HHsearch alignment for GI: 254780794 and conserved domain: PRK08560

>PRK08560 tyrosyl-tRNA synthetase; Validated.
Probab=100.00  E-value=0  Score=533.96  Aligned_cols=288  Identities=20%  Similarity=0.214  Sum_probs=238.2

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             8887896015896781055798899999998505995899973115730-789858999999999999996286811123
Q gi|254780794|r    4 SDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAIT-NNIVQENLRYQSRLFVASFLAAGVDPSRNI   82 (355)
Q Consensus         4 ~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt-~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~   82 (355)
T Consensus        29 ~~~rv~~G~~PTG~lHLGh~v~~~k-~~~lQd~-g~~~~~~IaD~hA~i~~~~~~~~~r~~~~~~~~~~~A~GlDp~k~~  106 (333)
T PRK08560         29 EEPKAYIGFEPSGFIHLGHLVTMNK-LADLQKA-GFKVTVLLADWHAWLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE  106 (333)
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHC-CCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             9988996617898453899999999-9999977-9918999613223338999999999999999999997078964239


Q ss_pred             EEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
Q ss_conf             65247407889999998510536775201221123320111013466411114665435652866011121212689999
Q gi|254780794|r   83 IFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEIT  162 (355)
Q Consensus        83 if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hielt  162 (355)
T Consensus       107 i~~qS~~~~~~e~~~~~~~l~~~~tl~r~~~~~~~~~~~~~~~~~~g~~~YPvlQaaDil~~~adi~~~G~DQ~~~~~L~  186 (333)
T PRK08560        107 FVLGSEFQLDPEYWLLVLKLAKNTTLARARRSMTIMGRKMEEPIDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKAHMLA  186 (333)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             99898624675699999998064739999887888755058997531231427765068752799553154308999999


Q ss_pred             HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             99999998761401100000123211134574314322347564303356774111321345544520014538899999
Q gi|254780794|r  163 RLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKK  242 (355)
Q Consensus       163 RdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~kK  242 (355)
T Consensus       187 Rdia~rf~~~~p-------------~~l~~p~l~---------gl~g~~~~~~~~KMSkS~~--~~~I~l~D~~~~i~kK  242 (333)
T PRK08560        187 REVLPKLGYKKP-------------VAIHTPLLT---------GLDGGGEVLAEIKMSKSKP--GSAIFVHDSPEEIRRK  242 (333)
T ss_pred             HHHHHHCCCCCC-------------EEEECCCCC---------CCCCCCCCCCCCCCCCCCC--CCCEEECCCHHHHHHH
T ss_conf             999998399997-------------575257545---------6878777799886788999--9947415899999999


Q ss_pred             HHHHHCCCCCCCCCC---------CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             875200122334643---------4556687634313311222225288899986--79998999899999999983379
Q gi|254780794|r  243 IQKAKTDGDVLPSEV---------SGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALADAVIEEIVPI  311 (355)
Q Consensus       243 I~ka~TDs~~~~~~~---------~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~--g~~~~gdlK~~Lae~I~~~L~PI  311 (355)
T Consensus       243 I~~a~~~~~~~~~npv~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~eel~~~y~~g~~~~~dlK~~lae~i~~~L~Pi  322 (333)
T PRK08560        243 IKKAYCPPGEVEGNPVLEIAKYHIFPEYDEIVIERPEKYGGDLEYESYEELERDYAEGKLHPLDLKNAVAEYLIEILEPV  322 (333)
T ss_pred             HHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             98565899876788731133468732666544035765067777688999999986599798999999999999987899


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780794|r  312 SQKIQH  317 (355)
Q Consensus       312 Rer~~~  317 (355)
T Consensus       323 Re~~~e  328 (333)
T PRK08560        323 RKYLEE  328 (333)
T ss_pred             HHHHHH
T ss_conf             999862