HHsearch alignment for GI: 254780794 and conserved domain: PRK12556
>PRK12556 tryptophanyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=821.73 Aligned_cols=320 Identities=33% Similarity=0.545 Sum_probs=292.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 88887896015896781055798899999998505995899973115730789858999999999999996286811123
Q gi|254780794|r 3 SSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFVASFLAAGVDPSRNI 82 (355)
Q Consensus 3 ~~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~ 82 (355)
T Consensus 1 m~k~~i~SGiqPTG~lHLGNYlGaik~~v~l~~~~~~~~~~~IaDlHalT~~~dp~~l~~~~~~~~a~~LA~GlDP~-~~ 79 (328)
T PRK12556 1 MSEKIMLTGIKPTGYPHLGNYIGAIKPALQMSKNNEGKALYFIADYHALNAVHDPEQFSSYTKEVAATWLSLGLGED-VI 79 (328)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-EE
T ss_conf 99996885779899750888999999999975479987799985142235889999999999999999997589987-49
Q ss_pred EEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCC------HHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHH
Q ss_conf 65247407889999998510536775201221123320111------013466411114665435652866011121212
Q gi|254780794|r 83 IFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE------ETASLGLFMYPVLMAADILLYRATHVPVGEDQR 156 (355)
Q Consensus 83 if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~------~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~ 156 (355)
T Consensus 80 ~f~QS~Vpeh~eL~wil~~~~~~g~L~Rm~q~K~k~~~~~~~~~~~~~~i~~GL~~YPvLmAADILly~a~~VPVGeDQ~ 159 (328)
T PRK12556 80 FYRQTEVPEILELAWILACLTPKGLMNRAHAYKAKVEQNKEAGLEVDAGVNMGLYTYPILMAADILLFQATHVPVGKDQI 159 (328)
T ss_pred EEECCCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCHHHHCCCCEECCCCCHH
T ss_conf 99878973999999999776838888515323005565454035755565554566507653311302664504681069
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 68999999999998761401100000123211134574314322347564303356774111321345544520014538
Q gi|254780794|r 157 QHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP 236 (355)
Q Consensus 157 ~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~ 236 (355)
T Consensus 160 QHlEltRdiA~rFN~~yg~------------------~f~~P~~~i~~~~~~i~gld--gkKMSKS~~---n~I~L~D~~ 216 (328)
T PRK12556 160 QHIEIARDIATYFNHTFGT------------------TFTLPEYVIQEEGAILPGLD--GRKMSKSYG---NVIPLFAEQ 216 (328)
T ss_pred HHHHHHHHHHHHHHHHCCC------------------CCCCCCCCCCCCCCEEECCC--CCCCCCCCC---CCCCCCCCH
T ss_conf 9999999999999875575------------------56786433376543310899--876556878---813476899
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-CHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999998752001223346434556687634313311222225-288899986-79998999899999999983379999
Q gi|254780794|r 237 DIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQI-KIEEALKQF-GGKNFSQFKLALADAVIEEIVPISQK 314 (355)
Q Consensus 237 e~I~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~-~~~e~~~~~-g~~~~gdlK~~Lae~I~~~L~PIRer 314 (355)
T Consensus 217 d~I~kKI~ka~TDs~~-----~~~p--~~~~NL~~i~~~~s~~~~~~~i~~~y~~g~g~g~~K~~Lae~i~~~L~pirer 289 (328)
T PRK12556 217 EKLRKLIFKIKTDSSL-----PNEP--KELETLFTIYKEFATEDEMQSMREKYETGIGWGDVKKELFRVVDRELAGPREK 289 (328)
T ss_pred HHHHHHHHHCCCCCCC-----CCCC--CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999745158999-----9998--85089999999867953899999998659989999999999999985899999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999982799999999999999999999999999998288
Q gi|254780794|r 315 IQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353 (355)
Q Consensus 315 ~~~l~~d~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl 353 (355)
T Consensus 290 ~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~Vr~~vGF 328 (328)
T PRK12556 290 YAMYMNEPNLLYEALEKGAERAREIAKPNLVEIKKRIGF 328 (328)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999974999999999999999999999999999986298