HHsearch alignment for GI: 254780794 and conserved domain: cd00808
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.82 E-value=8e-05 Score=52.53 Aligned_cols=126 Identities=21% Similarity=0.185 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCE-------EE
Q ss_conf 5896781055798899999998505995899973115730789858-999999999999996286811123-------65
Q gi|254780794|r 13 QPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQE-NLRYQSRLFVASFLAAGVDPSRNI-------IF 84 (355)
Q Consensus 13 ~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~-~~~~~~~~~~~~~lA~Gldp~k~~-------if 84 (355)
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G-~f~LRieDt-------D~~R~~~e~~~~I~~dL~wLGl~wDe~~~~~~~~~py 80 (239)
T cd00808 9 SPTGYLHIGGARTALFNYLFAKKHGG-KFILRIEDT-------DQERSVEEAEEAILEDLKWLGIDWDEGPDVGGPYGPY 80 (239)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC-EEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98985338999999999999998199-899984568-------9887876999999999998188877464668888780
Q ss_pred ECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
Q ss_conf 24740788999999851053677520122112332011101346641111466543565286601112121268999999
Q gi|254780794|r 85 KQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRL 164 (355)
Q Consensus 85 ~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~HieltRd 164 (355)
T Consensus 81 ~QS~r~~~Y~~~-----------~~-------~L~~~g-D----G~PtY~fA~vvDD~~~~IThviRg~D~~~~t~~q~~ 137 (239)
T cd00808 81 RQSERLDIYKKY-----------AE-------QLLEEG-D----GFPTYHFANVVDDHLMGITHVIRGEEHLSSTPKQIL 137 (239)
T ss_pred CCCCCHHHHHHH-----------HH-------HHHHCC-C----CCCCCCCCCEECCCCCCCCEEEECHHHHCCCHHHHH
T ss_conf 421079999999-----------99-------767659-9----884234351642654799889715241057799999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780794|r 165 IAQRF 169 (355)
Q Consensus 165 iA~rf 169 (355)
T Consensus 138 l~~~L 142 (239)
T cd00808 138 LYEAL 142 (239)
T ss_pred HHHHC
T ss_conf 99964