RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] (518 letters) >gnl|CDD|162493 TIGR01695, mviN, integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII. Length = 502 Score = 272 bits (698), Expect = 1e-73 Identities = 162/508 (31%), Positives = 279/508 (54%), Gaps = 16/508 (3%) Query: 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFH 61 ++++ L V TL SR GF+R+ ++A+ G G D F VAF + FRRL AEG F+ Sbjct: 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFN 60 Query: 62 NSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQ 121 ++F+P+F++ K+ + A+R + + L++ ++L V++ + + ++APGFAD Sbjct: 61 SAFVPVFTKAKKKE--KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFAD- 117 Query: 122 SDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYALW 181 + L + L+R+MFP ++ ISLA++ G+L A R+FI S +PI+ N+ I +L + W Sbjct: 118 -ETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFFDW 176 Query: 182 HPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLM 241 + Q + L A GV + V I + G L+ ++ +K FLKL P Sbjct: 177 --NYGQYSLAL-AIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTT 233 Query: 242 VTGGIIQISNIVGRAIASR-ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRS 300 + QI+ ++ A+AS E G +SA+ YA RIY LP+G+ G ++ V+LP LSR Sbjct: 234 LGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 Query: 301 KNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIY 360 N + +L NQ I IPS+ L +LS IV L+ERGAFS ++T++ ++ L+ Y Sbjct: 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAY 353 Query: 361 SIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSS 420 +G++ L K L AFYA+ D + P +++S+ +N +++ +G GIALA ++ Sbjct: 354 GLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAA 413 Query: 421 SWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFFD 480 S V+++ L + L +R + LPF + + + I++ ++G + L Sbjct: 414 SMVSSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYLIVSVSLGGVL------ 467 Query: 481 PFKNLVIMLS-GAMLVYLFSIFLFLGKD 507 KNL+ +L+ G + + ++ + L L K Sbjct: 468 -VKNLLGLLAIGLIGLLVYFLGLALLKI 494 >gnl|CDD|162043 TIGR00797, matE, putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS. Length = 342 Score = 38.8 bits (91), Expect = 0.003 Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 354 SSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLT---IAI-GSFPFIG 409 +L I +GI A +L+ L Q D K PM T++ IN+ I I G F F+G Sbjct: 112 QDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLG 171 Query: 410 GYGIALAEVSSSWVNTICLAITLLKRKQINL--------PFKTIYRILSVSISAGLMGFF 461 G ALA V S W+ + L + K K+I L ++ + R+L + + Sbjct: 172 IVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVIL 231 Query: 462 IIL 464 L Sbjct: 232 ESL 234 >gnl|CDD|163065 TIGR02900, spore_V_B, stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree. Length = 488 Score = 36.5 bits (85), Expect = 0.016 Identities = 85/450 (18%), Positives = 166/450 (36%), Gaps = 51/450 (11%) Query: 78 ESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFP 137 SA+ I IL +SL+ + ++ ++ F+++P A K ++ V+ P Sbjct: 67 ASAKNDRKNIKKILKVSLIFTLIWSLIVTAIV--FLLSPFIASTLLKDERSLYSLLVICP 124 Query: 138 SIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIF--ALTYALWHPSSPQETTYLLAW 195 ++ FI+L+S++ G + + ++ + I AL + + P + Sbjct: 125 AMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYL 184 Query: 196 GVFLSNVVHFWIVYCCAK-NDGVKLRFQYPRLTHNVKFFLK----LTFPLMVTGGIIQIS 250 + L +V +Y K +RF + K L ++ PL ++ I + Sbjct: 185 SLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLL 244 Query: 251 NI--------------VGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSR 296 V A+ G +S A + + P VI ++ ++P +S Sbjct: 245 YFLETLLVPQRLVIAGVTYREATSLYGKLSG--MAMPLLTFPA-VITSSLSTALVPDISE 301 Query: 297 SLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSF 356 ++ KN + NQAI+ G+ + V L ++ E+ Y R + +L SF Sbjct: 302 AMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIRVLAPSF 361 Query: 357 LSIYSIGILANILSKSLSTAFYAQNDMKAPMKFT-IVSIA-INLTIAIGSFPFIGGYGIA 414 +Y L +IL K ++ + I +I I L + S P I YG A Sbjct: 362 PFLYFSAPLQSILQ--------GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYA 413 Query: 415 LAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSS 474 + + +S + TI + K +I + + I + + Sbjct: 414 ITFIITSVLVTILNLAEIKKNIRITIDLSDFLIFALLGIL----VYLGLSLL-----KYI 464 Query: 475 ATTFFDPFKNLVIMLSGAMLVYLFSIFLFL 