HHsearch alignment for GI: 254780794 and conserved domain: cd00805

>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00  E-value=0  Score=410.31  Aligned_cols=248  Identities=24%  Similarity=0.298  Sum_probs=203.8

Q ss_pred             EEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCC----------CHHHHHHHHHHHHHHHHHCC
Q ss_conf             7896015896-781055798899999998505995899973115730789----------85899999999999999628
Q gi|254780794|r    7 LFVSGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI----------VQENLRYQSRLFVASFLAAG   75 (355)
Q Consensus         7 ~vltG~~PtG-~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~----------~~~~~~~~~~~~~~~~lA~G   75 (355)
T Consensus         2 riy~Gi~PTG~~lHLGhyv~~~~-~~~~q~~-g~~~~~~IaD~hAli~dp~~~~~~r~~~~~e~i~~~~~~~~~~~~~~~   79 (268)
T cd00805           2 KVYVGFDPTAPSLHLGHLVPLMK-LRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLTEEEILENAKYIKKQIKAIL   79 (268)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHH-HHHHHHC-CCCEEEEEECCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             39981479999724999999999-9999878-995899995420140589765022214619999998873899998852


Q ss_pred             --CCCCCCEEEECCCHHHHHHHHHH----HHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCE
Q ss_conf             --68111236524740788999999----851053677520122112332011101346641111466543565286601
Q gi|254780794|r   76 --VDPSRNIIFKQSDVGYHADLSWI----LSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHV  149 (355)
Q Consensus        76 --ldp~k~~if~QS~v~e~~eL~~~----l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~V  149 (355)
T Consensus        80 ~~~~~~~~~i~~ns~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~---~~~~i~~~~f~YPvlQAaDil~~~~~~v  154 (268)
T cd00805          80 KFIPPEKLIFVNNSDWL--LKLYTLDFLRLGKHFSVNRMLRRDAVKVRL---EEEGISLSEFLYPLLQAYDFVYLDVDIQ  154 (268)
T ss_pred             CCCCCCCEEEEECCHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHCCHHHHCCCCE
T ss_conf             58998746999783766--350299999996027788998758887642---1579873235589998601867137714


Q ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11212126899999999999876140110000012321113457431432234756430335677411132134554452
Q gi|254780794|r  150 PVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSR  229 (355)
Q Consensus       150 pVG~DQ~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~  229 (355)
T Consensus       155 pvG~DQ~~hiel~Rdia~r~n~~~~--------------------~~l~-------~pll~g~d--G~KMSKS~~N~-i~  204 (268)
T cd00805         155 LGGSDQRGNITLGRDLIRRLGYKKV--------------------VGLT-------TPLLTGLD--GGKMSKSEGNA-IW  204 (268)
T ss_pred             ECCHHHHHHHHHHHHHHHHHCCCCC--------------------EEEE-------ECEEECCC--CCCCCCCCCCC-CC
T ss_conf             6060089999999999998289761--------------------4553-------11000899--87446789995-01


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHHH
Q ss_conf             00145388999998752001223346434556687634313311222225288899986-799989998999999999
Q gi|254780794|r  230 INLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF-GGKNFSQFKLALADAVIE  306 (355)
Q Consensus       230 I~l~D~~e~I~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~-g~~~~gdlK~~Lae~I~~  306 (355)
T Consensus       205 i~l~dsp~~i~~ki~~~~d---------------~~v~~~~~~~t~~~~~~i~el~~~~~~g~~~~~~K~~La~~i~~  267 (268)
T cd00805         205 DGLLDSPYDFYQKIRNAPD---------------PDVLKFLKLLTFLDYEEIEELEKLYKKGPLPRDAKKALAEELTK  267 (268)
T ss_pred             CCCCCCHHHHHHHEEECCC---------------CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             3121555888614402886---------------04999999996599999999999997588866999999999962