILFRPYFNQFSSATT 477 (518)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~ 477 (518)
.................+
T Consensus 236 ~~~~~~~~~~~~~~~~~G 253 (412)
T TIGR00797 236 ILESLSFALVALLVARLG 253 (412)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999987316
No 19
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.95 E-value=2.6e-26 Score=155.38 Aligned_cols=233 Identities=12% Similarity=0.108 Sum_probs=190.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4324100013468887643201202333202556-556630577775332110000001112322100234444332236
Q gi|254780793|r 226 LTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQ 304 (518)
Q Consensus 226 ~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~ 304 (518)
...++|+++++++|.++++...+....+|+.+.+ .++.+.++...+..+..+... +...+++..-+..||.+++||++
T Consensus 5 ~~~ElK~ll~La~Pi~~~~l~~~l~~~vD~~~vG~lg~~alAav~~~~~~~~~~~~-~~~g~~~g~~~lvaq~~Ga~~~~ 83 (462)
T PRK00187 5 PTTELKALLRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSI-FCVGVIAAVGTLVAIRHGAGDIE 83 (462)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 51999999999999999999999999999999875589999999999999999999-99999999999999997799989
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78999897541134421589999985257231112104786445545666655542010567753123202354433101
Q gi|254780793|r 305 KSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMK 384 (518)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~ 384 (518)
+.++..++++.....++++.++.++. .+|+... ++ -++|..+.+.+++++..++++++.......+.+++.||+|
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~il~~-~g---~~~~~~~~a~~Yl~i~~~~~~~~~~~~~~~~~l~~~g~~~ 158 (462)
T PRK00187 84 GATRLAQSGLWLAWLLALVAALLLWN-LEPLLLL-FG---QAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAG 158 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999999999999999999-9999998-69---8999999999999999999999999999999998679971
Q ss_pred HHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHH
Q ss_conf 346777888689999987520------2112004999999999999999999999711----------578898899999
Q gi|254780793|r 385 APMKFTIVSIAINLTIAIGSF------PFIGGYGIALAEVSSSWVNTICLAITLLKRK----------QINLPFKTIYRI 448 (518)
Q Consensus 385 ~~~~~~~~~~~vni~l~~~li------~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~----------~~~~~~~~~~~~ 448 (518)
.|++.++.+.++|+++|+.++ |.+|+.|+++||.++.........++.+++. ..+.+++.++++
T Consensus 159 ~~~~~~~~~~v~Ni~Ln~~lI~g~~g~p~lGv~Gaa~at~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 238 (462)
T PRK00187 159 PVMVISLAGAVANLALNYALIEGWFGLPKLGLMGIGLVTALVSNCMALALALYIRRHPAYAAYPLRKGLSRPSRAALREL 238 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHH
T ss_conf 69999999999999999888614456553216898899999999999999999999055230110331245779999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780793|r 449 LSVSISAGLMGFFIIL 464 (518)
Q Consensus 449 ~~~~~~~~im~~~~~~ 464 (518)
+|..++++++...-..
T Consensus 239 l~ig~P~~~~~~~~~~ 254 (462)
T PRK00187 239 WRLGLPIGGTYAVEVG 254 (462)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998679999999999
No 20
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.95 E-value=4.2e-26 Score=154.28 Aligned_cols=229 Identities=14% Similarity=0.115 Sum_probs=181.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 241000134688876432012023332025565566--305777753321100000011123221002344443322367
Q gi|254780793|r 228 HNVKFFLKLTFPLMVTGGIIQISNIVGRAIASRETG--IISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK 305 (518)
Q Consensus 228 ~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~~~g--~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~ 305 (518)
.+-|+++++++|.++++...++..++|+.+.+...+ +.++...+..+..+...++ ..++...-+.+||++++||+++
T Consensus 6 ~~~K~l~~LA~P~i~~~l~~~l~~lvDt~~vG~lg~~~~lAav~~~~~~~~~~~~~~-~~l~~g~~~lvAq~~Ga~~~~~ 84 (439)
T PRK10367 6 SSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLL-LFLRMSTTGLTAQAYGAKNPQA 84 (439)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHH
T ss_conf 787139999999999999999999999999618887699999999999999999999-9999999999999980899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 89998975411344215899999852572311121047864455456666555420105677531232023544331013
Q gi|254780793|r 306 SFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKA 385 (518)
Q Consensus 306 ~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~ 385 (518)
.++...+++.....++++.++....+.+++..++ + -+++-.+.+.+++++...++|+..+.......+++.||+|.
T Consensus 85 ~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~l~~~-g---~~~~v~~~a~~Yl~i~~~g~p~~~~~~~~~~~lrg~g~t~~ 160 (439)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPIIDLALHIV-G---GSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA 160 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999999999999999999999980-9---98666999999999999998999999999999987787088
Q ss_pred HHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCH-HHHHHHHHHHHH
Q ss_conf 467778886899999875202--11200499999999999999999999971157--------8898-899999999999
Q gi|254780793|r 386 PMKFTIVSIAINLTIAIGSFP--FIGGYGIALAEVSSSWVNTICLAITLLKRKQI--------NLPF-KTIYRILSVSIS 454 (518)
Q Consensus 386 ~~~~~~~~~~vni~l~~~li~--~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~--------~~~~-~~~~~~~~~~~~ 454 (518)
|++...++.++|+++|++++. .+|+.|+|+||++++++.+.+..+..+|+.+. +.++ ...+++++...+
T Consensus 161 pm~~~~~~~vlNiiLd~~fI~g~~lGv~GAA~AT~is~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~p 240 (439)
T PRK10367 161 PVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISGEMLKTAWRGNFRRLLALNRD 240 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999999999999999870763289999999999999999999999986030156776314149999999983563
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780793|r 455 AGLMGFF 461 (518)
Q Consensus 455 ~~im~~~ 461 (518)
..+....
T Consensus 241 ~~~~~~~ 247 (439)
T PRK10367 241 IMLRSLL 247 (439)
T ss_pred HHHHHHH
T ss_conf 9999999
No 21
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=99.89 E-value=6e-22 Score=132.39 Aligned_cols=269 Identities=13% Similarity=0.186 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 36889999999999999999999999999577757899999999789999999757789999999999984489789999
Q gi|254780793|r 3 IIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQR 82 (518)
Q Consensus 3 ~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~ 82 (518)
++||+.++.++++++++.|++..+.++|.+|+++.+ .|..++++..++..+...| ++.++++..+++++ |+.++
T Consensus 1 llkn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG-~~~l~~~~~~~~~~~~~lG-~~~a~~r~~~~~~~----~~~~~ 74 (272)
T pfam01943 1 LLKNALVLLLAQLISKLLPFVTLPYLARVLGPEGFG-LYSFALAIVGLFVIFADLG-LNAALVREIARYRD----DEKSS 74 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC----HHHHH
T ss_conf 906889999999999999999999999994999868-9999999999999999873-25999999875230----88889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999996534344457887541011112456554443321246888765688998842227999
Q gi|254780793|r 83 LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIAS 162 (518)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a 162 (518)
.. .........+..+.....+.+..+...| +. ...+..+.....+........+++++++++++..+
T Consensus 75 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (272)
T pfam01943 75 KY----ISNVLLGKLLLSLIFLLILLIAAFLGLP-----DL----AVILLILALAILLLPGVSQFFSWLFQGLEKMKYIA 141 (272)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99----9999999999999999999999998784-----37----99999999999999999999999999999899999
Q ss_pred HHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99985401034677776235686544320001221110111000231012103654445677543241000134688876
Q gi|254780793|r 163 IAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMV 242 (518)
Q Consensus 163 ~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~l 242 (518)
..++..++.............. +..+..++...+.++.........++...+ ......++..|++++.+.|..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~l~~~~p~~~ 215 (272)
T pfam01943 142 ISMIIEKLGSLILVFIAVFLGL----DLLAAVLILLIASLIGGIIALAVLRKKFLP--RFVFFSLKLFKELLRFSWPLFL 215 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999715----699999999999999999999999998535--6467889999999988789999
Q ss_pred HHHHCCCHHHHHCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 432012023332025565--5663057777533211000000111232210023444
Q gi|254780793|r 243 TGGIIQISNIVGRAIASR--ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRS 297 (518)
Q Consensus 243 ~~~~~~i~~~i~~~~as~--~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~ 297 (518)
++....++...|+.+.+. ++..++.|+.|.++.+.+..+ ..+++++.+|++||.
