HHsearch alignment for GI: 254780793 and conserved domain: pfam01943

>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=99.89  E-value=6e-22  Score=132.39  Aligned_cols=269  Identities=13%  Similarity=0.186  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             36889999999999999999999999999577757899999999789999999757789999999999984489789999
Q gi|254780793|r    3 IIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQR   82 (518)
Q Consensus         3 ~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~   82 (518)
T Consensus         1 llkn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG-~~~l~~~~~~~~~~~~~lG-~~~a~~r~~~~~~~----~~~~~   74 (272)
T pfam01943         1 LLKNALVLLLAQLISKLLPFVTLPYLARVLGPEGFG-LYSFALAIVGLFVIFADLG-LNAALVREIARYRD----DEKSS   74 (272)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC----HHHHH
T ss_conf             906889999999999999999999999994999868-9999999999999999873-25999999875230----88889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99999999999999999999996534344457887541011112456554443321246888765688998842227999
Q gi|254780793|r   83 LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIAS  162 (518)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a  162 (518)
T Consensus        75 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (272)
T pfam01943        75 KY----ISNVLLGKLLLSLIFLLILLIAAFLGLP-----DL----AVILLILALAILLLPGVSQFFSWLFQGLEKMKYIA  141 (272)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99----9999999999999999999999998784-----37----99999999999999999999999999999899999


Q ss_pred             HHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99985401034677776235686544320001221110111000231012103654445677543241000134688876
Q gi|254780793|r  163 IAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMV  242 (518)
Q Consensus       163 ~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~l  242 (518)
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~l~~~~p~~~  215 (272)
T pfam01943       142 ISMIIEKLGSLILVFIAVFLGL----DLLAAVLILLIASLIGGIIALAVLRKKFLP--RFVFFSLKLFKELLRFSWPLFL  215 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999715----699999999999999999999999998535--6467889999999988789999


Q ss_pred             HHHHCCCHHHHHCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             432012023332025565--5663057777533211000000111232210023444
Q gi|254780793|r  243 TGGIIQISNIVGRAIASR--ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRS  297 (518)
Q Consensus       243 ~~~~~~i~~~i~~~~as~--~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~  297 (518)
T Consensus       216 ~~~~~~l~~~~d~~il~~~~~~~~vG~Ys~a~~l~~~~~~l-~~~~~~~l~P~~s~l  271 (272)
T pfam01943       216 SSLAISLYTYIDTVMLGLMLGAYAVGIYSAAYKLLVILLSL-IASIVTVLFPRFSKL  271 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC
T ss_conf             99999999999999999878999952699999999999999-999999999998648