HHsearch alignment for GI: 254780794 and conserved domain: PRK05912
>PRK05912 tyrosyl-tRNA synthetase; Validated.
Probab=99.89 E-value=2.4e-21 Score=163.78 Aligned_cols=254 Identities=22% Similarity=0.273 Sum_probs=171.0
Q ss_pred CCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCC----------HHHHHHHHHHHHHHHHH
Q ss_conf 8878960158967-810557988999999985059958999731157307898----------58999999999999996
Q gi|254780794|r 5 DNLFVSGVQPTGV-LHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV----------QENLRYQSRLFVASFLA 73 (355)
Q Consensus 5 ~~~vltG~~PtG~-~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~----------~~~~~~~~~~~~~~~lA 73 (355)
T Consensus 32 ~~~~y~G~DPTa~sLH~Ghlv~-l~~L~~fq~~G-h~~i~lvGg~T~~IGDPSGk~~~R~~l~~e~i~~N~~~i~~q~~~ 109 (402)
T PRK05912 32 PLRIKLGFDPTAPDLHLGHLVV-LLKLRRFQDLG-HKPIFLIGDFTGMIGDPSGKSATRKLLTREQVLENAETYKEQLFK 109 (402)
T ss_pred CEEEEEEECCCCCCCCHHHHHH-HHHHHHHHHCC-CCEEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8079981469987520652999-99999999869-964999677524501899986556688999999999999999998
Q ss_pred CCC-CCCCCEEEECCCHHH---HHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCE
Q ss_conf 286-811123652474078---8999999851053677520122112332011101346641111466543565286601
Q gi|254780794|r 74 AGV-DPSRNIIFKQSDVGY---HADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHV 149 (355)
Q Consensus 74 ~Gl-dp~k~~if~QS~v~e---~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~V 149 (355)
T Consensus 110 ~-l~~~~~~~i~~N~~W~~~~~~~dflr-~g~~~~v~~Ml~rd~v~~R--l~~~~gis~~EF~Y~llQayDf~~L~~~lq 185 (402)
T PRK05912 110 I-LGDPEKTEIRNNSEWLGKLNAIDFLR-LGSHFTVARMLERDDFKKR--YKSEQPISIHEFLYPLLQGYDSVALNADLE 185 (402)
T ss_pred H-CCCCCCEEEEEHHHHHCCCCHHHHHH-HHHHCCHHHHHHHHHHHHH--HHCCCCEEEEEEHHHHHHHHHHHHHCCCEE
T ss_conf 7-18987659971278656442899999-8613629999867899998--716997278741377887665775403347
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11212126899999999999876140110000012321113457431432234756430335677411132134554452
Q gi|254780794|r 150 PVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSR 229 (355)
Q Consensus 150 pVG~DQ~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~ 229 (355)
T Consensus 186 iGGsDQwgNi~~G~dLir~~~~~----------------~~~glT~PLLt-----------~~-dG~K~gsKS~g---na 234 (402)
T PRK05912 186 LGGTDQWFNILVGRDLQRRYGQE----------------PQFGLTMPLLT-----------GL-DGVKKMSKSLG---NY 234 (402)
T ss_pred EECHHHHHHHHHHHHHHHHHCCC----------------CCEEEEECCEE-----------CC-CCCCCCCCCCC---CC
T ss_conf 73054899999899999985689----------------83799845057-----------78-76843566799---87
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 00145388999998752001223346434556687634313311222225288899986-79998999899999999983
Q gi|254780794|r 230 INLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF-GGKNFSQFKLALADAVIEEI 308 (355)
Q Consensus 230 I~l~D~~e~I~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~-g~~~~gdlK~~Lae~I~~~L 308 (355)
T Consensus 235 IwLd~sp~~~yq~~~n~-~D~d--------------v~~ylklfT~l~~~eI~~l~~~~~~~p~~r~aqk~LA~Evt~lv 299 (402)
T PRK05912 235 IWLDESPYEMYQKWMNI-PDAL--------------VWRYLELLTFLSLEEIAALEEEVAEGANPREAKKVLAEEITALF 299 (402)
T ss_pred EECCCCHHHHHHHHHCC-CHHH--------------HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 01789989999999638-7889--------------99999996459999999999975502443458999999999985
Q ss_pred HH
Q ss_conf 37
Q gi|254780794|r 309 VP 310 (355)
Q Consensus 309 ~P 310 (355)
T Consensus 300 HG 301 (402)
T PRK05912 300 HG 301 (402)
T ss_pred CC
T ss_conf 59