T Consensus 216 ~~~~~~l~~~~d~~il~~~~~~~~vG~Ys~a~~l~~~~~~l-~~~~~~~l~P~~s~l 271 (272)
T pfam01943 216 SSLAISLYTYIDTVMLGLMLGAYAVGIYSAAYKLLVILLSL-IASIVTVLFPRFSKL 271 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
T ss_conf 99999999999999999878999952699999999999999-999999999998648
No 22
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=99.78 E-value=7.6e-17 Score=105.45 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 68899999999999999999999999995777578999999997899999997577899999999999844897899999
Q gi|254780793|r 4 IRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRL 83 (518)
Q Consensus 4 ~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~ 83 (518)
.|-......+.....+-.++ |..+|..++.+..+ +++.|.++..+...+++. ++++++.|.++|..+++|+|+.++.
T Consensus 201 ~~l~~P~~l~~~~~qin~lv-d~~~AS~l~~G~vs-~l~yA~rl~~lP~gi~~v-ai~tv~~P~lS~~~~~~d~~~~~~~ 277 (452)
T pfam03023 201 LALALPTLLGVSVSQLNLLI-DTALASFLAEGSIS-YLYYADRIYQLPLGIFGV-SVSTVLLPRLSRHAKDGDWDEFLDL 277 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999999999999-99998735432799-999998887878999998-5599888999999876899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999999999999999965343444578875410111124565544433212468887656889988422279999
Q gi|254780793|r 84 SSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASI 163 (518)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~ 163 (518)
.++.+..........++.....++++++.++..|--+++ .-..+...++..++.+++.++..+....+++++|.+.|..
T Consensus 278 l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG~F~~~-~~~~ta~~L~~y~~gl~~~~l~~il~r~fyA~~dtktP~~ 356 (452)
T pfam03023 278 LDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERGAFSPE-DVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTKTPFK 356 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999999999999999789999999804899999-9999999999999988999999999988586578588999
Q ss_pred HHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 99854010346777762356865443200012211101110002310121036
Q gi|254780793|r 164 APIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG 216 (518)
Q Consensus 164 ~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 216 (518)
..++..+.++...... .+..+..+++.++.++..++..+++..++|+.
T Consensus 357 ~s~i~~~~ni~l~~~l-----~~~~g~~GlAlatsis~~v~~~ll~~~l~k~~ 404 (452)
T pfam03023 357 ISLISAVLNILLSLLL-----LPPLGVVGLALATSLSAWINLVFLYYILRKRL 404 (452)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999-----99999999999999999999999999999865
No 23
>pfam01554 MatE MatE. The MatE domain
Probab=99.78 E-value=1.3e-19 Score=120.01 Aligned_cols=160 Identities=16% Similarity=0.246 Sum_probs=139.6
Q ss_pred HHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 887643201202333202556-5566305777753321100000011123221002344443322367899989754113
Q gi|254780793|r 239 PLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECI 317 (518)
Q Consensus 239 p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~ 317 (518)
|.++++...++...+|+.+.+ +++.++++.+.+.++.++.. .+..+++++.-|.++|++++||+|+.++..++++...
T Consensus 1 P~~l~~~~~~~~~~vd~~~vg~lG~~~lAa~~i~~~i~~~~~-~~~~g~~~a~~~~vs~~~Ga~~~~~~~~~~~~~~~~~ 79 (161)
T pfam01554 1 PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLIF-MFLLGLSTALTTLVGQALGAGNFKRAGVALRQGLILS 79 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 988899999999999999999749999999999999999999-9999999999999999868875999999999999999
Q ss_pred CCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44215899999852572311121047864455456666555420105677531232023544331013467778886899
Q gi|254780793|r 318 SFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAIN 397 (518)
Q Consensus 318 ~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vn 397 (518)
..++++..+.+..+++++..+ |+ -|++-.+.+...+.+.+++.++..+.......+++.||+|.|++.++++.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~-~~---~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~n 155 (161)
T pfam01554 80 LLISLPIALLIILFREPILSL-FT---QDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLN 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999889999999-79---78999999999999999999999999999999988996599999999999999
Q ss_pred HHHHHH
Q ss_conf 999875
Q gi|254780793|r 398 LTIAIG 403 (518)
Q Consensus 398 i~l~~~ 403 (518)
+++||+
T Consensus 156 i~l~yl 161 (161)
T pfam01554 156 IPLNYL 161 (161)
T ss_pred HHHHHC
T ss_conf 998429
No 24
>pfam04506 Rft-1 Rft protein.
Probab=99.67 E-value=2.9e-13 Score=86.53 Aligned_cols=269 Identities=11% Similarity=0.039 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHCCCC------CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf 0001346888764320120233320255------65566305777753321100000011123221002344443-----
Q gi|254780793|r 231 KFFLKLTFPLMVTGGIIQISNIVGRAIA------SRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLR----- 299 (518)
Q Consensus 231 k~~l~~~~p~~l~~~~~~i~~~i~~~~a------s~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~----- 299 (518)
++.++........+..=|+-+-=|+++. +.++ .+.|..++++-++.--++-.++--..+-..||...
T Consensus 238 ~~ll~l~~sf~~Qsi~K~iLTEGdk~Vls~~~l~t~~d--QGvY~lvsN~GSLvAR~vFqPIEEss~~~Fsk~l~~~~~~ 315 (533)
T pfam04506 238 RDSLHAVFSMFSQSILKQLLTEGDKYVMTFTELLSLKE--QAVYDLVSNYGSLLARTIFRPIEESSNAYFAQTLSKENKK 315 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHH--HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999999999998445620453030278876--2389998610017688871618888999999985456653
Q ss_pred ----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCH
Q ss_conf ----3223678999897541134421589999985257231112104786445545666655542010567753123202
Q gi|254780793|r 300 ----SKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLST 375 (518)
Q Consensus 300 ----~~d~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~ 375 (518)
++|.++..+.+...+|....+++.+.+....+++.++.+++|+ +.+.++ ...+|++|+..+|+.+++.+.-.
T Consensus 316 ~~~~~~~~~~a~~~L~~llk~~~~igL~i~~FGp~ys~~lL~ll~G~-~ws~~~---~~~lL~~Yc~YIp~LAiNGItEA 391 (533)
T pfam04506 316 FNKNTDNHKDAVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLYGGS-KWSENG---GASLLSWYCGYIPFLAINGITEG 391 (533)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC-CCCCCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34443679999999999999999999999981710089999996776-565787---78999999999999997009999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HH
Q ss_conf 3544331013467778---88689999987520211200499999999999999999999971157889889999---99
Q gi|254780793|r 376 AFYAQNDMKAPMKFTI---VSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYR---IL 449 (518)
Q Consensus 376 ~~~a~g~~~~~~~~~~---~~~~vni~l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~~~---~~ 449 (518)
..+|..+.+..-+.+. .-.++.+..+++++..+|..|.-+|+.+-..+......++++|..+.......... ..
