RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780793|ref|YP_003065206.1| integral membrane protein MviN
[Candidatus Liberibacter asiaticus str. psy62]
(518 letters)
>gnl|CDD|31072 COG0728, MviN, Uncharacterized membrane protein, putative virulence
factor [General function prediction only].
Length = 518
Score = 279 bits (715), Expect = 1e-75
Identities = 157/507 (30%), Positives = 283/507 (55%), Gaps = 7/507 (1%)
Query: 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIF 60
M ++++ + V ++TL SR LGF+R+ L+AA G G D F+VAF L + RRL AEG F
Sbjct: 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAF 66
Query: 61 HNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFAD 120
++F+P+ ++ K+ G E+A+ S + +L L L+++T++ L P L+R ++APGF +
Sbjct: 67 SSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDE 126
Query: 121 QSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYAL 180
FL + L+R++FP ++FISL++L +L + R+FI + AP+++NV I AL
Sbjct: 127 TDK--FLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIG---LAL 181
Query: 181 WHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPL 240
+ LAWGV + ++ + + G+ ++ ++ +K FLKL P
Sbjct: 182 FLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPA 241
Query: 241 MVTGGIIQISNIVGRAIASR-ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLR 299
++ I QI+ ++ AIAS G +S + YA+R+Y LP+G+ G A+ V+LP+LSR
Sbjct: 242 LLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301
Query: 300 SKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSI 359
+ + + +L + + +P++ L +L++ IV L+ERGAF++++ ++ + L+
Sbjct: 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAA 361
Query: 360 YSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVS 419
YS+G++ L K LS FYA+ D K PMK I+S+ +N+ + + P +G G+ALA
Sbjct: 362 YSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSL 421
Query: 420 SSWVNTICLAITLLKRKQ-INLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTF 478
++WVN + L L KR + ++ IL + +++ +M ++ +
Sbjct: 422 AAWVNALLLYYLLRKRLVYLPGRGWGLFLILKLLLASAIMAAALLALLHLAQREWLLGGL 481
Query: 479 FDPFKNLVIMLSGAMLVYLFSIFLFLG 505
++++L F++ L LG
Sbjct: 482 LLIRLGVLLLLVLLGAGVYFAMLLLLG 508
>gnl|CDD|111867 pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence
gene in Salmonella enterica serovar. Typhimurium greatly
reduces virulence in a mouse model of typhoid-like
disease. Open reading frames encoding homologues of MviN
have since been identified in a variety of bacteria,
including pathogens and non-pathogens and
plant-symbionts. In the nitrogen-fixing symbiont
Rhizobium tropici, mviN is required for motility. The
MviM protein is predicted to be membrane-associated.
Length = 452
Score = 252 bits (647), Expect = 1e-67
Identities = 140/443 (31%), Positives = 245/443 (55%), Gaps = 7/443 (1%)
Query: 28 VAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEI 87
+AA G G + D F VAF + + RRL AEG F ++F+P+F++ K+ + E+A+ +
Sbjct: 1 IAAYFGAGPLADAFNVAFRIPNLLRRLFAEGAFSSAFVPVFAELKQADKDEAAE-FVRRV 59
Query: 88 FSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASL 147
++LI L+++T++ L P +IR + APGF ++ + LT+ L R+ FP ++ +SL+++
Sbjct: 60 STLLIGVLLLVTLLGILAAPWVIRLL-APGFD--AETFSLTVSLLRITFPYLLLVSLSAV 116
Query: 148 VTGMLFALGRYFIASIAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWI 207
+L A ++F + +P+++N+ I L + + +E Y LA GV + V+ +
Sbjct: 117 FGAVLNARKKFFAPAFSPVLLNIGVILTLLFLANYF--GREPIYGLAIGVLIGGVLQLLV 174
Query: 208 VYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASR-ETGIIS 266
+ G+ L+ ++ VK FL L P ++ + Q++ ++ A+AS G IS
Sbjct: 175 QLPFLRKAGLLLKPRFNFRDKGVKRFLALALPTLLGVSVSQLNLLIDTALASFLAEGSIS 234
Query: 267 AIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAV 326
+ YA+RIY LP+G+ G ++ V+LP LSR + + + +L +QAI IP++
Sbjct: 235 YLYYADRIYQLPLGIFGVSVSTVLLPRLSRHAKDGDWDEFLDLLDQAIRLTLLLMIPASF 294
Query: 327 ALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAP 386
L +LS IV LYERGAFS ++ + L+ Y++G++ L K LS FYA+ D K P
Sbjct: 295 GLLVLSDPIVSVLYERGAFSPEDVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTKTP 354
Query: 387 MKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIY 446
K +++S +N+ +++ P +G G+ALA S+W+N + L L KR +
Sbjct: 355 FKISLISAVLNILLSLLLLPPLGVVGLALATSLSAWINLVFLYYILRKRLGGHSLRGWKT 414
Query: 447 RILSVSISAGLMGFFIILFRPYF 469
+ S+ + LMG I+L
