RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Score = 310 bits (796), Expect = 2e-85 Identities = 134/345 (38%), Positives = 195/345 (56%), Gaps = 21/345 (6%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68 SG QP+G L +GNY+G +R ++ Q+ + +Y I DLHAIT LR ++ + Sbjct: 19 FSGAQPSGELTIGNYMGALRQWVQMQDDYD--CIYCIVDLHAITARQDPALLRKRTLDTL 76 Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128 A +LA G+DP ++ IF QS V H+ LSW L+C G ++ M QFK+KS E + Sbjct: 77 ALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYAEN-INA 135 Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188 GLF YPVLMAADILLY+ VPVGEDQ+QHLE++R IA RFN + Sbjct: 136 GLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLY--------------- 180 Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248 F I E I + +R+ SL+D +KKMSKSD + + I LL++P + KKI++A T Sbjct: 181 ---GDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMT 237 Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308 D D +E + NL++I + + I E QF G+ + K A+ADAV + Sbjct: 238 DSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGML 297 Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353 + ++ + +D++ L ++ EGA +AR RAQ T+ V E +G Sbjct: 298 SELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGF 342 >3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni} Length = 322 Score = 276 bits (706), Expect = 6e-75 Identities = 111/345 (32%), Positives = 169/345 (48%), Gaps = 29/345 (8%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68 ++G+QP+G LH+GNY G I+ ++ QE FIA+ HA+T++ E L+ S Sbjct: 7 LTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMF--MFIANYHAMTSSQDGEKLKQNSLKAA 64 Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128 A+FL+ G+DP +++ + QSDV +L WILS MG + +K+K + +AS Sbjct: 65 AAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASH 122 Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188 GLF YPVLMAADILL+ VPVG+DQ QH+EI R IA + N E+ Sbjct: 123 GLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW--------------- 167 Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248 F + E ++ + + KMSKS + I++ + + K+I T Sbjct: 168 ---GEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN---TIDIFSSEKTLKKQISSIVT 219 Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308 D L + ++F K + + GG+ + FK+ L + V Sbjct: 220 DSTALEDP--KDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYF 277 Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353 +K LL+ S+L IL GA +AR AQE M+ + E +GL Sbjct: 278 KEAREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322 >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A Length = 328 Score = 243 bits (621), Expect = 4e-65 Identities = 134/346 (38%), Positives = 188/346 (54%), Gaps = 25/346 (7%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68 SG+QP+GV+ +GNY+G +R + Q N + I D HAIT LR R Sbjct: 5 FSGIQPSGVITIGNYIGALRQFVELQHEYNCY--FCIVDQHAITVWQDPHELRQNIRRLA 62 Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128 A +LA G+DP++ +F QS+V HA +W+L C+ +G + M QFKEKS + S Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEA--VSA 120 Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188 GL YP LMAADILLY VPVGEDQ+QH+E+TR +A+RFN + Sbjct: 121 GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------- 167 Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248 F I E I +RI SL D +KKMSKSD + + I LLD+ I KKI+ A T Sbjct: 168 -----LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVT 222 Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308 D + E + NL+ I++T+ IEE +Q+ GK + FK LA VIE + Sbjct: 223 DSEGTIRYD--KEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETL 280 Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354 PI ++ H ++ + LD +L EGA +A A E ++ + + +GL Sbjct: 281 RPIQERYHHWMESE-ELDRVLDEGAEKANRVASEMVRKMEQAMGLG 325 >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129} Length = 348 Score = 217 bits (554), Expect = 2e-57 Identities = 108/359 (30%), Positives = 177/359 (49%), Gaps = 34/359 (9%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68 ++G+Q +G HLGNYLG+++++I QE C F+ADLH+IT + + L+ + V Sbjct: 8 LTGIQASGKQHLGNYLGVMQSLIELQEQCQLF--VFVADLHSITVDFQPQALKQNNFDLV 65 Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENK-----E 123 + LA G+DP + +F QSD+ H+ + +++ + +G + M QFK K E Sbjct: 66 RTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGT 125 Query: 124 ETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQK 183 GL YP LMA DILLY+ VPVG DQ+QHLE+TR +AQR +F+ K Sbjct: 126 LNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK------- 178 Query: 184 YAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKI 243 + + + + +RI L D +KKMSKS + I L D +++ KKI Sbjct: 179 -----------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKI 227 Query: 244 QKAKTDGDVLPS-------EVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQF 296 ++A TD V+ + L+A + ++ + F K++ Sbjct: 228 RQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDL 287 Query: 297 KLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355 K AL +A + +V I +K + + ++ + L G N+A+ A+ T+ + GL Sbjct: 288 KNALTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGFGLGS 344 >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8} Length = 337 Score = 201 bits (512), Expect = 2e-52 Identities = 117/347 (33%), Positives = 171/347 (49%), Gaps = 26/347 (7%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQEN--LRYQSRL 66 +SG+QP+G +H+GNYLG I+ + E + I D HA+TN + + L ++ Sbjct: 5 LSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFE 64 Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126 +AAG+DP + +F QS V H +LSW+ + + +G + M QFK+K+ + + T Sbjct: 65 AALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQE--TV 122 Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186 GL MYPVL AADIL+Y+A VPVGEDQ QH+E+TR IA+RFN F E Sbjct: 123 WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNP 182 Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246 E P + G+ +K S + I LL+ + I +KIQ Sbjct: 183 E-------APRVPGIDG---------------KAKMSKSLGNTIGLLEPEESIWQKIQHL 220 Query: 247 KTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIE 306 D + G R + FA ++ + + G K L D ++E Sbjct: 221 PDDPQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLME 280 Query: 307 EIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353 + PI ++ + L KD Y+ L+EGA RAR AQ TM+ V E VGL Sbjct: 281 ALRPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGL 327 >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Score = 200 bits (508), Expect = 5e-52 Identities = 90/348 (25%), Positives = 145/348 (41%), Gaps = 28/348 (8%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLF 67 ++G +PTG LHLG+ G ++N +R Q+ +AD+ A+T++ + E +R Sbjct: 26 LTGDRPTGALHLGHLAGSLQNRVRLQDEAELF--VLLADVQALTDHFDRPEQVRENVLAV 83 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE-ETA 126 +LAAG+DP + QS V A+L+ + + + K + + E Sbjct: 84 ALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERV 143 Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186 G F+YPV AADI + AT VPVG+DQ LE TR I +RFN + + Sbjct: 144 PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVL--------A 195 Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246 E Q P + GL +K S + I L D+ D +A+K+ Sbjct: 196 EPQAQLSRVPRLPGL---------------DGQAKMSKSLGNAIALGDSADEVARKVMGM 240 Query: 247 KTDGDVLPSEVSGLENRLEAKNLIEIFATMRQ-IKIEEALKQFGGKNFSQFKLALADAVI 305 TD L + G ++ F ++ + + GG + K L D + Sbjct: 241 YTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLN 300 Query: 306 EEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353 + PI + +D + + EG R R A +T+ V + L Sbjct: 301 GVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL 348 >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Score = 198 bits (503), Expect = 2e-51 Identities = 97/348 (27%), Positives = 162/348 (46%), Gaps = 28/348 (8%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI-VQENLRYQSRLF 67 +SG++PTG LH+G+ +G + N ++ QE + YF+AD HA+T + L+ +R Sbjct: 16 LSGMRPTGKLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDL 74 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE-NKEETA 126 V FLA G+DP +++IF QS V HA+L+ + S + + + + +KE E N ++ + Sbjct: 75 VRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLS 134 Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186 + G +YPVL AADIL+Y+A VPVGEDQ H+E+TR IA+RFN ++ E ++ Sbjct: 135 TAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSR 194 Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246 + K S + INL + + + I + Sbjct: 195 VPKLP------------------------GTDGRKMSKSYGNIINLEISEKELEQTILRM 230 Query: 247 KTDGDVLPSEVSGLENRLEAKNLIEIFATM-RQIKIEEALKQFGGKNFSQFKLALADAVI 305 TD + G + F + K K L + Sbjct: 231 MTDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMK 290 Query: 306 EEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353 ++ PI + + + +D Y+D +++EG +AR A +TM+ V + L Sbjct: 291 RKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNL 338 >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3} Length = 375 Score = 190 bits (484), Expect = 3e-49 Identities = 59/344 (17%), Positives = 119/344 (34%), Gaps = 31/344 (9%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN--------IVQENLR 61 G + +G +HLG L + Q+ F+AD H+ N+ I + L+ Sbjct: 38 IGFEISGYIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLGGDLEVIQEVALK 96 Query: 62 YQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKEN 121 Y S G DP + S++ D + +++ ++ +++ Sbjct: 97 YFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQ 156 Query: 122 KEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVA 181 E +YP++ ADI T G DQR+ I +AQ+ E Sbjct: 157 MGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGE-- 214 Query: 182 QKYAQEEQYSKGFFPIIEGLIDSSASRI---RSLRDASKKMSKSDSSDFSRINLLDNPDI 238 + + ++ GL + I ++ +M S S +S + + D+P+ Sbjct: 215 -----KLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEE 269 Query: 239 IAKKIQKAKTDGDVLPSE----------VSGLENRLEAKNLIEIFATMRQIKIEEALKQF 288 I +K++KA + + + EE + F Sbjct: 270 IRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDF 329 Query: 289 --GGKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILV 330 G + K A+A+ +I + PI + + + + ++ + Sbjct: 330 AEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSVKI 373 >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Score = 186 bits (474), Expect = 5e-48 Identities = 57/371 (15%), Positives = 114/371 (30%), Gaps = 56/371 (15%) Query: 1 MLSSDNLFV-SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN----- 54 +L L + G TG H+ ++ M + + ADLHA +N Sbjct: 30 ILKERELKIYWGTATTGKPHVAYFVPMSKIADFLK--AGCEVTILFADLHAYLDNMKAPW 87 Query: 55 -IVQENLRYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQ 113 +++ + Y + A + GV + K +D + + + ++ + ++ + Sbjct: 88 ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKK 147 Query: 114 FKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEF 173 + + E L +YP L A D + G DQR+ Sbjct: 148 AGAEVVKQVEHP-LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYS- 205 Query: 174 ERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLL 233 + S S + S+I+LL Sbjct: 206 ----------------KRVHLMNP--------------MVPGLTGSKMSSSEEESKIDLL 235 Query: 234 DNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIK---------IEEA 284 D + + KK++KA + + + + L F +R K + Sbjct: 236 DRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDL 295 Query: 285 LKQFGGKNFS--QFKLALADAVIEEIVPISQKIQ----HLLKDKSYLDTILVEGANRARC 338 K F + K ++ A+ + + PI +K L +Y D + + Sbjct: 296 EKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPA 355 Query: 339 RAQETMKYVNE 349 + E + + E Sbjct: 356 KNSEPEEVILE 366 >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Score = 177 bits (451), Expect = 2e-45 Identities = 53/356 (14%), Positives = 104/356 (29%), Gaps = 64/356 (17%) Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ--ENLRYQSRL 66 +G P+ LH+G+ + + + + + D E + Sbjct: 79 TGRGPSSESLHVGHLVPFLFTKYLQDT-FKVPLVIQLTDDEKFIFKSNLTLEETHNYAYE 137 Query: 67 FVASFLAAGVDPSRNIIFKQSD-VGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEET 125 + +A G DP IF + + + + ++ FK+ Sbjct: 138 NMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSC------- 190 Query: 126 ASLGLFMYPVLMAADILLYRA-----------THVPVGEDQRQHLEITRLIAQRFNTEFE 174 ++G F +P + AA VP DQ + + R +A R Sbjct: 191 -NVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKP 249 Query: 175 RKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLD 234 I + L+ + KMS S S I + D Sbjct: 250 SSI----------------HSIFLPS-----------LQGSQTKMSASV--QNSSIFVND 280 Query: 235 NPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATM---RQIKIEEALKQF--G 289 N + I KI K G E ++ + K+EE K++ G Sbjct: 281 NEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSG 340 Query: 290 GKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMK 345 + K L +++ + + + D ++ + N++R + + Sbjct: 341 EMLSGEIKSILVQELVKLTKNHQKNREAINDD------VIAKFTNKSREQLLKLFI 390 >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Score = 171 bits (433), Expect = 3e-43 Identities = 59/337 (17%), Positives = 106/337 (31%), Gaps = 54/337 (16%) Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRL-F 67 +G P+ +H+G+ + I Q+ N + + D + + Y + Sbjct: 113 TGRGPSSEAMHVGHLIPFIFTK-WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVEN 171 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127 +A G D ++ IF D Y S V ++ Q K ++ Sbjct: 172 AKDIIACGFDINKTFIFSDLD--YMGMSSGFYKNVVKIQKHVTFNQVKGIFG--FTDSDC 227 Query: 128 LGLFMYPVLMAADILLY-----------RATHVPVGEDQRQHLEITRLIAQRFNTEFERK 176 +G +P + AA +P DQ + +TR +A R Sbjct: 228 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------ 281 Query: 177 IKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP 236 P + ++ +L+ A KMS SD S I L D Sbjct: 282 ----------------YPKPAL-----LHSTFFPALQGAQTKMSASD--PNSSIFLTDTA 318 Query: 237 DIIAKKIQKAKTDGDVLPSEVS---GLENRLEAKNLIEIFATMRQIKIEEALKQF--GGK 291 I K+ K G E G ++ + F K+E+ K + G Sbjct: 319 KQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAM 378 Query: 292 NFSQFKLALADAVIEEIVPISQKIQHLLKD--KSYLD 