Query         gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 518
No_of_seqs    208 out of 3436
Neff          9.1 
Searched_HMMs 33803
Date          Wed Jun  1 13:52:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780793.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3l1l_A Arginine/agmatine anti   8.3      90  0.0027    9.7   7.0   38  368-405   305-342 (445)
  2 >1lnq_A MTHK channels, potassi   6.9      83  0.0025    9.9  -0.7   46  260-305    60-105 (106)
  3 >2knc_A Integrin alpha-IIB; tr   6.1 1.3E+02   0.004    8.8   0.1   20  198-217    19-38  (54)
  4 >2akh_Y Preprotein translocase   5.0 1.7E+02  0.0051    8.2  14.6   31  230-260   191-221 (360)
  5 >2gfp_A EMRD, multidrug resist   4.9 1.8E+02  0.0053    8.1   4.5   38  145-182   110-147 (375)
  6 >2ih3_C Voltage-gated potassiu   3.9 1.5E+02  0.0045    8.5  -0.9   49  257-305    73-121 (122)
  7 >3e86_A Potassium channel prot   3.8 1.7E+02  0.0051    8.2  -0.8   49  257-305    43-91  (96)
  8 >2r9r_B Paddle chimera voltage   3.8 2.2E+02  0.0065    7.7  -0.2   54  252-305    62-115 (194)
  9 >2a9h_A Voltage-gated potassiu   3.5 1.5E+02  0.0044    8.5  -1.3   59  257-315    96-154 (155)
 10 >2r6f_A Excinuclease ABC subun   3.4 2.8E+02  0.0084    7.1   0.6   26  290-315    23-48  (58)

No 1  
>>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3hqk_A (A:)
Probab=8.31  E-value=90  Score=9.71  Aligned_cols=38  Identities=13%  Similarity=0.081  Sum_probs=21.5

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             53123202354433101346777888689999987520
Q gi|254780793|r  368 ILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSF  405 (518)
Q Consensus       368 ~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~l~~~li  405 (518)
                      +-...+.+.+.-.++.+.|-........+.+++.....
T Consensus       305 a~dg~lP~~~~~~~~~~~p~~a~~~~~~~~~~~~~~~~  342 (445)
T 3l1l_A          305 ADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI  342 (445)
T ss_dssp             HHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTT
T ss_pred             HHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             84698777676459998917899999999999999999


No 2  
>>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein, metal transport; 3.30A {Methanothermobacterthermautotrophicus} (A:1-106)
Probab=6.91  E-value=83  Score=9.91  Aligned_cols=46  Identities=17%  Similarity=0.132  Sum_probs=23.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5566305777753321100000011123221002344443322367
Q gi|254780793|r  260 RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK  305 (518)
Q Consensus       260 ~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~  305 (518)
                      -|-|.+...+...|+......+.+..+-......+++...+.++++
T Consensus        60 iGyGd~~p~t~~~r~~~~~~~l~Gv~~~a~~i~~i~~~~~~~~~~~  105 (106)
T 1lnq_A           60 VGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMK  105 (106)
T ss_dssp             CCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
T ss_conf             5776786788757999999999888888755541000110000000


No 3  
>>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens} (A:)
Probab=6.14  E-value=1.3e+02  Score=8.81  Aligned_cols=20  Identities=15%  Similarity=0.155  Sum_probs=8.1

Q ss_pred             HHHHHHHHCCCCCHHHCCCC
Q ss_conf             11011100023101210365
Q gi|254780793|r  198 FLSNVVHFWIVYCCAKNDGV  217 (518)
Q Consensus       198 ~~g~~~~~~~~~~~~~~~~~  217 (518)
                      .+++++-+......++|.|+
T Consensus        19 ~i~GlllLali~~~L~K~GF   38 (54)
T 2knc_A           19 VLGGLLLLTILVLAMWKVGF   38 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999998272


No 4  
>>2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400)
Probab=5.04  E-value=1.7e+02  Score=8.23  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=17.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
Q ss_conf             1000134688876432012023332025565
Q gi|254780793|r  230 VKFFLKLTFPLMVTGGIIQISNIVGRAIASR  260 (518)
Q Consensus       230 ~k~~l~~~~p~~l~~~~~~i~~~i~~~~as~  260 (518)
                      +|-.-.-..|.++++.....-..+.+.+.+.
T Consensus       191 iKln~agvmPiIfassll~~p~~i~~~l~~~  221 (360)
T 2akh_Y          191 LKVNMAGVIPAIFASSIILFPATIASWFGGG  221 (360)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             0127888889999999999999999873224