T Consensus 392 F~~avat~~el~~~n~~M~~fS~~fl~~sy~l~~~lG~~GlI~AN~iNM~lRI~ys~~fI~~yf~~~~~~~~~~~~~~~~ 471 (533)
T pfam04506 392 FAMASATSRQIFKHGKFMFAFSVIFLIISYVLCVYLGSAGFILANIINMSLRILYNWRFIRHYYRDLSLDFSLVLPFGQT 471 (533)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 99995799999999999999999999999999987072289999998899999999999999834368775435576309
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 99-999999999999999986553100027999999999999999999999999600789999997526
Q gi|254780793|r 450 SV-SISAGLMGFFIILFRPYFNQFSSATTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIR 517 (518)
Q Consensus 450 ~~-~~~~~im~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vY~~~l~l~~~~~~~~~l~~~~r 517 (518)
+. .+.+.+.....+ .++.... .+....+.+.+|..+ .+......++.++.-..+++
T Consensus 472 ~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~h~~~g~~c--l~~~~~~~~~~~~~f~~~~~ 528 (533)
T pfam04506 472 KIFLGVSLLATLVTY---WLFSTVP-------GLSYFLVHVLIGAVC--LILIALDTRQHDSVFTVIVD 528 (533)
T ss_pred HHHHHHHHHHHHHHH---HHEECCC-------CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998887---3101367-------589989999999999--99999999986214898887
No 25
>KOG2864 consensus
Probab=99.66 E-value=1.3e-12 Score=83.18 Aligned_cols=417 Identities=13% Similarity=0.043 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 91368899999999999999999999999995777578999999997899999997577899999999999844897899
Q gi|254780793|r 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESA 80 (518)
Q Consensus 1 m~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~ 80 (518)
||-.+++.-.+.+-+++|++-|+-..++-|..+.+..+ .-|+-+.+-..=...++-.++.-|-+| .+.++.|.-
T Consensus 8 ~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~g-i~nvrl~lL~sTiLFlsREair~A~l~-----~gs~~~d~~ 81 (530)
T KOG2864 8 ESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLG-IVNVRLELLQSTILFLSREAIRLAELR-----IGSEPADTW 81 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEE-HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCH
T ss_conf 98873117899999999999999999999971863601-158999999887988518888888643-----889887639
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999999999965343444578875410111124565544433212468887656889988422279
Q gi|254780793|r 81 QRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFI 160 (518)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~ 160 (518)
.++.+. .+.......+..+....+ +..+...++.....+.+..++.. ...+...--++.-+.-..|.+.++..
T Consensus 82 te~~n~-~wlS~~L~~~i~~~~i~~---wl~~~~s~d~i~~~p~y~~~I~~---~~~S~vvELlsEp~~iv~Q~~~~~~~ 154 (530)
T KOG2864 82 TEFINL-LWLSVPLQTAINVACIYF---WLGFLSSSDEISYSPLYAFAIFI---IGLSIVVELLSEPLYIVSQCGLKVQL 154 (530)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHCCCHHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999875-431235789999999999---99876423303127557678999---99999999961439999999999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHC-CCCCHHHCCCCC-------------CCCCCCCC
Q ss_conf 9999985401034677776235686544320001221110111000-231012103654-------------44567754
Q gi|254780793|r 161 ASIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFW-IVYCCAKNDGVK-------------LRFQYPRL 226 (518)
Q Consensus 161 ~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~ 226 (518)
.++.+-+.-++.-... ++.........+...-|.|.+...+.-++ +.+.+.+..+-+ ++...+..
T Consensus 155 ~~i~e~l~~~v~~i~~-fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~ 233 (530)
T KOG2864 155 RAIAEGLATIVKCIVL-FAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENER 233 (530)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 9998689999999999-999986486168799999999766799999999999975875233422456665247889976
Q ss_pred CCC-CCHHHHHHHHHHHHHHHCCCHHHHHCCCC------CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf 324-10001346888764320120233320255------6556630577775332110000001112322100234444-
Q gi|254780793|r 227 THN-VKFFLKLTFPLMVTGGIIQISNIVGRAIA------SRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSL- 298 (518)
Q Consensus 227 ~~~-~k~~l~~~~p~~l~~~~~~i~~~i~~~~a------s~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~- 298 (518)
... -++..+........+..-|+-+==|+++. |.++.+ .|...++.-++..-++-.++--..+--.+|..
T Consensus 234 ~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Qg--vYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls 311 (530)
T KOG2864 234 GIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQG--VYDLVSNYGSLLARLIFRPIEESSYIYFARLLS 311 (530)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 522257899999999999999999631651168620247731103--898887452399999717057778999999960
Q ss_pred --HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHH
Q ss_conf --332236789998975411344215899999852572311121047864455456666555420105677531232023
Q gi|254780793|r 299 --RSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTA 376 (518)
Q Consensus 299 --~~~d~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~ 376 (518)
.++|.++..+.+...++....+++.++......+++.+. +|++..++..+. ...+++||..+++.+++.+.-..
T Consensus 312 ~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~-lygG~kwss~~~---~~lL~~YclYI~~lAiNGitEaF 387 (530)
T KOG2864 312 RDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLL-LYGGSKWSSGGG---SLLLSWYCLYIPFLAINGITEAF 387 (530)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHCCCCCCCCCC---HHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 23545589999999999999999998982007641289999-975753468984---39999999999999960388999
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 54433101346777---88868999998752021120049999999999999999999997115
Q gi|254780793|r 377 FYAQNDMKAPMKFT---IVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQ 437 (518)
Q Consensus 377 ~~a~g~~~~~~~~~---~~~~~vni~l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~ 437 (518)
++|..+.+...+.+ .+..+..+++|++|+..+|..|.-+|+.+..-+......+.+++..+
T Consensus 388 ~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr 451 (530)
T KOG2864 388 AFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYR 451 (530)
T ss_pred HHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9996337778761532269999999999999999552279999888899999999999999833
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=99.60 E-value=4.8e-13 Score=85.39 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 68899999999999999999999999995777578999999997899999997577899999999999844897899999
Q gi|254780793|r 4 IRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRL 83 (518)
Q Consensus 4 ~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~ 83 (518)
.+-...++..++++.+..-..+..+.+++|+++.+ .|+.|+++.........+ +++.+.-|.+++. ++|+|+.++.
T Consensus 210 ~~Fg~~l~~~~l~~~i~~n~d~liiG~~~g~~~lG-~Y~~A~~l~~~p~~~i~~-~i~~V~~P~~s~~--q~d~~~l~~~ 285 (492)
T PRK10459 210 LSFGAFQTADRIINYLNTNIDTILIGRILGAEVLG-GYNLAYNVATVPPLKINP-IITRVAFPVFAKI--QDDTEKLRVG 285 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HCCHHHHHHH
T ss_conf 98879999999999999985999999972898865-999999999999999999-9987799999998--3568999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999999999999999965343444578875410111124565544433212468887656889988422279999
Q gi|254780793|r 84 SSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASI 163 (518)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~ 163 (518)
..+.......+...+.......+|+++..++++ +..-++..++++++...+.++......++++++|-.....
T Consensus 286 ~~~~~~~~~~i~~P~~~gla~~A~~~V~llfG~-------kW~~av~~l~iL~l~~~~~~~~~~~~~ll~a~Gr~~~~~~ 358 (492)
T PRK10459 286 FLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGE-------KWNSAIPVLQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 999999999999999999999879999996072-------0776899999999999999999999999985597446999
Q ss_pred HHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 998540103467777623568654432000122111011100023101210
Q gi|254780793|r 164 APIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKN 214 (518)
Q Consensus 164 ~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~ 214 (518)
.+++.....+...... ...+|..+.+++.++..++.+........|
T Consensus 359 ~~~~~~~i~~~~i~~~-----~~~~G~~gva~~~~~~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIG-----GQLAGLIGVALGFLLVSIINTILGYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999-----987159999999999999999999999999
No 27
>pfam01554 MatE MatE. The MatE domain
Probab=99.59 E-value=2.8e-13 Score=86.58 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999999995777578999999997899999997577899999999999844897899999999999
Q gi|254780793|r 10 VCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIFS 89 (518)
Q Consensus 10 ~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~~ 89 (518)
.++..+..-+.+++....+++ +|+++ ..|+.++.++.+++.... . +++.+..+..++..+++|+|++++..++.+.
