RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780793|ref|YP_003065206.1| integral membrane protein MviN
[Candidatus Liberibacter asiaticus str. psy62]
(518 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 52.3 bits (125), Expect = 3e-07
Identities = 89/554 (16%), Positives = 153/554 (27%), Gaps = 249/554 (44%)
Query: 15 LGSRFLGFI------------------------RETL-------VAATL------GVGKV 37
L +FLG++ L +AA L + K
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 38 TDVFYVAFYLTFIFRRLAAEGI--FHNSFIPLFSQEKEN------------NGSESAQRL 83
++ + R +A NS LF E N + + L
Sbjct: 120 KELI-KNYITA---RIMAKRPFDKKSNSA--LFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 84 SSEIFSI---LILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYF---LTIQ--LSR-- 133
+++ L+ L+ + L I ++K F L I L
Sbjct: 174 R-DLYQTYHVLVGDLI------KFSAETLSELIRTT---LDAEKVFTQGLNILEWLENPS 223
Query: 134 ------------VMFPSIIFISLAS-LVTGMLFALG------RYFIASIAP----IVINV 170
+ P I I LA +VT LG R ++ +V
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQGLVT-- 279
Query: 171 FPIFALTYALWHPSSPQETTYLLAWGVFLSNV-----VHFWIVYCCAKNDGVKLRFQ--Y 223
A+ A + + W F +V V F+I GV R Y
Sbjct: 280 ----AVAIA----ET---DS----WESFFVSVRKAITVLFFI--------GV--RCYEAY 314
Query: 224 PRLTHNVKFFLKLTFPLMV----TGG------IIQISNIVGRAIASRET--GIISAI-QY 270
P + L P ++ ++ ISN+ ++E ++ +
Sbjct: 315 PNTS--------LP-PSILEDSLENNEGVPSPMLSISNL------TQEQVQDYVNKTNSH 359
Query: 271 ---AERIY-SLPVGVIGGAMMIVI------LPALSRSLRSKNKQKSFELQNQAIECISFF 320
+++ SL + GA +V+ L L+ +LR K K S Q++
Sbjct: 360 LPAGKQVEISL----VNGAKNLVVSGPPQSLYGLNLTLR-KAKAPSGLDQSR-------- 406
Query: 321 GIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSI-------Y----SIGILANIL 369
IP FS + + FL + S I +++
Sbjct: 407 -IP---------------------FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 370 SKSLSTAFYAQNDMKAPMK--FTIVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTIC 427
++S + D++ P+ F G L +S S I
Sbjct: 445 KNNVS---FNAKDIQIPVYDTFD---------------------GSDLRVLSGSISERIV 480
Query: 428 LAITLLKRKQINLP 441
I R +
Sbjct: 481 DCII---RLPVKWE 491
Score = 46.9 bits (111), Expect = 1e-05
Identities = 63/364 (17%), Positives = 104/364 (28%), Gaps = 163/364 (44%)
Query: 7 FLTVCASTLGSRFLGF----IRETLVAATLG--VGKVTDVFYVA-------FY------L 47
++ + LGF +R L AT G G VT V +A F+ +
Sbjct: 249 YVVTA------KLLGFTPGELRSYLKGAT-GHSQGLVTAVA-IAETDSWESFFVSVRKAI 300
Query: 48 TFIFRRLAAEG--IFHNSFI-PLFSQEKENNGSESAQRLSSEIFSILILSLVVLT----- 99
T +F + + N+ + P ++ N E S + SI L+ +
Sbjct: 301 TVLFF-IGVRCYEAYPNTSLPPSILEDSLENN-EGV---PSPMLSISNLTQEQVQDYVNK 355
Query: 100 ----------VVVELI-----------------LPLLIRFIIAPGFADQSDKYFLTIQLS 132
V + L+ L L +R AP DQ S
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ----------S 405
Query: 133 RVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVF-PIFALTYALWHPSSPQETTY 191
R+ F R N F P+ +SP +
Sbjct: 406 RIPFSE------------------R------KLKFSNRFLPV----------ASPFHSHL 431
Query: 192 LL-AWGVFLSNVVHFWI----------VYCCAKNDGVKLRFQY-----PRL-----THNV 230
L+ A + ++V + VY DG LR R+ V
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDGSDLR-VLSGSISERIVDCIIRLPV 488
Query: 231 KFFLKLTFPLMVT-------GGIIQISNIVGRAIASRE-TGIISAIQYAERIYSLPVGVI 282
K+ F T GG + + R +++ TG+ R+ ++
Sbjct: 489 KWETTTQFK--ATHILDFGPGGASGLGVLTHR---NKDGTGV--------RV------IV 529
Query: 283 GGAM 286
G +
Sbjct: 530 AGTL 533
Score = 41.5 bits (97), Expect = 4e-04
Identities = 64/387 (16%), Positives = 107/387 (27%), Gaps = 143/387 (36%)
Query: 142 ISLASLV-TGMLFALGRY---FIASIAPIVINVFPIFALTYALWH---PSSPQETTYLLA 194
+ LV T F + F + T P++P E L+
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILP----------EPTEGFAADDEPTTPAE---LVG 62
Query: 195 WGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQISNIVG 254
FL V G Q+ ++ + L F G ++I
Sbjct: 63 --KFLGYVSS----LVEPSKVG-----QFDQV---LNLCLT-EFENCYLEG----NDI-- 101
Query: 255 RAIASR----ETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFEL- 309
A+A++ + + + Y + AL R++ N +L
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN----AQLV 157
Query: 310 -----QNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGI 364
Q + F +E+ + LY+ + LV I
Sbjct: 158 AIFGGQGNTDDY------------F---EEL-RDLYQ--TYHV----LVGDL--IKFSAE 193
Query: 365 LANILSKSLSTA--FYAQ---------NDMKAPMKFTIVSIAINLTIAIGSFPFIG---- 409
+ L ++ A + Q N P K ++SI I S P IG
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-------SCPLIGVIQL 246
Query: 410 -------------------------GY--GI----ALAEVSSSW----VNTICLAITLL- 433
G+ G+ A+A + SW V+ AIT+L
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVR-KAITVLF 304
Query: 434 ---KRKQINLPFKTI-YRILSVSISAG 456
R P ++ IL S+
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENN 331
Score = 29.1 bits (65), Expect = 2.5
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 40/130 (30%)