No 5  
>>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} (A:)
Probab=4.87  E-value=1.8e+02  Score=8.14  Aligned_cols=38  Identities=16%  Similarity=0.016  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCC
Q ss_conf             76568899884222799999985401034677776235
Q gi|254780793|r  145 ASLVTGMLFALGRYFIASIAPIVINVFPIFALTYALWH  182 (518)
Q Consensus       145 ~~~~~~~l~~~~~f~~~a~~~vi~ni~~i~~~~~~~~~  182 (518)
                      ..........++|-+..+..+...++....+.......
T Consensus       110 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  147 (375)
T 2gfp_A          110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL  147 (375)
T ss_dssp             HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf             22221110234412210021101234654465434443


No 6  
>>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 1jvm_A 1s5h_C* 1j95_A 2atk_C* 2nlj_C* 2dwe_C* 2dwd_C* ... (C:)
Probab=3.94  E-value=1.5e+02  Score=8.51  Aligned_cols=49  Identities=14%  Similarity=0.181  Sum_probs=0.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5565566305777753321100000011123221002344443322367
Q gi|254780793|r  257 IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK  305 (518)
Q Consensus       257 ~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~  305 (518)
                      +.+-+-|.+...+...++..+...+.+..+-....+.+++...+.++++
T Consensus        73 ~ttvGyGDi~P~t~~~r~~~i~~~l~g~~~~a~~i~~i~~~l~~~~~~~  121 (122)
T 2ih3_C           73 ATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQER  121 (122)
T ss_dssp             HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7356667888898879999999999999999999999999999998704


No 7  
>>3e86_A Potassium channel protein; non-selective cation channel, membrane protein, tetrameric cation channel family, 2-transmembrane helix channels; 1.60A {Bacillus cereus} PDB: 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A (A:)
Probab=3.79  E-value=1.7e+02  Score=8.24  Aligned_cols=49  Identities=12%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5565566305777753321100000011123221002344443322367
Q gi|254780793|r  257 IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK  305 (518)
Q Consensus       257 ~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~  305 (518)
                      +.+-|-|.+..-+...++......+.+..+-....+.+++...+.+.++
T Consensus        43 ~tTvGyGd~~p~t~~~~~f~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~   91 (96)
T 3e86_A           43 LTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS   91 (96)
T ss_dssp             HTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHG
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9825788877798467999999999999999999999999998899983


No 8  
>>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 2a79_B* (B:321-514)
Probab=3.79  E-value=2.2e+02  Score=7.66  Aligned_cols=54  Identities=7%  Similarity=0.094  Sum_probs=0.0

Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             332025565566305777753321100000011123221002344443322367
Q gi|254780793|r  252 IVGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQK  305 (518)
Q Consensus       252 ~i~~~~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~  305 (518)
                      +....+.+-|.|.++..+...++......+++..+-......++....+.+.++
T Consensus        62 ~~~~tlttvGyGDi~p~t~~e~~~~~~~~l~G~~~~~~~i~~i~~~~~~~~~~~  115 (194)
T 2r9r_B           62 WAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE  115 (194)
T ss_dssp             HHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             468874121476877667676677203889989999999999999999999999


No 9  
>>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} (A:)
Probab=3.45  E-value=1.5e+02  Score=8.54  Aligned_cols=59  Identities=10%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55655663057777533211000000111232210023444433223678999897541
Q gi|254780793|r  257 IASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIE  315 (518)
Q Consensus       257 ~as~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~  315 (518)
                      +.+.|.|.++..+...++......+++..+-......+++...+.|.++-++.-+.--|
T Consensus        96 lttvGyGdi~P~t~~~~~f~~~~~l~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~  154 (155)
T 2a9h_A           96 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK  154 (155)
T ss_dssp             HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------------
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             71167898334788799999999999999999999999999999999999999997416


No 10 
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:291-311,A:394-430)
Probab=3.36  E-value=2.8e+02  Score=7.08  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10023444433223678999897541
Q gi|254780793|r  290 ILPALSRSLRSKNKQKSFELQNQAIE  315 (518)
Q Consensus       290 ~~P~ls~~~~~~d~~~~~~~~~~~~~  315 (518)
                      +.|.+-|.+.+-+.+..++.+.+-++
T Consensus        23 II~~LeRRY~ET~SE~~Re~LekYMs   48 (58)
T 2r6f_A           23 VIPNVERRYRETSSDYIREQXEKYXA   48 (58)
T ss_dssp             HHHHHHHHHHHCCCTTHHHHHGGGEE
T ss_pred             CCCCHHHHHHHHCCHHHHHHHHHHCC
T ss_conf             52327888887307888999986413


Done!