HHsearch alignment for GI: 254780794 and conserved domain: COG0162
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.94 E-value=6.1e-25 Score=187.96 Aligned_cols=284 Identities=20% Similarity=0.191 Sum_probs=180.3
Q ss_pred CCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCC--HHHHHHHHH----HHHHHHH-HCCC
Q ss_conf 887896015896-7810557988999999985059958999731157307898--589999999----9999999-6286
Q gi|254780794|r 5 DNLFVSGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV--QENLRYQSR----LFVASFL-AAGV 76 (355)
Q Consensus 5 ~~~vltG~~PtG-~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~--~~~~~~~~~----~~~~~~l-A~Gl 76 (355)
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aG-h~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~ 109 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAG-HKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGK 109 (401)
T ss_pred CCEEEEEECCCCCCCCHHHHHH-HHHHHHHHHCC-CEEEEEECCCCEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 9449995378987533666899-99999999879-918999644402427988888887530499999999999999623
Q ss_pred CCC-CCEEEECCCHHHH---HHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHH
Q ss_conf 811-1236524740788---999999851053677520122112332011101346641111466543565286601112
Q gi|254780794|r 77 DPS-RNIIFKQSDVGYH---ADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVG 152 (355)
Q Consensus 77 dp~-k~~if~QS~v~e~---~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG 152 (355)
T Consensus 110 ~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~--~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG 187 (401)
T COG0162 110 FLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLE--REQGISFTEFNYPLLQAYDFVYLNKDLQLGG 187 (401)
T ss_pred CCCCCEEEEECHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHCCCHHCCC
T ss_conf 47766699965687576989999999986720999997544888860--6899752554468898887999745231187
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 1212689999999999987614011000001232111345743143223475643033567741113213455-------
Q gi|254780794|r 153 EDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSS------- 225 (355)
Q Consensus 153 ~DQ~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~------- 225 (355)
T Consensus 188 ~DQ~~ni~~grdl~rr~g~--~-----------~~~~l---t~PL-----------L~~ld-G~-KmgKs~~~a~~~~s~ 238 (401)
T COG0162 188 SDQWGNILAGRDLIRRLGQ--K-----------KVVGL---TTPL-----------LTGLD-GK-KMGKSEGGAVWLDSE 238 (401)
T ss_pred HHHHHHHHHHHHHHHHHCC--C-----------CEEEE---EECC-----------CCCCC-CC-CCCCCCCCCEECCCC
T ss_conf 6789999999999998089--9-----------72899---8355-----------03898-88-156667786770378
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCC--CCC---C-CCC--CC-CCC-----CHHH-HCCCC-CCCCHHHHHHHH-
Q ss_conf 445200145388999998752001223346--434---5-566--87-634-----3133-11222-225288899986-
Q gi|254780794|r 226 DFSRINLLDNPDIIAKKIQKAKTDGDVLPS--EVS---G-LEN--RL-EAK-----NLIE-IFATM-RQIKIEEALKQF- 288 (355)
Q Consensus 226 ~~s~I~l~D~~e~I~kKI~ka~TDs~~~~~--~~~---~-~~~--~~-~v~-----~Ll~-ifs~~-~~~~~~e~~~~~- 288 (355)
T Consensus 239 ~~Sp~~~yq~~~~i~D~~~~~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F~ 318 (401)
T COG0162 239 KTSPYDFYQYWMNIEDADVKRFLKLLTFLSLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLFS 318 (401)
T ss_pred CCCCHHHHHCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 89707555157327598999998875758858999999986248776789998877866752588999999999999984
Q ss_pred -C---CCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -7---999899989-----99999999833799999999827
Q gi|254780794|r 289 -G---GKNFSQFKL-----ALADAVIEEIVPISQKIQHLLKD 321 (355)
Q Consensus 289 -g---~~~~gdlK~-----~Lae~I~~~L~PIRer~~~l~~d 321 (355)
T Consensus 319 ~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i~~ 360 (401)
T COG0162 319 EGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLIQQ 360 (401)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 578354897998554167799999984461129999752315