Sbjct: 415 FLASLVVPTALMGGVILLLSSLT 437
>gnl|CDD|30880 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 51.8 bits (124), Expect = 4e-07
Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 19/248 (7%)
Query: 231 KFFLKLTFPLMVTGGIIQISNIVGRAIASR-ETGIISAIQYAERIYSLPVGVIGGAMMIV 289
K LKL P+++ + + +V + ++A+ A I+ L + I +
Sbjct: 17 KLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIA-IFIGLGTG 75
Query: 290 ILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQN 349
+++++ + +++K+ + Q + G+ A+ L ++ +++ L ++
Sbjct: 76 TTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLL----GAPAEV 131
Query: 350 TILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVS----IAINLTIAIGSF 405
L + +L I +G +LS LS D K PM ++ I +N + G F
Sbjct: 132 LELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLF 191
Query: 406 PFIGGYGIALAEVSSSWVNTICLAITLLKRKQ---------INLPFKTIYRILSVSISAG 456
+G G ALA V + W+ + L I LL++K+ + K + IL + +
Sbjct: 192 GGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF 251
Query: 457 LMGFFIIL 464
L L
Sbjct: 252 LESLSESL 259
Score = 41.0 bits (96), Expect = 8e-04
Identities = 55/371 (14%), Positives = 130/371 (35%), Gaps = 19/371 (5%)
Query: 73 ENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLS 132
+ ++ + L + L+L L++ +++ PLL + + +Y
Sbjct: 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYL------ 139
Query: 133 RVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYALWHPSSPQETTYL 192
R++ F L+ +++G+L LG ++ N+ I L Y L
Sbjct: 140 RIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNI-VLNYLLIFGLFGGLGVAG 198
Query: 193 LAWGVFLSNVVHF----WIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQ 248
A ++ + + + + + +K L+L P+ +
Sbjct: 199 AALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSES 258
Query: 249 ISN-IVGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSF 307
+ ++ +A T ++A A RI S + + + + + ++L + N +++
Sbjct: 259 LGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAGNYKRAR 317
Query: 308 ELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILAN 367
A++ + A+ L + + I+ + L L I ++ +
Sbjct: 318 RAARLALKLSLLIALLIALLLLLFREPIISLFTT----DPEVIALAVILLLIAALFQPFD 373
Query: 368 ILSKSLSTAFYAQNDMKAPMKFTIVSIAINL--TIAIGSFPFIGGYGIALAEVSSSWVNT 425
+ LS D K P +++S + F F+G G+ + S +
Sbjct: 374 GIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRA 433
Query: 426 ICLAITLLKRK 436
I L + L + +
Sbjct: 434 ILLLLRLRRGR 444
>gnl|CDD|32425 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 44.3 bits (104), Expect = 7e-05
Identities = 76/504 (15%), Positives = 185/504 (36%), Gaps = 30/504 (5%)
Query: 1 MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIF 60
K+I+ L + TL S LG I L+A LG Y + A+
Sbjct: 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFG--LYALALAIIGLFSILADFGL 63
Query: 61 HNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFAD 120
+ ++ +E LS + +L L L++L +++ +L + +
Sbjct: 64 PAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALL---- 119
Query: 121 QSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYAL 180
R++ +++ + L+S++ G+ GR+ +++ +
Sbjct: 120 -----------LRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLF 168
Query: 181 WHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPL 240
+ L G +S +V ++ + R +K L+ PL
Sbjct: 169 AALGL---AVWALVLGAVVSLLVLLILLGKKKRG---LKRPILRFSLALLKELLRFGLPL 222
Query: 241 MVTGGIIQISNIVGRAIASRETGIISAIQY-AERIYSLPVGVIGGAMMIVILPALSRSLR 299
+++ + + + + G Y A + + ++ A+ V+ PALSR+
Sbjct: 223 LLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYA 282
Query: 300 SKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSI 359
+++ +L Q+++ + IP+ + L +L+ I+ L+ + + L +
Sbjct: 283 EGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLF------GEKYASAAPILQL 336
Query: 360 YSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVS 419
++ L L S+ A + + +++S +NL + + P G G A+A S
Sbjct: 337 LALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATAS 396
Query: 420 SSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFF 479
+ + I L+ + + + ++ ++++ + + L
Sbjct: 397 VIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGLLELLVALLLLLLVLLALG 456
Query: 480 DPFKNLVIMLSGAMLVYLFSIFLF 503
L+++++ +++ L + L
Sbjct: 457 ILLFLLLLLIALVLILLLRLLLLK 480
>gnl|CDD|144956 pfam01554, MatE, MatE. The MatE domain.
