RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(355 letters)
>gnl|CDD|179170 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 444 bits (1146), Expect = e-125
Identities = 162/348 (46%), Positives = 215/348 (61%), Gaps = 23/348 (6%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
+SG+QPTG LHLGNYLG I+N + Q+ + IADLHA+T E LR +R
Sbjct: 5 LSGIQPTGKLHLGNYLGAIKNWVELQDEYE--CFFCIADLHALTVPQDPEELRENTRELA 62
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
A +LA G+DP ++ IF QS V HA+L+WIL+C+ +G + M QFK+KS + K E S
Sbjct: 63 ADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSA 121
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
GLF YPVLMAADILLY+A VPVGEDQ+QHLE+TR IA+RFN +
Sbjct: 122 GLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLY--------------- 166
Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
FP+ E LI +R+ L +KKMSKSD +D + INLLD+P IAKKI+KA T
Sbjct: 167 ---GEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVT 223
Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALADAVIE 306
D + L L N+ E NL+ I++ + IEE ++ GGK + FK LA+AV+E
Sbjct: 224 DSERLREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVE 283
Query: 307 EIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354
+ PI ++ + LL D +YLD IL EGA +AR A +T+K V E +GL
Sbjct: 284 FLAPIRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVREAMGLL 331
>gnl|CDD|178474 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 346 bits (889), Expect = 5e-96
Identities = 158/349 (45%), Positives = 211/349 (60%), Gaps = 20/349 (5%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
VSGVQPTG +HLGNYLG I+N + QET + + + DLHAIT L +R
Sbjct: 50 VSGVQPTGSIHLGNYLGAIKNWVALQETYDTF--FCVVDLHAITLPHDPRELGKATRSTA 107
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
A +LA G+DPS+ +F QS V HA+L W+LSC +GW+N MIQFKEKS++ +E +
Sbjct: 108 AIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGV 167
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFE-RKIKEVAQKYAQE 187
GL YPVLMA+DILLY+A VPVGEDQ+QHLE+TR IA+R N + RK K++ +
Sbjct: 168 GLLTYPVLMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGR---- 223
Query: 188 EQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAK 247
F + E LI + +R+ SL D + KMSKS SD SRINLLD PD+IA KI++ K
Sbjct: 224 ---GGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCK 280
Query: 248 TDGDVLPSEVSGLE----NRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADA 303
TD GLE R E NL+ I+ + EE L + G + FK L DA
Sbjct: 281 TDS------FPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDA 334
Query: 304 VIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVG 352
+IE + PI + + ++ D SYLD++L EGA+ A A T+ V + +G
Sbjct: 335 LIEHLSPIQVRYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMG 383
>gnl|CDD|161780 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model.
Length = 328
Score = 250 bits (640), Expect = 4e-67
Identities = 136/353 (38%), Positives = 183/353 (51%), Gaps = 38/353 (10%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAIT--NNIVQENLRYQSRL 66
++G+QP+G +HLG+YLG I+ +Q IADLHAIT +N + LR
Sbjct: 6 LTGIQPSGKMHLGHYLGAIQTKWLQQFGVELF--ICIADLHAITVKDNTDPDALRKAREE 63
Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126
A LA G+DP + IF QSD H +L+W+LSC G + M QFK+KS+ E
Sbjct: 64 LAADILAVGLDPKKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQA---ENV 120
Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186
+GLF YPVL AADILLY+A VPVG DQ QHLE+TR +A+RFN +F
Sbjct: 121 PIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKF------------- 167
Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246
K FFP E LI R+ L KKMSKSD S I L D P I KKI+KA
Sbjct: 168 -----KNFFPKPESLISKFFPRLMGLSG--KKMSKSD--PNSAIFLTDTPKQIKKKIRKA 218
Query: 247 KTDGD----VLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLAL 300
TDG E G+ N L + F + K++E +++ G + + K AL
Sbjct: 219 ATDGGRVTLFEHREKGGVPNLLVIYQYLSFF-LIDDDKLKEIYEKYKSGKLLYGELKKAL 277
Query: 301 ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
+ + E + I ++ + LD IL GA +AR A +T+ V + +GL
Sbjct: 278 IEVLQEFLKEIQERRAE--IAEEILDKILEPGAKKARETANKTLADVYKAMGL 328
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 215 bits (549), Expect = 2e-56
Identities = 120/358 (33%), Positives = 180/358 (50%), Gaps = 34/358 (9%)
Query: 4 SDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQ 63
S+ + ++G++PTG HLGNY+G I+ ++ + +YFIAD HA+ E R
Sbjct: 2 SEKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSY 61
Query: 64 SRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE 123
+R A++L+ G+DP I ++QSDV +L+WILSC+ G MN +K K +NKE
Sbjct: 62 TREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKE 121
Query: 124 ETASL------GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKI 177
L GL+ YP+LMAADILL++ATHVPVG+DQ QH+EI R IA FN F
Sbjct: 122 AGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTF---- 177
Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237
+ ++ P E +I + + L +KMSKS + I L +
Sbjct: 178 ---------GDTFT---LP--EYVIQEEGAILPGLD--GRKMSKSYG---NVIPLFAEQE 218
Query: 238 IIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIK-IEEALKQFGGKNFSQF 296
+ K I K KTD LP+E E + + FAT +++ + E + G +
Sbjct: 219 KLRKLIFKIKTD-SSLPNEPKDPETSA-LFTIYKEFATEEEVQSMREKYET--GIGWGDV 274
Query: 297 KLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354
K L V E+ +K + + S LD L +GA RAR A+ + + + +G
Sbjct: 275 KKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGFE 332
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 201 bits (513), Expect = 3e-52
Identities = 104/352 (29%), Positives = 162/352 (46%), Gaps = 35/352 (9%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLFV 68
+G +PTG LHLG+Y+G ++N + Q H IAD A+T+N E +R
Sbjct: 7 TGDRPTGKLHLGHYVGSLKNRVALQNE--HEQFVLIADQQALTDNAKNPEKIRRNILEVA 64
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE-NKEETAS 127
+LA G+DP+++ IF QS + A+L+ + + + K + + +
Sbjct: 65 LDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIP 124
Query: 128 LGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQE 187
G YPV AADI ++AT VPVG+DQ +E TR I +RFN
Sbjct: 125 AGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFN----------------- 167
Query: 188 EQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAK 247
Y E L+ A R+ L D KMSKS + I L D+ D I KK+
Sbjct: 168 SLYGTDVLVEPEALL-PEAGRLPGL-DGKAKMSKSLGNA---IYLSDDADTIKKKVMSMY 222
Query: 248 TDGDVLPSEVSGLENRLEAKNL---IEIFATMRQIKIEE--ALKQFGGKNFSQFKLALAD 302
TD + + E G ++E + ++ F + ++ E A Q GG + K L +
Sbjct: 223 TDPNHIRVEDPG---KVEGNVVFTYLDAFDPDKA-EVAELKAHYQRGGLGDVKCKRYLEE 278
Query: 303 AVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354
+ E + PI ++ KD Y+ IL G+ +AR A +T+ V + +GL+
Sbjct: 279 VLQELLAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKDAMGLN 330
>gnl|CDD|183402 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 183 bits (466), Expect = 6e-47
Identities = 121/360 (33%), Positives = 177/360 (49%), Gaps = 47/360 (13%)
Query: 8 FVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQ-SRL 66
++G+ TG HLGNY G IR I YF+AD HA+ + R Q S L