326 + K AL + + I + + + + K ++ Sbjct: 379 LTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMT 415 >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Score = 171 bits (433), Expect = 3e-43 Identities = 57/337 (16%), Positives = 99/337 (29%), Gaps = 54/337 (16%) Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRL-F 67 +G P+ +H+G+ + I Q+ N + + D + + Y + Sbjct: 160 TGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVEN 218 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127 +A G D ++ IF D Y S V ++ Q K ++ Sbjct: 219 AKDIIACGFDINKTFIFSDLD--YMGMSSGFYKNVVKIQKHVTFNQVKGIFG--FTDSDC 274 Query: 128 LGLFMYPVLMAADILLY-----------RATHVPVGEDQRQHLEITRLIAQRFNTEFERK 176 +G +P + AA +P DQ + +TR +A R Sbjct: 275 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPAL 334 Query: 177 IKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP 236 + L+ A KMS SD S I L D Sbjct: 335 LHSTFFPA---------------------------LQGAQTKMSASD--PNSSIFLTDTA 365 Query: 237 DIIAKKIQKAKTDGDVLPSEVSG-LENRLEAKNLIEI--FATMRQIKIEEALKQF--GGK 291 I K+ K G E + F K+E+ K + G Sbjct: 366 KQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAM 425 Query: 292 NFSQFKLALADAVIEEIVPISQKIQHLLKD--KSYLD 326 + K AL + + I + + + + K ++ Sbjct: 426 LTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMT 462 >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Score = 166 bits (420), Expect = 9e-42 Identities = 55/351 (15%), Positives = 103/351 (29%), Gaps = 46/351 (13%) Query: 10 SGVQP-TGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV-QENLRYQSRLF 67 +G P +G LHLG+ L I + ++ + D + N + + +R Sbjct: 96 TGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTREN 155 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127 + +A G DP + IF S + V RM ++ + ++ A+ Sbjct: 156 IKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQL-----RASFGFSNDAN 210 Query: 128 LGLFMYPVLMAADILLYRATH-------VPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180 +G +P + +PVG + T + + Sbjct: 211 VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSP 270 Query: 181 AQKYAQEEQYSKGF---FPIIEGLIDSSA----------------------SRIRSLRDA 215 + SK + +I I+ + L+ + Sbjct: 271 VHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGS 330 Query: 216 SKKMSKSDSSDFSRINLLDNPDIIAKKIQKA-KTDGDVLPSEVSGLENRLEAKNLIEIFA 274 KMS SD S I L D P I KI + + G E L + Sbjct: 331 GTKMSASD--PNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLE 388 Query: 275 TM--RQIKIEEALKQF--GGKNFSQFKLALADAVIEEIVPISQKIQHLLKD 321 ++E+ + G + K L + I +++ + Sbjct: 389 VFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT 439 >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica} Length = 386 Score = 165 bits (418), Expect = 2e-41 Identities = 49/338 (14%), Positives = 97/338 (28%), Gaps = 59/338 (17%) Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-IVQENLRYQSRLF 67 P + L Y+ + Q+ N + I D + N S Sbjct: 86 FIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144 Query: 68 VASFLAAGVDPSRNIIFKQSD-VGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126 + LA G + + I+ G ++ + F+ Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSD-------- 196 Query: 127 SLGLFMYPVLMAADILLYRATH---------VPVGEDQRQHLEITRLIAQRFNTEFERKI 177 ++G P +M A + +H V Q I IA N + Sbjct: 197 NIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVL 256 Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237 ++ L K SD + I L DN Sbjct: 257 F----------------------------HKMVPLLSGVTKFDI--PSDHNSILLSDNAK 286 Query: 238 IIAKKIQKAKTDGD----VLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGK 291 + +KI K G ++ G + + L+ IF++ ++++ +++ G Sbjct: 287 QVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNA-QVKDVEEKYSKGEL 345 Query: 292 NFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTIL 329 + K ++ ++ + IV K + + YL + Sbjct: 346 LSGELKKIVSASMKDFIVAYDAKKKPITTA--YLKAYI 381 >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A* Length = 314 Score = 164 bits (417), Expect = 2e-41 Identities = 58/315 (18%), Positives = 107/315 (33%), Gaps = 50/315 (15%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLFV 68 G +P+G +HLG+YL I+ +I Q + +ADL A N + + +R Sbjct: 33 IGFEPSGKIHLGHYLQ-IKKMIDLQNA-GFDIIILLADLAAYLNQKGELDEIRKIGDYNK 90 Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128 F A G+ S+ D + + +A + + E ++E + Sbjct: 91 KVFEAMGLKA---KYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL-IAREDENPKV 146 Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188 +YP++ G +QR+ + R + + Sbjct: 147 AEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLPKKVVCI--------------- 191 Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248 P++ GL K SS + I + D+P+ I KI+KA Sbjct: 192 -----HNPVLTGLD---------------GEGKMSSSKGNFIAVDDSPEEIRAKIKKAYC 231 Query: 249 DGD------VLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLAL 300 ++ LE L K + + EE F + K A+ Sbjct: 232 PAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAV 291 Query: 301 ADAVIEEIVPISQKI 315 A+ +I+ + PI +++ Sbjct: 292 AEELIKILEPIRKRL 306 >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} Length = 432 Score = 155 bits (393), Expect = 1e-38 Identities = 50/362 (13%), Positives = 108/362 (29%), Gaps = 58/362 (16%) Query: 10 SGVQPTGV-LHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ--ENLRYQSRL 66 +G P+ +HLG+ + + ++ + + D +++ +R Sbjct: 107 TGRGPSSDSMHLGHMIPFVFTKWLQEVFDVP-LVIELTDDEKFLFKHKLTINDVKNFARE 165 Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126 +A G DP IF A ++ ++ F + Sbjct: 166 NAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC----- 220 Query: 127 SLGLFMYPVLMAADILLY-----------RATHVPVGEDQRQHLEITRLIAQRFNTEFER 175 +G F + + A +P DQ + + R +A + Sbjct: 221 -IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPA 279 Query: 176 KIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDN 235 + +L+ ++ KMS SD D + I + D Sbjct: 280 LLHS---------------------------RFFPALQGSTTKMSASD--DTTAIFMTDT 310 Query: 236 PDIIAKKIQKAKTDGDVLPSEVSG-LENRLEAKNLIEIFA--TMRQIKIEEALKQF--GG 290 P I KKI K G + +++ L + + + + ++E ++ G Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGE 370 Query: 291 KNFSQFKLALADAVIEEIVPISQKIQHLLK---DKSYLDTILVEGANRARCRAQETMKYV 347 + K + + E + ++ + + DK + LV G + K Sbjct: 371 LLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQE 430 Query: 348 NE 349 + Sbjct: 431 KK 432 >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Score = 155 bits (392), Expect = 2e-38 Identities = 60/365 (16%), Positives = 111/365 (30%), Gaps = 62/365 (16%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI------VQENLRYQ 63 G PTG H G ++ M + + C +ADLHA +N+ V +Y Sbjct: 44 WGTAPTGRPHCGYFVPMTKLADFLKAGCE--VTVLLADLHAFLDNMKAPLEVVNYRAKYY 101 Query: 64 SRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE 123 A + V + S D + + ++ + N+ + + Sbjct: 102 ELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGAD-VVKQV 160 Query: 124 ETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQK 183 L +YP++ A D G DQR+ + + + Sbjct: 161 ANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHL------ 214 Query: 184 YAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKI 243 P++ G KMS SD + +I+LL+ P + KKI Sbjct: 215 ----------MNPMVPG------------LAQGGKMSASDPNS--KIDLLEEPKQVKKKI 250 Query: 244 QKAKTDGDVLP--SEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFS------- 294 A + +S ++ + ++ + I+ K G + Sbjct: 251 NSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKL 310 Query: 295 ----------QFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETM 344 K+ +ADA+ E + PI Q+ + +G A + + Sbjct: 311 AFKEEKLSPPDLKIGVADAINELLEPIRQE----FANNKEFQEASEKGYPVATPQKSKKA 366 Query: 345 KYVNE 349 K Sbjct: 367 KKPKN 371 >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Score = 151 bits (381), Expect = 3e-37 Identities = 51/348 (14%), Positives = 106/348 (30%), Gaps = 59/348 (16%) Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLF 67 +G P+ +H+G+ + + Q++ + + D + E + + Sbjct: 83 TGRGPSSESMHMGHLIPFMFTK-WLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTEN 141 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127 + +A G DP IF+ D + + VA++ Q + E + Sbjct: 142 IKDIIAMGFDPELTFIFRDFDY-----MGCMYRTVAKIERAFTASQVRGCFGFAME--DN 194 Query: 128 LGLFMYPVLMAADILLY------------RATHVPVGEDQRQHLEITRLIAQRFNTEFER 175 G +M+P + AA +P DQ + +TR IA R Sbjct: 195 CGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKP- 253 Query: 176 KIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDN 235 + L KMS S + + L D Sbjct: 254 --------------------------AVIHSKFFPGLSGPKGKMSSSSGTA---VLLTDT 284 Query: 236 PDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATM---RQIKIEEALKQF--GG 290 ++ KI K G + L ++ + + ++ K++ G Sbjct: 285 EKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGR 344 Query: 291 KNFSQFKLALADAVIEEIVPISQKIQHLLKD--KSYLDTILVEGANRA 336 + K L + + +K + + + + + T ++ A +A Sbjct: 345 IMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKA 392 >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Score = 148 bits (375), Expect = 1e-36 Identities = 66/344 (19%), Positives = 119/344 (34%), Gaps = 40/344 (11%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV---QENLRYQSRL 66 G +P+GV H+G + M + + A HA N+ + + +R +R+ Sbjct: 40 IGYEPSGVAHIGWLVWMYKVKDLVE--AGVDFSVLEATWHAYINDKLGGDMDLIRAAARI 97 Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE-ET 125 AAGV R ++ D ++ VA+ + + + E Sbjct: 