HHsearch alignment for GI: 254780793 and conserved domain: pfam01943
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=99.89 E-value=6e-22 Score=132.39 Aligned_cols=269 Identities=13% Similarity=0.186 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 36889999999999999999999999999577757899999999789999999757789999999999984489789999
Q gi|254780793|r 3 IIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQR 82 (518)
Q Consensus 3 ~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~ 82 (518)
T Consensus 1 llkn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG-~~~l~~~~~~~~~~~~~lG-~~~a~~r~~~~~~~----~~~~~ 74 (272)
T pfam01943 1 LLKNALVLLLAQLISKLLPFVTLPYLARVLGPEGFG-LYSFALAIVGLFVIFADLG-LNAALVREIARYRD----DEKSS 74 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC----HHHHH
T ss_conf 906889999999999999999999999994999868-9999999999999999873-25999999875230----88889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999996534344457887541011112456554443321246888765688998842227999
Q gi|254780793|r 83 LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIAS 162 (518)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a 162 (518)
T Consensus 75 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (272)
T pfam01943 75 KY----ISNVLLGKLLLSLIFLLILLIAAFLGLP-----DL----AVILLILALAILLLPGVSQFFSWLFQGLEKMKYIA 141 (272)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99----9999999999999999999999998784-----37----99999999999999999999999999999899999
Q ss_pred HHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99985401034677776235686544320001221110111000231012103654445677543241000134688876
Q gi|254780793|r 163 IAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMV 242 (518)
Q Consensus 163 ~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~l 242 (518)
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~l~~~~p~~~ 215 (272)
T pfam01943 142 ISMIIEKLGSLILVFIAVFLGL----DLLAAVLILLIASLIGGIIALAVLRKKFLP--RFVFFSLKLFKELLRFSWPLFL 215 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999715----699999999999999999999999998535--6467889999999988789999
Q ss_pred HHHHCCCHHHHHCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 432012023332025565--5663057777533211000000111232210023444
Q gi|254780793|r 243 TGGIIQISNIVGRAIASR--ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRS 297 (518)
Q Consensus 243 ~~~~~~i~~~i~~~~as~--~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~ 297 (518)
T Consensus 216 ~~~~~~l~~~~d~~il~~~~~~~~vG~Ys~a~~l~~~~~~l-~~~~~~~l~P~~s~l 271 (272)
T pfam01943 216 SSLAISLYTYIDTVMLGLMLGAYAVGIYSAAYKLLVILLSL-IASIVTVLFPRFSKL 271 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
T ss_conf 99999999999999999878999952699999999999999-999999999998648