Sbjct: 5 VLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIK--CDDPARIQRSTL 62
Query: 67 -FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFK---EKSKENK 122
A++LAAG+DP R ++QSD+ +L+W+L+CVA G +N +K +K+
Sbjct: 63 EIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAG 122
Query: 123 EET---ASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKE 179
E+ + GLFMYPVLMAADIL++ A VPVG DQ QH+E+ R IAQRFN
Sbjct: 123 EDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFN--------- 173
Query: 180 VAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKS-DSSDFSRINLLDNPDI 238
Y FF + E +I+ S + + L D +KMSKS D++ I L +
Sbjct: 174 --------HLYGGEFFVLPEAVIEESVATLPGL-DG-RKMSKSYDNT----IPLFAPREE 219
Query: 239 IAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEI---FATMRQIKIEEALKQ--FGGKNF 293
+ K I TD S G E L ++ FAT + A +Q G +
Sbjct: 220 LKKAIFSIVTD-----SRAPGEPKDTEGSALFQLYQAFATPEE---TAAFRQALADGIGW 271
Query: 294 SQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
K L + + E+ P+ ++ + L+ + ++ IL+ GA +AR A + + E VGL
Sbjct: 272 GDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGAAKARRIATPFLAELREAVGL 331
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 155 bits (393), Expect = 2e-38
Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 72/300 (24%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-----IVQENLRYQ 63
+SG++PTG LHLG+Y G+++N ++ Q + +F+AD HA+T + ++++N+
Sbjct: 6 LSGMRPTGRLHLGHYHGVLKNWVKLQH--EYECFFFVADWHALTTHYETPEVIEKNVWD- 62
Query: 64 SRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE 123
V +LAAGVDP++ +F QS V HA+L +LS + +GW+ + +K++ ++ KE
Sbjct: 63 ---MVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKE 119
Query: 124 -ETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFN------TEFERK 176
+ ++ G YP+L +ADIL+YRA VPVGEDQ H+E+TR IA+RFN FE K
Sbjct: 120 KDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREPGFEEK 179
Query: 177 IKEVAQK--------YA------QEEQYSKGFFPIIE---GLIDSSAS-----RIR---- 210
+ +K Y QEE G +E L+ + R R
Sbjct: 180 AEAAIKKLGKKRAKLYHELRNAYQEE----GDDEALEQARALLQEQQNLSMGDRERLFGY 235
Query: 211 --------------SLRDASK-------KMSKSDSSDFSRINLLDNPDIIAKKIQKAKTD 249
L +ASK KMSKS + I L ++P+ + KKI+ TD
Sbjct: 236 LEGAGKIILPEPQALLTEASKMPGLDGQKMSKSYGNT---IGLREDPESVTKKIRTMPTD 292
Score = 53.0 bits (128), Expect = 1e-07
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 297 KLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355
K + DA++ E P+ ++ Q D S + I+ +G +AR A+ETM+ V E +GLS+
Sbjct: 340 KQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMGLSY 398
>gnl|CDD|183403 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 86.5 bits (215), Expect = 1e-17
Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 46/250 (18%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYF-IADLHA-ITNNIVQENLRYQSRL 66
+G P+G +H+G+ + + QE ++ Y IAD A + E R +
Sbjct: 70 YTGFMPSGPMHIGHKMVFDE-LKWHQEFGANV--YIPIADDEAYAARGLSWEETREWAYE 126
Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126
++ +A G DP + I+ QS+ DL++ L+ + + F ++
Sbjct: 127 YILDLIALGFDPDKTEIYFQSENIKVYDLAFELAKKVNFSELKAIYGFTGET-------- 178
Query: 127 SLGLFMYPVLMAADILL------YRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180
++G YP AADIL + T VPVG DQ H+ +TR IA+R + +
Sbjct: 179 NIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGF----- 233
Query: 181 AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA 240
Y K F P + G KMS S S I L D+P+ +
Sbjct: 234 ---IKPSSTYHK-FMPGLTG----------------GKMSSSKPE--SAIYLTDDPETVK 271