98 VRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAE 157 Query: 126 ASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYA 185 +YP++ +DI G DQR+ + R +A++ + I Sbjct: 158 VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAI-------- 209 Query: 186 QEEQYSKGFFPIIEGL----IDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAK 241 PII L ++ A KMSKS + + ++D+ D I + Sbjct: 210 --------HTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK--PETAVFVVDSDDDIRR 259 Query: 242 KIQKAKTDG------DVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF------G 289 KI+KA VL L R ++ A + ++ G Sbjct: 260 KIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDG 319 Query: 290 GKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGA 333 + K A+A+++IE + PI + K L+ I + Sbjct: 320 RLHPLDLKNAVAESLIEVVRPIRGAVLGDPAMKRALEAIEGKVT 363 >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Score = 138 bits (348), Expect = 2e-33 Identities = 52/344 (15%), Positives = 104/344 (30%), Gaps = 45/344 (13%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ--ENLRYQSRLF 67 +G P+G +H+G+ + +++ +L I D ++ + + Sbjct: 78 TGRGPSGPMHIGHIIPFFATKWLQEKFGVNL-YIQITDDEKFLFKENLTFDDTKRWAYDN 136 Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127 + +A G DP + IF+ S+ +++ ++ + F E+SK Sbjct: 137 ILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMI---- 192 Query: 128 LGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQE 187 F + +A + +P DQ + + R A+ + Sbjct: 193 ---FFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHS-------- 241 Query: 188 EQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAK 247 + SL S KMS S + D+P+ + KK+ K Sbjct: 242 -------------------KFVPSLTSLSGKMSASKPETAIYLT--DSPEDVEKKVWKFT 280 Query: 248 TDGDVLPSEV----SGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALA 301 G + G + +EIF K++E G + K L Sbjct: 281 LTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLI 340 Query: 302 DAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMK 345 + E + ++ + K E +K Sbjct: 341 SKIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLK 384 >2j5b_A Tyrosyl-tRNA synthetase; tyrosynol, ligase; HET: TYB; 2.2A {Mimivirus} Length = 348 Score = 133 bits (335), Expect = 6e-32 Identities = 53/331 (16%), Positives = 103/331 (31%), Gaps = 47/331 (14%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV---QENLRYQSRL 66 +G +P+G +H+ L + N E C + +IAD A N + +R R Sbjct: 45 NGFEPSGRIHIAQALITVMNTNNMIE-CGGQMIIYIADWFAKMNLKMNGDINKIRELGRY 103 Query: 67 FVASFLAAGVDPSRNIIFKQSD----VGYHADLSWILSCVARMGWMNNMIQFKEKSKENK 122 F+ F A G++ S+ + + ++ + + + Q +++ + Sbjct: 104 FIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDC 163 Query: 123 EETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQ 182 YP + AAD+ VP G D Q R + + ++ Sbjct: 164 L---KASQIFYPCMQAADVF----ELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPI 216 Query: 183 KYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKK 242 + S K S S I + D +++K Sbjct: 217 SLSHHMLMSLSG----------------------PKKKMSKSDPQGAIFMDDTEQEVSEK 254 Query: 243 IQKAKTDGDVLPSEVSG-----LENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFK 297 I +A + + + L NL T IE + F N + K Sbjct: 255 ISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGKIYT----DIESIQEDFSSMNKRELK 310 Query: 298 LALADAVIEEIVPISQKIQHLLKDKSYLDTI 328 +A+ + I + + + + L + Sbjct: 311 TDVANYINTIIDLVREHFKKPELSE-LLSNV 340 >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Score = 91.3 bits (225), Expect = 3e-19 Identities = 60/319 (18%), Positives = 114/319 (35%), Gaps = 47/319 (14%) Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI-VQENLRYQSRLFV 68 G +P+G +HLG+ + ++ ++ QE + +AD+HA N E + + Sbjct: 37 VGYEPSGEIHLGHMMT-VQKLMDLQE-AGFEIIVLLADIHAYLNEKGTFEEIAEVADYNK 94 Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128 F+A G+D SR S+ D + +AR+ +N + ++ KE+ Sbjct: 95 KVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMV- 153 Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188 +YP++ A DI G DQR+ + R R Sbjct: 154 SQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSS--------------- 198 Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248 PI+ GL K SS + I++ D P+ + +KI+KA Sbjct: 199 -PVCLHTPILVGLD----------------GQKMSSSKGNYISVRDPPEEVERKIRKAYC 241 Query: 249 DG---------DVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFK 297 D+ + ++ + + + EE + F G + K Sbjct: 242 PAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLK 301 Query: 298 LALADAVIEEIVPISQKIQ 316 +A+A + + +++ Sbjct: 302 IAVAKYLNMLLEDARKRLG 320 >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Length = 432 Score = 75.6 bits (185), Expect = 1e-14 Identities = 51/347 (14%), Positives = 