HHsearch alignment for GI: 254780793 and conserved domain: pfam01943
>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=98.10 E-value=0.00034 Score=38.70 Aligned_cols=211 Identities=14% Similarity=0.037 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCC-C-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 346888764320120233320255-6-55663057777533211000000111232210023444433223678999897
Q gi|254780793|r 235 KLTFPLMVTGGIIQISNIVGRAIA-S-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQ 312 (518)
Q Consensus 235 ~~~~p~~l~~~~~~i~~~i~~~~a-s-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~ 312 (518)
T Consensus 3 kn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG~~~l~~~~~~~~~~~~~lG~~~a~~r~~~----~~~~~~~~~~~~- 77 (272)
T pfam01943 3 KNALVLLLAQLISKLLPFVTLPYLARVLGPEGFGLYSFALAIVGLFVIFADLGLNAALVREIA----RYRDDEKSSKYI- 77 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHH-
T ss_conf 688999999999999999999999999499986899999999999999998732599999987----523088889999-
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 54113442158999998525723111210478644554566665554201056775312320235443310134677788
Q gi|254780793|r 313 AIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIV 392 (518)
Q Consensus 313 ~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~ 392 (518)
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (272)
T pfam01943 78 ---SNVLLGKLLLSLIFLLILLIA-AFLGL-----PDLA--VILLILALAILLLPGVSQFFSWLFQGLEKMKYIAISMII 146 (272)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH-HHHCC-----CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---999999999999999999999-99878-----4379--999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8689999987520-21120049999999999999999999997115---788988999999999999999999
Q gi|254780793|r 393 SIAINLTIAIGSF-PFIGGYGIALAEVSSSWVNTICLAITLLKRKQ---INLPFKTIYRILSVSISAGLMGFF 461 (518)
Q Consensus 393 ~~~vni~l~~~li-~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~---~~~~~~~~~~~~~~~~~~~im~~~ 461 (518)
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~ 219 (272)
T pfam01943 147 EKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFVFFSLKLFKELLRFSWPLFLSSLA 219 (272)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999971569999999999999999999999999853564678899999999887899999999