T Consensus 2 ~~l~~~~~~~~~~vd~~~vg~-lG~~~-lAa~~i~~~i~~~~~~~~-~-g~~~a~~~~vs~~~Ga~~~~~~~~~~~~~~~ 77 (161)
T pfam01554 2 IILENLLQSLYSLIDTLFVGH-LGAVA-LAAVSIANSIASLIFMFL-L-GLSTALTTLVGQALGAGNFKRAGVALRQGLI 77 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCHHH-HHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 888999999999999999997-49999-999999999999999999-9-9999999999998688759999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99999999999999965343444578875410111124565544433212468887656889988422279999998540
Q gi|254780793|r 90 ILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVIN 169 (518)
Q Consensus 90 ~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~vi~n 169 (518)
.....+.++.++.+.+.+++.... .+|++..+.+.+++++..+..++.++.....+++|+.+|.+.+....++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~ 152 (161)
T pfam01554 78 LSLLISLPIALLIILFREPILSLF-----TQDEEVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLISL 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999998899999997-----978999999999999999999999999999999988996599999999999
Q ss_pred CHHHH
Q ss_conf 10346
Q gi|254780793|r 170 VFPIF 174 (518)
Q Consensus 170 i~~i~ 174 (518)
+.++.
T Consensus 153 ~~ni~ 157 (161)
T pfam01554 153 LLNIP 157 (161)
T ss_pred HHHHH
T ss_conf 99999
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.57 E-value=1.3e-12 Score=83.04 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999999999999995777578999999997899999997577899999999999844897899999999
Q gi|254780793|r 7 FLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSE 86 (518)
Q Consensus 7 ~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~ 86 (518)
......++-.|. +..+.+..+|+.+..+..+ .++.|.++..+...+++- ++++++.|..+|..+++|+++.++..++
T Consensus 238 ~~p~~l~~sisQ-i~lli~~~iAS~l~~Gsis-~l~YA~rl~qlPlGifgv-ai~tvllP~lSr~~~~~~~~~~~~~l~~ 314 (518)
T COG0728 238 MLPALLGVSISQ-INLLIDTAIASFLAEGSVS-WLYYADRLYQLPLGIFGV-ALSTVLLPSLSRHAANGDWPEFLKLLDW 314 (518)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999-9999999999860135099-999999999715899999-9999987999997506765989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999999999999965343444578875410111124565544433212468887656889988422279999998
Q gi|254780793|r 87 IFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPI 166 (518)
Q Consensus 87 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~v 166 (518)
.+....+.+...+.....+++++++.++..|--++++ -..+.+.++.....+++..+..++.-.+++++|-+.|....+
T Consensus 315 ~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d-~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~i 393 (518)
T COG0728 315 GLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAED-VLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAI 393 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9999999999999999998999999995358998577-999999999998744899999999999998038773769999
Q ss_pred HHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 540103467777623568654432000122111011100023101210365
Q gi|254780793|r 167 VINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGV 217 (518)
Q Consensus 167 i~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 217 (518)
+.-+.++....+.. +..+..+.+.++.+++.++..+.+...+|++.
T Consensus 394 i~~~~n~~l~~~l~-----~~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 394 ISLVVNILLNLLLI-----PPLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred HHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999978-----61352299999999999999999999998437
No 29
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.56 E-value=1.2e-12 Score=83.32 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13468887643201202333202556--5566305777753321100000011123221002344443322367899989
Q gi|254780793|r 234 LKLTFPLMVTGGIIQISNIVGRAIAS--RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQN 311 (518)
Q Consensus 234 l~~~~p~~l~~~~~~i~~~i~~~~as--~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~ 311 (518)
+|-++=.+.++..+.+-.++.|.+.+ +|+.+++.|+-+..++.+...+....+..+.==..|++.++||+++.+|.++
T Consensus 2 lkg~fiL~~a~~iTr~LGFifri~ls~~LGaEGvGLY~l~~P~y~L~itL~~~Gl~~AISk~~Ae~~a~~D~~n~~kil~ 81 (493)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGLAMPIYFLFITLTTGGLPVAISKFVAEASAKNDKKNIKKILK 81 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 04899999998884677898899886542366311788899999999999865399999999999871377446689999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 75411344215899999852572311121047864455456666555420105677531232023544331013467778
Q gi|254780793|r 312 QAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTI 391 (518)
Q Consensus 312 ~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~ 391 (518)
-+.-.....++-.+..++++++-+-+.+.. | ..+-..+.+.+|.+|+-+++.++...||+..|.|.|..+-+
T Consensus 82 ~S~~f~~~~s~~v~~~~f~~~p~Ia~~ll~-------D-~R~~~~l~~i~P~~~~iA~SsvLkGYFqG~~~~~~~A~~qv 153 (493)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLAPFIASTLLK-------D-ERSLYSLLVICPAVPIIALSSVLKGYFQGISNMKPPAYIQV 153 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999999999999999999998999985167-------6-07899999983289999998888887553550546789999
Q ss_pred HHHHHHHHHHHHHCCCC---C----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CHH-HHHHHHHHHH
Q ss_conf 88689999987520211---2----0049999999999999999999997115788----------988-9999999999
Q gi|254780793|r 392 VSIAINLTIAIGSFPFI---G----GYGIALAEVSSSWVNTICLAITLLKRKQINL----------PFK-TIYRILSVSI 453 (518)
Q Consensus 392 ~~~~vni~l~~~li~~~---G----~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~----------~~~-~~~~~~~~~~ 453 (518)
+.-++++.+-..++.-| | +.|+-++-+++|.++.+.++...+|+...+. +++ .+.+..-.++
T Consensus 154 ~Eq~vRI~~~~~li~~F~~~~~e~ava~A~~~~~lGE~~SLl~l~~~f~~~~~~~~r~~~~~~~~egk~q~l~~l~~~S~ 233 (493)
T TIGR02900 154 IEQIVRISVVALLISLFLPYGVEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSISIRKPFFDYKSEGKAQLLFDLLSVSL 233 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999988413688999999999999999999999999888600253156345553328999999999986
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780793|r 454 SAGLMGFFIILFR 466 (518)
Q Consensus 454 ~~~im~~~~~~~~ 466 (518)
|.+.-+.....+.
T Consensus 234 P~t~srf~~s~l~ 246 (493)
T TIGR02900 234 PLTLSRFIGSLLY 246 (493)
T ss_pred HHHHHHHHHHHHH
T ss_conf 4888899999999
No 30
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=99.52 E-value=1.9e-12 Score=82.29 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 1368899999999999999999999---9999957775789999999978999999975778999999999998448978
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRET---LVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSE 78 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~---~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~ 78 (518)
+++|.......+.-.+.+.-++ +. .+|..+-.|..+ ++..|..+..+...+++- ++++++-|.++|...++|++
T Consensus 245 ~~l~~~~p~~lg~s~~q~~~l~-~t~L~~~AS~l~~Gs~s-~~~yA~r~~~LP~gif~v-sl~~v~lP~~s~~~~~~~~~ 321 (538)
T TIGR01695 245 RFLKLMLPTTLGVSASQITLLI-NTRLLALASFLEIGSVS-ALYYASRLYQLPLGIFGV-SLATVLLPKLSKHASEGNWN 321 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999999999999-99999873155268999-999999999989999999-99999999999885026868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999999999999999999653434445788754101111245655444332124688876568899884222
Q gi|254780793|r 79 SAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRY 158 (518)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f 158 (518)
|.++..++.+....+.....+......++++++.++..|--++ +....+.+.+......+++.++..++.-.+.+++|-
T Consensus 322 ~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g~F~~-~~~~~ta~~L~~y~lGl~~~~l~~vL~~~fYA~~d~ 400 (538)
T TIGR01695 322 ELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERGAFSE-EDALMTATILAAYALGLIFYSLQKVLLRAFYARKDT 400 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999988999998853788888-899999999999999899999999998778755302
Q ss_pred HHHHHHHHHHHCHHHHHH----HHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 799999985401034677----7762356865443200012211101110002310121036
Q gi|254780793|r 159 FIASIAPIVINVFPIFAL----TYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG 216 (518)
Q Consensus 159 ~~~a~~~vi~ni~~i~~~----~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 216 (518)
+.|....++.-+.++... ... ....+..+.+.++.++..++....+...+|..