107/347 (30%), Gaps = 36/347 (10%) Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-------------- 54 G PT LHLG+ + + +R+ + H + I D + + Sbjct: 42 LGADPTRPDLHLGHAVVLR--KMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLE 99 Query: 55 IVQENLRYQSRLFVASFLAAGVDPSRNIIFKQSDV--GYHADLSWILSCVARMGWMNNMI 112 +EN + +P + S+ G L+ + + M Sbjct: 100 ETRENAKTYVAQA---GKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 156 Query: 113 QFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFN-- 170 FK++ + SL +YP A D + RA G DQR +L + R + + + Sbjct: 157 DFKKRYEAGIP--ISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQS 214 Query: 171 -----TEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSS 225 + +K ++ G E + L + ++ Sbjct: 215 PQVCFLMPLLVGLDGREKMSKSLDNYIGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEE 274 Query: 226 DFSRINLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKI-EEA 284 + L P + + + T LP ++ A R + E Sbjct: 275 EEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEE 334 Query: 285 LKQFGGKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVE 331 +++ + K + + + E +P S+ L + + ++ + Sbjct: 335 VRRAEARYDEVAKGGIPEEIPEVTIPASE----LKEGRIWVARLFTL 377 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 50.7 bits (121), Expect = 4e-07 Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 67/224 (29%) Query: 44 FIADLHAITNNIVQENLRYQSRL-FVASFL---AAGVDPSRNIIFKQSDVGYHAD-LSWI 98 F L T ++ + V FL ++ V+PS VG L+ Sbjct: 37 FNKILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPS--------KVGQFDQVLNLC 87 Query: 99 LSCVAR--MGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADIL--LYRATHVPVGED 154 L+ + N I + +T ++ +++ A + Sbjct: 88 LTEFENCYLE--GNDIHALAAKLLQENDT--------TLVKTKELIKNYITARIMAKRPF 137 Query: 155 QRQH---L------EITRLIAQRF----NTE--FERKIKEVAQKYAQEEQYSKGFFPIIE 199 ++ L +L+A F NT+ FE E+ Y + Y ++ Sbjct: 138 DKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFE----ELRDLY---QTYH----VLVG 185 Query: 200 GLIDSSASRIRSL-RDASKKMSKSDSSD-FSR-INL---LDNPD 237 LI SA + L R D+ F++ +N+ L+NP Sbjct: 186 DLIKFSAETLSELIRTT------LDAEKVFTQGLNILEWLENPS 223 Score = 44.5 bits (105), Expect = 3e-05 Identities = 33/224 (14%), Positives = 70/224 (31%), Gaps = 77/224 (34%) Query: 159 LEITRLI-------AQRFNTEFERKIKEVAQKYAQ-EEQYSK--------GFFPII-EGL 201 LE L+ A + +F + + E + +A +E + G+ + Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY--VSSLVE 73 Query: 202 IDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDI--IAKKIQKAKTDGDVLPSEVSG 259 + L +F L+ DI +A AK + + Sbjct: 74 PSKVGQFDQVLNLCLT--------EFEN-CYLEGNDIHALA-----AKLLQENDTTL--- 116 Query: 260 LENRLEAKNLIEIF-----ATMRQI-KIEE-ALKQ------------FGGK-N----FSQ 295 ++ K LI+ + R K AL + FGG+ N F + Sbjct: 117 ----VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172 Query: 296 FKLALAD------AVIEEIV-PISQKIQHLLKDKSYLDTILVEG 332 L D ++ +++ ++ + L++ + + +G Sbjct: 173 ----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212 Score = 34.5 bits (79), Expect = 0.038 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 49/196 (25%) Query: 169 FNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDF- 227 F E ++I+E YS F E ++D + ++ ++ S S F Sbjct: 1676 FGGEKGKRIRE---------NYSAMIF---ETIVDGKLKTEKIFKEINEH---STSYTFR 1720 Query: 228 SRINLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQ 287 S LL Q A T E + E+ L++K LI AT Sbjct: 1721 SEKGLLSATQFT----QPALT-----LMEKAAFED-LKSKGLIPADAT------------ 1758 Query: 288 FGGKNFSQFK-LA-LADAV-IEEIVPI----SQKIQ-HLLKD---KSYLDTILVEGANRA 336 F G + ++ LA LAD + IE +V + +Q + +D +S I + A Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818 Query: 337 RCRAQETMKYVNEIVG 352 +QE ++YV E VG Sbjct: 1819 ASFSQEALQYVVERVG 1834 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.8 bits (71), Expect = 0.21 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 15/63 (23%) Query: 139 ADILLYRATHVPVG-----EDQRQHLE----ITRLIAQRFNTEFERKIKEVAQKYAQEEQ 189 AD R T P E+QR+ L+ ++++ Q + + ++ ++E Q+ Q EQ Sbjct: 77 AD----RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR--QSEQ 130 Query: 190 YSK 192 K Sbjct: 131 VEK 133 >1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1 Length = 511 Score = 30.7 bits (69), Expect = 0.46 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237 +V + ++Y I E + + IRS DA ++K ++ +IN D Sbjct: 334 DKVGEYLG--DKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEA 391 Query: 238 II 239 I+ Sbjct: 392 IV 393 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.2 bits (64), Expect = 1.5 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 12/36 (33%) Query: 116 EKSKENKEETASLGLFMYPVLMAAD----ILLYRAT 147 EK K + ASL L+ AD L +AT Sbjct: 18 EKQALKKLQ-ASLKLY-------ADDSAPALAIKAT 