Query gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 518
No_of_seqs 208 out of 3436
Neff 9.1
Searched_HMMs 13730
Date Wed Jun 1 07:05:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780793.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 53.8 3.8 0.00028 14.9 3.9 38 46-83 2-39 (158)
2 d1iwga8 f.35.1.1 (A:513-566,A: 4.9 72 0.0052 8.2 14.7 12 287-298 204-215 (222)
3 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 2.6 1.6E+02 0.011 6.4 2.0 32 284-316 44-75 (119)
4 d1j1va_ a.4.12.2 (A:) Chromoso 2.1 2E+02 0.015 5.8 1.7 23 290-312 48-70 (94)
5 d2fg1a1 c.50.1.2 (A:2-155) Hyp 2.0 2.1E+02 0.015 5.7 1.3 28 288-315 116-143 (154)
6 d1u5sb1 g.39.1.3 (B:72-102) Pi 1.8 1.7E+02 0.013 6.1 -0.8 15 372-386 15-29 (31)
7 d2jb0b1 d.4.1.1 (B:449-572) DN 1.6 2.7E+02 0.02 5.1 0.6 17 292-308 59-75 (124)
8 d1l8qa1 a.4.12.2 (A:290-399) C 1.5 2.9E+02 0.021 4.9 1.1 22 291-312 62-83 (110)
9 d1hyoa1 b.34.8.1 (A:1-118) Fum 1.5 3E+02 0.022 4.9 0.3 12 274-285 14-25 (118)
10 d2gykb1 d.4.1.1 (B:4-133) DNas 1.5 3E+02 0.022 4.9 0.8 17 292-308 62-78 (130)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=53.78 E-value=3.8 Score=14.88 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 97899999997577899999999999844897899999
Q gi|254780793|r 46 YLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRL 83 (518)
Q Consensus 46 ~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~ 83 (518)
++..++..+..-|++.+..+|.+.++.++.+..++...
T Consensus 2 TLIELlVViaIIgILaaia~P~~~~~~~~a~~~~~~~~ 39 (158)
T d2pila_ 2 TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILL 39 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21499999999999999999999999999999999999
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.93 E-value=72 Score=8.17 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.5
Q ss_pred CCCCCHHHHHHH
Q ss_conf 322100234444
Q gi|254780793|r 287 MIVILPALSRSL 298 (518)
Q Consensus 287 ~~~~~P~ls~~~ 298 (518)
+..+.|.+-...
T Consensus 204 ~l~~~Pal~~l~ 215 (222)
T d1iwga8 204 AIFFVPVFFVVV 215 (222)
T ss_dssp TTSSSSSSHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 3
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.59 E-value=1.6e+02 Score=6.36 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 112322100234444332236789998975411
Q gi|254780793|r 284 GAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 284 ~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
.++...++|.+++.+.. ...++++.++.++..
T Consensus 44 ~~itK~LYp~IA~ky~T-T~s~VERaIRhaIev 75 (119)
T d1fc3a_ 44 GSITKVLYPDIAKKYNT-TASRVERAIRHAIEV 75 (119)
T ss_dssp GGTTTTHHHHHHHHHTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 85899979999999599-879999999999999
No 4
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.11 E-value=2e+02 Score=5.80 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10023444433223678999897
Q gi|254780793|r 290 ILPALSRSLRSKNKQKSFELQNQ 312 (518)
Q Consensus 290 ~~P~ls~~~~~~d~~~~~~~~~~ 312 (518)
.+|.+++.++.+|+..+-..+++
T Consensus 48 sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 48 SLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp CHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999589970199999999
No 5
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=2.02 E-value=2.1e+02 Score=5.68 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2210023444433223678999897541
Q gi|254780793|r 288 IVILPALSRSLRSKNKQKSFELQNQAIE 315 (518)
Q Consensus 288 ~~~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518)
+..+|.++-=.+..|++++++.+++.+.
T Consensus 116 sIa~P~Ig~Gi~G~~w~~v~~ii~~~~~ 143 (154)
T d2fg1a1 116 SVHMPRIGCGLAGGKWELMEQIIKEELI 143 (154)
T ss_dssp EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 7996860688889899999999999961
No 6
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.78 E-value=1.7e+02 Score=6.12 Aligned_cols=15 Identities=7% Similarity=-0.228 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 320235443310134
Q gi|254780793|r 372 SLSTAFYAQNDMKAP 386 (518)
Q Consensus 372 i~~~~~~a~g~~~~~ 386 (518)
+..++..|+||++.|
T Consensus 15 I~~~~vtAlgk~WHp 29 (31)
T d1u5sb1 15 IEGRVVNAMGKQWHV 29 (31)
T ss_dssp CCSCEECCTTSBEET
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 163676640564678
No 7
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=1.63 E-value=2.7e+02 Score=5.09 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 02344443322367899
Q gi|254780793|r 292 PALSRSLRSKNKQKSFE 308 (518)
Q Consensus 292 P~ls~~~~~~d~~~~~~ 308 (518)
|.+++.+.+.|..++++
T Consensus 59 peL~~QF~~~N~~rmk~ 75 (124)
T d2jb0b1 59 PELSKQFSRNNNDRMKV 75 (124)
T ss_dssp HHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHCHHHHHHHHC
T ss_conf 99999858888999868
No 8
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=1.54 E-value=2.9e+02 Score=4.93 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0023444433223678999897
Q gi|254780793|r 291 LPALSRSLRSKNKQKSFELQNQ 312 (518)
Q Consensus 291 ~P~ls~~~~~~d~~~~~~~~~~ 312 (518)
+|.+++.++.+|+..+-+..++
T Consensus 62 l~~IG~~fg~rdHsTV~~a~kk 83 (110)
T d1l8qa1 62 LIEIARAFKRKDHTTVIHAIRS 83 (110)
T ss_dssp HHHHHHHSSCCCSTHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999589971099999999
No 9
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.52 E-value=3e+02 Score=4.90 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCC
Q ss_conf 211000000111
Q gi|254780793|r 274 IYSLPVGVIGGA 285 (518)
Q Consensus 274 l~~l~~~i~~~a 285 (518)
+.++|+|+|...
T Consensus 14 iqNLPfGVfs~~ 25 (118)
T d1hyoa1 14 IQNLPYGVFSTQ 25 (118)
T ss_dssp TTTCCEEEEECS
T ss_pred CCCCCEEEEECC
T ss_conf 656873888748
No 10
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=1.51 E-value=3e+02 Score=4.88 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 02344443322367899
Q gi|254780793|r 292 PALSRSLRSKNKQKSFE 308 (518)
Q Consensus 292 P~ls~~~~~~d~~~~~~ 308 (518)
|.+++.+.+.|..++++
T Consensus 62 peL~~QF~~~N~~rmk~ 78 (130)
T d2gykb1 62 PELSKNLNPSNKSSVSK 78 (130)
T ss_dssp TTTGGGSCHHHHHHHHT
T ss_pred HHHHHHHCHHHHHHHHC
T ss_conf 99999858888999868
Done!