BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780793|ref|YP_003065206.1| integral membrane protein MviN
[Candidatus Liberibacter asiaticus str. psy62]
         (518 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/518 (100%), Positives = 518/518 (100%)

Query: 1   MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIF 60
           MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIF
Sbjct: 1   MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIF 60

Query: 61  HNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFAD 120
           HNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFAD
Sbjct: 61  HNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFAD 120

Query: 121 QSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYAL 180
           QSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYAL
Sbjct: 121 QSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYAL 180

Query: 181 WHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPL 240
           WHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPL
Sbjct: 181 WHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPL 240

Query: 241 MVTGGIIQISNIVGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRS 300
           MVTGGIIQISNIVGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRS
Sbjct: 241 MVTGGIIQISNIVGRAIASRETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRS 300

Query: 301 KNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIY 360
           KNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIY
Sbjct: 301 KNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIY 360

Query: 361 SIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSS 420
           SIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSS
Sbjct: 361 SIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSS 420

Query: 421 SWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFFD 480
           SWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFFD
Sbjct: 421 SWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSSATTFFD 480

Query: 481 PFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIRK 518
           PFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIRK
Sbjct: 481 PFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIRK 518


>537021.9.peg.476_1 
          Length = 241

 Score =  297 bits (760), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 188/238 (78%), Gaps = 4/238 (1%)

Query: 1   MKIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAA--EG 58
           MK++RNF T+ AS   +R LGF+R +L+AA  GVGK+TD FY   Y+ FIF RLAA  +G
Sbjct: 3   MKLVRNFFTLVASESVNRCLGFVRASLMAAVFGVGKITDAFYTVAYVEFIFVRLAARGDG 62

Query: 59  IFHNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGF 118
           + HNSFIP+FSQ +E NGSE+A RLSSE+FS+L+  L+V+ +V+EL+LPLL+R+++APGF
Sbjct: 63  VIHNSFIPMFSQRREQNGSENAWRLSSEVFSVLLPILMVMIMVIELVLPLLVRYVMAPGF 122

Query: 119 ADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTY 178
             QSD+YFLT+QLSRV+ PSI FISLASLVTG+LFA GRYFIA +  +VI++ PIF LTY
Sbjct: 123 PYQSDEYFLTVQLSRVVMPSIFFISLASLVTGILFASGRYFIACMPSMVIHILPIFVLTY 182

Query: 179 ALWHPSSPQ--ETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFL 234
           AL + S+    E  YLL WGVFL++ V+FWI+Y  AK  GV+LRFQYPRLT NVK FL
Sbjct: 183 ALCYGSNMHKAEMIYLLCWGVFLAHAVYFWILYLSAKKSGVELRFQYPRLTCNVKLFL 240


>537021.9.peg.477_1 
          Length = 235

 Score =  278 bits (710), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/232 (62%), Positives = 181/232 (78%), Gaps = 2/232 (0%)

Query: 287 MIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFS 346
           M  +LP LS +++ +NKQ+S EL+N+AIE + FFGIP    L ML KEI+QTLYERGAF+
Sbjct: 1   MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60

Query: 347 SQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFP 406
           +Q+TILVSS+LSIYS  I+  +LS+ L + FYA+ND+K P KF I+SI +   IAIG FP
Sbjct: 61  AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120

Query: 407 FIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFR 466
           FIGGYGIA AEVS  WVNTICLA+ LLKR+QI+LPF+TIYRILS+ IS+GLMG FI+ F+
Sbjct: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180

Query: 467 P-YFNQFSSATTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIR 517
           P  FNQ  SA T F PFKNL I+LSGA+LVYL SI L LGK FL+ L+  ++
Sbjct: 181 PCLFNQL-SAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLK 231


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 25.8 bits (55), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 123 DKYFLTIQLSRVMFPSIIFISLA 145
           D+YFL I  SR+  P   F+ +A
Sbjct: 303 DRYFLHINGSRIEMPQAFFMRVA 325


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 25.0 bits (53), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 423 VNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFN 470
           V  I +A T+L  + + +  KT Y+++  SIS G +   II  + YF+
Sbjct: 45  VQDIDIATTILPDRVMRIFSKTRYKVIPTSISYGTIK--IICRKKYFD 90


>gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 346

 Score = 24.3 bits (51), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 314 IECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNT 350
           I  I F G P  VA +M+S   ++   +   F+ QN+
Sbjct: 138 ITLIGFCGAPWTVASYMISGGFIKDHGQNRVFAYQNS 174


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.142    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,987
Number of Sequences: 1233
Number of extensions: 12080
Number of successful extensions: 62
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 11
length of query: 518
length of database: 328,796
effective HSP length: 78
effective length of query: 440
effective length of database: 232,622
effective search space: 102353680
effective search space used: 102353680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 40 (20.0 bits)