504 L+I++ G FS+++ L Sbjct: 465 IFNPNILINLLLIIILG------FSLYILL 488 >gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase. Length = 403 Score = 29.2 bits (65), Expect = 2.7 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 15/82 (18%) Query: 394 IAINLTIAIGSFPFIGGYGIALAEVSS-----SWVNTI-----CLAITLLKRKQINLPFK 443 I+ + IA +F F+GG ++S +W T C+AIT+L K ++ P Sbjct: 273 ISFSGVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWP-- 330 Query: 444 TIYRILSVSISAGLMGFFIILF 465 + L SI+ G + FF +F Sbjct: 331 ---QSLFSSIAFGFLNFFGSVF 349 >gnl|CDD|184034 PRK13405, bchH, magnesium chelatase subunit H; Provisional. Length = 1209 Score = 28.1 bits (63), Expect = 5.6 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Query: 106 LPLLIRFIIAPGFADQSDKYFLTIQ 130 LP ++RFI PG A YFLT+Q Sbjct: 155 LPKILRFI--PGTAQDVRAYFLTLQ 177 >gnl|CDD|178898 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed. Length = 346 Score = 28.1 bits (64), Expect = 6.3 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 6/22 (27%) Query: 120 DQSDKYFL-TI---QLSRVMFP 137 DQS YFL + QL++++FP Sbjct: 143 DQS--YFLYQLTQEQLAKLLFP 162 >gnl|CDD|151619 pfam11177, DUF2964, Protein of unknown function (DUF2964). This family of proteins with unknown function appears to be restricted to Proteobacteria. Length = 62 Score = 27.7 bits (62), Expect = 6.6 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 133 RVMFPSI-IFISLASL---VTGMLFALGRYFIASIAPIVINV 170 R++ +I +FI+LA + + G+LF L R F + ++I V Sbjct: 7 RIVLATIAVFIALAGIAGVIHGLLFDLERAFRYGVIALIIGV 48 >gnl|CDD|162057 TIGR00832, acr3, arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. Length = 328 Score = 27.7 bits (62), Expect = 6.9 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 10/93 (10%) Query: 96 VVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFAL 155 + +V++ L +PL+ + + + + + P + L ++V +LFA Sbjct: 176 IAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIV--LLFAF 233 Query: 156 -GRYFIASI-------APIVINVFPIFALTYAL 180 G I P++I + +F LT+AL Sbjct: 234 QGETIIELPLDIALIAIPLLIYFYIMFFLTFAL 266 >gnl|CDD|130174 TIGR01104, V_PPase, vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants. Length = 697 Score = 27.4 bits (61), Expect = 8.2 Identities = 16/44 (36%), Positives = 19/44 (43%) Query: 387 MKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTICLAI 430 K I+ I I SF F G YGIA+A + LAI Sbjct: 392 YKSVIIPIFAIAASIIVSFSFAGMYGIAMAALGMLSTAGTGLAI 435 >gnl|CDD|179593 PRK03557, PRK03557, zinc transporter ZitB; Provisional. Length = 312 Score = 27.4 bits (61), Expect = 8.3 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 159 FIASIAPIVINVFPIFALTYALWHPSSPQETTYLL-AWGVFLSNVVHFWIVY 209 F+ +IA +VI + ++ P + A L+N++ FW+++ Sbjct: 92 FVNAIALVVITILIVWEAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLH 143 >gnl|CDD|185579 PTZ00370, PTZ00370, STEVOR; Provisional. Length = 296 Score = 27.3 bits (61), Expect = 8.9 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 18/107 (16%) Query: 10 VCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFS 69 +C+ +LGS L I L AA K + +A + T + ++ IF+ Sbjct: 176 ICSCSLGSALLTLI--GLAAA-----KAAAIALIASFGTSYSKCASSISIFNMLSEESII 228 Query: 70 QEKENNGSESAQRLSSEI----------FSILILSLVVLTVVVELIL 106 + G L+ + I L L++L VV+ +IL Sbjct: 229 SALKAGGVTCVSGLAGTAASAASSAFYPYGIAALVLLILAVVL-IIL 274 >gnl|CDD|177916 PLN02277, PLN02277, H(+) -translocating inorganic pyrophosphatase. Length = 730 Score = 27.5 bits (61), Expect = 9.0 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%) Query: 454 SAGLMGFFIILFRPYFNQFSSATTFFDPFKNLVIM--------LSGAMLVYLFSIF 501 SA L F +LF Y ++ S+ PFK + I L G+ML++LFS + Sbjct: 509 SAALASF--LLFSAYMDEVSAFAGV--PFKEVDIAIPEVFVGGLLGSMLIFLFSAW 560 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.330 0.142 0.412 Gapped Lambda K H 0.267 0.0726 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,346,780 Number of extensions: 559551 Number of successful extensions: 1841 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1820 Number of HSP's successfully gapped: 111 Length of query: 518 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 420 Effective length of database: 3,876,889 Effective search space: 1628293380 Effective search space used: 1628293380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 59 (26.5 bits)