HHsearch results for GI: 254780794 and protein with PDBid: 1yi8_B
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=0 Score=665.43 Aligned_cols=327 Identities=28% Similarity=0.373 Sum_probs=292.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 888878960158967810557988999999985059958999731157307898-5899999999999999628681112
Q gi|254780794|r 3 SSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV-QENLRYQSRLFVASFLAAGVDPSRN 81 (355)
Q Consensus 3 ~~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~-~~~~~~~~~~~~~~~lA~Gldp~k~ 81 (355)
++|+||+|||||||.+|||||+|++++|+.+|+. +++|||||||||+|++.+ ++++++++++++++|+|||+||+|+
T Consensus 20 ~~~~rv~tG~~PSG~~HlG~~l~~~~~~~~lQ~~--~~~~i~IaD~ha~t~~~~~~~~~r~~~~~~~~~~lA~G~Dp~k~ 97 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKT 97 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999899663889726268789999999998757--98899981536761699999999999999999999806993104
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHH-HHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHH
Q ss_conf 3652474078899999985105367752012211233-201110134664111146654356528660111212126899
Q gi|254780794|r 82 IIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKS-KENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLE 160 (355)
Q Consensus 82 ~if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~-~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hie 160 (355)
++|+||++++|.||+|++++.+++++|.|+++|+++. ..+..+++++|+|+||+||||||++|++++||||+||+||+|
T Consensus 98 ~i~~qS~~~~~~el~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDi~~~~~divpvG~DQ~~h~~ 177 (351)
T 1yi8_B 98 TCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLE 177 (351)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 37735511357889999987644525888789998630236666777344555087651465405544677623799999
Q ss_pred HHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999987614011000001232111345743143223475643033567741113213455445200145388999
Q gi|254780794|r 161 ITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA 240 (355)
Q Consensus 161 ltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~ 240 (355)
||||||+|||+.||+ .|+.|++.+. ..+++||| +|++|||||++ |+|+|+|+|++|+
T Consensus 178 LaRdia~~~n~~~~~------------------~~~~P~~~~~-~~~~l~gL-~g~~KmSkS~~---~~I~l~D~~~~I~ 234 (351)
T 1yi8_B 178 QTREIVRRFNALYAP------------------VLAEPQAQLS-RVPRLPGL-DGQAKMSKSLG---NAIALGDSADEVA 234 (351)
T ss_dssp HHHHHHHHHHHHTCS------------------CSCCCEEEEC-SSCSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHH
T ss_pred HHHHHHHHHCCCCCC------------------CCCCCHHHHH-HCCCCCCC-CCCHHCCCCCC---CCCCCCCCHHHHH
T ss_conf 999999995400477------------------6678667764-13456577-75011036853---3467789999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987520012233464345566876343133112222-252888999867999899989999999998337999999998
Q gi|254780794|r 241 KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMR-QIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQHLL 319 (355)
Q Consensus 241 kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~-~~~~~e~~~~~g~~~~gdlK~~Lae~I~~~L~PIRer~~~l~ 319 (355)
+|||+|+||++....+.++.++.+++++++..|.... ..+..+..+..|+++|++||+.|+|.|+++|+|||+||++|+
T Consensus 235 kKI~ka~td~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~~~~~g~~~~~~~K~~lae~l~~~l~pirek~~el~ 314 (351)
T 1yi8_B 235 RKVMGMYTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYE 314 (351)
T ss_dssp HHHHTCCCCTTCCSTTSCCCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99871245999872101477651069999887535520799999999858989899999999999998589999999998
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 27999999999999999999999999999982889
Q gi|254780794|r 320 KDKSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354 (355)
Q Consensus 320 ~d~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl~ 354 (355)
+||++|++||++|++|||++|++||++||++|||-
T Consensus 315 ~d~~~l~~iL~~Ga~kAr~~A~~tl~eVr~~~Gl~ 349 (351)
T 1yi8_B 315 RDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRLF 349 (351)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 19999999999999999999999999999981987