Query: 241 KKIQKAKTDG 250
KKI KA T G
Sbjct: 272 KKIMKALTGG 281
>gnl|CDD|181468 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 50.6 bits (122), Expect = 5e-07
Identities = 62/255 (24%), Positives = 97/255 (38%), Gaps = 69/255 (27%)
Query: 11 GVQPTGVLHLGNYLGMIRNVIRRQETCNHLGM---YFIADLHAITNNI-VQENLRYQSRL 66
G +P+G +HLG+ L M + Q+ G +AD HA N+ E +R +
Sbjct: 36 GFEPSGKIHLGHLLTM-NKLADLQK----AGFKVTVLLADWHAYLNDKGDLEEIRKVAEY 90
Query: 67 FVASFLAAGVDPSR-NIIFK---QSDVGYHADLSWI-----LSCVAR----MGWMNNMIQ 113
F A G+DP + + Q D Y + + L+ R MG
Sbjct: 91 NKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMG------- 143
Query: 114 FKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPV-GEDQRQ-HLEITRLIAQRFNT 171
+ E + +YP++ ADI Y + V G DQR+ H+ + R + +
Sbjct: 144 -------RRMEEPDVSKLVYPLMQVADIF-YLDVDIAVGGMDQRKIHM-LAREVLPKLGY 194
Query: 172 EFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRIN 231
+ K V P++ GL D KMSKS I
Sbjct: 195 K-----KPVCI-----------HTPLLTGL-DGGG----------IKMSKSKPGSA--IF 225
Query: 232 LLDNPDIIAKKIQKA 246
+ D+P+ I +KI+KA
Sbjct: 226 VHDSPEEIRRKIKKA 240
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 49.9 bits (119), Expect = 1e-06
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 43/245 (17%)
Query: 11 GVQPTGVLHLGNYLGMIRNVIRRQETCNHLG---MYFIADLHAITNNIVQ---ENLRYQS 64
G +P+G +H+ + NV C G ++++AD A+ N+ V E +R
Sbjct: 38 GFEPSGRMHIAQGIFKAVNV----NKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVG 93
Query: 65 RLFVASFLAAGVDPSRNIIFKQSD-VGYHADLSWILSCVARMGWMNNMIQFKE--KSKEN 121
R + + AAG+D + + S+ + HA+ W V +G N + + K+
Sbjct: 94 RYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGK 151
Query: 122 KEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVA 181
E T + +YP++ ADI +A +G DQR+ ++A+ + RK+K
Sbjct: 152 TEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRK----VNMLAREYCDLIGRKLK--- 204
Query: 182 QKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAK 241
P+I S + L+ KMSKSD S I + D + +A+
Sbjct: 205 --------------PVI-----LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVAR 243
Query: 242 KIQKA 246
KI++A
Sbjct: 244 KIRQA 248
>gnl|CDD|161781 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples.
Length = 377
Score = 38.9 bits (91), Expect = 0.002
Identities = 59/323 (18%), Positives = 102/323 (31%), Gaps = 69/323 (21%)
Query: 8 FVSGVQPTGV-LHLGNYLGMIRNVIRRQETCNHLGMYFIADLHA--------------IT 52
G PT LHLG+ + + +R + H + + D A +T
Sbjct: 33 LYVGFDPTAPSLHLGHLVPL--LKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLT 90
Query: 53 NNIVQENLRYQSRLFVASFLAAGVDPSRNIIFKQSD-------VGYHADLSWILSCVARM 105
VQEN + +A +D + S+ + + DL I S V RM
Sbjct: 91 REEVQENAENIKK-----QIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFS-VNRM 144
Query: 106 GWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADIL-LYRATHVPVGEDQRQHLEITRL 164
+ F + + SL F+YP+L A D + L + G DQ
Sbjct: 145 --LRRD-AFSSRLERG----ISLSEFIYPLLQAYDFVYLNVDLQIG-GSDQW-------- 188
Query: 165 IAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDS 224
N RK +++ ++ + P++ + +S +
Sbjct: 189 ----GNI---RKGRDLIRRNLPSLGFGL-TVPLLTPADGEKMGK-----SGGGAVSLDEG 235
Query: 225 SDFSRINLLDNPDIIAKKIQKAKTDGDV----LPSEVSGLENRLEAKNLIEIFATM---- 276
++ PD KKI K T + E+ G R +NL +
Sbjct: 236 KYDFYQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGE 295
Query: 277 -RQIKIEEALKQFGGKNFSQFKL 298
+ EE + + +L
Sbjct: 296 EAALAAEEISEAIFSGGLNPDEL 318
>gnl|CDD|185462 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 38.1 bits (89), Expect = 0.003
