HHsearch results for GI: 254780794 and protein with PDBid: 3n9i_A
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis}
Probab=100.00 E-value=0 Score=754.44 Aligned_cols=332 Identities=41% Similarity=0.628 Sum_probs=318.9
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88888789601589678105579889999999850599589997311573078985899999999999999628681112
Q gi|254780794|r 2 LSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFVASFLAAGVDPSRN 81 (355)
Q Consensus 2 ~~~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~~~~~~~~~~~~~~lA~Gldp~k~ 81 (355)
+++|+||+||+||||++|||||+|+|++|+++|+ +++||||||||||||++++++++++++++++++||||||||+|+
T Consensus 12 ~~~k~~v~tG~~PSG~~HlG~~~g~i~~~~~lq~--~~~~~~~iAD~halt~~~~~~~~~~~~~e~~~~~lA~G~dp~k~ 89 (346)
T 3n9i_A 12 VSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQD--DYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp ---CCEEEEEECSCSCCBHHHHHHTHHHHHTTTT--TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 8999988966588872558887999999999867--89879999778885579999999999999999999868884451
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHH
Q ss_conf 36524740788999999851053677520122112332011101346641111466543565286601112121268999
Q gi|254780794|r 82 IIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEI 161 (355)
Q Consensus 82 ~if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hiel 161 (355)
+||+||++|+|+||+|+|+|+++++||+|+++||++... ..+++++|+|+||+|||||||+|++++||||+||+||+||
T Consensus 90 ~i~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~-~~~~~~~g~~~YP~lqaaDIl~~~~~~vpvG~DQ~~h~el 168 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLEL 168 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHH-SGGGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHCCCCHHCCCCCCCCCHHHHHHHHH
T ss_conf 899776545699999999501377788754333201001-2346772025685665133131088734563756999999
Q ss_pred HHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999876140110000012321113457431432234756430335677411132134554452001453889999
Q gi|254780794|r 162 TRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAK 241 (355)
Q Consensus 162 tRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~k 241 (355)
|||||+|||+.||. +|+.|+..+.+.++++|||++|+.|||||+.+++|+|+|+|+|++|++
T Consensus 169 tRdia~kfn~~y~~------------------~~~~P~~~~~~~~~~~~~l~~~~~kmskSs~s~~n~I~l~d~~~~I~k 230 (346)
T 3n9i_A 169 SRDIASRFNNLYGD------------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVK 230 (346)
T ss_dssp HHHHHHHHHHHHSS------------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCC------------------CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHH
T ss_conf 99999998865588------------------325676565755444015788655566554566427883678778888
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98752001223346434556687634313311222225288899986799989998999999999833799999999827
Q gi|254780794|r 242 KIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQHLLKD 321 (355)
Q Consensus 242 KI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~g~~~~gdlK~~Lae~I~~~L~PIRer~~~l~~d 321 (355)
||++|+||++....+.++++.+|+|++++.+|+.+++.++++..+++++.+||+||+.|+|.|+++|+||||||++|++|
T Consensus 231 KI~ka~Td~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~PiRek~~~l~~d 310 (346)
T 3n9i_A 231 KIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYRED 310 (346)
T ss_dssp HHHTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 76520157988765657776688611599987502577499999987699889999999999999989999999999839
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999999999999982889
Q gi|254780794|r 322 KSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354 (355)
Q Consensus 322 ~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl~ 354 (355)
+++|++||++|++|||++|++||++||++|||-
T Consensus 311 ~~~v~~iL~~Ga~kAr~~A~~tl~~Vr~~~Gl~ 343 (346)
T 3n9i_A 311 EALLQDVMREGAAKARARAQVTLAKVYEAIGFV 343 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999999999999999953898