HHsearch alignment for GI: 254780793 and conserved domain: pfam01943

>pfam01943 Polysacc_synt Polysaccharide biosynthesis protein. Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon. The family includes SpoVB from Bacillus subtilis, which is involved in spore cortex biosynthesis.
Probab=98.10  E-value=0.00034  Score=38.70  Aligned_cols=211  Identities=14%  Similarity=0.037  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHCCCC-C-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             346888764320120233320255-6-55663057777533211000000111232210023444433223678999897
Q gi|254780793|r  235 KLTFPLMVTGGIIQISNIVGRAIA-S-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQ  312 (518)
Q Consensus       235 ~~~~p~~l~~~~~~i~~~i~~~~a-s-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~  312 (518)
T Consensus         3 kn~~~~~~~~~~~~~i~~i~~~i~aR~Lg~~~yG~~~l~~~~~~~~~~~~~lG~~~a~~r~~~----~~~~~~~~~~~~-   77 (272)
T pfam01943         3 KNALVLLLAQLISKLLPFVTLPYLARVLGPEGFGLYSFALAIVGLFVIFADLGLNAALVREIA----RYRDDEKSSKYI-   77 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCHHHHHHHH-
T ss_conf             688999999999999999999999999499986899999999999999998732599999987----523088889999-


Q ss_pred             HHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             54113442158999998525723111210478644554566665554201056775312320235443310134677788
Q gi|254780793|r  313 AIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIV  392 (518)
Q Consensus       313 ~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~  392 (518)
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (272)
T pfam01943        78 ---SNVLLGKLLLSLIFLLILLIA-AFLGL-----PDLA--VILLILALAILLLPGVSQFFSWLFQGLEKMKYIAISMII  146 (272)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHH-HHHCC-----CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---999999999999999999999-99878-----4379--999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8689999987520-21120049999999999999999999997115---788988999999999999999999
Q gi|254780793|r  393 SIAINLTIAIGSF-PFIGGYGIALAEVSSSWVNTICLAITLLKRKQ---INLPFKTIYRILSVSISAGLMGFF  461 (518)
Q Consensus       393 ~~~vni~l~~~li-~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~---~~~~~~~~~~~~~~~~~~~im~~~  461 (518)
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~  219 (272)
T pfam01943       147 EKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFVFFSLKLFKELLRFSWPLFLSSLA  219 (272)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999971569999999999999999999999999853564678899999999887899999999