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 43 YFIADLHAITNNIVQ---ENLRYQSRLFVASFLAAGVDPSRNIIFKQS--DVGYHADLSW 97
+++AD A+ NN + E +R F+ + AAG+D N+ F + ++ + + W
Sbjct: 103 FWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMD-NVRFLWASEEINKNPNDYW 161
Query: 98 ILSC-VARMGWMNNMIQFKEKSK-----ENKEETASLGLFMYPVLMAADILLYRATHVPV 151
+ +AR N+ + K S+ E E+ + +YP + ADI +A +
Sbjct: 162 LRVMDIARS---FNITRIKRCSQIMGRSEGDEQPCAQ--ILYPCMQCADIFYLKADICQL 216
Query: 152 GEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRS 211
G DQ RK+ +A++Y +++ K PII S +
Sbjct: 217 GMDQ-------------------RKVNMLAREYCDKKKIKKK--PII-----LSHHMLPG 250
Query: 212 LRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246
L + +KMSKSD + S I + D+ + + +KI+KA
Sbjct: 251 LLEGQEKMSKSDPN--SAIFMEDSEEDVNRKIKKA 283
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 32.8 bits (75), Expect = 0.14
Identities = 47/190 (24%), Positives = 68/190 (35%), Gaps = 56/190 (29%)
Query: 72 LAAGVDPSRNIIFKQSDVGY-----HADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126
+A G D R IF SD Y + ++ I CV + + + F +
Sbjct: 141 IACGFDVERTFIF--SDFDYVGGAFYKNMVKIAKCVT-LNQVRGIFGFSGED-------- 189
Query: 127 SLGLFMYPVLMAADILLYRATHV-----------PVGEDQRQHLEITRLIAQRFNTEFER 175
++G +P + AA H+ P DQ + +TR +A R
Sbjct: 190 NIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRL------ 243
Query: 176 KIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDN 235
K A E S+ FFP ++G S KMS SD + S I + D
Sbjct: 244 ----GYYKPALIE--SR-FFPALQG--------------ESGKMSASDPN--SAIYVTDT 280
Query: 236 PDIIAKKIQK 245
P I KI K
Sbjct: 281 PKEIKNKINK 290
>gnl|CDD|180195 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxidase; Provisional.
Length = 195
Score = 29.4 bits (67), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 163 RLIAQRFNTEFERKIKEVAQKYAQEE 188
R I+ R E K EV K+AQ E
Sbjct: 125 RPISSRA--ALEAKFAEVKAKFAQGE 148
>gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 459
Score = 29.4 bits (66), Expect = 1.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 134 PVLMAADILLYRATHVPVGEDQRQHLEITRL---IAQRFNTEFERKIKEV 180
P +AA++ A VP E QR+ + +L IA N F + EV
Sbjct: 348 PGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNARFLGQTVEV 397
>gnl|CDD|181869 PRK09453, PRK09453, phosphodiesterase; Provisional.
Length = 182
Score = 29.4 bits (67), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 133 YPVLMAADILLYRATHVPVGEDQ 155
P L D+L+Y TH+PV E Q
Sbjct: 113 LPALHDGDVLVYGHTHIPVAEKQ 135
>gnl|CDD|179031 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 28.3 bits (64), Expect = 3.5
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 25/127 (19%)
Query: 156 RQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDA 215
++HL ++F + E+ + E++ + + +A
Sbjct: 141 KKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKF-------EAQKEEEDEKLAKEALEA 193
Query: 216 SKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFAT 275
KK+ + + P I KKI K E + EI
Sbjct: 194 MKKLEAEKKKQSKNFDPKEGPVQIGKKIDKE------------------EITPMKEINEE 235
Query: 276 MRQIKIE 282
R++ +E
Sbjct: 236 ERRVVVE 242
>gnl|CDD|167080 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 25 GMIRNVIRRQETCNHLGMYFIADLHAITNNIVQE 58
GMI N +G YF+ L +I +NIV+E
Sbjct: 308 GMIENAAE-------MGAYFLEGLRSIRSNIVRE 334
>gnl|CDD|150225 pfam09480, PrgH, Type III secretion system protein PrgH-EprH
(PrgH). In Salmonella, the gene encoding this protein
is part of a four-gene operon PrgHIJK, while in other
organisms it is found in type III secretion operons.