Length = 161
Score = 30.6 bits (70), Expect = 0.94
Identities = 26/161 (16%), Positives = 65/161 (40%), Gaps = 6/161 (3%)
Query: 239 PLMVTGGIIQISNIVGRAIASR-ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRS 297
P+++ + + +++ ++A+ A I SL + + + + + ++
Sbjct: 1 PIILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASL-IFMFLLGLSTALTTLVGQA 59
Query: 298 LRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFL 357
L + N +++ Q + +P A+ + + + I+ + L S +L
Sbjct: 60 LGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLE----LASKYL 115
Query: 358 SIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINL 398
I ++GI L LS D K P+ ++S+ +N+
Sbjct: 116 RILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNI 156
>gnl|CDD|32784 COG2964, COG2964, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 220
Score = 30.2 bits (68), Expect = 1.4
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 324 SAVALFMLSKEIVQTLYERGAFSSQNTI-LVSSFLSI 359
++ ++EIV+ LYE+G F+ ++ I +V+ L I
Sbjct: 167 RLLSNNAKNREIVKALYEKGIFNLKDAINIVADRLGI 203
>gnl|CDD|33492 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 30.2 bits (68), Expect = 1.5
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 457 LMGFFIILFRPYFNQFSSATTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQ 514
LM F I ++ P F LV++ + LV + LG++FL L +
Sbjct: 507 LMRFLIRVYAPLLE-------FVLKLPKLVLLGAVLSLVASLVLLPKLGREFLPELNE 557
>gnl|CDD|33164 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 28.8 bits (64), Expect = 3.7
Identities = 43/212 (20%), Positives = 72/212 (33%), Gaps = 29/212 (13%)
Query: 87 IFSILILS-LVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLA 145
S++I S +VL +V+ I P+ + I+A S ++ + + + PS +
Sbjct: 83 FVSLVIWSTFLVLLLVLLAIRPVDVSLILAVALV-LSFRFLIVLVSYKNSVPSS-VLPSM 140
Query: 146 SLVTGMLFALGRYFIAS---IAPIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNV 202
+ V L + F+A I P +I+ I L L Y F+ V
Sbjct: 141 NYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASLL----------YGRVLYSFVKVV 190
Query: 203 VHFWIVYCCAKNDGVKLRFQYPRLTHNVK---FFLKLTFPLMVTGGIIQISNIVGRAIAS 259
+ K F L N FFL++ + V +
Sbjct: 191 NRPGVRSLGLKILEFFSNFLGAILESNPSLEEFFLEIGEEVKVPVRVFAF---------- 240
Query: 260 RETGIISAIQYAERIYSLPVGVIGGAMMIVIL 291
R G + A I+ P G +GG + L
Sbjct: 241 RRKGDVKARFVIPDIHPGPFGNVGGGNLPERL 272
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.330 0.142 0.412
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,182,715
Number of extensions: 349500
Number of successful extensions: 1531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1507
Number of HSP's successfully gapped: 131
Length of query: 518
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 420
Effective length of database: 4,146,055
Effective search space: 1741343100
Effective search space used: 1741343100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.2 bits)