45 >2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179 Score = 28.1 bits (62), Expect = 2.9 Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 172 EFERKIKEVAQKYAQEEQ 189 E+++KIKE QKYA EE Sbjct: 155 EYKQKIKEYIQKYATEEA 172 >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} SCOP: c.68.1.6 Length = 295 Score = 27.9 bits (62), Expect = 3.1 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%) Query: 101 CVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLE 160 V +I +EK K GL+ Y ++ P R LE Sbjct: 147 GVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYD----NQVVEIARRIEP---SDRGELE 199 Query: 161 ITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDS 204 IT + + + + E +G + G D Sbjct: 200 ITSVN-----------EEYLRMGKLRVELMGRGMAWLDTGTHDG 232 >3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} Length = 345 Score = 27.8 bits (61), Expect = 3.5 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 8/65 (12%) Query: 22 NYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLF--VASFLAAGVDPS 79 + + +R VI E M + ++H T + +L + + L Sbjct: 84 DDIDTVREVI---ELAEQNKMVAVVEVHDATGRDSRSDLDRAVDYWIEMKDALI---GKE 137 Query: 80 RNIIF 84 +I Sbjct: 138 DTVII 142 >1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Length = 364 Score = 27.8 bits (61), Expect = 4.1 Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 3/40 (7%) Query: 11 GVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHA 50 + G ++ I E MY I D H Sbjct: 76 YIGENGYATNPEVKDLVYEGI---ELAFEHDMYVIVDWHV 112 >3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* 1yla_A 2o25_A Length = 253 Score = 27.3 bits (60), Expect = 4.9 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%) Query: 172 EFERKIKEVAQKYA----QEEQYSKGFFPIIEGLIDSSASRI 209 F++ + A YA +Y+K + D +A + Sbjct: 193 MFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIV 234 >1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli} SCOP: f.1.1.1 Length = 321 Score = 27.2 bits (60), Expect = 5.7 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237 ++ + +Y + + + IRS +A ++K ++ ++N D Sbjct: 142 DKLGEYLG--VKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDA 199 Query: 238 IIA 240 I+ Sbjct: 200 IVN 202 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.1 bits (59), Expect = 5.8 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 18/73 (24%) Query: 1 MLSSDNLFVSGVQPTGVLHLG------NYLGMIR-NVIRRQETCN--------HLGMYFI 45 ++S++N+ G++ GV N LG++ V+ E C + G+ F+ Sbjct: 678 LMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVV---ELCQKSPVMADLNGGLQFV 734 Query: 46 ADLHAITNNIVQE 58 +L T + +E Sbjct: 735 PELKEFTAKLRKE 747 >1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative, ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171 Score = 27.0 bits (59), Expect = 5.9 Identities = 3/18 (16%), Positives = 9/18 (50%) Query: 172 EFERKIKEVAQKYAQEEQ 189 F+ ++E +A ++ Sbjct: 142 GFDALLREHVSTHATPQK 159 >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 Score = 27.3 bits (59), Expect = 5.9 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 7 LFVSGVQPTGVLHLGNYLGMIR-NVIRR 33 + SG+ P+G +H+GN+ + ++ Sbjct: 23 VVESGITPSGYVHVGNFRELFTAYIVGH 50 >1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1 Length = 204 Score = 27.1 bits (60), Expect = 6.6 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237 ++ + ++Y I + + + IRS DA ++K ++ +IN D Sbjct: 24 DKIGEHLG--DKYKAIAKDIADNIKNFQGKTIRSFDDAMASLNKITANPAMKINKADRDA 81 Query: 238 IIA 240 ++ Sbjct: 82 LVN 84 >2onu_A Ubiquitin-conjugating enzyme, putative; UBC, structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum 3D7} Length = 152 Score = 26.6 bits (58), Expect = 8.1 Identities = 6/19 (31%), Positives = 12/19 (63%) Query: 172 EFERKIKEVAQKYAQEEQY 190 +E K+KE + YA ++ + Sbjct: 133 IYEEKVKEYVKLYASKDLW 151 >3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} Length = 195 Score = 26.5 bits (58), Expect = 8.7 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%) Query: 49 HAITNNIVQENLRYQSRLFVASFL-AAGVDPSRNIIF 84 +LR+ R+ FL G+ + + F Sbjct: 21 QLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQF 57 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0553 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,909,375 Number of extensions: 134015 Number of successful extensions: 601 Number of sequences better than 10.0: 1 Number of HSP's gapped: 509 Number of HSP's successfully gapped: 56 Length of query: 355 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 262 Effective length of database: 3,438,538 Effective search space: 900896956 Effective search space used: 900896956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.1 bits)