Query gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] Match_columns 518 No_of_seqs 208 out of 3436 Neff 9.1 Searched_HMMs 33803 Date Wed Jun 1 13:52:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780793.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3l1l_A Arginine/agmatine anti 8.3 90 0.0027 9.7 7.0 38 368-405 305-342 (445) 2 >1lnq_A MTHK channels, potassi 6.9 83 0.0025 9.9 -0.7 46 260-305 60-105 (106) 3 >2knc_A Integrin alpha-IIB; tr 6.1 1.3E+02 0.004 8.8 0.1 20 198-217 19-38 (54) 4 >2akh_Y Preprotein translocase 5.0 1.7E+02 0.0051 8.2 14.6 31 230-260 191-221 (360) 5 >2gfp_A EMRD, multidrug resist 4.9 1.8E+02 0.0053 8.1 4.5 38 145-182 110-147 (375) 6 >2ih3_C Voltage-gated potassiu 3.9 1.5E+02 0.0045 8.5 -0.9 49 257-305 73-121 (122) 7 >3e86_A Potassium channel prot 3.8 1.7E+02 0.0051 8.2 -0.8 49 257-305 43-91 (96) 8 >2r9r_B Paddle chimera voltage 3.8 2.2E+02 0.0065 7.7 -0.2 54 252-305 62-115 (194) 9 >2a9h_A Voltage-gated potassiu 3.5 1.5E+02 0.0044 8.5 -1.3 59 257-315 96-154 (155) 10 >2r6f_A Excinuclease ABC subun 3.4 2.8E+02 0.0084 7.1 0.6 26 290-315 23-48 (58) No 1 >>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3hqk_A (A:) Probab=8.31 E-value=90 Score=9.71 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=21.5 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 53123202354433101346777888689999987520 Q gi|254780793|r 368 ILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSF 405 (518) Q Consensus 368 ~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~l~~~li 405 (518) +-...+.+.+.-.++.+.|-........+.+++..... T Consensus 305 a~dg~lP~~~~~~~~~~~p~~a~~~~~~~~~~~~~~~~ 342 (445) T 3l1l_A 305 ADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342 (445) T ss_dssp HHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTT T ss_pred HHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 84698777676459998917899999999999999999 No 2 >>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein, metal transport; 3.30A {Methanothermobacterthermautotrophicus} (A:1-106) Probab=6.91 E-value=83 Score=9.91 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=23.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5566305777753321100000011123221002344443322367 Q gi|254780793|r 260 RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK 305 (518) Q Consensus 260 ~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~ 305 (518) -|-|.+...+...|+......+.+..+-......+++...+.++++ T Consensus 60 iGyGd~~p~t~~~r~~~~~~~l~Gv~~~a~~i~~i~~~~~~~~~~~ 105 (106) T 1lnq_A 60 VGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMK 105 (106) T ss_dssp CCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------- T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC T ss_conf 5776786788757999999999888888755541000110000000 No 3 >>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (A:) Probab=6.14 E-value=1.3e+02 Score=8.81 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=8.1 Q ss_pred HHHHHHHHCCCCCHHHCCCC Q ss_conf 11011100023101210365 Q gi|254780793|r 198 FLSNVVHFWIVYCCAKNDGV 217 (518) Q Consensus 198 ~~g~~~~~~~~~~~~~~~~~ 217 (518) .+++++-+......++|.|+ T Consensus 19 ~i~GlllLali~~~L~K~GF 38 (54) T 2knc_A 19 VLGGLLLLTILVLAMWKVGF 38 (54) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999998272 No 4 >>2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400) Probab=5.04 E-value=1.7e+02 Score=8.23 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=17.1 Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHCCCCCC Q ss_conf 1000134688876432012023332025565 Q gi|254780793|r 230 VKFFLKLTFPLMVTGGIIQISNIVGRAIASR 260 (518) Q Consensus 230 ~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~ 260 (518) +|-.-.-..|.++++.....-..+.+.+.+. T Consensus 191 iKln~agvmPiIfassll~~p~~i~~~l~~~ 221 (360) T 2akh_Y 191 LKVNMAGVIPAIFASSIILFPATIASWFGGG 221 (360) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 0127888889999999999999999873224 No 5 >>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} (A:) Probab=4.87 E-value=1.8e+02 Score=8.14 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCC Q ss_conf 76568899884222799999985401034677776235 Q gi|254780793|r 145 ASLVTGMLFALGRYFIASIAPIVINVFPIFALTYALWH 182 (518) Q Consensus 145 ~~~~~~~l~~~~~f~~~a~~~vi~ni~~i~~~~~~~~~ 182 (518) ..........++|-+..+..+...++....