T Consensus 401 ~tP~~~~~~~~~~n~~l~GlCy~~l-----~~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~ 457 (538)
T TIGR01695 401 KTPFIVSVISVVLNVLLSGLCYLLL-----IFPLGLSGIALATSLAAIVSAVLLYLRLKKRL 457 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0489999999999999988999988-----88873689999999999999999999986520
No 31
>KOG1347 consensus
Probab=99.47 E-value=5.8e-14 Score=90.24 Aligned_cols=409 Identities=14% Similarity=0.054 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 36889999999999999999999999999577757899999999789999999757789999999999984489789999
Q gi|254780793|r 3 IIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQR 82 (518)
Q Consensus 3 ~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~ 82 (518)
+.+-+.......+..-....+ ++..+-+.|.. +.++..++.+..+..-.-... .+..++-|...+..+.++.+....
T Consensus 30 l~~ia~P~i~~~~~~~~~~~i-s~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~-gl~~aletlcgQa~ga~~~~~lg~ 106 (473)
T KOG1347 30 LARLALPAILTFLAQPLLSLV-STAFAGHLGNL-ELASVSLANSFANITGVSILL-GLQLALDTLCGQAFGAKKFTALGV 106 (473)
T ss_pred HHHHHCCHHHHHHHHHHHHHH-HHHHCCCCCCH-HHHHHHHHHHHCCCCCCCHHH-CCHHHHCCCCHHHCCCCHHHHHHH
T ss_conf 998613199999998877788-88640166740-233466665322443402342-410313021045418621223388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999996534344457887541011112456554443321246888765688998842227999
Q gi|254780793|r 83 LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIAS 162 (518)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a 162 (518)
...+....+... .+.....+.+.+++...+ .++++....+-.+.+.+.|.++-.....-...++|+.++..+..
T Consensus 107 ~lqrs~~~l~~~-~~~~~~l~~~~~~il~~l-----gq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347 107 YLQRSGIVLLVQ-GLPISLLILNSEPILLLL-----GQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH-----CCCHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999999876-545686997019899872-----79846667741301355034441133338999976538852288
Q ss_pred HHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999854010346777762356865443200012211101110002310121036-5444567754324100013468887
Q gi|254780793|r 163 IAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG-VKLRFQYPRLTHNVKFFLKLTFPLM 241 (518)
Q Consensus 163 ~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~l~~~~p~~ 241 (518)
+......... ....+........+..+.+.+..++...+...+..+.+..+ .+.+-.+....++.++++++++|..
T Consensus 181 ~~~~~~~~lh---i~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~ 257 (473)
T KOG1347 181 VIGLVALVLH---ILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSA 257 (473)
T ss_pred HHHHHHHHHC---CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9988888740---2100136884355887612454336899999763304532616655343565532899999864403
Q ss_pred HHHHHCCCHHHHHCCCCCCC---CCCHHHHHHHHH----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64320120233320255655---663057777533----21100000011123221002344443322367899989754
Q gi|254780793|r 242 VTGGIIQISNIVGRAIASRE---TGIISAIQYAER----IYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAI 314 (518)
Q Consensus 242 l~~~~~~i~~~i~~~~as~~---~g~vs~~~~a~~----l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~ 314 (518)
+......-..-+-....+.- .-+++....... .++.|. +++.+.=.++++..++||.+..|.....+.
T Consensus 258 ~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~-----~~~~a~strv~neLGag~p~~ar~~~~v~~ 332 (473)
T KOG1347 258 VMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPG-----AFSAAVSTRVSNELGAGKPKRARVSAKVAL 332 (473)
T ss_pred HEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 233388999999999906658850457889999998899987543-----310024478776650688777556788999
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11344215899999852572311121047864455456666555420105677531232023544331013467778886
Q gi|254780793|r 315 ECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI 394 (518)
Q Consensus 315 ~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~ 394 (518)
.....++.-.........+..-. +|- -|.+..+.++.....++......+...+...+..+.|.++.-.++++...
T Consensus 333 ~~~~~~g~~~~~~~~~~r~~~~~-ift---~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~y 408 (473)
T KOG1347 333 QTSVAIGASLGTTLLACREVLGQ-IFT---NSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAY 408 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHEEEEEEEE
T ss_conf 99999999886786434415666-427---86999999998859999999743763002003885310110026740069
Q ss_pred -HHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -89999987520--211200499999999999999999999
Q gi|254780793|r 395 -AINLTIAIGSF--PFIGGYGIALAEVSSSWVNTICLAITL 432 (518)
Q Consensus 395 -~vni~l~~~li--~~~G~~G~a~at~i~~~~~~~~~~~~l 432 (518)
++.+.+...+. ..+|..|++.+...+..+.+..+....
T Consensus 409 yl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~ 449 (473)
T KOG1347 409 YLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVT 449 (473)
T ss_pred EEECCCCEEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHE
T ss_conf 99646335788799706834986105899999999997823
No 32
>KOG1347 consensus
Probab=99.47 E-value=3e-13 Score=86.45 Aligned_cols=229 Identities=15% Similarity=0.172 Sum_probs=176.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 324100013468887643201202333202556-556630577775332110-000001112322100234444332236
Q gi|254780793|r 227 THNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSL-PVGVIGGAMMIVILPALSRSLRSKNKQ 304 (518)
Q Consensus 227 ~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l-~~~i~~~ai~~~~~P~ls~~~~~~d~~ 304 (518)
..+.|++.+++.|.++....+.....++..+.+ .++-..++...+....+. ..++. ..+..++-|..+|+++.++.+
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~-~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSIL-LGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHH-HCCHHHHCCCCHHHCCCCHHH
T ss_conf 8999999986131999999988777888864016674023346666532244340234-241031302104541862122
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78999897541134421589999985257231112104786445545666655542010567753123202354433101
Q gi|254780793|r 305 KSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMK 384 (518)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~ 384 (518)
......+++.-.....++|.+... ...+|+...+-+ +++-........++..++++.+...+...+.++++++..
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq----~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~ 177 (473)
T KOG1347 103 ALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQ----DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITL 177 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCC----CHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 338899999999987654568699-701989987279----846667741301355034441133338999976538852
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHH
Q ss_conf 34677788868999998752021--12004999999999999999999999711------57889889999999999999
Q gi|254780793|r 385 APMKFTIVSIAINLTIAIGSFPF--IGGYGIALAEVSSSWVNTICLAITLLKRK------QINLPFKTIYRILSVSISAG 456 (518)
Q Consensus 385 ~~~~~~~~~~~vni~l~~~li~~--~G~~G~a~at~i~~~~~~~~~~~~l~k~~------~~~~~~~~~~~~~~~~~~~~ 456 (518)
...+.+..+..+++.++++++.. +|..|++++..+++|+....+..+..-.. ......+.++...+..+++.
T Consensus 178 ~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~ 257 (473)
T KOG1347 178 PLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSA 257 (473)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 28899888887402100136884355887612454336899999763304532616655343565532899999864403
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780793|r 457 LMGFF 461 (518)
Q Consensus 457 im~~~ 461 (518)
+|.-.
T Consensus 258 ~micl 262 (473)
T KOG1347 258 VMICL 262 (473)
T ss_pred HEEHH
T ss_conf 23338
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.35 E-value=1.6e-10 Score=72.03 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=19.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCHH-HHHCCCCCCCCC
Q ss_conf 677543241000134688876432012023-332025565566
Q gi|254780793|r 222 QYPRLTHNVKFFLKLTFPLMVTGGIIQISN-IVGRAIASRETG 263 (518)
Q Consensus 222 ~~~~~~~~~k~~l~~~~p~~l~~~~~~i~~-~i~~~~as~~~g 263 (518)
..+..++..|.-+.............+++. .+..++.....|
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~~G 250 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVG 250 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 6789999999998999999999999985799999995787932
No 34
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=98.10 E-value=0.00034 Score=38.70 Aligned_cols=211 Identities=14% Similarity=0.037 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCC-C-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 346888764320120233320255-6-55663057777533211000000111232210023444433223678999897
Q gi|254780793|r 235 KLTFPLMVTGGIIQISNIVGRAIA-S-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQ 312 (518)
Q Consensus 235 ~~~~p~~l~~~~~~i~~~i~~~~a-s-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~ 312 (518)
|.+.....++.......++...+. . .++...+.+..+..+.++...+....++++.....+ +++.++.+....
