HHsearch alignment for GI: 254780794 and conserved domain: cd00808

>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.82  E-value=8e-05  Score=52.53  Aligned_cols=126  Identities=21%  Similarity=0.185  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCE-------EE
Q ss_conf             5896781055798899999998505995899973115730789858-999999999999996286811123-------65
Q gi|254780794|r   13 QPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQE-NLRYQSRLFVASFLAAGVDPSRNI-------IF   84 (355)
Q Consensus        13 ~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~-~~~~~~~~~~~~~lA~Gldp~k~~-------if   84 (355)
T Consensus         9 sPtG~LHiG~~rtal~n~l~Ar~~~G-~f~LRieDt-------D~~R~~~e~~~~I~~dL~wLGl~wDe~~~~~~~~~py   80 (239)
T cd00808           9 SPTGYLHIGGARTALFNYLFAKKHGG-KFILRIEDT-------DQERSVEEAEEAILEDLKWLGIDWDEGPDVGGPYGPY   80 (239)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCC-EEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             98985338999999999999998199-899984568-------9887876999999999998188877464668888780


Q ss_pred             ECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
Q ss_conf             24740788999999851053677520122112332011101346641111466543565286601112121268999999
Q gi|254780794|r   85 KQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRL  164 (355)
Q Consensus        85 ~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~HieltRd  164 (355)
T Consensus        81 ~QS~r~~~Y~~~-----------~~-------~L~~~g-D----G~PtY~fA~vvDD~~~~IThviRg~D~~~~t~~q~~  137 (239)
T cd00808          81 RQSERLDIYKKY-----------AE-------QLLEEG-D----GFPTYHFANVVDDHLMGITHVIRGEEHLSSTPKQIL  137 (239)
T ss_pred             CCCCCHHHHHHH-----------HH-------HHHHCC-C----CCCCCCCCCEECCCCCCCCEEEECHHHHCCCHHHHH
T ss_conf             421079999999-----------99-------767659-9----884234351642654799889715241057799999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780794|r  165 IAQRF  169 (355)
Q Consensus       165 iA~rf  169 (355)
T Consensus       138 l~~~L  142 (239)
T cd00808         138 LYEAL  142 (239)
T ss_pred             HHHHC
T ss_conf             99964