+....... T Consensus 110 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 147 (375) T 2gfp_A 110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375) T ss_dssp HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS T ss_pred CCCCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCC T ss_conf 22221110234412210021101234654465434443 No 6 >>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 1jvm_A 1s5h_C* 1j95_A 2atk_C* 2nlj_C* 2dwe_C* 2dwd_C* ... (C:) Probab=3.94 E-value=1.5e+02 Score=8.51 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=0.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5565566305777753321100000011123221002344443322367 Q gi|254780793|r 257 IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK 305 (518) Q Consensus 257 ~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~ 305 (518) +.+-+-|.+...+...++..+...+.+..+-....+.+++...+.++++ T Consensus 73 ~ttvGyGDi~P~t~~~r~~~i~~~l~g~~~~a~~i~~i~~~l~~~~~~~ 121 (122) T 2ih3_C 73 ATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQER 121 (122) T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 7356667888898879999999999999999999999999999998704 No 7 >>3e86_A Potassium channel protein; non-selective cation channel, membrane protein, tetrameric cation channel family, 2-transmembrane helix channels; 1.60A {Bacillus cereus} PDB: 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A (A:) Probab=3.79 E-value=1.7e+02 Score=8.24 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=0.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5565566305777753321100000011123221002344443322367 Q gi|254780793|r 257 IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK 305 (518) Q Consensus 257 ~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~ 305 (518) +.+-|-|.+..-+...++......+.+..+-....+.+++...+.+.++ T Consensus 43 ~tTvGyGd~~p~t~~~~~f~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~ 91 (96) T 3e86_A 43 LTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 91 (96) T ss_dssp HTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHG T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9825788877798467999999999999999999999999998899983 No 8 >>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 2a79_B* (B:321-514) Probab=3.79 E-value=2.2e+02 Score=7.66 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=0.0 Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 332025565566305777753321100000011123221002344443322367 Q gi|254780793|r 252 IVGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK 305 (518) Q Consensus 252 ~i~~~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~ 305 (518) +....+.+-|.|.++..+...++......+++..+-......++....+.+.++ T Consensus 62 ~~~~tlttvGyGDi~p~t~~e~~~~~~~~l~G~~~~~~~i~~i~~~~~~~~~~~ 115 (194) T 2r9r_B 62 WAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 115 (194) T ss_dssp HHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 468874121476877667676677203889989999999999999999999999 No 9 >>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} (A:) Probab=3.45 E-value=1.5e+02 Score=8.54 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=0.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55655663057777533211000000111232210023444433223678999897541 Q gi|254780793|r 257 IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIE 315 (518) Q Consensus 257 ~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518) +.+.|.|.++..+...++......+++..+-......+++...+.|.++-++.-+.--| T Consensus 96 lttvGyGdi~P~t~~~~~f~~~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~ 154 (155) T 2a9h_A 96 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK 154 (155) T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------------ T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 71167898334788799999999999999999999999999999999999999997416 No 10 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:291-311,A:394-430) Probab=3.36 E-value=2.8e+02 Score=7.08 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10023444433223678999897541 Q gi|254780793|r 290 ILPALSRSLRSKNKQKSFELQNQAIE 315 (518) Q Consensus 290 ~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518) +.|.+-|.+.+-+.+..++.+.+-++ T Consensus 23 II~~LeRRY~ET~SE~~Re~LekYMs 48 (58) T 2r6f_A 23 VIPNVERRYRETSSDYIREQXEKYXA 48 (58) T ss_dssp HHHHHHHHHHHCCCTTHHHHHGGGEE T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHCC T ss_conf 52327888887307888999986413 Done!