T Consensus 3 kn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG~~~l~~~~~~~~~~~~~lG~~~a~~r~~~----~~~~~~~~~~~~- 77 (272)
T pfam01943 3 KNALVLLLAQLISKLLPFVTLPYLARVLGPEGFGLYSFALAIVGLFVIFADLGLNAALVREIA----RYRDDEKSSKYI- 77 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHH-
T ss_conf 688999999999999999999999999499986899999999999999998732599999987----523088889999-
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 54113442158999998525723111210478644554566665554201056775312320235443310134677788
Q gi|254780793|r 313 AIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIV 392 (518)
Q Consensus 313 ~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~ 392 (518)
.......-..........++. .++.. ++.. ...........+............++.++.+........
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (272)
T pfam01943 78 ---SNVLLGKLLLSLIFLLILLIA-AFLGL-----PDLA--VILLILALAILLLPGVSQFFSWLFQGLEKMKYIAISMII 146 (272)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH-HHHCC-----CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---999999999999999999999-99878-----4379--999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8689999987520-21120049999999999999999999997115---788988999999999999999999
Q gi|254780793|r 393 SIAINLTIAIGSF-PFIGGYGIALAEVSSSWVNTICLAITLLKRKQ---INLPFKTIYRILSVSISAGLMGFF 461 (518)
Q Consensus 393 ~~~vni~l~~~li-~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~---~~~~~~~~~~~~~~~~~~~im~~~ 461 (518)
.......+...+. ...+..+...+...+..+.....+...+|+.. ...+++..++.++...+..+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~ 219 (272)
T pfam01943 147 EKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFVFFSLKLFKELLRFSWPLFLSSLA 219 (272)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999971569999999999999999999999999853564678899999999887899999999
No 35
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.30 E-value=0.0064 Score=31.94 Aligned_cols=348 Identities=14% Similarity=0.163 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78999999997899999997577899999999999844897899999999999999999999999999653434445788
Q gi|254780793|r 37 VTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAP 116 (518)
Q Consensus 37 ~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~ 116 (518)
....|....+-...+..+.++ +++-.+.+..+...=+++.+ +..-+......++...-.+++.+. -...
T Consensus 58 ~~~~Flssv~Y~~ifS~IiTg-g~q~iiTRfiSD~lF~k~~~---kIlpsy~Gvi~lv~~~a~~ig~~v-----f~~~-- 126 (467)
T COG4267 58 LSPQFLSSVTYCFIFSQIITG-GFQLIITRFISDCLFEKKQR---KILPSYIGVILLVTLVAGVIGLIV-----FFVN-- 126 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HHHC--
T ss_conf 449999999999999999964-38899999988788788898---876767899999999999998776-----3204--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHH
Q ss_conf 754101111245655444332124688876--568899884222799999985401034677776235686544320001
Q gi|254780793|r 117 GFADQSDKYFLTIQLSRVMFPSIIFISLAS--LVTGMLFALGRYFIASIAPIVINVFPIFALTYALWHPSSPQETTYLLA 194 (518)
Q Consensus 117 g~~~~~~~~~la~~~~~i~~p~~~~~~~~~--~~~~~l~~~~~f~~~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a 194 (518)
++. ... .|+.+ +..|..++. +....+-+.++++..-.+-.+-+........+ .... ...++-
T Consensus 127 ---~~~---si~---yk~l~-~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~---~~~~---~ie~lL 190 (467)
T COG4267 127 ---NQY---SIV---YKILA-CALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARL---FLKS---PIEGLL 190 (467)
T ss_pred ---CCH---HHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHH
T ss_conf ---855---599---99999-9999999999999999998899999999999999999999999---9973---799999
Q ss_pred HHHHHHHHHHHCCCC-CHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC-CC-HHHHHHH
Q ss_conf 221110111000231-01210365444567754324100013468887643201202333202556556-63-0577775
Q gi|254780793|r 195 WGVFLSNVVHFWIVY-CCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASRET-GI-ISAIQYA 271 (518)
Q Consensus 195 ~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~~~-g~-vs~~~~a 271 (518)
.+..+|..+...... ...+..+.+.+..++..+.. |+ -....+..-.+.+..++|+++....+ |. ++.-..+
T Consensus 191 L~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL~~~-~~----y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~ 265 (467)
T COG4267 191 LTLDIGIFIILFLLNFYILRYFKSSRRIGFDFLLYR-RK----YPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFA 265 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHH-HC----CHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCEEC
T ss_conf 999975899999999999996432312330044464-20----4489999989876755614045766877776043642
Q ss_pred HH----------HHHCCC-CCCCCCCCCCCCHHHHHHHH-----------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 33----------211000-00011123221002344443-----------322367899989754113442158999998
Q gi|254780793|r 272 ER----------IYSLPV-GVIGGAMMIVILPALSRSLR-----------SKNKQKSFELQNQAIECISFFGIPSAVALF 329 (518)
Q Consensus 272 ~~----------l~~l~~-~i~~~ai~~~~~P~ls~~~~-----------~~d~~~~~~~~~~~~~~~~~i~~p~~~~l~ 329 (518)
.. +..+|- .+|..++-|...|.--+.+. +++++++...+++++--.+-+-..+++.++
T Consensus 266 S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~f 345 (467)
T COG4267 266 SPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCF 345 (467)
T ss_pred CHHHHHHHHHHHHHHCCHHHEEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50201799999998500242255553306789999999998579977899989999999999999999999999999999
Q ss_pred HCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
Q ss_conf 525723111210478644554566665554201056775312320235443310134677788868999998752---02
Q gi|254780793|r 330 MLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGS---FP 406 (518)
Q Consensus 330 ~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~l~~~l---i~ 406 (518)
.+++.+.. +++ -++.. -+...+..+|.........+...+.=.++.+..+..+..-.+.|.++.++. +|
T Consensus 346 lL~~~Ll~-~~~-----lS~~~--l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp 417 (467)
T COG4267 346 LLADALLL-WFG-----LSEYY--LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGP 417 (467)
T ss_pred HHHHHHHH-HCC-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98999998-728-----59998--88999999988999999999999998876313552236999986789888977286
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 112004999999999999
Q gi|254780793|r 407 FIGGYGIALAEVSSSWVN 424 (518)
Q Consensus 407 ~~G~~G~a~at~i~~~~~ 424 (518)
.+-..|...|..++-.+.
T Consensus 418 ~~~g~gff~a~fl~vlv~ 435 (467)
T COG4267 418 GYYGVGFFLASFLYVLVA 435 (467)
T ss_pred CCEEHHHHHHHHHHHHHH
T ss_conf 500259999999999999
No 36
>pfam04506 Rft-1 Rft protein.
Probab=97.16 E-value=0.0093 Score=31.10 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 91368899999999999999999999999995777578
Q gi|254780793|r 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVT 38 (518)
Q Consensus 1 m~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~ 38 (518)
+|-++|+..++..-++||++-|+-...+.|+.+++..+
T Consensus 1 ~ss~~Gas~li~~Qi~sR~iTF~lNq~llR~lsp~ilG 38 (533)
T pfam04506 1 ESSFSGLVFSIRGQLIARILTFAINMYLIRRISPDVLG 38 (533)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 97633209999999999999999989999828888960
No 37
>KOG2864 consensus
Probab=96.68 E-value=0.015 Score=30.05 Aligned_cols=20 Identities=5% Similarity=-0.056 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHCCCHH
Q ss_conf 78999999999998448978
Q gi|254780793|r 59 IFHNSFIPLFSQEKENNGSE 78 (518)
Q Consensus 59 ~~~~a~ip~~~~~~~~~~~~ 78 (518)
+.+.+.++..-.....-|..
