HHsearch alignment for GI: 254780794 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=0 Score=410.31 Aligned_cols=248 Identities=24% Similarity=0.298 Sum_probs=203.8
Q ss_pred EEEEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCC----------CHHHHHHHHHHHHHHHHHCC
Q ss_conf 7896015896-781055798899999998505995899973115730789----------85899999999999999628
Q gi|254780794|r 7 LFVSGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI----------VQENLRYQSRLFVASFLAAG 75 (355)
Q Consensus 7 ~vltG~~PtG-~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~----------~~~~~~~~~~~~~~~~lA~G 75 (355)
T Consensus 2 riy~Gi~PTG~~lHLGhyv~~~~-~~~~q~~-g~~~~~~IaD~hAli~dp~~~~~~r~~~~~e~i~~~~~~~~~~~~~~~ 79 (268)
T cd00805 2 KVYVGFDPTAPSLHLGHLVPLMK-LRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLTEEEILENAKYIKKQIKAIL 79 (268)
T ss_pred EEEEEECCCCCCCCHHHHHHHHH-HHHHHHC-CCCEEEEEECCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 39981479999724999999999-9999878-995899995420140589765022214619999998873899998852
Q ss_pred --CCCCCCEEEECCCHHHHHHHHHH----HHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCE
Q ss_conf --68111236524740788999999----851053677520122112332011101346641111466543565286601
Q gi|254780794|r 76 --VDPSRNIIFKQSDVGYHADLSWI----LSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHV 149 (355)
Q Consensus 76 --ldp~k~~if~QS~v~e~~eL~~~----l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~V 149 (355)
T Consensus 80 ~~~~~~~~~i~~ns~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~---~~~~i~~~~f~YPvlQAaDil~~~~~~v 154 (268)
T cd00805 80 KFIPPEKLIFVNNSDWL--LKLYTLDFLRLGKHFSVNRMLRRDAVKVRL---EEEGISLSEFLYPLLQAYDFVYLDVDIQ 154 (268)
T ss_pred CCCCCCCEEEEECCHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHCCHHHHCCCCE
T ss_conf 58998746999783766--350299999996027788998758887642---1579873235589998601867137714
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11212126899999999999876140110000012321113457431432234756430335677411132134554452
Q gi|254780794|r 150 PVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSR 229 (355)
Q Consensus 150 pVG~DQ~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~ 229 (355)
T Consensus 155 pvG~DQ~~hiel~Rdia~r~n~~~~--------------------~~l~-------~pll~g~d--G~KMSKS~~N~-i~ 204 (268)
T cd00805 155 LGGSDQRGNITLGRDLIRRLGYKKV--------------------VGLT-------TPLLTGLD--GGKMSKSEGNA-IW 204 (268)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCC--------------------EEEE-------ECEEECCC--CCCCCCCCCCC-CC
T ss_conf 6060089999999999998289761--------------------4553-------11000899--87446789995-01
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHHH
Q ss_conf 00145388999998752001223346434556687634313311222225288899986-799989998999999999
Q gi|254780794|r 230 INLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF-GGKNFSQFKLALADAVIE 306 (355)
Q Consensus 230 I~l~D~~e~I~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~-g~~~~gdlK~~Lae~I~~ 306 (355)
T Consensus 205 i~l~dsp~~i~~ki~~~~d---------------~~v~~~~~~~t~~~~~~i~el~~~~~~g~~~~~~K~~La~~i~~ 267 (268)
T cd00805 205 DGLLDSPYDFYQKIRNAPD---------------PDVLKFLKLLTFLDYEEIEELEKLYKKGPLPRDAKKALAEELTK 267 (268)
T ss_pred CCCCCCHHHHHHHEEECCC---------------CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 3121555888614402886---------------04999999996599999999999997588866999999999962