PrgH has been shown to be required for type III
secretion and is a structural component of the needle
complex, which is the core component of type III
secretion systems.
Length = 373
Score = 27.3 bits (61), Expect = 6.9
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 174 ERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLL 233
E+ + +VA Y + F I L D +RIR D + S FS I L
Sbjct: 289 EQGLTKVALPYRRVATNGGVTFVINGALNDEELARIRRFVDEYYRQWGSRYVQFS-IELK 347
Query: 234 DNP 236
D+
Sbjct: 348 DDW 350
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
Provisional.
Length = 380
Score = 27.1 bits (61), Expect = 6.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 104 RMGWMN---NM--IQFKEKSKENKEETASLG--LFMYPVL 136
R G MN NM ++F+EK K K AS+G +F + L
Sbjct: 161 RFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIFNWKRL 200
>gnl|CDD|185572 PTZ00350, PTZ00350, adenylosuccinate synthetase; Provisional.
Length = 436
Score = 26.9 bits (60), Expect = 7.5
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 269 LIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTI 328
L+E Q IEE + + + + L D +++ + +++ I+ + +
Sbjct: 177 LVEKL--QEQYNIEEYDAEEELERYKGYAEKLKDMIVDTVYFMNKAIKEGKR-------V 227
Query: 329 LVEGANRA 336
LVEGAN
Sbjct: 228 LVEGANAT 235
>gnl|CDD|178736 PLN03194, PLN03194, putative disease resistance protein;
Provisional.
Length = 187
Score = 27.1 bits (60), Expect = 8.2
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 251 DVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFG------GKNFSQFKLALADAV 304
DV PS++ ++N I F +EEA G N+S+ +DAV
Sbjct: 118 DVKPSQLRVVDNGTCPDEEIRRF----NWALEEAKYTVGLTFDSLKGNWSEVVTMASDAV 173
Query: 305 IEEIVPISQKIQ 316
I+ ++ + ++
Sbjct: 174 IKNLIELEEEKS 185
>gnl|CDD|152161 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family is
long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 27.0 bits (60), Expect = 8.4
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 204 SSASRIR-------SLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKTDGDVLPSE 256
S+A+RI +L+ K++ S + +R+ L + D + KI K DG + E
Sbjct: 1619 SNAARIAELMAQDPALKALIKQLQSSPGT-LARVRL-EPKDSLRDKIDKGILDGTITQDE 1676
Query: 257 VSGL---ENRLEAKNLIEIFATMRQ 278
+SGL N L K+ I +F T+ Q
Sbjct: 1677 LSGLLQDRNNLRIKS-ISVFQTVTQ 1700
>gnl|CDD|179519 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 26.9 bits (60), Expect = 9.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 128 LGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQ 167
LGLF L+AA I+L+R+ L I L+
Sbjct: 208 LGLFGAAALIAALIVLFRSQRADNALTGEDELAIRGLLLL 247
>gnl|CDD|181428 PRK08446, PRK08446, coproporphyrinogen III oxidase; Provisional.
Length = 350
Score = 26.8 bits (60), Expect = 9.3
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 208 RIRSLRDASKKMSKSDSSDFSRINL-------LDNPDIIAKKIQKAKTDGDVLPSEVSGL 260
RI S + K + + + F I++ LDN ++ ++++ AK LP
Sbjct: 129 RIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKE----LPI----- 179
Query: 261 ENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308
N L A +L IEE F + + LA IE++
Sbjct: 180 -NHLSAYSLT----------IEENTPFFEKNHKKKDDENLAKFFIEQL 216
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.134 0.375
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,730,083
Number of extensions: 373253
Number of successful extensions: 872
Number of sequences better than 10.0: 1
Number of HSP's gapped: 837
Number of HSP's successfully gapped: 46
Length of query: 355
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 261
Effective length of database: 3,963,321
Effective search space: 1034426781
Effective search space used: 1034426781
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)