T Consensus 97 ~i~~~~i~~wl~~~~s~d~i 116 (530)
T KOG2864 97 AINVACIYFWLGFLSSSDEI 116 (530)
T ss_pred HHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999876423303
No 38
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=90.33 E-value=0.81 Score=20.86 Aligned_cols=125 Identities=11% Similarity=-0.020 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC-CHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 678999897541134421589999985257231-1121047864455456666555420105677531232023544331
Q gi|254780793|r 304 QKSFELQNQAIECISFFGIPSAVALFMLSKEIV-QTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQND 382 (518)
Q Consensus 304 ~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii-~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~ 382 (518)
+.+|+.--+++-.+.+.++..+...+..|.... +...+- .+.....-..-....+..+....+.+...
T Consensus 178 ~nLK~gC~~Gvg~C~l~S~ll~~~Gi~aA~tAA~e~~~g~-----------~s~~i~~~~~~~l~g~nff~~~SlEsa~~ 246 (315)
T TIGR01478 178 KNLKKGCTAGVGTCALSSALLGLIGIAAAKTAAIEAIIGS-----------YSLDIANKCTKALAGINFFFLSSLESALK 246 (315)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4110345103689889999998888999879998888763-----------01578889999999999997889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0134677788868999998752-02112004999999999999999999999711578
Q gi|254780793|r 383 MKAPMKFTIVSIAINLTIAIGS-FPFIGGYGIALAEVSSSWVNTICLAITLLKRKQIN 439 (518)
Q Consensus 383 ~~~~~~~~~~~~~vni~l~~~l-i~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~ 439 (518)
+-.+....+.|+....-...-. --.|+.+|+|.=-.+.-.+..+++|+|++||.+-.
T Consensus 247 t~~~t~~~lmga~~~~~~~a~~~~Stf~PyGIAAlVLi~L~V~LIiLYIWLYrRRK~S 304 (315)
T TIGR01478 247 TAVGTIVSLMGAADEAESAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKS 304 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 7345775365324666557888887861358999999999999999988885640303
No 39
>PRK11017 codB cytosine permease; Provisional
Probab=89.80 E-value=0.9 Score=20.63 Aligned_cols=89 Identities=19% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 021120049999999999999999999997115788988-9999999999999999999999998655310002799999
Q gi|254780793|r 405 FPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFK-TIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFFDPFK 483 (518)
Q Consensus 405 i~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~-~~~~~~~~~~~~~im~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (518)
.+.+...|..+. -+....+.-+++.||.++..+.. .....-...+.+-+.+..+.+..+.+ ++
T Consensus 300 ~~FL~~lg~~~~----Pi~GImiaDYyi~rr~~~~~~~~~~~~~~n~~aiia~~iG~~~~~~~~~i----------~~-- 363 (394)
T PRK11017 300 VGWLTLLGSAIP----PVGGVIIADYFYNRRGRYPDFATARFPRVNWAAILAVALGIAAGHFLPGI----------VP-- 363 (394)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCH----------HH--
T ss_conf 999999999998----99999999987402454675110357886899999999999999990663----------16--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9999999999999999999600789999
Q gi|254780793|r 484 NLVIMLSGAMLVYLFSIFLFLGKDFLSP 511 (518)
Q Consensus 484 ~l~~~i~~~~~vY~~~l~l~~~~~~~~~ 511 (518)
+....++.++|.....+.+.|...+.
T Consensus 364 --l~~li~a~v~Y~vl~k~~~~~~~~~~ 389 (394)
T PRK11017 364 --VNAVLGGALSYIILNPLLNRKTAAAS 389 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf --99999999999999998452000516
No 40
>pfam07260 ANKH Progressive ankylosis protein (ANKH). This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterized by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones.
Probab=88.84 E-value=0.79 Score=20.92 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCC
Q ss_conf 54443321246888765688998842227---999999854010346777762356865443200012211101110002
Q gi|254780793|r 131 LSRVMFPSIIFISLASLVTGMLFALGRYF---IASIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWI 207 (518)
Q Consensus 131 ~~~i~~p~~~~~~~~~~~~~~l~~~~~f~---~~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~ 207 (518)
....+..+.++.++.-+..|++--|++.. ..+++.+..+++. ............+..+.-..+...|..+.+..
T Consensus 131 A~L~l~~fPlLDa~AwihaGiLlkhk~S~iVg~aSI~DV~~Qvv~---~~il~~s~l~~~ePllIPIlaly~G~lvr~t~ 207 (345)
T pfam07260 131 AFLYLAAFPFLDAMAWIHAGILLKHKYSFLVGCASISDVIAQIVF---VAILLHSHLECFEPLLIPILALYIGALVRCTT 207 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHHHHHHHH---HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999997617788899998526775122103450189899999999---99999962786786019999998778898888
Q ss_pred CCCH-HHCCCCCCC-CCCC--CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC-C------CHHHHHHHHHHHH
Q ss_conf 3101-210365444-5677--54324100013468887643201202333202556556-6------3057777533211
Q gi|254780793|r 208 VYCC-AKNDGVKLR-FQYP--RLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASRET-G------IISAIQYAERIYS 276 (518)
Q Consensus 208 ~~~~-~~~~~~~~~-~~~~--~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~~~-g------~vs~~~~a~~l~~ 276 (518)
.... .++...+.+ .+.+ ..+.++|+++++..|..+....+.+.--+-+.+.|... | +++.+......-.
T Consensus 208 v~lGy~~~v~~~~p~~~~~~~~~~~Ti~kmL~FwwPL~li~atQr~SRPivNL~VSRdlgGssa~~eavAVLt~tYPVgH 287 (345)
T pfam07260 208 LCLGYYCNIHDIIPESSGPDIGGDATIKKMLSFWWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGH 287 (345)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCHHHHHHEEEEEEEECCCC
T ss_conf 88849988710274336866688634999999876899999876623650313664178997012101035675200466
Q ss_pred CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0000001112322100234444
Q gi|254780793|r 277 LPVGVIGGAMMIVILPALSRSL 298 (518)
Q Consensus 277 l~~~i~~~ai~~~~~P~ls~~~ 298 (518)
+|+|-+.. ....+|..-++-
T Consensus 288 ~pYgWl~~--lrav~PAF~k~n 307 (345)
T pfam07260 288 MPYGWFTD--ICARSPAFDKSN 307 (345)
T ss_pred CCCHHHHH--HHHHCCCCCCCC
T ss_conf 87187877--877352011489
No 41
>PRK11281 potassium efflux protein KefA; Provisional
Probab=71.62 E-value=4.9 Score=16.73 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 04999999999999999999
Q gi|254780793|r 411 YGIALAEVSSSWVNTICLAI 430 (518)
Q Consensus 411 ~G~a~at~i~~~~~~~~~~~ 430 (518)
.|.|+.|...|.+..+-...
T Consensus 873 t~yaitTl~~Y~i~~~G~~~ 892 (1107)
T PRK11281 873 TSYAITTLLTYIIIAIGAVT 892 (1107)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 63299999999999999999
No 42
>PTZ00042 stevor; Provisional
Probab=63.03 E-value=7.5 Score=15.76 Aligned_cols=34 Identities=26% Similarity=0.116 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 1120049999999999999999999997115788
Q gi|254780793|r 407 FIGGYGIALAEVSSSWVNTICLAITLLKRKQINL 440 (518)
Q Consensus 407 ~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~ 440 (518)
.|+..|+|.-..+.-.+..+++++|++||.+.+.
