HHsearch results for GI: 254780793 and protein with PDBid: 3mkt_A
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.1e-41 Score=233.02 Aligned_cols=418 Identities=11% Similarity=0.045 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
++.|-+...++..+...+.|++....+++ +|+.+.+ +...+.++.++...+. . +++.+..+..+|+.+++|+|+++
T Consensus 13 ~l~~la~P~~~~~l~~~~~~~vD~~~vg~-lg~~~la-av~~~~~i~~~~~~~~-~-gl~~g~~~lvaq~~G~~~~~~~~ 88 (460)
T 3mkt_A 13 NLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMA-AVSIAASIWLPSILFG-V-GLLMALVPVVAQLNGAGRQHKIP 88 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSS-HHHHHHHHHHHHHHHH-H-HHHHHHGGGCTTTTSSSSTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999875-2889999-9999999999999999-9-99999999999997399989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+..++.+....+.+..+. +.+.+.|++...+. .+++..+.+..+.++..|..++..+....++++|+.++.+++
T Consensus 89 ~~~~~~l~~~~~~~i~~~-~~~~~~~~i~~~~~-----~~~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 162 (460)
T 3mkt_A 89 FEVHQGLILALLVSVPII-AVLFQTQFIIRFMD-----VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHTTCSSCS-----STTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 999999999999999888-99866999999962-----539999998764030100131267889987652045455315
Q ss_pred HHHHHHHHCHHHHHHHHHH-CCCCCCCCCCEEHHHHHHHHHHHHHCCCCCH-HHCCC----CCCCCCCCCCCCCCCHHHH
Q ss_conf 9999854010346777762-3568654432000122111011100023101-21036----5444567754324100013
Q gi|254780793|r 162 SIAPIVINVFPIFALTYAL-WHPSSPQETTYLLAWGVFLSNVVHFWIVYCC-AKNDG----VKLRFQYPRLTHNVKFFLK 235 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~-~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~k~~l~ 235 (518)
...++..++.++....... .....+..++.+.++++..+........... .++.. ...+..++...+..|++.+
T Consensus 163 ~~~~i~~~i~ni~l~~~li~g~~~~~~~~~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHCCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCC
T ss_conf 76432113321221441011465566510789999988889998544677755300111112102102214566542133
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 468887643201202333202556-5566305777753321100000011123221002344443322367899989754
Q gi|254780793|r 236 LTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAI 314 (518)
Q Consensus 236 ~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~ 314 (518)
.+.|..+..........+.+.+.+ .++.++++++.+.++.++.. .+..+++++.-|.+++++++||.++.++..++++
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~~~~-~~~~~l~~a~~~~vg~~~G~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 578278899999999999999987268712259899999999999-9999999999999999872776899999999999
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11344215899999852572311121047864455456666555420105677531232023544331013467778886
Q gi|254780793|r 315 ECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI 394 (518)
Q Consensus 315 ~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~ 394 (518)
+.....+++.+..++.+++++.. +|.. |++..+.....+.+++++.++.+.+......+++.||++.++..++++.
T Consensus 322 ~~~~~~~~~~~~l~~~~~~~i~~-~f~~---d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~ 397 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIAL-LYTE---NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISY 397 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CSSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 84489999999999999999986-2689---8999999999999999999999999999999998674899999999999
Q ss_pred -HHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -89999987520-------21120049999999999999999999997
Q gi|254780793|r 395 -AINLTIAIGSF-------PFIGGYGIALAEVSSSWVNTICLAITLLK 434 (518)
Q Consensus 395 -~vni~l~~~li-------~~~G~~G~a~at~i~~~~~~~~~~~~l~k 434 (518)
++.+++.+++. +.+|..|++++..+++.+.++++.+.+++
T Consensus 398 ~~i~ip~~~~l~~~~~~~~~~~G~~Giw~~~~~~~~~~~~~~~~~l~~ 445 (460)
T 3mkt_A 398 WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998523524469999999999999999999999999