HHsearch alignment for GI: 254780794 and conserved domain: PRK12556

>PRK12556 tryptophanyl-tRNA synthetase; Provisional.
Probab=100.00  E-value=0  Score=821.73  Aligned_cols=320  Identities=33%  Similarity=0.545  Sum_probs=292.8

Q ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             88887896015896781055798899999998505995899973115730789858999999999999996286811123
Q gi|254780794|r    3 SSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFVASFLAAGVDPSRNI   82 (355)
Q Consensus         3 ~~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~   82 (355)
T Consensus         1 m~k~~i~SGiqPTG~lHLGNYlGaik~~v~l~~~~~~~~~~~IaDlHalT~~~dp~~l~~~~~~~~a~~LA~GlDP~-~~   79 (328)
T PRK12556          1 MSEKIMLTGIKPTGYPHLGNYIGAIKPALQMSKNNEGKALYFIADYHALNAVHDPEQFSSYTKEVAATWLSLGLGED-VI   79 (328)
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-EE
T ss_conf             99996885779899750888999999999975479987799985142235889999999999999999997589987-49


Q ss_pred             EEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCC------HHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHH
Q ss_conf             65247407889999998510536775201221123320111------013466411114665435652866011121212
Q gi|254780794|r   83 IFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE------ETASLGLFMYPVLMAADILLYRATHVPVGEDQR  156 (355)
Q Consensus        83 if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~------~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~  156 (355)
T Consensus        80 ~f~QS~Vpeh~eL~wil~~~~~~g~L~Rm~q~K~k~~~~~~~~~~~~~~i~~GL~~YPvLmAADILly~a~~VPVGeDQ~  159 (328)
T PRK12556         80 FYRQTEVPEILELAWILACLTPKGLMNRAHAYKAKVEQNKEAGLEVDAGVNMGLYTYPILMAADILLFQATHVPVGKDQI  159 (328)
T ss_pred             EEECCCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCHHHHCCCCEECCCCCHH
T ss_conf             99878973999999999776838888515323005565454035755565554566507653311302664504681069


Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             68999999999998761401100000123211134574314322347564303356774111321345544520014538
Q gi|254780794|r  157 QHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP  236 (355)
Q Consensus       157 ~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~  236 (355)
T Consensus       160 QHlEltRdiA~rFN~~yg~------------------~f~~P~~~i~~~~~~i~gld--gkKMSKS~~---n~I~L~D~~  216 (328)
T PRK12556        160 QHIEIARDIATYFNHTFGT------------------TFTLPEYVIQEEGAILPGLD--GRKMSKSYG---NVIPLFAEQ  216 (328)
T ss_pred             HHHHHHHHHHHHHHHHCCC------------------CCCCCCCCCCCCCCEEECCC--CCCCCCCCC---CCCCCCCCH
T ss_conf             9999999999999875575------------------56786433376543310899--876556878---813476899


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-CHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999998752001223346434556687634313311222225-288899986-79998999899999999983379999
Q gi|254780794|r  237 DIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQI-KIEEALKQF-GGKNFSQFKLALADAVIEEIVPISQK  314 (355)
Q Consensus       237 e~I~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~-~~~e~~~~~-g~~~~gdlK~~Lae~I~~~L~PIRer  314 (355)
T Consensus       217 d~I~kKI~ka~TDs~~-----~~~p--~~~~NL~~i~~~~s~~~~~~~i~~~y~~g~g~g~~K~~Lae~i~~~L~pirer  289 (328)
T PRK12556        217 EKLRKLIFKIKTDSSL-----PNEP--KELETLFTIYKEFATEDEMQSMREKYETGIGWGDVKKELFRVVDRELAGPREK  289 (328)
T ss_pred             HHHHHHHHHCCCCCCC-----CCCC--CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999745158999-----9998--85089999999867953899999998659989999999999999985899999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999982799999999999999999999999999998288
Q gi|254780794|r  315 IQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL  353 (355)
Q Consensus       315 ~~~l~~d~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl  353 (355)
T Consensus       290 ~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~Vr~~vGF  328 (328)
T PRK12556        290 YAMYMNEPNLLYEALEKGAERAREIAKPNLVEIKKRIGF  328 (328)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999974999999999999999999999999999986298