T Consensus 261 ~F~P~GIaalVLlilaVvLIILYIWLyrRRKnSW 294 (304)
T PTZ00042 261 AFYPCGIAALVLLILAVVLIILYIWLYRRRKNSW 294 (304)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 4116299999999999999999999998412421
No 43
>TIGR01129 secD protein-export membrane protein SecD; InterPro: IPR005791 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. This entry describes the SecD family of transport proteins. Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=53.48 E-value=11 Score=14.85 Aligned_cols=52 Identities=12% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 864455456666555420105677531-23202354433101346777888689
Q gi|254780793|r 344 AFSSQNTILVSSFLSIYSIGILANILS-KSLSTAFYAQNDMKAPMKFTIVSIAI 396 (518)
Q Consensus 344 ~F~~~~~~~~~~~L~~~~~~~~~~~~~-~i~~~~~~a~g~~~~~~~~~~~~~~v 396 (518)
+||.++....+.+|+--++..+..... ....+.+ +.+.-+.-++++++|.++
T Consensus 330 ~Ft~~eA~dLA~~LR~GaLP~~~~~~e~r~iGP~L-G~d~i~~G~~A~~~Gl~l 382 (522)
T TIGR01129 330 NFTAEEANDLALLLRSGALPAPLQILEERTIGPSL-GADSIEAGIKAGLIGLVL 382 (522)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 99889999999998775125460785102204564-389999999999999999
No 44
>pfam04138 GtrA GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosyla
Probab=48.71 E-value=13 Score=14.43 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 777888689999987520211200499999999999999999999971157889-8899999999999999
Q gi|254780793|r 388 KFTIVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLP-FKTIYRILSVSISAGL 457 (518)
Q Consensus 388 ~~~~~~~~vni~l~~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~-~~~~~~~~~~~~~~~i 457 (518)
..+.++.+++..+-+.+...+|.. ..+|..++..++....+. +.|+.-++.. .+..++..+..+....
T Consensus 4 ivG~~~~~v~~~~~~~l~~~~~~~-~~~A~~ia~~~~~~~~f~-~n~~~tF~~~~~~~~~~~~~f~~~~~~ 72 (116)
T pfam04138 4 LVGVLGTLVDLGVFLLLLNLLGLS-YLLANAIAFLVAILFNYL-LNRRWTFRSRGRGSLRQFLRFFLVSLL 72 (116)
T ss_pred EEEHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH-HHHHEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 763999999999999999997888-999999999999999999-775026579996349999999999999
No 45
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=32.72 E-value=25 Score=13.03 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=23.0
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520211200499999999999999999999971157889889999999999999999999
Q gi|254780793|r 403 GSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFI 462 (518)
Q Consensus 403 ~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~im~~~~ 462 (518)
.+.-.+|.++- .++..-+.+ +....||++.+.++++ ..|..++..+....+
T Consensus 360 ~lG~~lGgN~T----~iGS~ANli--~~~~~~~~G~~isf~~---f~k~G~~~t~~~l~v 410 (416)
T cd01118 360 LIGVDLGPKLT----PIGSLATLL--WLHVLRRKGIRVSWGY---YLKVGLIVTPPVLVV 410 (416)
T ss_pred HHHCCCCHHHH----HHHHHHHHH--HHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHH
T ss_conf 99757002465----999999999--9999998799877899---999928999999999
No 46
>TIGR02121 Na_Pro_sym sodium/proline symporter; InterPro: IPR011851 This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. ; GO: 0005298 proline:sodium symporter activity, 0031402 sodium ion binding, 0006814 sodium ion transport, 0015824 proline transport, 0016021 integral to membrane.
Probab=26.57 E-value=32 Score=12.44 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHHHCCCH-----HHHHCCCCCCCCCCHHHHHHHHHHH--HCCCCC----CCCCCCCCCCHHHHHHHH
Q ss_conf 00013468887643201202-----3332025565566305777753321--100000----011123221002344443
Q gi|254780793|r 231 KFFLKLTFPLMVTGGIIQIS-----NIVGRAIASRETGIISAIQYAERIY--SLPVGV----IGGAMMIVILPALSRSLR 299 (518)
Q Consensus 231 k~~l~~~~p~~l~~~~~~i~-----~~i~~~~as~~~g~vs~~~~a~~l~--~l~~~i----~~~ai~~~~~P~ls~~~~ 299 (518)
|..-.++++.+++..+.=+. -++-|+++......+ ..|.++- -+.+++ +.-=++.+.++..+.+.+
T Consensus 238 ~Ga~~LS~i~iIS~laWGLGYFGQPHIivRFMa~~s~~el---~~AR~Ig~~Wm~lsllGA~~vG~~GiAy~~~~p~~~~ 314 (517)
T TIGR02121 238 KGASVLSVIAIISLLAWGLGYFGQPHIIVRFMAIRSHKEL---PKARRIGMSWMILSLLGAIAVGLVGIAYFNKNPAHVE 314 (517)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCC
T ss_conf 0663102545555433331046884376663203774135---7766899999999999898852102478847898630
Q ss_pred HHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHH-HHHHHHHHCHHHHHHHHCCCCH
Q ss_conf 3223---67899989754113442158999998525723111210478644554566-6655542010567753123202
Q gi|254780793|r 300 SKNK---QKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILV-SSFLSIYSIGILANILSKSLST 375 (518)
Q Consensus 300 ~~d~---~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~-~~~L~~~~~~~~~~~~~~i~~~ 375 (518)
-+|+ |++--.+.|.+ ==|...|+.+-+ |. .++.-| +.-|..-+-++ ..+..-.
T Consensus 315 ~~d~~~yE~iFI~~~~~L------FhP~iaG~LLaA--IL-----------AAIMSTisSQLLVsSSal----tEDfYK~ 371 (517)
T TIGR02121 315 LADPKAYETIFIVLSQIL------FHPWIAGILLAA--IL-----------AAIMSTISSQLLVSSSAL----TEDFYKA 371 (517)
T ss_pred CCCCCCCHHHHHHHHHHH------HHHHHHHHHHHH--HH-----------HHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 047875115689899887------335689999999--99-----------999876876898758899----9999987
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC--C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 3544---33101346777888689999987520--2---11200499999999999999999999971157889889999
Q gi|254780793|r 376 AFYA---QNDMKAPMKFTIVSIAINLTIAIGSF--P---FIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYR 447 (518)
Q Consensus 376 ~~~a---~g~~~~~~~~~~~~~~vni~l~~~li--~---~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~~~ 447 (518)
.+.. ..-+|.-++.+=.++++=-+....|- | .++..|-|||=--+ .++-++++=...||. ++
T Consensus 372 ~~~~eka~aS~ke~v~vGR~~VlvvA~iA~~LA~nP~s~vL~LVgYAWAGFGa-aFGPvvLlsLyWKrm----~r----- 441 (517)
T TIGR02121 372 FLKKEKAEASQKELVMVGRLSVLVVAIIAIVLAMNPDSSVLDLVGYAWAGFGA-AFGPVVLLSLYWKRM----TR----- 441 (517)
T ss_pred HHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC----CH-----
T ss_conf 52302278976543306679999999999999718879601013455533104-577899998641000----39-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998
Q gi|254780793|r 448 ILSVSISAGLMGFFIILFRPY 468 (518)
Q Consensus 448 ~~~~~~~~~im~~~~~~~~~~ 468 (518)
+-.+++.+.|.+.......
T Consensus 442 --~GAl~GM~~Ga~TVi~W~~ 460 (517)
T TIGR02121 442 --NGALAGMVIGAVTVIVWKT 460 (517)
T ss_pred --HHHHHHHHHHHHHHHHHHH
T ss_conf --9999999999999999999
No 47
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=25.84 E-value=32 Score=12.46 Aligned_cols=26 Identities=23% Similarity=0.666 Sum_probs=13.5
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999653434445788754101111
Q gi|254780793|r 100 VVVELILPLLIRFIIAPGFADQSDKY 125 (518)
Q Consensus 100 ~l~~~~~~~~~~~l~a~g~~~~~~~~ 125 (518)
.+.-.--|.|++++..||++|+++..
T Consensus 158 ~L~~~~kP~WiRYVlVPGyTD~~eDi 183 (243)
T TIGR02493 158 YLAKRNKPIWIRYVLVPGYTDSEEDI 183 (243)
T ss_pred HHHHCCCCEEEEEEECCCCCCCHHHH
T ss_conf 99965898899998658877998999
Done!