Query: 5 RNFLTVCA---STLGSRFLGF---IRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEG 58
+N V + +L G +R+ + L ++ F R+L
Sbjct: 375 KNL--VVSGPPQSL----YGLNLTLRKAKAPSGLDQSRIP----------FSERKLK--- 415
Query: 59 IFHNSFIPLF----SQEKENNGSESAQRLSSEIFSILILSLVV----------LTVVVEL 104
F N F+P+ S + L S + + L V+
Sbjct: 416 -FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 105 ILPLLIRFII 114
I ++ II
Sbjct: 475 ISERIVDCII 484
Score = 28.0 bits (62), Expect = 5.5
Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 41/126 (32%)
Query: 379 AQNDMKAPMKFTIVSIAI----NLTIAIGSFPFIGGYGIALAEVSSSWV-NTICLAITLL 433
A N K F+I+ I I NLTI G G G + E S+ + TI L
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFG-----GEKGKRIRENYSAMIFETIVDG--KL 1701
Query: 434 KRKQINLPFKTI------YRILSVSISAGLMGFFIILFRPYFNQFSSATTFFDPFKNLVI 487
K ++I FK I Y S GL+ SAT F P L +
Sbjct: 1702 KTEKI---FKEINEHSTSYTFRS---EKGLL---------------SATQFTQP--ALTL 1738
Query: 488 MLSGAM 493
M A
Sbjct: 1739 MEKAAF 1744
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter)
MATE-like MDR efflux...; multidrug transporter,
cation-bound, transport protein; 3.65A {Vibrio cholerae}
PDB: 3mku_A
Length = 460
Score = 38.2 bits (88), Expect = 0.005
Identities = 28/242 (11%), Positives = 63/242 (26%), Gaps = 16/242 (6%)
Query: 203 VHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASRET 262
+ K + Q L + + L + + ++ + S
Sbjct: 214 IVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVV 273
Query: 263 GIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISFFGI 322
+ + IG A+ I + L ++ + + N +
Sbjct: 274 AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE----QDTKGAAIAANVGLMTGLATAC 329
Query: 323 PSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQND 382
+A+ + ++I E + L L +I + + + + D
Sbjct: 330 ITALLTVLFREQIALLYTE----NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385
Query: 383 MKAPMKFTIVS-------IAINLTIAIGSFPF-IGGYGIALAEVSSSWVNTICLAITLLK 434
M A T +S L + +G G L + + L L
Sbjct: 386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445
Query: 435 RK 436
+
Sbjct: 446 LQ 447
Score = 28.2 bits (62), Expect = 4.4
Identities = 35/277 (12%), Positives = 90/277 (32%), Gaps = 5/277 (1%)
Query: 225 RLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIASR-ETGIISAIQYAERIYSLPVGVIG 283
R +KL P+++ V +A ++A+ A I+ + G
Sbjct: 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFG 64
Query: 284 GAMMIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERG 343
+++ ++P +++ + + K +Q + +P +A+ ++ I++ +
Sbjct: 65 VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPI-IAVLFQTQFIIRFMDVEE 123
Query: 344 AFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIG 403
A +++ + + + +L L + M +++I +N G
Sbjct: 124 AMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYG 183
Query: 404 SFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFII 463
F G+ ++ + L ++ L+ F +
Sbjct: 184 KFGAPELGGVGCGVATAIVYWIMXXXXXFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243
Query: 464 LFRPYFNQFSSATTFFDPFKNLVIMLSGAMLVYLFSI 500
F F T F L++ G+ +V +
Sbjct: 244 GFPVAAALFFEVTLFA--VVALLVAPLGSTVVAAHQV 278
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.4 bits (80), Expect = 0.035
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 369 LSKSLSTAFYAQNDMKAPMKFTIVSIAINLTI 400
L SL YA D AP ++AI T+
Sbjct: 25 LQASLK--LYA--DDSAP------ALAIKATM 46
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Length = 315
Score = 31.8 bits (72), Expect = 0.39
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 77 SESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYF--LTIQLSRV 134
+ S I + L L+V+ + + + ++ + A S + ++
Sbjct: 34 GQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVW 93
Query: 135 MFPSIIFISLASLVTGMLFALGRY--FIASIAPIVINV 170
P +I I LA L AL PI I V
Sbjct: 94 TVPILIIIFLAVLTWKTTHALEPSKPLAHDEKPITIEV 131
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens}
Length = 488
Score = 29.1 bits (64), Expect = 2.3
Identities = 12/61 (19%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 348 QNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAI-NLTIAIGSFP 406
+++ ++ L+I + IL N+L + A + ++++ + +VS+A ++ + + + P
Sbjct: 20 GSSVYITVELAIAVLAILGNVL---VCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76
Query: 407 F 407
F
Sbjct: 77 F 77
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.330 0.142 0.412
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,160,121
Number of extensions: 186555
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 37
Length of query: 518
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 421
Effective length of database: 3,341,562
Effective search space: 1406797602
Effective search space used: 1406797602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.1 bits)